IslandPath Analysis: Vibrio vulnificus YJ016 chromosome II



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.09   STD DEV: 4.03
Vibrio vulnificus YJ016 chromosome II, complete sequence - 0..1857073
1696 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 47.44      192..2162     	 +	656	37675661	-	VVA0001	-	conserved hypothetical protein	
2	 47.86        2516..2983     	 -	155	37675662	-	VVA0002	-	conserved hypothetical protein	
3	 48.98        2983..3915     	 -	310	37675663	-	VVA0003	-	ABC-type oligopeptide transport system, ATPase component	
4	 49.76        3918..4763     	 -	281	37675664	-	VVA0004	-	peptide ABC transporter, ATP-binding protein	
5	 44.95        5114..5311     	 +	65	37675665	-	VVA0005	-	conserved hypothetical protein	
6	 49.55        5457..6560     	 +	367	37675666	-	VVA0006	-	GTP cyclohydrolase II	
7	 44.97        6605..7360     	 -	251	37675667	-	VVA0007	-	hypothetical protein	
8	 48.74        7436..9376     	 +	646	37675668	-	VVA0008	-	signal transduction histidine kinase	
9	 44.76        9536..9745     	 +	69	37675669	-	VVA0009	-	conserved hypothetical protein	
10	 46.16        9876..10592    	 +	238	37675670	-	VVA0010	-	uncharacterized conserved protein	
11	 48.78       10627..10872    	 -	81	37675671	-	VVA0011	-	hypothetical protein	
12	 50.48       10912..11856    	 +	314	37675672	-	VVA0012	-	transcriptional regulator	
13	 51.02       11896..12681    	 +	261	37675673	-	VVA0013	-	conserved hypothetical protein	
14	 52.16 +1    12692..13387    	 +	231	37675674	-	VVA0014	-	ABC-type antimicrobial peptide transport system, ATPase component	
15	 51.97 +1    13375..14640    	 +	421	37675675	-	VVA0015	-	uncharacterized protein conserved in bacteria	
16	 50.45       14633..15403    	 +	256	37675676	-	VVA0016	-	conserved hypothetical protein	
17	 53.93 +1    15423..16757    	 +	444	37675677	-	VVA0017	-	conserved hypothetical protein	
18	 49.28       16758..17861    	 +	367	37675678	-	VVA0018	-	predicted signal transduction protein	
19	 50.84       17858..18628    	 +	256	37675679	-	VVA0019	-	response regulator	
20	 54.55 +1    18446..18610    	 -	54	37675680	-	VVA0020	-	hypothetical protein	
21	 49.46       18839..20500    	 -	553	37675681	-	VVA0021	-	methyl-accepting chemotaxis protein	
22	 46.22       20714..21520    	 -	268	37675682	-	VVA0022	-	hypothetical protein	
23	 49.66       21685..21831    	 -	48	37675683	-	VVA0023	-	hypothetical protein	
24	 47.92       22128..23354    	 +	408	37675684	-	VVA0024	-	sodium/glutamate symporter	
25	 40.85 -1    23325..23537    	 -	70	37675685	-	VVA0025	-	hypothetical protein	
26	 47.11       23815..25041    	 +	408	37675686	-	VVA0026	-	sodium/glutamate symporter	
27	 48.56       25197..26063    	 +	288	37675687	-	VVA0027	-	conserved hypothetical protein	
28	 46.07       26168..26968    	 -	266	37675688	-	VVA0028	-	glucosamine-6-phosphate isomerase	
29	 44.93       27266..27541    	 +	91	37675689	-	VVA0029	-	conserved hypothetical protein	
30	 49.35       27604..29607    	 -	667	37675690	-	VVA0030	-	conserved hypothetical protein	
31	 47.93       29588..30628    	 -	346	37675691	-	VVA0031	-	putative glutathione synthase	
32	 44.44       30628..30987    	 -	119	37675692	-	VVA0032	-	uncharacterized protein conserved in bacteria	
33	 48.11       31137..32036    	 +	299	37675693	-	VVA0033	-	transcriptional regulator	
34	 45.59       32170..32373    	 -	67	37675694	-	VVA0034	-	hypothetical protein	
35	 52.56 +1    32578..32733    	 -	51	37675695	-	VVA0036	-	hypothetical protein	
36	 49.31       32684..34129    	 +	481	37675696	-	VVA0035	-	adenosine deaminase	
37	 50.00       34131..34616    	 +	161	37675697	-	VVA0037	-	methylated DNA-protein cysteine methyltransferase	
38	 44.33       34799..35407    	 -	202	37675698	-	VVA0038	-	uncharacterized conserved protein	
39	 46.46       35619..36014    	 +	131	37675699	-	VVA0039	-	uncharacterized conserved protein	
40	 50.41       36093..37568    	 -	491	37675700	-	VVA0040	-	Na+/H+ antiporter NhaD	
41	 47.90       37949..38998    	 -	349	37675701	-	VVA0041	-	uncharacterized protein conserved in bacteria	
42	 47.81       39187..39780    	 +	197	37675702	-	VVA0042	-	putative transcription regulator	
43	 51.53 +1    39857..40708    	 +	283	37675703	-	VVA0043	-	conserved hypothetical protein	
44	 52.42 +1    40806..42665    	 -	619	37675704	-	VVA0044	-	chitinase	
45	 47.94       42578..43426    	 -	282	37675705	-	VVA0045	-	chitinase	
46	 45.45       43674..44399    	 -	241	37675706	-	VVA0046	-	conserved hypothetical protein	
47	 46.81       44399..44680    	 +	93	37675707	-	VVA0047	-	uncharacterized protein conserved in bacteria	
48	 47.70       44776..45687    	 -	303	37675708	-	VVA0048	-	pirin-related protein	
49	 51.09       45801..46076    	 +	91	37675709	-	VVA0049	-	conserved hypothetical protein	
50	 45.03       46095..47291    	 -	398	37675710	-	VVA0050	-	GGDEF family protein	
51	 47.82       47745..49553    	 -	602	37675711	-	VVA0051	-	conserved hypothetical protein	
52	 49.08       49708..51720    	 -	670	37675712	-	VVA0052	-	type II secretory pathway, pullulanase	
53	 46.75       52115..53389    	 +	424	37675713	-	VVA0053	-	maltoporin	
54	 49.42       53453..54316    	 +	287	37675714	-	VVA0054	-	conserved hypothetical protein	
55	 50.88       54432..57212    	 -	926	37675715	-	VVA0055	-	glycogen debranching enzyme	
56	 48.52       57274..58452    	 -	392	37675716	-	VVA0056	-	maltose-binding periplasmic protein	
57	 50.69       58679..60499    	 -	606	37675717	-	VVA0057	-	glycosidase	
58	 49.83       60693..61874    	 +	393	37675718	-	VVA0058	-	conserved hypothetical protein	
59	 51.93 +1    61938..65546    	 -	1202	37675719	-	VVA0059	-	type II secretory pathway, pullulanase	
60	 32.26 -2    66014..66199    	 +	61	37675720	-	VVA0060	-	hypothetical protein	
61	 40.98 -1    66326..66835    	 +	169	37675721	-	VVA0061	-	hypothetical protein	
62	 25.19 -2    66838..66972    	 +	44	37675722	-	VVA0062	-	hypothetical protein	
63	 48.01       67248..69428    	 +	726	37675723	-	VVA0063	-	ornithine decarboxylase, inducible	
64	 50.65       69494..70804    	 +	436	37675724	-	VVA0064	-	amino acid transporter	
65	 50.86       71169..72041    	 +	290	37675725	-	VVA0065	-	putative pyridoxine kinase	
66	 50.20       72095..73315    	 -	406	37675726	-	VVA0066	-	sodium/dicarboxylate symporter	
67	 48.02       73598..74659    	 -	353	37675727	-	VVA0067	-	predicted GTPase	
68	 51.78 +1    74965..75414    	 -	149	37675728	-	VVA0068	-	uncharacterized protein conserved in bacteria	
69	 49.55       75416..76075    	 -	219	37675729	-	VVA0069	-	Sco1-related protein	
70	 50.68       76012..76455    	 -	147	37675730	-	VVA0070	-	conserved hypothetical protein	
71	 45.28       76455..76613    	 -	52	37675731	-	VVA0071	-	hypothetical protein	
72	 47.25       76591..77610    	 -	339	37675732	-	VVA0072	-	predicted membrane protein	
73	 40.97 -1    77864..78007    	 -	47	37675733	-	VVA0073	-	hypothetical protein	
74	 46.71       78037..79038    	 -	333	37675734	-	VVA0074	-	hypothetical protein	
75	 50.54       79358..82066    	 -	902	37675735	-	VVA0076	-	ATP-dependent transcriptional regulator	
76	 37.21 -2    82044..82172    	 +	42	37675736	-	VVA0075	-	hypothetical protein	
77	 48.79       82553..85075    	 +	840	37675737	-	VVA0077	-	glucan phosphorylase	
78	 51.54 +1    85188..87368    	 +	726	37675738	-	VVA0078	-	4-alpha-glucanotransferase	
79	 50.92       87555..89783    	 +	742	37675739	-	VVA0079	-	1;4-alpha-glucan branching enzyme	
80	 48.80       89853..91856    	 +	667	37675740	-	VVA0080	-	methyl-accepting chemotaxis protein	
81	 51.06       92110..93519    	 +	469	37675741	-	VVA0081	-	2-methylthioadenine synthetase	
82	 50.34       93596..94183    	 -	195	37675742	-	VVA0082	-	putative threonine efflux protein	
83	 48.88       94258..94746    	 +	162	37675743	-	VVA0083	-	transcriptional regulator	
84	 50.67       94743..95930    	 -	395	37675744	-	VVA0084	-	hypothetical protein	
85	 51.17 +1    96015..96653    	 -	212	37675745	-	VVA0085	-	putative pyrrolidone-carboxylate peptidase	
86	 51.16 +1    97037..98242    	 +	401	37675746	-	VVA0086	-	uncharacterized protein conserved in bacteria	
87	 45.09       98351..99073    	 -	240	37675747	-	VVA0088	-	hypothetical protein	
88	 44.44       98384..98563    	 +	59	37675748	-	VVA0087	-	hypothetical protein	
89	 45.09       99376..102156   	 +	926	37675749	-	VVA0089	-	hypothetical protein	
90	 51.47 +1   102278..102955   	 -	225	37675750	-	VVA0090	-	phosphoserine phosphatase	
91	 49.41      103095..104717   	 +	540	37675751	-	VVA0091	-	methyl-accepting chemotaxis protein	
92	 47.11      104836..105423   	 -	195	37675752	-	VVA0092	-	conserved hypothetical protein	
93	 52.38 +1   105673..107100   	 +	475	37675753	-	VVA0093	-	NAD-dependent aldehyde dehydrogenase	
94	 50.70      107254..108111   	 +	285	37675754	-	VVA0094	-	glutathione S-transferase	
95	 40.21 -1   108108..108296   	 -	62	37675755	-	VVA0095	-	hypothetical protein	
96	 48.87      108265..109590   	 -	441	37675756	-	VVA0096	-	conserved hypothetical protein	
97	 49.92      109734..111602   	 -	622	37675757	-	VVA0097	-	conserved hypothetical protein	
98	 48.94      111732..114479   	 +	915	37675758	-	VVA0098	-	predicted Zn-dependent peptidase	
99	 46.17      114523..115605   	 -	360	37675759	-	VVA0099	-	transcriptional regulator	
100	 49.63      115784..116875   	 -	363	37675760	-	VVA0100	-	putative outer membrane porin	

 
 47.09 MEAN 
 
 4.03  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.