IslandPath Analysis: Salmonella enterica subsp. enterica serovar Typhi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.17   STD DEV: 5.59
Salmonella enterica subsp. enterica serovar Typhi, complete genome - 0..4809037
4395 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 54.55         190..255      	 +	21	16758994	thrL	STY0001	-	thr operon leader peptide	
2	 56.15         337..2799     	 +	820	16758995	thrA	STY0002	E	aspartokinase I/homoserine dehydrogenase I	
3	 57.85 +1     2801..3730     	 +	309	16758996	thrB	STY0003	E	homoserine kinase	
4	 55.94        3734..5020     	 +	428	16758997	thrC	STY0004	E	threonine synthase	
5	 50.39        5114..5887     	 -	257	16758998	yaaA	STY0005	S	conserved hypothetical protein	
6	 55.70        5966..7396     	 -	476	16758999	yaaJ	STY0006	E	putative amino-acid transport protein	
7	 53.77        7665..8618     	 +	317	16759000	talB	STY0007	G	transaldolase B	
8	 56.01        8729..9319     	 +	196	16759001	mog	STY0008	H	molybdopterin biosynthesis Mog protein	
9	 53.79        9376..9942     	 -	188	16759002	yaaH	STY0009	R	conserved hypothetical protein	
10	 53.92       10092..10805    	 -	237	16759003	-	STY0010	-	conserved hypothetical protein	
11	 49.38       10841..11245    	 -	134	16759004	yaaI	STY0011	-	conserved hypothetical protein	
12	 52.74       11594..13510    	 +	638	16759005	dnaK	STY0012	O	DnaK protein (heat shock protein 70)	
13	 54.12       13596..14735    	 +	379	16759006	dnaJ	STY0013	O	DnaJ protein	
14	 41.03 -1    15020..15967    	 +	315	16759007	-	STY0014	K	putative regulatory protein	
15	 40.00 -2    16094..16438    	 +	114	16759008	-	STY0015	-	putative phage protein	
16	 50.94       16499..17032    	 -	177	16759009	-	STY0016	-	conserved hypothetical protein	
17	 38.29 -2    17049..17492    	 -	147	16759010	-	STY0017	-	putative membrane protein	
18	 51.62       17873..19972    	 +	699	16759011	-	STY0018	G	putative chitinase	
19	 55.30       20004..21155    	 +	383	16759012	-	STY0019	-	hypothetical protein	
20	 54.00       21198..23060    	 +	620	16759013	-	STY0020	-	hypothetical protein	
21	 46.38 -1    23341..24045    	 +	234	16759014	-	STY0021	-	conserved hypothetical protein	
22	 52.12       24473..25015    	 +	180	16759015	bcfA	STY0024	N	fimbrial subunit	
23	 51.24       25116..25802    	 +	228	16759016	bcfB	STY0025	N	fimbrial chaperone	
24	 50.30       28429..29436    	 +	335	16759017	bcfD	STY0029	-	fimbrial subunit	
25	 47.62       29437..29982    	 +	181	16759018	bcfE	STY0030	-	fimbrial subunit	
26	 55.88       29998..30516    	 +	172	16759019	bcfF	STY0031	N	fimbrial subunit	
27	 54.18       30509..31213    	 +	234	16759020	bcfG	STY0032	N	fimbrial chaperone	
28	 54.49       31278..32123    	 +	281	16759021	-	STY0033	O	putative exported protein	
29	 41.32 -1    32162..32449    	 +	95	16759022	-	STY0034	-	putative membrane protein	
30	 36.89 -2    32549..32998    	 -	149	16759023	-	STY0035	-	putative membrane protein	
31	 38.45 -2    33368..34363    	 +	331	16759024	-	STY0036	K	putative transcriptional regulator (lysR family)	
32	 38.24 -2    34511..34816    	 -	101	16759025	-	STY0038	T	putative transcriptional regulator	
33	 45.90 -1    35339..37057    	 +	572	16759026	-	STY0039	-	possible sulfatase	
34	 46.69       37103..38674    	 -	523	16759027	-	STY0040	F	putative secreted 5'-nucleotidase	
35	 43.96 -1    38773..39534    	 -	253	16759028	-	STY0041	-	putative exported protein	
36	 52.54       40128..41621    	 +	497	16759029	-	STY0042	P	putative secreted sulfatase	
37	 49.54       41720..42910    	 +	396	16759030	-	STY0043	R	possible sulfatase regulatory protein	
38	 50.00       43198..44181    	 +	327	16759031	-	STY0045	-	hypothetical protein	
39	 50.23       44308..46023    	 +	571	16759032	-	STY0046	-	possible sulfatase	
40	 56.38       46186..47352    	 +	388	16759033	nhaA	STY0047	P	Na(+)/H(+) antiporter 1	
41	 50.67       47414..48313    	 +	299	16759034	nhaR	STY0048	K	transcriptional activator protein NhaR	
42	 54.26       48368..50407    	 -	679	16759035	-	STY0049	G	putative glycosyl hydrolase	
43	 48.69       50447..51820    	 -	457	16759036	-	STY0050	G	putative transport protein	
44	 46.59       52277..52540    	 -	87	16759037	rpsT	STY0052	J	30S ribosomal protein S20	
45	 47.69       52646..52861    	 +	71	16759038	-	STY0053	-	conserved hypothetical protein	
46	 56.55       52869..53807    	 +	312	16759039	ribF	STY0054	H	riboflavin biosynthesis protein RibF	
47	 54.85       53852..56686    	 +	944	16759040	ileS	STY0055	J	isoleucyl-tRNA synthetase	
48	 51.70       56686..57186    	 +	166	16759041	lspA	STY0056	N	lipoprotein signal peptidase	
49	 54.67       57341..57790    	 +	149	16759042	fkpB	STY0057	O	probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase	
50	 56.78       57793..58743    	 +	316	16759043	lytB	STY0058	I	LytB protein	
51	 48.55       58943..60145    	 +	400	16759044	-	STY0059	-	hypothetical protein	
52	 56.35       60161..61081    	 +	306	16759045	yaaF	STY0060	F	putative nucleoside hydrolase (IUNH family)	
53	 48.47       61103..61789    	 -	228	16759046	citB	STY0061	T	transcriptional regulatory protein citb	
54	 47.78       61791..63410    	 -	539	16759047	citA	STY0062	T	sensor kinase cita	
55	 63.59 +2    63545..64846    	 -	433	16759048	oadB	STY0063	C	oxaloacetate decarboxylase beta chain	
56	 64.02 +2    64859..66634    	 -	591	16759049	oadA	STY0064	C	oxaloacetate decarboxylase alpha chain	
57	 56.25       66650..66889    	 -	79	16759050	oadG	STY0065	C	oxaloacetate decarboxylase gamma chain	
58	 49.22       67048..68388    	 -	446	16759051	citC	STY0066	C	citrate-sodium symporter	
59	 53.54       68633..69676    	 +	347	16759052	citC2	STY0067	C	[citrate (PRO-3S)-lyase] ligase	
60	 56.46       69706..69999    	 +	97	16759053	citD2	STY0068	C	citrate lyase acyl carrier protein	
61	 55.40       69996..70865    	 +	289	16759054	citE2	STY0069	G	citrate lyase beta chain	
62	 54.96       70876..72396    	 +	506	16759055	citF2	STY0070	C	citrate lyase alpha chain	
63	 55.98       72396..72947    	 +	183	16759056	citX2	STY0071	H	citx protein	
64	 54.79       72925..73833    	 +	302	16759057	citG2	STY0072	H	citg protein	
65	 56.69       74013..74834    	 +	273	16759058	dapB	STY0073	E	dihydrodipicolinate reductase	
66	 55.53       75696..76844    	 +	382	16759059	carA	STY0076	E	carbamoyl-phosphate synthase small chain	
67	 58.95 +1    76860..80087    	 +	1075	16759060	carB	STY0077	E	carbamoyl-phosphate synthase large chain	
68	 46.46 -1    80361..80756    	 +	131	16759061	caiF	STY0078	-	transcriptional activator CaiF	
69	 55.61       80834..81430    	 -	198	16759062	caiE	STY0079	R	carnitine operon protein CaiE	
70	 56.49       81542..82327    	 -	261	16759063	caiD	STY0080	I	carnitine racemase	
71	 51.09       82381..83934    	 -	517	16759064	caiC	STY0081	I	probable crotonobetaine/carnitine-CoA ligase	
72	 53.61       83997..85214    	 -	405	16759065	caiB	STY0082	C	L-carnitine dehydratase	
73	 52.49       85326..86468    	 -	380	16759066	caiA	STY0083	I	probable carnitine operon oxidoreductase CaiA	
74	 53.75       86503..88020    	 -	505	16759067	caiT	STY0084	M	probable carnitine transporter	
75	 52.01       88501..89271    	 +	256	16759068	fixA	STY0085	C	FixA protein	
76	 59.34 +1    89287..90228    	 +	313	16759069	fixB	STY0086	C	FixB protein	
77	 55.48       90278..91564    	 +	428	16759070	fixC	STY0087	C	FixC protein	
78	 53.82       91561..91848    	 +	95	16759071	fixX	STY0088	C	ferredoxin like protein FixX	
79	 54.81       91996..93159    	 +	387	16759072	yaaU	STY0089	G	putative metabolite transport protein	
80	 48.48       93425..93655    	 +	76	16759073	-	STY0091	-	putative lipoprotein	
81	 46.57 -1    93940..94362    	 +	140	16759074	-	STY0093	-	probable secreted protein	
82	 47.42       94586..94876    	 -	96	16759075	-	STY0095	-	probable secreted protein	
83	 38.46 -2    95086..95280    	 +	64	16759076	-	STY0096	-	putative membrane protein	
84	 48.44       95774..95998    	 +	74	16759077	-	STY0097	-	probable secreted protein	
85	 47.20       96050..97354    	 +	434	16759078	-	STY0098	P	puatative sulfatase	
86	 40.38 -2    97351..97662    	 +	103	16759079	-	STY0099	P	hypothetical protein	
87	 53.48       98069..98599    	 +	176	16759080	yabF	STY0100	R	putative NAD(P)H oxidoreductase	
88	 57.86 +1    98592..100454   	 +	620	16759081	kefC	STY0101	P	glutathione-regulated potassium-efflux system protein KefC	
89	 53.54      100653..101132   	 +	159	16759082	folA	STY0102	H	dihydrofolate reductase type I	
90	 55.48      101228..102076   	 -	282	16759083	apaH	STY0103	T	bis(5'-nucleosyl)-tetraphosphatase	
91	 53.97      102087..102464   	 -	125	16759084	apaG	STY0104	P	CorD protein	
92	 52.68      102467..103288   	 -	273	16759085	ksgA	STY0105	J	dimethyladenosine transferase	
93	 58.79 +1   103285..104274   	 -	329	16759086	pdxA	STY0106	H	pyridoxal phosphate biosynthetic protein PdxA	
94	 54.16      104274..105560   	 -	428	16759087	surA	STY0107	O	survival protein SurA precursor	
95	 52.91      105614..107968   	 -	784	16759088	imp	STY0108	M	organic solvent tolerance protein precursor	
96	 54.00      108222..109034   	 +	270	16759089	djlA	STY0109	O	DnaJ-like protein	
97	 57.58      109129..109788   	 -	219	16759090	rluA	STY0110	J	ribosomal large subunit pseudouridine synthase A	
98	 57.03      109800..112706   	 -	968	16759091	hepA	STY0111	K	probable ATP-dependent helicase HepA	
99	 56.59      112880..115231   	 -	783	16759092	polB	STY0112	L	DNA polymerase II	
100	 46.03 -1   115571..116011   	 -	146	16759093	-	STY0114	L	putative IS element transposase	

 
 52.17 MEAN 
 
 5.59  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.