Dinoroseobacter shibae DFL 12 plasmid pDSHI05, complete sequence NC_009959 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 159046700 Common - Acetamidase/Formamidase Dshi_4177 41 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 159046678 Common - hypothetical protein Dshi_4155 12 COG5501 COG5501, Predicted secreted protein Function unknown 159046714 Common - TRAP dicarboxylate transporter, DctP subunit Dshi_4191 100 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 159046728 Common - TRAP dicarboxylate transporter, DctM subunit Dshi_4205 125 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 159046696 Common - hypothetical protein Dshi_4173 59 COG3458 COG3458, Acetyl esterase (deacetylase) Secondary metabolites biosynthesis, transport, and catabolism 159046693 Common - periplasmic glucan biosynthesis protein Dshi_4170 53 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 159046687 Common - ABC transporter related Dshi_4164 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 159046702 Nonpathogen - protein of unknown function DUF1469 Dshi_4179 1 None None None 159046698 Common - protein of unknown function UPF0118 Dshi_4175 131 COG0628 PerM, Predicted permease General function prediction only 159046721 Common - transcriptional regulator, LysR family Dshi_4198 191 COG0583 LysR, Transcriptional regulator Transcription 159046738 Nonpathogen - hypothetical protein Dshi_4215 8 None None None 159046716 Common - TRAP dicarboxylate transporter, DctM subunit Dshi_4193 125 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 159046724 Common - (2Fe-2S)-binding domain protein Dshi_4201 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 159046741 Common - hypothetical protein Dshi_4218 74 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 159046691 Nonpathogen - CDP-alcohol phosphatidyltransferase Dshi_4168 8 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 159046710 Common - binding-protein-dependent transport systems inner membrane component Dshi_4187 147 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 159046735 Common - ParB domain protein nuclease Dshi_4212 9 None None None 159046742 Nonpathogen - hypothetical protein Dshi_4219 1 None None None 159046749 Common - hypothetical protein Dshi_4226 14 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 159046684 Common - MltA-interacting MipA family protein Dshi_4161 21 COG3713 OmpV, Outer membrane protein V Cell envelope biogenesis, outer membrane 159046725 Common - Carbon-monoxide dehydrogenase (acceptor) Dshi_4202 108 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 159046704 Common - hypothetical protein Dshi_4181 8 None None None 159046743 Common - protein of unknown function DUF112 transmembrane Dshi_4220 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 159046712 Common - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein Dshi_4189 31 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159046733 Common - PilT protein domain protein Dshi_4210 49 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 159046732 Common - glycerophosphoryl diester phosphodiesterase Dshi_4209 169 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 159046717 Common - Gamma-glutamyltransferase Dshi_4194 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 159046706 Nonpathogen - hypothetical protein Dshi_4183 1 None None None 159046683 Common - light-dependent protochlorophyllide reductase Dshi_4160 110 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 159046713 Common - hypothetical protein Dshi_4190 6 COG3391 COG3391, Uncharacterized conserved protein Function unknown 159046745 Nonpathogen - hypothetical protein Dshi_4222 1 None None None 159046685 Common - glycosyl transferase group 1 Dshi_4162 25 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 159046688 Common - NMT1/THI5 like domain protein Dshi_4165 88 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 159046729 Common - aminotransferase class IV Dshi_4206 178 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 159046694 Common - periplasmic glucan biosynthesis protein MdoG Dshi_4171 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 159046719 Nonpathogen - hypothetical protein Dshi_4196 1 None None None 159046677 Common - beta-lactamase domain protein Dshi_4154 69 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 159046746 Common - Ferritin Dps family protein Dshi_4223 122 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 159046730 Common - protein of unknown function DUF900 hydrolase family protein Dshi_4207 9 COG4782 COG4782, Uncharacterized protein conserved in bacteria Function unknown 159046715 Nonpathogen - Tripartite ATP-independent periplasmic transporter DctQ component Dshi_4192 5 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 159046695 Common - transcriptional regulator, AraC family Dshi_4172 145 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 159046720 Common - hypothetical protein Dshi_4197 75 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 159046739 Common - ABC-1 domain protein Dshi_4216 184 COG0661 AarF, Predicted unusual protein kinase General function prediction only 159046680 Common - monooxygenase protein, putative Dshi_4157 69 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 159046723 Common - Carbon-monoxide dehydrogenase (acceptor) Dshi_4200 94 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 159046692 Common - cytochrome B561 Dshi_4169 75 COG3038 CybB, Cytochrome B561 Energy production and conversion 159046689 Nonpathogen - hypothetical protein Dshi_4166 7 COG0392 COG0392, Predicted integral membrane protein Function unknown 159046701 Nonpathogen - hypothetical protein Dshi_4178 2 None None None 159046747 Nonpathogen - hypothetical protein Dshi_4224 3 None None None 159046697 Nonpathogen - hypothetical protein Dshi_4174 6 None None None 159046736 Common - Cobyrinic acid ac-diamide synthase Dshi_4213 203 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 159046708 Common - GntR domain protein Dshi_4185 96 COG2186 FadR, Transcriptional regulators Transcription 159046722 Common - transcriptional regulator, TetR family Dshi_4199 22 COG1309 AcrR, Transcriptional regulator Transcription 159046740 Common - transcriptional regulator, LacI family Dshi_4217 123 COG1609 PurR, Transcriptional regulators Transcription 159046737 Common - initiator RepB protein Dshi_4214 17 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 159046707 Common - CsbD family protein Dshi_4184 57 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 159046690 Nonpathogen - sulfatase Dshi_4167 10 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 159046682 Common - Alcohol dehydrogenase GroES domain protein Dshi_4159 210 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 159046748 Nonpathogen - hypothetical protein Dshi_4225 2 COG4256 HemP, Hemin uptake protein Inorganic ion transport and metabolism 159046718 Common - protein of unknown function DUF112 transmembrane Dshi_4195 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 159046699 Common - oxidoreductase FAD/NAD(P)-binding domain protein Dshi_4176 75 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 159046711 Common - binding-protein-dependent transport systems inner membrane component Dshi_4188 184 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 159046734 Common - hypothetical protein Dshi_4211 16 COG4691 StbC, Plasmid stability protein General function prediction only 159046703 Nonpathogen - hypothetical protein Dshi_4180 2 None None None 159046726 Common - TRAP dicarboxylate transporter- DctP subunit Dshi_4203 48 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 159046681 Common - acetoin reductase Dshi_4158 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 159046744 Common - 2-hydroxy-3-oxopropionate reductase Dshi_4221 159 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 159046679 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Dshi_4156 170 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 159046709 Common - ABC transporter related Dshi_4186 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 159046686 Common - binding-protein-dependent transport systems inner membrane component Dshi_4163 119 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 159046731 Nonpathogen - hypothetical protein Dshi_4208 5 None None None 159046727 Nonpathogen - hypothetical protein Dshi_4204 6 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 159046705 Common - MscS Mechanosensitive ion channel Dshi_4182 219 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane