IslandPath Analysis: Mesorhizobium loti



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.95   STD DEV: 3.53
Mesorhizobium loti, complete genome - 0..7036074
6746 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 56.89 -1      287..1084     	 +	265	13470331	-	mlr0002	I	hypothetical protein	
2	 65.44        1006..2223     	 +	405	13470332	-	mlr0003	-	hypothetical protein	
3	 60.47        2253..2720     	 -	155	13470333	-	mll0004	O	bacterioferritin	
4	 65.04        2816..6196     	 +	1126	13470334	-	mlr0006	-	unknown protein	
5	 63.40        6203..7456     	 -	417	13470335	-	mll0007	J	tyrosyl-tRNA synthetase	
6	 64.06        7723..8490     	 +	255	13470336	-	mlr0009	M	unknown protein	
7	 57.96 -1     8483..8815     	 +	110	13470337	-	mlr0010	-	unknown protein	
8	 64.12        8856..10505    	 +	549	13470338	-	mlr0011	M	hypothetical protein	
9	 63.81       10632..11366    	 +	244	13470339	-	mlr0012	I	hypothetical protein	
10	 65.13       11379..12029    	 -	216	13470340	-	mll0013	K	transcriptional regulator	
11	 61.86       12051..12737    	 -	228	13470341	-	mll0014	R	hypothetical protein	
12	 66.15       12964..14127    	 +	387	13470342	-	mlr0015	E	nitrogenase cofactor synthesis protein nifS	
13	 59.62       14316..15833    	 +	505	13470325	-	mlr0016	R	ABC transporter subunit	
14	 52.82 -2    15830..16450    	 +	206	13470343	-	mlr0017	-	unknown protein	
15	 61.64       16552..17307    	 +	251	13470344	-	mlr0019	R	ABC transporter ATP-binding protein	
16	 64.04       17309..18601    	 +	430	13470345	-	mlr0020	R	hypothetical protein	
17	 61.11       18713..19954    	 +	413	13470346	-	mlr0021	E	nifS-like aminotransferase	
18	 63.95       19951..20355    	 +	134	13470347	-	mlr0023	R	hypothetical protein	
19	 61.61       20404..20838    	 +	144	13470348	-	mlr0024	S	HesB-like protein	
20	 63.45       20875..21372    	 -	165	13470349	-	mll0025	S	hypothetical protein	
21	 64.20       21462..21785    	 +	107	13470350	-	mlr0026	N	hypothetical protein	
22	 65.90       21787..22704    	 -	305	13470351	-	mll0028	Q	hypothetical protein	
23	 68.47 +1    22778..23722    	 -	314	13470352	-	mll0029	G	carbohydrate kinase	
24	 63.30       24004..25101    	 +	365	13470353	-	mlr0030	L	recombination protein recA	
25	 65.95       25362..28028    	 +	888	13470354	-	mlr0032	J	alanyl-tRNA synthetase	
26	 63.59       28039..28395    	 +	118	13470355	-	mlr0033	M	hypothetical protein	
27	 63.80       28427..29053    	 -	208	13470356	-	mll0034	O	glutathione S-transferase III	
28	 60.15       29133..30344    	 -	403	13470357	-	mll0036	C	NADP-dependent isocitrate dehydrogenase	
29	 62.65       30662..31606    	 -	314	13470358	-	mll0037	-	probable outer membrane protein B (OmpB)	
30	 66.01       32191..33102    	 +	303	13470359	-	mlr0038	J	RNA methyltransferase	
31	 64.74       33053..33883    	 +	276	13470360	-	mlr0039	M	glutamate racemase	
32	 65.37       33966..35348    	 -	460	13470330	-	mll0040	K	ribonuclease	
33	 57.67 -1    35512..35700    	 +	62	13470361	-	msr0042	-	unknown protein	
34	 60.54       35797..36057    	 -	86	13470362	-	msl0044	-	unknown protein	
35	 61.65       36362..36979    	 +	205	13470363	-	mlr0045	J	30S ribosomal protein S4	
36	 62.50       37184..37999    	 +	271	13470364	-	mlr0047	D	hypothetical protein	
37	 65.82       37989..38816    	 +	275	13470365	-	mlr0048	G	monophosphatase-like protein	
38	 62.99       38893..39300    	 +	135	13470328	-	msr0050	-	unknown protein	
39	 62.62       39311..40495    	 -	394	13470366	-	mll0051	G	bicyclomycin resistance protein	
40	 57.74 -1    40724..41059    	 -	111	13470367	-	mll0053	O	hypothetical protein	
41	 61.97       41212..41445    	 -	77	13470368	-	msl0055	T	hypothetical protein	
42	 61.82       41568..41918    	 -	116	13470369	-	mll0056	-	unknown protein	
43	 65.59       42089..44320    	 -	743	13470370	-	mll0057	F	phosphoribosylformylglycinamide synthetase	
44	 59.26 -1    44471..44740    	 +	89	13470371	-	msr0058	-	unknown protein	
45	 65.89       44756..46168    	 -	470	13470372	-	mll0059	K	transcriptional regulator	
46	 61.51       46262..46513    	 +	83	13470373	-	msr0060	-	unknown protein	
47	 63.27       46523..46816    	 -	97	13470374	-	mll0061	-	hypothetical protein	
48	 63.89       47167..47490    	 -	107	13470375	-	mll0062	-	unknown protein	
49	 62.46       47571..48236    	 -	221	13470376	-	mll0063	O	glutathione transferase	
50	 64.13       48307..48975    	 -	222	13470377	-	mll0065	F	phosphoribosylformylglycinamidine synthase	
51	 59.92       49247..49498    	 -	83	13470378	-	msl0067	F	hypothetical protein	
52	 60.75       49533..50327    	 -	264	13470379	-	mll0069	F	phosphoribosylaminoimidazole-succinocarboxamide synthase	
53	 60.12       50603..50923    	 +	106	13470380	-	mlr0071	-	hypothetical protein	
54	 63.31       51088..51861    	 +	257	13470381	-	mlr0073	G	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	
55	 60.36       51900..53024    	 -	374	13470382	-	mll0074	I	hypothetical protein	
56	 63.75       53249..53797    	 -	182	13470383	-	mll0076	R	hypothetical protein	
57	 65.44       54043..54855    	 +	270	13470384	-	mlr0078	R	hypothetical protein	
58	 63.00       54935..56242    	 -	435	13470385	-	mll0079	F	adenylosuccinate lyase	
59	 62.62       56401..56919    	 -	172	13470386	-	mll0080	-	unknown protein	
60	 63.56       56916..57590    	 -	224	13470387	-	mll0081	-	hypothetical protein	
61	 58.82 -1    57770..58024    	 +	84	13470388	-	msr0083	S	hypothetical protein	
62	 67.45 +1    58034..59059    	 -	341	13470389	-	mll0085	E	hypothetical protein	
63	 67.04 +1    59059..60126    	 -	355	13470390	-	mll0086	E	amino acid binding protein	
64	 61.36       60308..60835    	 +	175	13470391	-	mlr0087	R	monooxygenase	
65	 63.76       60832..61761    	 +	309	13470392	-	mlr0088	R	hypothetical protein	
66	 65.48       61766..63031    	 +	421	13470393	-	mlr0089	R	hypothetical protein	
67	 64.31       63082..63420    	 +	112	13470394	-	mlr0091	O	hypothetical protein	
68	 64.77       63427..64164    	 +	245	13470395	-	mlr0092	O	hypothetical protein	
69	 66.73 +1    64231..65841    	 +	536	13470396	-	mlr0093	R	hypothetical protein	
70	 61.78       65874..66773    	 +	299	13470397	-	mlr0094	-	unknown protein	
71	 59.83       66795..67847    	 -	350	13470398	-	mll0095	-	hypothetical protein	
72	 60.30       67898..68494    	 +	198	13470399	-	mlr0096	S	hypothetical protein	
73	 59.14 -1    68666..68758    	 +	30	13470400	-	msr0098	-	unknown protein	
74	 68.09 +1    69421..69561    	 +	46	13470401	-	msr0099	-	unknown protein	
75	 61.61       69673..70740    	 +	355	13470402	-	mlr0100	C	oxidoreductase	
76	 62.68       70772..72049    	 +	425	13470403	-	mlr0102	E	aminotransferase	
77	 64.04       72065..73093    	 -	342	13470404	-	mll0103	T	acetylpolyamine aminohydrolase	
78	 59.77       73090..73611    	 -	173	13470405	-	mll0104	K	acetyltransferase	
79	 62.10       73615..74118    	 -	167	13470406	-	mll0105	S	hypothetical protein	
80	 63.87       74139..75068    	 -	309	13470407	-	mll0106	S	hypothetical protein	
81	 65.08       75072..76457    	 -	461	13470408	-	mll0107	H	aminotransferase	
82	 64.41       76459..78006    	 -	515	13470409	-	mll0108	-	hypothetical protein	
83	 60.92       78156..78503    	 +	115	13470410	-	mlr0109	K	unknown protein	
84	 59.79       78525..79106    	 +	193	13470411	-	mlr0110	S	hypothetical protein	
85	 64.24       79141..80169    	 -	342	13470412	-	mll0111	R	oxidoreductase	
86	 63.41       80276..80674    	 +	132	13470413	-	mlr0112	S	hypothetical protein	
87	 65.04       80792..81037    	 +	81	13470414	-	msr0114	-	unknown protein	
88	 65.23       81044..81949    	 -	301	13470415	-	mll0115	-	unknown protein	
89	 65.66       82193..82987    	 +	264	13470416	-	mlr0116	S	integral membrane lipid kinase-like protein	
90	 60.92       83132..83740    	 +	202	13470417	-	mlr0118	S	hypothetical protein	
91	 62.88       83867..84658    	 +	263	13470418	-	mlr0120	S	hypothetical protein	
92	 66.51 +1    84642..85283    	 -	213	13470419	-	mll0121	S	hypothetical protein	
93	 63.05       85308..86357    	 -	349	13470420	-	mll0122	-	unknown protein	
94	 55.39 -2    86439..86642    	 -	67	13470421	-	msl0124	-	unknown protein	
95	 65.62       86650..87603    	 +	317	13470422	-	mlr0125	M	lysozyme	
96	 56.32 -1    87751..88011    	 +	86	13470423	-	mlr0127	-	unknown protein	
97	 63.02       88242..88625    	 -	127	13470424	-	mll0128	E	hypothetical protein	
98	 61.95       88658..89569    	 -	303	13470425	-	mll0129	K	transcriptional activator AmpR	
99	 59.26 -1    89576..89818    	 -	80	13470426	-	msl0131	-	unknown protein	
100	 63.04       89882..90487    	 +	201	13470427	-	mlr0132	Q	hypothetical protein	

 
 62.95 MEAN 
 
 3.53  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.