IslandPath Analysis: Fusobacterium nucleatum subsp. Nucleatum ATCC25586



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.95   STD DEV: 3.78
Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome - 0..2174500
2067 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 17.78 -2  	-12..77       	 -	29	19704827	-	FN1495	-	unknown	
2	 27.49          77..709      	 -	210	19704828	-	FN1496	-	Rod shape-determining protein mreC	
3	 24.36        1104..2228     	 -	374	19704829	-	FN1497	-	Multidrug resistance protein 2	
4	 28.44        2703..3602     	 +	299	19704830	-	FN1498	-	Integral membrane protein	
5	 32.36 +1     3787..5226     	 +	479	19704831	-	FN1499	-	Cell surface protein	
6	 25.17        5283..6017     	 -	244	19704832	-	FN1500	-	Nickel transport ATP-binding protein nikE	
7	 24.39        6018..6800     	 -	260	19704833	-	FN1501	-	Nickel transport ATP-binding protein nikD	
8	 27.94        6797..7612     	 -	271	19704834	-	FN1502	-	Nickel transport system permease protein nikC	
9	 26.09        7593..8531     	 -	312	19704835	-	FN1503	-	Nickel transport system permease protein nikB	
10	 28.55        8537..10105    	 -	522	19704836	-	FN1504	-	Nickel-binding protein	
11	 30.17       10536..11009    	 +	157	19704837	-	FN1505	-	6,7-dimethyl-8-ribityllumazine synthase	
12	 30.18       11011..12120    	 +	369	19704838	-	FN1506	-	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	
13	 28.57       12213..12968    	 +	251	19704839	-	FN1507	-	Riboflavin synthase alpha chain	
14	 30.67       12978..14177    	 +	399	19704840	-	FN1508	-	GTP cyclohydrolase II	
15	 28.21       14189..14266    	 -	25	19704841	-	FN1509	-	unknown	
16	 11.11 -2    14321..14401    	 -	26	19704842	-	FN1510	-	unknown	
17	 25.51       14357..15838    	 +	493	19704843	-	FN1511	-	Transposase	
18	 24.77       15985..17175    	 +	396	19704844	-	FN1512	-	Phophatidylinositol-4-phosphate 5-kinase	
19	 22.69 -1    17147..17362    	 +	71	19704845	-	FN1513	-	Phophatidylinositol-4-phosphate 5-kinase	
20	 24.47       17516..19027    	 +	503	19704846	-	FN1514	-	Phophatidylinositol-4-phosphate 5-kinase	
21	 23.02 -1    19045..20712    	 +	555	19704847	-	FN1515	-	Phophatidylinositol-4-phosphate 5-kinase	
22	 23.08 -1    20754..20948    	 -	64	19704848	-	FN1516	-	unknown	
23	 29.65       20966..23545    	 -	859	19704849	-	FN1517	-	Leucyl-tRNA synthetase	
24	 26.18       23553..24167    	 -	204	19704850	-	FN1518	-	RNA polymerase sigma-H factor	
25	 27.38       24178..24882    	 -	234	19704851	-	FN1519	-	23S rRNA methyltransferase	
26	 32.08 +1    24892..26163    	 -	423	19704852	-	FN1520	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	
27	 30.78 +1    26528..27466    	 +	312	19704853	-	FN1521	-	Dipeptide transport system permease protein dppB	
28	 31.05 +1    27467..28297    	 +	276	19704854	-	FN1522	-	Dipeptide transport system permease protein dppC	
29	 30.99 +1    28347..29927    	 +	526	19704855	-	FN1523	-	Dipeptide-binding protein	
30	 31.68 +1    29939..30724    	 +	261	19704856	-	FN1524	-	Dipeptide transport ATP-binding protein dppD	
31	 29.83       30663..31691    	 +	342	19704857	-	FN1525	-	Dipeptide transport ATP-binding protein dppF	
32	 31.47 +1    31842..38273    	 -	2143	19704858	-	FN1526	-	Fusobacterium outer membrane protein family	
33	 28.21       42273..42662    	 -	129	19704859	-	FN1527	-	Hypothetical protein	
34	 27.17       42678..43034    	 -	118	19704860	-	FN1528	-	Hypothetical protein	
35	 23.92       43083..43454    	 -	123	19704861	-	FN1529	-	Hypothetical protein	
36	 27.73       43765..44121    	 +	118	19704862	-	FN1530	-	Transposase	
37	 29.66       44326..45060    	 -	244	19704863	-	FN1531	-	Negative regulator of murein hydrolase	
38	 30.47       45026..45409    	 -	127	19704864	-	FN1532	-	murein hydrolase exporter	
39	 30.35       45440..46411    	 -	323	19704865	-	FN1533	-	Electron transfer flavoprotein alpha-subunit	
40	 31.41 +1    46423..47202    	 -	259	19704866	-	FN1534	-	Electron transfer flavoprotein beta-subunit	
41	 32.72 +1    47214..48350    	 -	378	19704867	-	FN1535	-	Acyl-CoA dehydrogenase, short-chain specific	
42	 32.14 +1    48381..49808    	 -	475	19704868	-	FN1536	-	(S)-2-hydroxy-acid oxidase chain D	
43	 27.93       50036..51202    	 -	388	19704869	-	FN1537	-	Arsenical pump-driving ATPase	
44	 26.87       51199..52389    	 -	396	19704870	-	FN1538	-	Arsenical pump-driving ATPase	
45	 34.96 +2    52601..53152    	 +	183	19704871	-	FN1539	-	Iron-sulfur cluster-binding protein	
46	 33.19 +1    53195..55354    	 +	719	19704872	-	FN1540	-	Iron-sulfur cluster-binding protein	
47	 28.85       55355..56335    	 +	326	19704873	-	FN1541	-	Heptaprenyl diphosphate synthase component II	
48	 29.53       56332..57252    	 +	306	19704874	-	FN1542	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	
49	 26.44       57254..57949    	 +	231	19704875	-	FN1543	-	Ubiquinone/menaquinone biosynthesis methyltransferase UBIE	
50	 35.80 +2    57975..59270    	 +	431	19704876	-	FN1544	-	Probable electron transfer flavoprotein-quinone oxidoreductase ydiS	
51	 28.77       59273..59557    	 +	94	19704877	-	FN1545	-	Ferredoxin like protein	
52	 30.34       59619..61691    	 -	690	19704878	-	FN1546	-	Protein Translation Elongation Factor G (EF-G)	
53	 31.97 +1    61891..63360    	 -	489	19704879	-	FN1547	-	PTS permease for N-acetylglucosamine and glucose	
54	 25.90       63594..64010    	 +	138	19704880	-	FN1548	-	Hypothetical protein	
55	 29.72       64029..64913    	 +	294	19704881	-	FN1549	-	Stomatin like protein	
56	 24.06       64977..65720    	 -	247	19704882	-	FN1550	-	Hypothetical protein	
57	 19.48 -1    65744..66277    	 -	177	19704883	-	FN1551	-	Hypothetical protein	
58	 22.96 -1    66291..67235    	 -	314	19704884	-	FN1552	-	Hypothetical protein	
59	 23.54       67240..68628    	 -	462	19704885	-	FN1553	-	Transporter	
60	 30.97 +1    68809..73557    	 -	1582	19704886	-	FN1554	-	Fusobacterium outer membrane protein family	
61	 35.95 +2    76342..77526    	 -	394	19704887	-	FN1555	-	Protein Translation Elongation Factor Tu	
62	 34.39 +1    77615..79696    	 -	693	19704888	-	FN1556	-	Protein Translation Elongation Factor G (EF-G)	
63	 31.21 +1    79742..80212    	 -	156	19704889	-	FN1557	-	SSU ribosomal protein S7P	
64	 35.23 +2    80240..80608    	 -	122	19704890	-	FN1558	-	SSU ribosomal protein S12P	
65	 26.64       80967..82550    	 +	527	19704891	-	FN1559	-	Na(+)/H(+) antiporter	
66	 28.37       82569..83072    	 -	167	19704892	-	FN1560	-	unknown	
67	 23.05 -1    83122..83850    	 -	242	19704893	-	FN1561	-	Hypothetical cytosolic protein	
68	 28.66       83850..84854    	 -	334	19704894	-	FN1562	-	Phospho-2-dehydro-3-deoxyheptonate aldolase	
69	 22.73 -1    84867..85130    	 -	87	19704895	-	FN1563	-	Hypothetical protein	
70	 23.43       86283..86585    	 -	100	19704896	-	FN1575	-	Hypothetical cytosolic protein	
71	 22.30 -1    86595..87464    	 -	289	19704897	-	FN1576	-	ATPases and helicase subunits involved in DNA replication	
72	 31.78 +1    87467..88495    	 -	342	19704898	-	FN1577	-	Rod shape-determining protein mreB	
73	 26.41       88497..88886    	 -	129	19704899	-	FN1578	-	Hypothetical protein	
74	 29.54       88874..90295    	 -	473	19704900	-	FN1579	-	Cysteinyl-tRNA synthetase	
75	 24.86       90314..91009    	 -	231	19704901	-	FN1580	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	
76	 28.54       90985..93321    	 -	778	19704902	-	FN1581	-	DNA mismatch repair protein mutS	
77	 30.27       93677..95047    	 -	456	19704903	-	FN1582	-	Hypothetical protein	
78	 29.10       95129..95482    	 -	117	19704904	-	FN1583	-	Hypothetical protein	
79	 25.66       95454..96248    	 -	264	19704905	-	FN1584	-	Beta-lactamase	
80	 33.67 +1    96303..97484    	 -	393	19704906	-	FN1585	-	Hypothetical protein	
81	 31.56 +1    97505..98632    	 -	375	19704907	-	FN1586	-	O-succinylbenzoate-CoA synthase	
82	 19.81 -1    98981..99394    	 +	137	19704908	-	FN1587	-	Acetyltransferase	
83	 14.20 -2    99696..99857    	 +	53	19704909	-	FN1588	-	unknown	
84	 26.21       99932..100591   	 +	219	19704910	-	FN1589	-	LexA repressor	
85	 33.73 +1   100650..101894   	 -	414	19704911	-	FN1590	-	Hypothetical lipoprotein	
86	 34.28 +1   102068..103225   	 -	385	19704912	-	FN1591	-	RNFB-related protein	
87	 31.11 +1   103252..103836   	 -	194	19704913	-	FN1592	-	Na(+)-translocating NADH-quinone reductase subunit D	
88	 29.94      103833..104450   	 -	205	19704914	-	FN1593	-	RnfE protein	
89	 33.33 +1   104450..104983   	 -	177	19704915	-	FN1594	-	Nitrogen fixation protein RNFG	
90	 33.97 +1   104973..105917   	 -	314	19704916	-	FN1595	-	Na(+)-translocating NADH-quinone reductase subunit B	
91	 33.71 +1   105943..107268   	 -	441	19704917	-	FN1596	-	Nitrogen fixation iron-sulphur protein RNFC	
92	 26.91      107325..107900   	 -	191	19704918	-	FN1597	-	Peptidyl-tRNA hydrolase	
93	 21.84 -1   108069..108242   	 -	57	19704919	-	FN1598	-	Hypothetical protein	
94	 20.12 -1   108367..108873   	 -	168	19704920	-	FN1599	-	Hypothetical protein	
95	 26.08      109159..109902   	 -	247	19704921	-	FN1600	-	tRNA pseudouridine synthase A	
96	 27.67      109922..110998   	 -	358	19704922	-	FN1601	-	Hypothetical cytosolic protein	
97	 27.39      111112..111582   	 -	156	19704923	-	FN1602	-	Hypothetical cytosolic protein	
98	 24.81      111700..113751   	 -	683	19704924	-	FN1603	-	2',3'-cyclic nucleotide 3'-phosphodiesterase	
99	 28.48      113748..113912   	 -	54	19704925	-	FN1604	-	unknown	
100	 31.30 +1   114089..115366   	 -	425	19704926	-	FN1605	-	Adenylosuccinate synthetase	

 
 26.95 MEAN 
 
 3.78  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.