IslandPath Analysis: Bordetella parapertussis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.05   STD DEV: 4.09
Bordetella parapertussis 12822, complete genome - 0..4773551
4185 proteins

Pos	 %G+C  SD      Location		Strand	Length	PID	Gene	Synonym	Code	Product

1	 62.50        1..1920     	 +	639	33594724	gidA	BPP0001	-	glucose inhibited division protein A	
2	 66.52        1917..2609     	 +	230	33594725	gidB	BPP0002	-	glucose inhibited division protein B	
3	 62.16 -1     2606..3403     	 +	265	33594726	parA	BPP0003	-	ParA family protein	
4	 68.03        3410..4216     	 +	268	33594727	-	BPP0004	-	Putative acetyltransferase, GnaT family	
5	 68.08        4260..5177     	 +	305	33594728	parB	BPP0005	-	probable chromosome partitioning protein ParB	
6	 71.36        5170..6171     	 +	333	33594729	ansB	BPP0006	-	L-asparaginase II precursor	
7	 62.55 -1     6767..7957     	 +	396	33594730	tufA	BPP0007	-	elongation factor Tu	
8	 58.79 -2     8196..8576     	 +	126	33594731	secE	BPP0008	-	preprotein translocase SecE subunit	
9	 54.49 -2     8586..9119     	 +	177	33594732	nusG	BPP0009	-	transcription antitermination protein NusG	
10	 63.43 -1     9183..9614     	 +	143	33594733	rplK	BPP0010	-	50S ribosomal protein L11	
11	 64.38        9617..10315    	 +	232	33594734	rplA	BPP0011	-	50S ribosomal protein L1	
12	 61.33 -1    10558..11082    	 +	174	33594735	rplJ	BPP0012	-	50S ribosomal protein L10	
13	 62.50 -1    11164..11547    	 +	127	33594736	rplL	BPP0013	-	50S ribosomal protein L7/L12	
14	 63.23 -1    11683..15819    	 +	1378	33594737	rpoB	BPP0014	-	DNA-directed RNA polymerase beta chain	
15	 64.12       15819..20063    	 +	1414	33594738	rpoC	BPP0015	-	DNA-directed RNA polymerase beta' chain	
16	 65.43       20172..20576    	 -	134	33594739	-	BPP0016	-	putative lipoprotein	
17	 71.56       20817..22043    	 +	408	33594740	-	BPP0017	-	putative membrane protein	
18	 68.38       24353..25459    	 -	368	33594741	-	BPP0019	-	putative peptidoglycan binding protein	
19	 62.86 -1    25477..26211    	 -	244	33594742	-	BPP0020	-	probable two-component response regulator	
20	 68.63       26469..27281    	 +	270	33594743	-	BPP0021	-	Two-component response regulator	
21	 66.35       27311..28246    	 -	311	33594744	-	BPP0022	-	putative metal transporter	
22	 63.77 -1    28252..28527    	 -	91	33594745	-	BPP0023	-	conserved hypothetical protein	
23	 61.11 -1    29104..29481    	 +	125	33594746	rpsL	BPP0024	-	30S ribosomal protein S12	
24	 59.87 -2    29645..30115    	 +	156	33594747	rpsG	BPP0025	-	30S ribosomal protein S7	
25	 62.58 -1    30133..32235    	 +	700	33594748	fusA	BPP0026	-	elongation factor G	
26	 62.55 -1    32312..33502    	 +	396	33594749	tuf	BPP0027	-	elongation factor Tu	
27	 59.62 -2    33566..33877    	 +	103	33594750	rpsJ	BPP0028	-	30S ribosomal protein S10	
28	 64.96       34217..34918    	 +	233	33594751	rplC	BPP0029	-	50S ribosomal protein L3	
29	 61.49 -1    34923..35540    	 +	205	33594752	rplD	BPP0030	-	50S ribosomal protein L4	
30	 56.90 -2    35537..35833    	 +	98	33594753	rplW	BPP0031	-	50S ribosomal protein L23	
31	 64.86       35834..36661    	 +	275	33594754	rplB	BPP0032	-	50S ribosomal protein L2	
32	 57.61 -2    36674..36949    	 +	91	33594755	rpsS	BPP0033	-	30S ribosomal protein S19	
33	 57.27 -2    36953..37282    	 +	109	33594756	rplV	BPP0034	-	50S ribosomal protein L22	
34	 63.51 -1    37292..38083    	 +	263	33594757	rpsC	BPP0035	-	30S ribosomal protein S3	
35	 63.31 -1    38086..38502    	 +	138	33594758	rplP	BPP0036	-	50S ribosomal protein L16	
36	 60.42 -1    38513..38704    	 +	63	33594759	rpmC	BPP0037	-	50S ribosomal protein L29	
37	 57.80 -2    38706..38987    	 +	93	33594760	rpsQ	BPP0038	-	30S ribosomal protein S17	
38	 66.32       40103..41530    	 -	475	33594761	-	BPP0040	-	putative aldehyde dehydrogenase	
39	 60.43 -1    42425..42793    	 +	122	33594762	rplN	BPP0041	-	50S ribosomal protein L14	
40	 62.93 -1    42804..43124    	 +	106	33594763	rplX	BPP0042	-	50S ribosomal protein L24	
41	 57.96 -2    43137..43676    	 +	179	33594764	rplE	BPP0043	-	50S ribosomal protein L5	
42	 59.15 -2    43689..43994    	 +	101	33594765	rpsN	BPP0044	-	30S ribosomal protein S14	
43	 61.11 -1    44005..44400    	 +	131	33594766	rpsH	BPP0045	-	30S ribosomal protein S8	
44	 60.11 -1    44411..44944    	 +	177	33594767	rplF	BPP0046	-	50S ribosomal protein L6	
45	 64.19       44966..45328    	 +	120	33594768	rplR	BPP0047	-	50S ribosomal protein L18	
46	 61.90 -1    45344..45868    	 +	174	33594769	rpsE	BPP0048	-	30S ribosomal protein S5	
47	 62.37 -1    45872..46057    	 +	61	33594770	rpmD	BPP0049	-	50S ribosomal protein L30	
48	 66.21       46067..46507    	 +	146	33594771	rplO	BPP0050	-	50S ribosomal protein L15	
49	 60.41 -1    46522..47847    	 +	441	33594772	secY	BPP0051	-	preprotein translocase SecY subunit	
50	 55.25 -2    47857..48075    	 +	72	33594773	infA	BPP0052	-	translation initiation factor IF-1	
51	 53.51 -2    48110..48223    	 +	37	33594774	rpmJ	BPP0053	-	50S ribosomal protein l36	
52	 62.57 -1    48265..48630    	 +	121	33594775	rpsM	BPP0054	-	30S ribosomal protein S13	
53	 63.68 -1    48646..49047    	 +	133	33594776	rpsK	BPP0055	-	30S ribosomal protein S11	
54	 63.30 -1    49059..49682    	 +	207	33594777	rpsD	BPP0056	-	30S ribosomal protein S4	
55	 63.73 -1    49897..50883    	 +	328	33594778	rpoA	BPP0057	-	DNA-directed RNA polymerase alpha chain	
56	 62.12 -1    51042..51437    	 +	131	33594779	-	BPP0058	-	50S ribosomal protein L17	
57	 63.01 -1    51566..52003    	 -	145	33594780	-	BPP0059	-	histidine triad protein	
58	 61.70 -1    52110..52451    	 +	113	33594781	cutA	BPP0060	-	putative periplasmic divalent cation tolerance protein	
59	 70.43       52462..54399    	 +	645	33594782	-	BPP0061	-	thiol:disulfide interchange protein	
60	 69.46       54440..55477    	 +	345	33594783	-	BPP0062	-	putative membrane protein	
61	 66.67       55474..56490    	 -	338	33594784	hemB	BPP0063	-	putative delta-aminolevulinic acid dehydratase	
62	 64.74       56487..57110    	 -	207	33594785	-	BPP0064	-	putative GTP-binding protein	
63	 66.38       57334..58035    	 +	233	33594786	-	BPP0065	-	putative cytochrome C precursor	
64	 66.57       58153..60249    	 +	698	33594787	-	BPP0066	-	putative membrane protein	
65	 66.89       60259..61593    	 +	444	33594788	-	BPP0067	-	putative cytochrome c asssembly protein	
66	 68.91       61664..62953    	 -	429	33594789	lysA	BPP0068	-	diaminopimelate decarboxylase	
67	 63.94 -1    63167..63496    	 +	109	33594790	cyaY	BPP0069	-	conserved hypothetical protein	
68	 66.50       63553..65997    	 -	814	33594791	-	BPP0070	-	penicillin-binding protein 1A	
69	 66.35       66111..66746    	 +	211	33594792	aroK	BPP0071	-	shikimate kinase I	
70	 69.82       66746..67822    	 +	358	33594793	aroB	BPP0072	-	3-dehydroquinate synthase	
71	 66.93       67819..68973    	 +	384	33594794	-	BPP0073	-	putative phosphohydrolase	
72	 67.75       69864..72722    	 -	952	33594795	uvrA	BPP0075	-	excinuclease ABC subunit A	
73	 72.74 +1    72878..74062    	 +	394	33594796	-	BPP0076	-	putative transport protein	
74	 67.69       74295..74783    	 +	162	33594797	ssb	BPP0077	-	single-strand binding protein	
75	 61.34 -1    74842..76062    	 -	406	33594798	-	BPP0078	-	transposase	
76	 64.87       76330..78444    	 +	704	33594799	bfrC	BPP0079	-	ferric siderophore receptor	
77	 69.25       78581..79084    	 +	167	33594800	-	BPP0080	-	conserved hypothetical protein	
78	 66.15       79103..79882    	 +	259	33594801	-	BPP0081	-	putative aldolase	
79	 70.11       79911..80927    	 +	338	33594802	-	BPP0082	-	putative exported protein	
80	 65.91       80981..81775    	 +	264	33594803	-	BPP0083	-	GntR family regulatory proteins	
81	 69.43       81772..82713    	 -	313	33594804	-	BPP0084	-	transcriptional regulator	
82	 67.67       82993..84483    	 +	496	33594805	-	BPP0085	-	putative chlorohydrolase	
83	 68.24       84522..85412    	 +	296	33594806	-	BPP0086	-	putative exported protein	
84	 68.67       85565..86710    	 +	381	33594807	-	BPP0087	-	putative glycosyl transferases	
85	 68.50       86717..87535    	 +	272	33594808	-	BPP0088	-	hypothetical protein	
86	 67.59       87695..88666    	 +	323	33594809	-	BPP0089	-	LysR family regulatory protein	
87	 68.66       88692..89693    	 +	333	33594810	-	BPP0090	-	periplasmic solute-binding protein	
88	 63.29 -1    89757..90527    	 +	256	33594811	-	BPP0091	-	ABC transport system permease protein	
89	 63.38 -1    90515..91306    	 +	263	33594812	-	BPP0092	-	ABC transporter ATP-binding protein	
90	 68.11       91334..92650    	 +	438	33594813	-	BPP0093	-	conserved hypothetical protein	
91	 63.49 -1    92787..92975    	 -	62	33594814	-	BPP0094	-	putative exported protein	
92	 67.60       92984..93628    	 -	214	33594815	-	BPP0095	-	TetR-family transcriptional regulator	
93	 69.01       93664..95841    	 -	725	33594816	glcB	BPP0096	-	malate synthase G	
94	 67.32       96085..96849    	 +	254	33594817	glcC	BPP0097	-	GntR-family transcriptional regulator	
95	 68.44       96846..97973    	 -	375	33594818	-	BPP0098	-	putative dehydrogenase	
96	 68.48       98199..98585    	 -	128	33594819	-	BPP0099	-	Putative exported protein	
97	 67.96       98851..99777    	 -	308	33594820	-	BPP0100	-	UbiA prenyltransferase family protein	
98	 66.67       99864..101063   	 -	399	33594821	-	BPP0101	-	putative aminotransferase	
99	 67.88      101202..101696   	 +	164	33594822	-	BPP0102	-	conserved hypothetical protein	
100	 71.44      101984..102883   	 +	299	33594823	-	BPP0103	-	putative dihydrodipicolinate synthase	

 
 68.05 MEAN 
 
 4.09  STD DEV 




Last Updated: Sept 17 2004 (Note: update adds new organisms but does not affect the existing records)
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.