IslandPath Analysis: Clostridium tetani E88



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.95   STD DEV: 3.58
Clostridium tetani E88, complete genome - 0..2799251
2373 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 28.08           1..2304     	 -	767	28209835	mecB	CTC00060	-	negative regulator of genetic competence mecB	
2	 27.56        2487..3923     	 +	478	28209836	-	CTC00061	-	putative cardiolipin synthetase 2	
3	 27.20        4027..4548     	 +	173	28209837	-	CTC00062	-	DNA polymerase, bacteriophage-type	
4	 25.85        4584..5144     	 -	186	28209838	-	CTC00064	-	hypothetical protein	
5	 53.58 +2     5938..6594     	 +	218	28209839	-	CTC00065	-	hypothetical protein	
6	 22.48 -1    10753..11397    	 +	214	28209840	-	CTC00066	-	conserved protein	
7	 23.94 -1    12432..13208    	 -	258	28209841	-	CTC00067	-	putative polyferredoxin	
8	 29.13       13557..14816    	 +	419	28209842	-	CTC00068	-	conserved protein	
9	 30.30       14871..15398    	 -	175	28209843	-	CTC00069	-	predicted NADH pyrophosphatase	
10	 27.56       15446..16138    	 -	230	28209844	-	CTC00070	-	sugar fermentation stimulation protein	
11	 31.78       16325..17551    	 -	408	28209845	-	CTC00071	-	threonine dehydratase biosynthetic	
12	 27.47       17824..19581    	 -	585	28209846	-	CTC00072	-	signal-transduction and transcriptional-control protein	
13	 32.33       20790..21386    	 -	198	28209847	recR	CTC00073	-	recombination protein recR	
14	 35.38 +1    21414..21755    	 -	113	28209848	-	CTC00074	-	transcriptional regulatory protein	
15	 28.63       21830..23488    	 -	552	28209849	-	CTC00075	-	DNA polymerase III subunits gamma and tau	
16	 20.24 -2    24825..25397    	 -	190	28209850	-	CTC00077	-	hypothetical protein	
17	 30.16       25611..26051    	 -	146	28209851	-	CTC00078	-	cytosine deaminase	
18	 26.81       26462..27028    	 -	188	28209852	tetR	CTC00079	-	transcriptional regulator, tetR family	
19	 22.93 -1    27169..28062    	 +	297	28209853	-	CTC00080	-	putative phosphatidylserine decarboxylase proenzyme	
20	 31.38       28683..29963    	 -	426	28209854	-	CTC00081	-	seryl-tRNA synthetase	
21	 28.11       30264..30665    	 -	133	28209855	-	CTC00082	-	conserved protein	
22	 27.73       30658..32085    	 -	475	28209856	-	CTC00083	-	dehydrogenase, FAD-dependent	
23	 21.88 -1    32094..34310    	 -	738	28209857	-	CTC00084	-	sensor histidine kinase	
24	 24.51 -1    34405..37068    	 -	887	28209858	-	CTC00086	-	conserved membrane protein	
25	 27.88       37111..37623    	 -	170	28209859	-	CTC00087	-	transcriptional regulator	
26	 21.43 -2    37641..38144    	 -	167	28209860	-	CTC00088	-	conserved protein	
27	 53.58 +2    39024..39680    	 +	218	28209861	-	CTC00089	-	hypothetical protein	
28	 31.33       43745..46186    	 -	813	28209862	-	CTC00090	-	DNA gyrase subunit A	
29	 32.08       46198..48111    	 -	637	28209863	-	CTC00091	-	DNA gyrase subunit B	
30	 25.07 -1    48425..49537    	 -	370	28209864	recF	CTC00092	-	recFprotein	
31	 26.36       49861..50964    	 -	367	28209865	-	CTC00093	-	DNA polymerase III, beta chain	
32	 29.64       51225..52253    	 -	342	28209866	dnaA	CTC00094	-	chromosomal replication initiator protein dnaA	
33	 27.75       53836..54498    	 +	220	28209867	-	CTC00096	-	conserved membrane protein	
34	 30.86       54491..55138    	 +	215	28209868	-	CTC00097	-	conserved protein, JAG-family	
35	 28.04       55193..56572    	 +	459	28209869	thdF	CTC00098	-	thiophene and furan oxidation protein thdF	
36	 30.72       56582..58453    	 +	623	28209870	-	CTC00099	-	glucose inhibited division protein A	
37	 25.83       58475..59194    	 +	239	28209871	-	CTC00100	-	glucose inhibited division protein B	
38	 25.86       59273..60088    	 +	271	28209872	-	CTC00101	-	stage 0 sporulation protein J	
39	 29.43       60176..60970    	 +	264	28209873	parA	CTC00102	-	chromosome partitioning protein parA	
40	 28.09       60963..61820    	 +	285	28209874	parB	CTC00103	-	chromosome partitioning protein parB	
41	 26.10       61860..62357    	 +	165	28209875	-	CTC00104	-	conserved protein	
42	 29.17       62379..62954    	 -	191	28209876	-	CTC00105	-	conserved protein	
43	 22.54 -1    63010..64065    	 -	351	28209877	-	CTC00106	-	conserved membrane protein	
44	 26.21       64302..65186    	 +	294	28209878	aefA	CTC00107	-	aefA protein	
45	 34.47 +1    65777..66214    	 +	145	28209879	-	CTC00108	-	single-strand binding protein	
46	 28.30       66688..67005    	 +	105	28209880	-	CTC00109	-	conserved protein	
47	 23.54 -1    67019..68008    	 +	329	28209881	-	CTC00110	-	conserved protein	
48	 27.02       68021..70015    	 +	664	28209882	-	CTC00111	-	MGPA protein	
49	 26.13       70012..70455    	 +	147	28209883	-	CTC00112	-	LSU ribosomal protein L9P	
50	 30.52       70474..72360    	 +	628	28209884	-	CTC00113	-	ATP-dependent protease LA	
51	 32.36       72416..73750    	 +	444	28209885	-	CTC00114	-	replicative DNA helicase	
52	 27.85       73857..75389    	 +	510	28209886	-	CTC00115	-	hypothetical protein	
53	 25.05 -1    75542..76000    	 +	152	28209887	-	CTC00116	-	chorismate mutase	
54	 23.92 -1    76265..76795    	 -	176	28209888	-	CTC00117	-	phosphatidylglycerophosphate synthase	
55	 30.85       76996..78405    	 +	469	28209889	-	CTC00118	-	NAD(FAD)-utilizing dehydrogenase	
56	 24.11 -1    78842..79600    	 +	252	28209890	-	CTC00119	-	acyl-acyl carrier protein thioesterase	
57	 28.95       79615..80892    	 -	425	28209891	-	CTC00120	-	NAD(FAD)-utilizing dehydrogenase	
58	 27.32       80957..81355    	 +	132	28209892	-	CTC00121	-	conserved protein	
59	 30.88       81362..82177    	 +	271	28209893	-	CTC00122	-	ATP/GTP-binding protein	
60	 25.96       82777..83766    	 -	329	28209894	dnaC	CTC00123	-	DNA replication protein dnaC	
61	 27.08       83763..84737    	 -	324	28209895	dnaD	CTC00124	-	DNA replication protein dnaD	
62	 30.24       84888..85955    	 +	355	28209896	-	CTC00125	-	conserved protein	
63	 26.54       85948..86403    	 +	151	28209897	marR	CTC00126	-	transcriptional regulator, marR family	
64	 29.45       86418..87422    	 +	334	28209898	-	CTC00127	-	3-oxoacyl-[acyl-carrier-protein] synthase III	
65	 34.06 +1    87656..88618    	 +	320	28209899	-	CTC00128	-	enoyl-[acyl-carrier protein] reductase (NADH)	
66	 30.56       88611..89549    	 +	312	28209900	-	CTC00129	-	malonyl coA-acyl carrier protein transacylase	
67	 29.23       89557..90312    	 +	251	28209901	-	CTC00130	-	3-oxoacyl-[acyl-carrier protein] reductase	
68	 32.93 +1    90333..91577    	 +	414	28209902	-	CTC00131	-	3-oxoacyl-(acyl-carrier-protein) synthase II	
69	 26.80       91580..92038    	 +	152	28209903	-	CTC00132	-	biotin carboxyl carrier protein of acetyl-coA carboxylase	
70	 32.17       92073..92501    	 +	142	28209904	-	CTC00133	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	
71	 32.21       92509..93849    	 +	446	28209905	-	CTC00134	-	biotin carboxylase	
72	 30.38       93861..95588    	 +	575	28209906	-	CTC00135	-	acetyl-coA carboxylase carboxyl transferase subunit beta/alpha	
73	 27.86       95696..96115    	 +	139	28209907	-	CTC00136	-	tranposase-like	
74	 27.90       96112..97032    	 +	306	28209908	-	CTC00137	-	transposase	
75	 30.39       97100..97609    	 -	169	28209909	-	CTC00138	-	ferritin	
76	 29.23       97682..98875    	 -	397	28209910	-	CTC00139	-	intracellular alkaline serine protease	
77	 28.85       98954..99421    	 -	155	28209911	-	CTC00140	-	conserved membrane protein	
78	 28.05       99484..99975    	 -	163	28209912	-	CTC00141	-	conserved protein	
79	 26.20      100302..100904   	 +	200	28209913	-	CTC00142	-	conserved protein, ferredoxin-related	
80	 31.54      100960..102351   	 -	463	28209914	-	CTC00143	-	asparaginyl-tRNA synthetase	
81	 29.49      102883..103350   	 +	155	28209915	-	CTC00144	-	acetyltransferase	
82	 27.54      103488..104177   	 +	229	28209916	ccdA	CTC00145	-	cytochrome c-type biogenesis protein ccdA	
83	 26.95      104184..104747   	 +	187	28209917	tlpA	CTC00146	-	thiol:disulfide interchange protein tlpA	
84	 29.07      104842..105591   	 -	249	28209918	-	CTC00147	-	stationary-phase survival protein sure	
85	 27.05      105626..106564   	 -	312	28209919	-	CTC00148	-	transporter	
86	 29.29      106667..107161   	 +	164	28209920	-	CTC00149	-	peptide methionine sulfoxide reductase	
87	 24.11 -1   107204..108049   	 -	281	28209921	-	CTC00150	-	conserved membrane protein	
88	 27.20      108080..109057   	 -	325	28209922	-	CTC00151	-	biotin synthase	
89	 29.29      109200..110387   	 +	395	28209923	-	CTC00152	-	putative amidohydrolase	
90	 26.98      110388..111269   	 -	293	28209924	-	CTC00153	-	transcriptional regulatory protein	
91	 32.16      111391..112581   	 +	396	28209925	-	CTC00154	-	conserved protein	
92	 26.27      112660..113367   	 -	235	28209926	-	CTC00155	-	tRNA pseudouridine synthase A	
93	 19.07 -2   113407..113967   	 -	186	28209927	-	CTC00156	-	hypothetical protein	
94	 23.89 -1   113969..114868   	 -	299	28209928	-	CTC00157	-	hypothetical protein	
95	 33.00 +1   115152..115748   	 +	198	28209929	-	CTC00158	-	superoxide dismutase [Fe]	
96	 24.30 -1   115815..116744   	 -	309	28209930	-	CTC00159	-	sensory transduction protein kinase	
97	 27.89      116754..117524   	 -	256	28209931	-	CTC00160	-	hypothetical protein	
98	 28.46      117502..118425   	 -	307	28209932	-	CTC00162	-	ABC-type multidrug transport system	
99	 27.89      118508..119224   	 -	238	28209933	-	CTC00163	-	transcriptional regulatory protein	
100	 25.93      120071..120745   	 +	224	28209934	-	CTC00164	-	putative fibronectin-binding protein	

 
 28.95 MEAN 
 
 3.58  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.