IslandPath Analysis: Mycobacterium bovis subsp. bovis AF2122/97



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium bovis AF2122/97, complete genome - 0..4345492
3920 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 58.92        1..1524     	 +	507	31791178	dnaA	Mb0001	-	CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA	
2	 60.13 -1     2052..3260     	 +	402	31791179	dnaN	Mb0002	-	DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)	
3	 60.10 -1     3280..4437     	 +	385	31791180	recF	Mb0003	-	DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN)	
4	 65.96        4434..4997     	 +	187	31791181	-	Mb0004	-	CONSERVED HYPOTHETICAL PROTEIN	
5	 60.14 -1     5123..7267     	 +	714	31791182	gyrB	Mb0005	-	DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)	
6	 63.85        7302..9818     	 +	838	31791183	gyrA	Mb0006	-	DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)	
7	 68.31        9914..10828    	 +	304	31791184	-	Mb0007	-	POSSIBLE CONSERVED MEMBRANE PROTEIN	
8	 71.00 +1    11874..12311    	 -	145	31791185	-	Mb0008c	-	POSSIBLE MEMBRANE PROTEIN	
9	 62.48       12468..13016    	 +	182	31791186	ppiA	Mb0009	-	PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A)	
10	 61.90 -1    13222..13557    	 -	111	31791187	-	Mb0010c	-	PROBABLE CONSERVED MEMBRANE PROTEIN	
11	 56.38 -2    13713..13994    	 -	93	31791188	-	Mb0011c	-	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	
12	 65.02       14088..14876    	 +	262	31791189	-	Mb0012	-	PROBABLE CONSERVED MEMBRANE PROTEIN	
13	 63.95       14913..15611    	 +	232	31791190	trpG	Mb0013	-	POSSIBLE ANTHRANILATE SYNTHASE COMPONENT II TRPG (GLUTAMINE AMIDOTRANSFERASE)	
14	 63.26       15589..17469    	 -	626	31791191	pknB	Mb0014c	-	TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B)	
15	 67.75       17466..18761    	 -	431	31791192	pknA	Mb0015c	-	TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A)	
16	 64.50       18758..20233    	 -	491	31791193	pbpA	Mb0016c	-	PROBABLE PENICILLIN-BINDING PROTEIN PBPA	
17	 62.13       20230..21639    	 -	469	31791194	rodA	Mb0017c	-	PROBABLE CELL DIVISION PROTEIN RODA	
18	 67.57       21636..23180    	 -	514	31791195	ppp	Mb0018c	-	POSSIBLE SERINE/THREONINE PHOSPHATASE PPP	
19	 62.82       23269..23736    	 -	155	31791196	-	Mb0019c	-	CONSERVED HYPOTHETICAL PROTEIN	
20	 66.48       23860..25425    	 -	521	31791197	TB39.8	Mb0020c	-	CONSERVED HYPOTHETICAL PROTEIN TB39.8	
21	 66.05       25894..26862    	 -	322	31791198	-	Mb0021c	-	CONSERVED HYPOTHETICAL PROTEIN	
22	 68.33       27004..27423    	 -	139	31791199	whiB5	Mb0022c	-	PUTATIVE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5	
23	 67.32       27576..28346    	 +	256	31791200	-	Mb0023	-	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	
24	 69.30 +1    28343..29176    	 +	277	31791201	-	Mb0024	-	PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN [FIRST PART]	
25	 65.01       29225..29587    	 +	120	31791202	-	Mb0026	-	CONSERVED HYPOTHETICAL PROTEIN	
26	 65.48       29702..31135    	 +	477	31791203	-	Mb0027	-	CONSERVED HYPOTHETICAL PROTEIN	
27	 62.89       31173..31490    	 +	105	31791204	-	Mb0028	-	HYPOTHETICAL PROTEIN	
28	 63.73       31498..31803    	 +	101	31791205	-	Mb0029	-	HYPOTHETICAL PROTEIN	
29	 66.03       32041..33138    	 +	365	31791206	-	Mb0030	-	CONSERVED HYPOTHETICAL PROTEIN	
30	 65.45       33208..33537    	 +	109	31791207	-	Mb0031	-	HYPOTHETICAL PROTEIN	
31	 66.67       33566..33778    	 +	70	31791208	-	Mb0032	-	PUTATIVE REMNANT OF A TRANSPOSASE	
32	 62.13       34279..36594    	 +	771	31791209	bioF2	Mb0033	-	POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE)	
33	 57.20 -2    36591..36854    	 +	87	31791210	acpA	Mb0034	-	PROBABLE ACYL CARRIER PROTEIN ACPA (ACP)	
34	 65.66       36851..37246    	 +	131	31791211	-	Mb0035	-	CONSERVED HYPOTHETICAL PROTEIN	
35	 63.59       37243..38931    	 +	562	31791212	fadD34	Mb0036	-	PROBABLE FATTY-ACID-COA LIGASE FADD34 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-COA SYNTHASE)	
36	 68.86       39040..39813    	 -	257	31791213	-	Mb0037c	-	CONSERVED HYPOTHETICAL PROTEIN	
37	 67.72       39861..41186    	 -	441	31791214	-	Mb0038c	-	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN	
38	 65.19       41288..41896    	 +	202	31791215	-	Mb0039	-	CONSERVED HYPOTHETICAL PROTEIN	
39	 71.55 +1    41988..42335    	 -	115	31791216	-	Mb0040c	-	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN	
40	 67.52       42417..43349    	 -	310	31791217	mtc28	Mb0041c	-	SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN)	
41	 62.96       43546..46455    	 +	969	31791218	leuS	Mb0042	-	PROBABLE LEUCYL-tRNA SYNTHETASE LEUS (LEUCINE--tRNA LIGASE) (LEURS)	
42	 63.80       46565..47191    	 -	208	31791219	-	Mb0043c	-	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY)	
43	 63.67       47350..48084    	 -	244	31791220	-	Mb0044c	-	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY)	
44	 66.54       48217..49011    	 -	264	31791221	-	Mb0045c	-	POSSIBLE OXIDOREDUCTASE	
45	 67.11       49027..49923    	 -	298	31791222	-	Mb0046c	-	POSSIBLE HYDROLASE	
46	 64.04       50005..51108    	 -	367	31791223	ino1	Mb0047c	-	MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase)	
47	 66.48       51169..51711    	 -	180	31791224	-	Mb0048c	-	CONSERVED HYPOTHETICAL PROTEIN	
48	 65.86       51812..52681    	 -	289	31791225	-	Mb0049c	-	POSSIBLE MEMBRANE PROTEIN	
49	 66.67       52815..53228    	 +	137	31791226	-	Mb0050	-	CONSERVED HYPOTHETICAL PROTEIN	
50	 63.34       53647..55689    	 +	680	31791227	ponA1	Mb0051	-	PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE)	
51	 64.53       55686..57368    	 +	560	31791228	-	Mb0052	-	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	
52	 65.96       57400..57963    	 +	187	31791229	-	Mb0053	-	CONSERVED HYPOTHETICAL PROTEIN	
53	 60.14 -1    58182..58472    	 +	96	31791230	rpsF	Mb0054	-	PROBABLE 30S RIBOSOMAL PROTEIN S6 RPSF	
54	 66.67       58576..59070    	 +	164	31791231	ssb	Mb0055	-	PROBABLE SINGLE-STRAND BINDING PROTEIN SSB (HELIX-DESTABILIZING PROTEIN)	
55	 64.71       59112..59366    	 +	84	31791232	rpsR1	Mb0056	-	PROBABLE 30S RIBOSOMAL PROTEIN S18-1 RPSR1	
56	 62.09       59399..59857    	 +	152	31791233	rplI	Mb0057	-	PROBABLE 50S RIBOSOMAL PROTEIN L9 RPLI	
57	 60.73 -1    59886..60407    	 +	173	31791234	-	Mb0058	-	HYPOTHETICAL PROTEIN	
58	 62.90       60386..63010    	 +	874	31791235	dnaB	Mb0059	-	PROBABLE REPLICATIVE DNA HELICASE DNAB	
59	 61.90 -1    63190..63882    	 +	230	31791236	-	Mb0060	-	HYPOTHETICAL PROTEIN	
60	 60.06 -1    63899..64957    	 +	352	31791237	-	Mb0061	-	CONSERVED HYPOTHETICAL PROTEIN	
61	 61.74 -1    64981..65406    	 +	141	31791238	-	Mb0062	-	HYPOTHETICAL PROTEIN	
62	 68.15       65542..66684    	 +	380	31791239	celA1	Mb0063	-	POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE)	
63	 67.22       66913..68352    	 +	479	31791240	-	Mb0064	-	POSSIBLE OXIDOREDUCTASE	
64	 63.64       68610..71549    	 +	979	31791241	-	Mb0065	-	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	
65	 62.44       71848..72249    	 +	133	31791242	-	Mb0066	-	CONSERVED HYPOTHETICAL PROTEIN	
66	 61.75 -1    72301..74538    	 -	745	31791243	icd2	Mb0067c	-	PROBABLE ISOCITRATE DEHYDROGENASE [NADP] ICD2 (OXALOSUCCINATE DECARBOXYLASE) (IDH) (NADP+-SPECIFIC ICDH) (IDP)	
67	 65.09       74656..75225    	 -	189	31791244	-	Mb0068c	-	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY)	
68	 65.79       75328..76239    	 +	303	31791245	-	Mb0069	-	PROBABLE OXIDOREDUCTASE	
69	 65.08       76264..77649    	 -	461	31791246	sdaA	Mb0070c	-	PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD)	
70	 66.20       77646..78923    	 -	425	31791247	glyA2	Mb0071c	-	PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2)	
71	 64.71       79513..80229    	 +	238	31791248	-	Mb0072	-	POSSIBLE MATURASE	
72	 61.71 -1    80660..81709    	 +	349	31791249	-	Mb0073	-	PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER	
73	 61.68 -1    81712..82554    	 +	280	31791250	-	Mb0074	-	PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ	
74	 66.02       82783..84018    	 +	411	31791251	-	Mb0076	-	CONSERVED HYPOTHETICAL PROTEIN	
75	 64.11       84031..85203    	 +	390	31791252	-	Mb0077	-	PROBABLE AMINOTRANSFERASE	
76	 62.31       85218..85607    	 -	129	31791253	-	Mb0078c	-	PROBABLE MEMBRANE PROTEIN	
77	 66.19       85671..86501    	 -	276	31791254	-	Mb0079c	-	PROBABLE OXIDOREDUCTASE	
78	 68.15       86563..87168    	 +	201	31791255	-	Mb0080	-	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN	
79	 61.11 -1    87243..87836    	 -	197	31791256	-	Mb0081c	-	HYPOTHETICAL PROTEIN	
80	 68.13       88239..89060    	 +	273	31791257	-	Mb0082	-	HYPOTHETICAL PROTEIN	
81	 68.63       89057..89515    	 +	152	31791258	-	Mb0083	-	CONSERVED HYPOTHETICAL PROTEIN	
82	 65.51       89610..89954    	 +	114	31791259	-	Mb0084	-	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN	
83	 69.79 +1    89959..90438    	 +	159	31791260	-	Mb0085	-	PROBABLE OXIDOREDUCTASE	
84	 71.12 +1    90435..92363    	 +	642	31791261	-	Mb0086	-	PROBABLE OXIDOREDUCTASE	
85	 68.56       92363..93313    	 +	316	31791262	hycD	Mb0087	-	POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL)	
86	 68.93 +1    93324..93986    	 +	220	31791263	hycP	Mb0088	-	POSSIBLE HYDROGENASE HYCP	
87	 68.98 +1    93986..95452    	 +	488	31791264	hycQ	Mb0089	-	POSSIBLE HYDROGENASE HYCQ	
88	 66.73       95449..96927    	 +	492	31791265	hycE	Mb0090	-	POSSIBLE FORMATE HYDROGENASE HYCQ (FHL)	
89	 61.78 -1    96962..97636    	 +	224	31791266	-	Mb0091	-	HYPOTHETICAL PROTEIN	
90	 67.00       97793..98386    	 +	197	31791267	-	Mb0092	-	POSSIBLE METHYLTRANSFERASE/METHYLASE	
91	 65.63       98515..99285    	 +	256	31791268	-	Mb0093	-	POSSIBLE MEMBRANE PROTEIN	
92	 65.10       99719..100486   	 +	255	31791269	mtn	Mb0094	-	PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE	
93	 67.59      100618..102903   	 +	761	31791270	ctpA	Mb0095	-	PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA	
94	 67.73      102850..103698   	 -	282	31791271	-	Mb0096c	-	PROBABLE CONSERVED MEMBRANE PROTEIN	
95	 67.30      103745..104698   	 -	317	31791272	-	Mb0097c	-	CONSERVED HYPOTHETICAL PROTEIN	
96	 63.86      104469..105251   	 -	260	31791273	-	Mb0098c	-	CONSERVED HYPOTHETICAL PROTEIN	
97	 64.94      105360..106751   	 +	463	31791274	PPE1	Mb0099	-	PPE FAMILY PROTEIN	
98	 58.85 -1   106770..107639   	 +	289	31791275	-	Mb0100	-	POSSIBLE OXIDOREDUCTASE	
99	 59.06 -1   107636..108187   	 +	183	31791276	-	Mb0101	-	CONSERVED HYPOTHETICAL PROTEIN	
100	 62.66      108192..109814   	 +	540	31791277	fadD10	Mb0102	-	POSSIBLE FATTY-ACID-COA LIGASE FADD10 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-COA SYNTHASE)	

 
 65.47 MEAN 
 
 3.40  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.