IslandPath Analysis: Sinorhizobium meliloti 1021



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.03   STD DEV: 2.97
Sinorhizobium meliloti 1021 complete genomes - 0..3654135
3341 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 61.44         478..1299     	 +	273	15963754	-	SMc02793	S	CONSERVED HYPOTHETICAL PROTEIN	
2	 61.50        1347..1946     	 +	199	15963755	-	SMc02792	D	CONSERVED HYPOTHETICAL PROTEIN	
3	 62.14        1939..2799     	 +	286	15963756	aroE1	SMc02791	E	PROBABLE SHIKIMATE 5-DEHYDROGENASE PROTEIN	
4	 64.44        2796..3380     	 +	194	15963757	-	SMc02790	H	CONSERVED HYPOTHETICAL PROTEIN	
5	 63.24        3574..4302     	 +	242	15963758	dnaQ	SMc02789	L	PROBABLE DNA POLYMERASE III, EPSILON CHAIN PROTEIN	
6	 62.72        4408..4914     	 -	168	15963759	secB	SMc02788	N	PROBABLE PROTEIN-EXPORT	
7	 65.10        5082..5657     	 -	191	15963760	-	SMc02787	R	HYPOTHETICAL TRANSMEMBRANE PROTEIN	
8	 58.69 -1     5792..6493     	 +	233	15963761	-	SMc02786	-	PUTATIVE TRANSLOCASE TRANSMEMBRANE PROTEIN	
9	 65.42        6511..7629     	 +	372	15963762	-	SMc02785	M	PUTATIVE LYTIC MUREIN TRANSGLYCOSYLASE A PROTEIN	
10	 67.02 +1     7622..8188     	 +	188	15963763	-	SMc02784	S	HYPOTHETICAL PROTEIN	
11	 61.90        8185..8562     	 +	125	15963764	-	SMc02783	K	HYPOTHETICAL PROTEIN	
12	 63.42        8697..11132    	 +	811	15963765	gyrB	SMc02782	L	PROBABLE DNA GYRASE SUBUNIT B PROTEIN	
13	 64.32       11232..11828    	 -	198	15963766	-	SMc02781	C	PUTATIVE OXIDOREDUCTASE PROTEIN	
14	 64.81       11996..13450    	 +	484	15963767	gabD1	SMc02780	C	PROBABLE SUCCINATE-SEMIALDEHYDE DEHYDROGENASE [NADP+] PROTEIN	
15	 61.90       13646..14611    	 -	321	15963768	TRm19	SMc02779	L	PUTATIVE TRANSPOSASE FOR INSERTION SEQUENCE ISRM19	
16	 66.17 +1    14893..15693    	 +	266	15963769	-	SMc02778	G	PUTATIVE HYDROXYACID ALDOLASE PROTEIN	
17	 62.57       15706..16584    	 -	292	15963770	-	SMc02777	K	PUTATIVE TRANSCRIPTION REGULATOR PROTEIN	
18	 66.93 +1    16752..18257    	 +	501	15963771	-	SMc02776	G	PUTATIVE ALTRONATE HYDROLASE PROTEIN	
19	 64.80       18314..19333    	 +	339	15963772	-	SMc02775	C	PUTATIVE L-FUCOSE DEHYDROGENASE (D-THREO ALDOSE 1-DEHYDROGENASE) PROTEIN	
20	 63.64       19442..20431    	 +	329	15963773	-	SMc02774	G	PUTATIVE ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN	
21	 63.90       20543..22096    	 +	517	15963774	-	SMc02773	G	PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN	
22	 63.79       22130..23104    	 +	324	15963775	-	SMc02772	G	PUTATIVE SUGAR ABC TRANSPORTER PERMEASE PROTEIN	
23	 67.55 +1    23151..24167    	 +	338	15963776	-	SMc02771	E	PUTATIVE ZINC-TYPE ALCOHOL DEHYDROGENASE PROTEIN	
24	 62.59       24435..25709    	 +	424	15963777	-	SMc02770	-	CONSERVED HYPOTHETICAL PROTEIN	
25	 60.09       25859..26284    	 +	141	15963778	-	SMc02769	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
26	 64.55       26383..27138    	 +	251	15963779	-	SMc02768	R	CONSERVED HYPOTHETICAL PROTEIN	
27	 62.65       27376..28023    	 +	215	15963780	trpF	SMc02767	E	PROBABLE N-5'-PHOSPHORIBOSYLANTHRANILATE ISOMERASE PROTEIN	
28	 62.90       28048..29268    	 +	406	15963781	trpB	SMc02766	E	PROBABLE TRYPTOPHAN SYNTHASE BETA CHAIN PROTEIN	
29	 66.79 +1    29274..30113    	 +	279	15963782	trpA	SMc02765	E	PROBABLE TRYPTOPHAN SYNTHASE ALPHA CHAIN PROTEIN	
30	 62.62       30167..31081    	 +	304	15963783	accD	SMc02764	I	PROBABLE ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA PROTEIN	
31	 66.67 +1    31097..32440    	 +	447	15963784	folC	SMc02763	H	PROBABLE FOLC BIFUNCTIONAL PROTEIN INCLUDES: FOLYLPOLYGLUTAMATE SYNTHASE AND DIHYDROFOLATE SYNTHASE	
32	 61.60       32788..33951    	 +	387	15963785	TRm22	SMc02762	L	PROBABLE TRANSPOSASE PROTEIN	
33	 59.57 -1    34091..34414    	 -	107	15963786	trxA	SMc02761	O	PROBABLE THIOREDOXIN PROTEIN	
34	 67.03 +1    34496..38065    	 -	1189	15963787	-	SMc02760	L	PUTATIVE ATP-DEPENDENT NUCLEASE/HELICASE PROTEIN	
35	 67.52 +1    38055..41234    	 -	1059	15963788	-	SMc02759	L	HYPOTHETICAL PROTEIN	
36	 64.34       41236..41967    	 -	243	15963789	-	SMc02758	M	PUTATIVE NUCLEOTIDYL TRANSFERASE PROTEIN	
37	 63.56       41974..43488    	 -	504	15963790	-	SMc02757	R	HYPOTHETICAL PROTEIN	
38	 64.37       43498..45978    	 -	826	15963791	-	SMc02756	T	PUTATIVE SENSOR HISTIDINE KINASE PROTEIN	
39	 62.96       46280..47680    	 -	466	15963792	ahcY	SMc02755	H	PROBABLE ADENOSYLHOMOCYSTEINASE PROTEIN	
40	 64.60       47837..48127    	 -	96	15963793	-	SMc02754	G	PUTATIVE PHOSPHOCARRIER HPR TRANSMEMBRANE PROTEIN	
41	 59.95 -1    48127..48528    	 -	133	15963794	-	SMc02753	G	PUTATIVE IIA COMPONENT OF PTS SYSTEM PROTEIN	
42	 66.67 +1    48809..49255    	 -	148	15963795	-	SMc02752	T	HYPOTHETICAL PROTEIN	
43	 65.10       49252..51039    	 -	595	15963796	chvG	SMc04446	T	HISTIDINE KINASE SENSORY TRANSMEMBRANE PROTEIN	
44	 63.62       51419..52141    	 -	240	15963797	chvI	SMc02560	T	TRANSCRIPTIONAL REGULATORY PROTEIN	
45	 64.80       52483..54093    	 +	536	15963798	pckA	SMc02562	C	PHOSPHOENOLPYRUVATE CARBOXYKINASE PROTEIN	
46	 65.52       54197..54631    	 +	144	15963799	-	SMc02563	J	CONSERVED HYPOTHETICAL PROTEIN	
47	 61.81       54717..55190    	 +	157	15963800	-	SMc02564	S	CONSERVED HYPOTHETICAL PROTEIN	
48	 67.47 +1    55295..55915    	 +	206	15963801	alkB	SMc02566	-	PROBABLE DNA REPAIR SYSTEM SPECIFIC FOR ALKYLATED DNA PROTEIN	
49	 61.75       56529..57524    	 -	331	15963802	coaA	SMc02567	H	PROBABLE PANTOTHENATE KINASE PROTEIN	
50	 62.35       57521..57844    	 -	107	15963803	hisE	SMc02568	E	PROBABLE PHOSPHORIBOSYL-ATP PYROPHOSPHATASE PROTEIN	
51	 64.99       57909..58685    	 -	258	15963804	hisF	SMc02569	E	PROBABLE CYCLASE PROTEIN	
52	 65.99       58682..59425    	 -	247	15963805	hisA	SMc02570	E	PROBABLE PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE PROTEIN	
53	 66.82 +1    59458..60108    	 -	216	15963806	hisH	SMc02572	E	PROBABLE GLUTAMINE AMIDOTRANSFERASE PROTEIN	
54	 64.98       60108..60581    	 -	157	15963807	-	SMc02573	-	HYPOTHETICAL TRANSMEMBRANE PROTEIN	
55	 64.37       60608..61216    	 -	202	15963808	hisB	SMc02574	E	PROBABLE IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE PROTEIN	
56	 63.62       61537..62094    	 +	185	15963809	hslV	SMc02575	O	PROBABLE HEAT SHOCK PROTEIN	
57	 64.37       62084..62605    	 +	173	15963810	-	SMc02576	J	HYPOTHETICAL ACETYLTRANSFERASE PROTEIN	
58	 65.21       62602..63909    	 +	435	15963811	hslU	SMc02577	O	PROBABLE HEAT SHOCK PROTEIN	
59	 63.83       64116..65066    	 +	316	15963812	-	SMc02578	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
60	 64.74       65218..66618    	 +	466	15963813	-	SMc02579	Q	PUTATIVE CYTOCHROME P450 MONOOXYGENASE PROTEIN	
61	 68.16 +1    66749..68755    	 +	668	15963814	-	SMc02580	E	HYPOTHETICAL PROTEIN	
62	 64.78       68916..71087    	 +	723	15963815	glcB	SMc02581	C	PROBABLE MALATE SYNTHASE G PROTEIN	
63	 63.08       71294..72130    	 -	278	15963816	-	SMc02582	S	CONSERVED HYPOTHETICAL PROTEIN	
64	 64.76       72194..72718    	 +	174	15963817	-	SMc02583	-	CONSERVED HYPOTHETICAL PROTEIN	
65	 64.44       72733..73317    	 -	194	15963818	actR	SMc02584	T	TRANSCRIPTION REGULATOR PROTEIN	
66	 65.44       73504..74805    	 -	433	15963819	actS	SMc02585	T	SENSOR HISTIDINE KINASE TRANSMEMBRANE PROTEIN	
67	 68.57 +1    74986..77448    	 -	820	15963820	helO	SMc02586	L	ATP-DEPENDENT HELICASE PROTEIN	
68	 66.96 +1    77448..78131    	 -	227	15963821	-	SMc02587	-	PUTATIVE ATP-BINDING ABC TRANSPORTER PROTEIN	
69	 66.61 +1    78132..79820    	 -	562	15963822	-	SMc02588	H	PUTATIVE PERMEASE ABC TRANSPORTER PROTEIN	
70	 64.38       79804..81030    	 -	408	15963823	-	SMc02589	-	CONSERVED HYPOTHETICAL PROTEIN	
71	 65.59       88119..89423    	 +	434	15963824	-	SMc02590	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
72	 67.41 +1    89374..89913    	 -	179	15963825	-	SMc02591	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
73	 66.33 +1    89910..90503    	 -	197	15963826	-	SMc02592	-	HYPOTHETICAL TRANSMEMBRANE PROTEIN	
74	 65.24       90500..91132    	 -	210	15963827	-	SMc02593	-	HYPOTHETICAL TRANSMEMBRANE PROTEIN	
75	 62.18       91222..91890    	 -	222	15963828	-	SMc02594	H	CONSERVED HYPOTHETICAL PROTEIN	
76	 62.43       91920..93146    	 -	408	15963829	metB	SMc02595	E	PROBABLE CYSTATHIONINE GAMMA-SYNTHASE PROTEIN	
77	 59.62 -1    93287..94138    	 +	283	15963830	-	SMc02596	K	PUTATIVE TRANSCRIPTION REGULATOR PROTEIN	
78	 52.10 -2    94214..94570    	 +	118	15963831	-	SMc04463	G	CONSERVED HYPOTHETICAL PROTEIN	
79	 61.53       94619..95767    	 -	382	15963832	-	SMc02600	T	HYPOTHETICAL TRANSMEMBRANE PROTEIN	
80	 60.27       96049..96345    	 +	98	15963833	-	SMc02602	-	HYPOTHETICAL TRANSMEMBRANE PROTEIN	
81	 61.56       96439..97359    	 -	306	15963834	folD1	SMc02604	H	PROBABLE BIFUNCTIONAL PROTEIN : METHYLENETETRAHYDROFOLATE DEHYDROGENASE ; METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE	
82	 63.67       97382..97915    	 -	177	15963835	soxG	SMc02605	-	PUTATIVE SARCOSINE OXIDASE GAMMA SUBUNIT PROTEIN	
83	 65.55       97908..100871   	 -	987	15963836	soxA1	SMc02606	R	PUTATIVE SARCOSINE OXIDASE ALPHA SUBUNIT TRANSMEMBRANE PROTEIN	
84	 66.31 +1   100868..101146   	 -	92	15963837	soxD	SMc02607	-	SARCOSINE OXIDASE DELTA SUBUNIT PROTEIN	
85	 64.19      101172..102422   	 -	416	15963838	soxB	SMc02608	E	SARCOSINE OXIDASE BETA SUBUNIT PROTEIN	
86	 66.26 +1   102517..103491   	 +	324	15963839	glxA	SMc02609	R	PUTATIVE TRANSCRIPTION REGULATOR PROTEIN	
87	 62.51      103542..104504   	 +	320	15963840	glxB	SMc02610	E	PUTATIVE AMIDOTRANSFERASE PROTEIN	
88	 60.41      104542..105228   	 +	228	15963841	glxC	SMc02611	E	PUTATIVE OXIDOREDUCTASE PROTEIN	
89	 64.64      105243..106571   	 +	442	15963842	glxD	SMc02612	E	PUTATIVE OXIDOREDUCTASE PROTEIN	
90	 61.24      106653..107960   	 +	435	15963843	glnT	SMc02613	E	GLUTAMINE SYNTHETASE III PROTEIN	
91	 64.02      108064..108327   	 -	87	15963844	-	SMc02614	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
92	 67.20 +1   108352..109095   	 -	247	15963845	-	SMc02615	-	HYPOTHETICAL SIGNAL PEPTIDE PROTEIN	
93	 63.09      109201..110598   	 -	465	15963846	-	SMc02616	E	PUTATIVE PERMEASE TRANSMEMBRANE PROTEIN	
94	 61.11      110613..110774   	 -	53	15963847	-	SMc02617	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
95	 61.72      110788..111171   	 -	127	15963848	-	SMc02618	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
96	 58.49 -1   111180..111497   	 -	105	15963849	-	SMc02619	-	CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN	
97	 62.57      111802..112533   	 +	243	15963850	-	SMc02620	K	CONSERVED HYPOTHETICAL PROTEIN	
98	 60.83      112737..113627   	 +	296	15963851	purU2	SMc04154	F	PROBABLE FORMYLTETRAHYDROFOLATE DEFORMYLASE PROTEIN	
99	 60.80      113903..114958   	 +	351	15963852	-	SMc04153	E	PUTATIVE AMINOMETHYLTRANSFERASE PROTEIN	
100	 65.51      114969..115574   	 +	201	15963853	-	SMc04152	-	HYPOTHETICAL PROTEIN	

 
 63.03 MEAN 
 
 2.97  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.