IslandPath Analysis: Neisseria meningitidis serogroup A strain Z2491



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.74   STD DEV: 7.10
Neisseria meningitidis serogroup A strain Z2491 complete genome - 0..2184406
2065 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 56.39          38..358      	 -	106	15793035	NMA0001	NMA0001	G	hypothetical protein NMA0001	
2	 52.30         414..2438     	 -	674	15793036	nuoL	NMA0002	C	NADH dehydrogenase I chain L	
3	 39.77 -1     2487..2828     	 -	113	15793037	NMA0003	NMA0003	-	hypothetical protein NMA0003	
4	 46.35        2952..3527     	 -	191	15793038	NMA0004	NMA0004	D	hypothetical protein NMA0004	
5	 47.71        3561..3866     	 -	101	15793039	nuoK	NMA0005	C	NADH dehydrogenase I chain K	
6	 50.89        3863..4534     	 -	223	15793040	nuoJ	NMA0006	C	NADH dehydrogenase I chain J	
7	 32.49 -2     4570..5277     	 -	235	15793041	NMA0007	NMA0007	-	hypothetical protein NMA0007	
8	 51.46        5308..5787     	 -	159	15793042	nuoI	NMA0008	C	NADH dehydrogenase I chain I	
9	 51.72        5867..6943     	 -	358	15793043	nuoH	NMA0009	C	NADH dehydrogenase I chain H	
10	 55.31        6946..9207     	 -	753	15793044	nuoG	NMA0010	C	NADH dehydrogenase I chain G	
11	 38.89 -1     9489..9758     	 -	89	15793045	NMA0011	NMA0011	L	hypothetical protein NMA0011	
12	 39.33 -1     9778..9927     	 -	49	15793046	NMA0012	NMA0012	-	hypothetical protein NMA0012	
13	 33.11 -2    10044..10481    	 -	145	15793047	NMA0013	NMA0013	-	hypothetical protein NMA0013	
14	 53.76       10481..11782    	 -	433	15793048	nuoF	NMA0014	C	NADH dehydrogenase I chain F	
15	 51.69       12172..12645    	 -	157	15793049	nuoE	NMA0015	C	NADH dehydrogenase I chain E	
16	 54.73       12645..13901    	 -	418	15793050	nuoD	NMA0016	C	NADH dehydrogenase I chain D	
17	 51.01       13891..14484    	 -	197	15793051	nuoC	NMA0017	C	NADH dehydrogenase I chain C	
18	 56.31       14497..14979    	 -	160	15793052	nuoB	NMA0018	C	NADH dehydrogenase I chain B	
19	 51.82       14970..15326    	 -	118	15793053	nuoA	NMA0019	C	NADH dehydrogenase I chain A	
20	 48.82       15777..17261    	 -	494	15793054	NMA0020	NMA0020	E	putative integral membrane protein	
21	 46.86       17251..17871    	 -	206	15793055	NMA0021	NMA0021	-	putative integral membrane protein	
22	 36.77 -2    18070..18447    	 -	125	15793056	NMA0022	NMA0022	L	putative IS1016 transposase	
23	 26.97 -2    18500..18829    	 +	109	15793057	NMA0023	NMA0023	-	hypothetical protein NMA0023	
24	 30.56 -2    18983..19198    	 +	71	15793058	NMA0024	NMA0024	-	hypothetical protein NMA0024	
25	 45.74       19388..19927    	 -	179	15793059	NMA0025	NMA0025	-	hypothetical protein NMA0025	
26	 57.34       20284..22491    	 -	735	15793060	uvrD	NMA0027	L	DNA helicase II	
27	 56.94       22675..23322    	 +	215	15793061	NMA0028	NMA0028	E	hypothetical protein NMA0028	
28	 56.67       23319..24248    	 +	309	15793062	NMA0029	NMA0029	E	hypothetical protein NMA0029	
29	 58.81       24235..24972    	 +	245	15793063	NMA0030	NMA0030	R	hypothetical protein NMA0030	
30	 54.69       25101..26294    	 +	397	15793064	NMA0031	NMA0031	E	putative transmembrane transport protein	
31	 55.70       26402..27094    	 +	230	15793065	NMA0032	NMA0032	R	hypothetical protein NMA0032	
32	 51.24       27359..28324    	 +	321	15793066	NMA0033	NMA0033	L	putative transposase for IS1655	
33	 57.04       28626..31316    	 -	896	15793067	glnE	NMA0035	O	putative glutamate-ammonia-ligase adenylyltransferase	
34	 39.88 -1    31491..31826    	 -	111	15793068	NMA0036	NMA0036	-	hypothetical protein NMA0036	
35	 40.30 -1    32080..32553    	 -	157	15793069	NMA0037	NMA0037	-	hypothetical protein NMA0037	
36	 40.78 -1    32606..32887    	 -	93	15793070	NMA0038	NMA0038	-	hypothetical protein NMA0038	
37	 36.11 -2    32974..33297    	 -	107	15793071	NMA0039	NMA0039	-	hypothetical protein NMA0039	
38	 33.33 -2    33299..33430    	 -	43	15793072	NMA0040	NMA0040	-	hypothetical protein NMA0040	
39	 50.56       33435..33614    	 -	59	15793073	NMA0041	NMA0041	-	hypothetical protein NMA0041	
40	 52.88       33630..34637    	 -	335	15793074	pyrD	NMA0042	F	dihydroorotate dehydrogenase	
41	 47.26       34869..35105    	 +	78	15793075	acpP	NMA0043	I	acyl carrier protein	
42	 59.94 +1    35272..36519    	 +	415	15793076	fabF	NMA0044	I	3-oxoacyl-[acyl-carrier-protein] synthase II	
43	 57.26       36762..37718    	 -	318	15793077	NMA0046	NMA0046	R	putative transmembrane transport protein	
44	 60.51 +1    38144..39361    	 +	405	15793078	NMA0047	NMA0047	G	putative transmembrane transport protein	
45	 46.56       39717..40850    	 +	377	15793079	pglA	NMA0048	M	glycosyltransferase	
46	 55.16       41790..42641    	 -	283	15793080	NMA0049	NMA0049	K	RNA polymerase sigma factor	
47	 58.28       42989..44503    	 +	504	15793081	katA	NMA0050	P	catalase	
48	 56.06       44683..45012    	 +	109	15793082	NMA0051	NMA0051	-	hypothetical protein NMA0051	
49	 59.44 +1    44988..45554    	 +	188	15793083	NMA0052	NMA0052	S	putative integral membrane protein	
50	 54.35       45672..45947    	 -	91	15793084	NMA0053	NMA0053	-	hypothetical protein NMA0053	
51	 56.60       45987..48023    	 -	678	15793085	prlC	NMA0054	E	oligopeptidase A	
52	 55.83       48111..49097    	 -	328	15793086	NMA0055	NMA0055	M	putative integral membrane protein	
53	 56.17       49253..51643    	 +	796	15793087	gyrB	NMA0056	L	DNA gyrase subunit B	
54	 60.68 +1    51962..53281    	 +	439	15793088	sdaA	NMA0057	E	L-serine dehydratase	
55	 55.69       54687..56663    	 -	658	15793089	NMA0060	NMA0060	P	putative transmembrane transport protein	
56	 63.45 +1    56812..57651    	 +	279	15793090	NMA0061	NMA0061	C	putative ferredoxin	
57	 56.59       57851..58882    	 +	343	15793091	gapA	NMA0062	G	glyceraldehyde 3-phosphate dehydrogenase	
58	 57.85       59138..59863    	 -	241	15793092	aat	NMA0063	O	leucyl/phenylalanyl-tRNA--protein transferase	
59	 51.95       59933..60367    	 -	144	15793093	fur	NMA0064	P	ferric uptake regulation protein	
60	 57.41       60586..60963    	 +	125	15793094	NMA0065	NMA0065	J	putative lipoprotein	
61	 61.23 +1    60973..61782    	 +	269	15793095	dapB	NMA0066	E	dihydrodipicolinate reductase	
62	 36.33 -2    62042..62341    	 -	99	15793096	NMA0067	NMA0067	-	hypothetical protein NMA0067	
63	 33.33 -2    62455..62700    	 -	81	15793097	NMA0068	NMA0068	-	hypothetical protein NMA0068	
64	 58.53       62708..63862    	 -	384	15793098	lpxB	NMA0069	M	lipid-A-disaccharide synthase	
65	 57.50       63928..64920    	 -	330	15793099	rluC	NMA0070	J	ribosomal large subunit pseudouridine synthase C	
66	 59.28 +1    65414..68173    	 +	919	15793100	rne	NMA0071	J	ribonuclease E	
67	 60.40 +1    68960..69949    	 -	329	15793101	pdxA	NMA0072	H	pyridoxal phosphate biosynthetic protein	
68	 55.60       70109..71536    	 +	475	15793102	NMA0073	NMA0073	E	putative amino-acid transport protein	
69	 57.55       71870..73756    	 +	628	15793103	gidA	NMA0074	D	glucose inhibited division protein A homolog	
70	 57.78       73825..74409    	 +	194	15793104	rnhB	NMA0075	L	ribonuclease HII	
71	 59.17 +1    75357..76130    	 -	257	15793105	NMA0076	NMA0076	D	parA family protein	
72	 56.89       76229..76852    	 -	207	15793106	gidB	NMA0077	M	glucose inhibited division protein B homolog	
73	 60.29 +1    76948..77433    	 -	161	15793107	NMA0078	NMA0078	-	putative integral membrane protein	
74	 61.79 +1    77843..78970    	 +	375	15793108	NMA0079	NMA0079	S	putative integral membrane protein	
75	 54.12       79151..79708    	 +	185	15793109	frr	NMA0080	J	ribosome recycling factor	
76	 54.48       79764..80510    	 +	248	15793110	uppS	NMA0081	I	putative undecaprenyl diphosphate synthase	
77	 56.39       80513..81310    	 +	265	15793111	cdsA	NMA0082	I	phosphatidate cytidylyltransferase	
78	 58.31       81366..82550    	 +	394	15793112	dxr	NMA0083	I	1-deoxy-D-xylulose 5-phosphate reductoisomerase	
79	 59.36 +1    82585..83925    	 +	446	15793113	NMA0084	NMA0084	M	putative integral membrane protein	
80	 56.14       83982..86375    	 +	797	15793114	omp85	NMA0085	M	outer membrane protein OMP85	
81	 53.29       86441..86941    	 +	166	15793115	NMA0086	NMA0086	M	putative outer membrane protein	
82	 59.96 +1    86974..88017    	 +	347	15793116	lpxD	NMA0087	M	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	
83	 57.56       88053..88502    	 +	149	15793117	fabZ	NMA0088	I	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	
84	 36.27 -2    88813..89493    	 +	226	15793118	NMA0089	NMA0089	-	hypothetical protein NMA0089	
85	 59.07 +1    89536..90312    	 +	258	15793119	lpxA	NMA0090	M	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam O-acyltransferase	
86	 53.95       90669..92060    	 +	463	15793120	NMA0091	NMA0091	E	putative amino-acid transporter	
87	 55.13       92139..93395    	 +	418	15793121	dadA	NMA0092	E	D-amino acid dehydrogenase small subunit	
88	 54.44       93576..94385    	 +	269	15793122	NMA0093	NMA0093	P	putative integral membrane protein	
89	 55.00       94482..97319    	 +	945	15793123	valS	NMA0094	J	valyl-tRNA synthetase	
90	 50.64       97474..97629    	 +	51	15793124	NMA0095	NMA0095	-	hypothetical protein NMA0095	
91	 50.77       97690..98079    	 -	129	15793125	NMA0096	NMA0096	-	hypothetical protein NMA0096	
92	 52.66       98653..99573    	 -	306	15793126	oxyR	NMA0098	K	putative hydrogen peroxide-inducible genes activator	
93	 43.94 -1    99577..99840    	 -	87	15793127	minE	NMA0099	D	putative cell division topological specificity factor	
94	 46.69       99844..100659   	 -	271	15793128	minD	NMA0100	D	septum site-determining protein	
95	 45.10      100688..101401   	 -	237	15793129	minC	NMA0101	D	putative cell division inhibitor	
96	 46.34      101548..101916   	 -	122	15793130	rplQ	NMA0102	J	50S ribosomal protein L17	
97	 42.45 -1   101940..102926   	 -	328	15793131	rpoA	NMA0103	K	DNA-directed RNA polymerase alpha chain	
98	 44.61 -1   102952..103572   	 -	206	15793132	rpsD	NMA0104	J	30S ribosomal protein S4	
99	 44.95      103592..103987   	 -	131	15793133	rpsK	NMA0105	J	30S ribosomal protein S11	
100	 46.56      104007..104369   	 -	120	15793134	rpsM	NMA0106	J	30S ribosomal protein S13	

 
 51.74 MEAN 
 
 7.10  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.