Deinococcus geothermalis DSM 11300 plasmid pDGEO02, complete sequence NC_009939 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 158421554 Nonpathogen - hypothetical protein Dgeo_3042 1 None None None 158421539 Nonpathogen - hypothetical protein Dgeo_3027 1 None None None 158421623 Nonpathogen - hypothetical protein Dgeo_3113 1 None None None 158421579 Nonpathogen - hypothetical protein Dgeo_3067 1 None None None 158421472 Nonpathogen - hypothetical protein Dgeo_2958 1 None None None 158421564 Nonpathogen - hypothetical protein Dgeo_3052 1 None None None 158421615 Common - ABC transporter, permease component Dgeo_3105 142 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 158421572 Nonpathogen - Phage terminase large subunit (GpA) Dgeo_3060 1 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 158421466 Nonpathogen - hypothetical protein Dgeo_2952 1 None None None 158421609 Common - periplasmic binding protein/LacI transcriptional regulator Dgeo_3098 124 COG1609 PurR, Transcriptional regulators Transcription 158421456 Nonpathogen - XerD-like integrase Dgeo_2942 2 None None None 158421621 Common - Predicted metal-dependent hydrolase Dgeo_3111 109 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 158421547 Nonpathogen - Phage late control protein D Dgeo_3035 1 None None None 158421469 Nonpathogen - hypothetical protein Dgeo_2955 1 None None None 158421425 Common - transposase IS4 family protein Dgeo_2911 14 None None None 158421530 Common - helicase C-domain related protein Dgeo_3018 26 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 158421448 Nonpathogen - hypothetical protein Dgeo_2934 1 None None None 158421505 Nonpathogen - hypothetical protein Dgeo_2992 1 None None None 158421569 Nonpathogen - SegD-like phage related protein Dgeo_3057 2 None None None 158421518 Common - CCC1 related, iron/manganese transporter component, DUF125 Dgeo_3006 87 COG1814 COG1814, Uncharacterized membrane protein Function unknown 158421562 Nonpathogen - hypothetical protein Dgeo_3050 1 None None None 158421589 Nonpathogen - hypothetical protein Dgeo_3077 1 None None None 158421527 Nonpathogen - Phage portal protein Dgeo_3015 1 None None None 158421537 Nonpathogen - hypothetical protein Dgeo_3025 1 None None None 158421455 Common - Ribbon-helix-helix protein, copG family Dgeo_2941 19 COG4453 COG4453, Uncharacterized protein conserved in bacteria Function unknown 158421496 Common - Permease of the drug/metabolite transporter superfamily Dgeo_2982 35 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 158421566 Nonpathogen - hypothetical protein Dgeo_3054 1 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 158421617 Nonpathogen - hypothetical protein Dgeo_3107 2 COG5659 COG5659, FOG: Transposase DNA replication, recombination, and repair 158421600 Nonpathogen - transposase IS4 family protein Dgeo_3088 5 None None None 158421542 Nonpathogen - GPW/gp25 family protein Dgeo_3030 1 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 158421594 Nonpathogen - hypothetical protein Dgeo_3082 1 None None None 158421556 Nonpathogen - hypothetical protein Dgeo_3044 1 None None None 158421474 Common - AAA ATPase Dgeo_2960 32 COG3854 SpoIIIAA, ncharacterized protein conserved in bacteria Function unknown 158421586 Common - transposase Dgeo_3074 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421532 Nonpathogen - hypothetical protein Dgeo_3020 1 None None None 158421574 Nonpathogen - hypothetical protein Dgeo_3062 1 None None None 158421507 Nonpathogen - hypothetical protein Dgeo_2994 1 None None None 158421526 Nonpathogen - hypothetical protein Dgeo_3014 1 None None None 158421422 Nonpathogen - hypothetical protein Dgeo_2908 1 None None None 158421516 Nonpathogen - ApbE-like lipoprotein Dgeo_3004 25 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 158421460 Nonpathogen - hypothetical protein Dgeo_2946 1 None None None 158421453 Nonpathogen - hypothetical protein Dgeo_2939 1 None None None 158421483 Nonpathogen - single-strand binding protein Dgeo_2969 5 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 158421500 Nonpathogen - hypothetical protein Dgeo_2986 1 None None None 158421440 Nonpathogen - hypothetical protein Dgeo_2926 1 None None None 158421584 Nonpathogen - hypothetical protein Dgeo_3072 1 None None None 158421535 Nonpathogen - hypothetical protein Dgeo_3023 1 None None None 158421477 Nonpathogen - hypothetical protein Dgeo_2963 1 None None None 158421495 Common - PHD family antitoxin and ParA family chromosome partitioning ATPase Dgeo_2981 191 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 158421596 Nonpathogen - hypothetical protein Dgeo_3084 1 None None None 158421545 Nonpathogen - hypothetical protein Dgeo_3033 1 None None None 158421488 Nonpathogen - RES domain protein Dgeo_2974 1 None None None 158421434 Common - periplasmic binding protein/LacI transcriptional regulator Dgeo_2920 125 COG1609 PurR, Transcriptional regulators Transcription 158421428 Nonpathogen - hypothetical protein Dgeo_2914 1 None None None 158421459 Common - transposase Dgeo_2945 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421478 Common - single-strand binding protein Dgeo_2964 202 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 158421575 Common - DNA polymerase III, beta subunit Dgeo_3063 183 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 158421590 Nonpathogen - hypothetical protein Dgeo_3078 1 None None None 158421441 Nonpathogen - hypothetical protein Dgeo_2927 1 None None None 158421618 Common - N-6 DNA methylase Dgeo_3108 158 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 158421595 Nonpathogen - hypothetical protein Dgeo_3083 1 None None None 158421588 Nonpathogen - Phage related protein Dgeo_3076 1 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 158421602 Nonpathogen - Bifunctional DNA primase/polymerase Dgeo_3090 4 None None None 158421471 Nonpathogen - hypothetical protein Dgeo_2957 1 None None None 158421557 Nonpathogen - hypothetical protein Dgeo_3045 2 None None None 158421523 Nonpathogen - hypothetical protein Dgeo_3011 1 None None None 158421616 Common - ABC transporter, substrate binding periplasmic component Dgeo_3106 79 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 158421486 Nonpathogen - hypothetical protein Dgeo_2972 1 None None None 158421432 Common - ABC-type sugar transport system, permease component Dgeo_2918 149 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 158421570 Nonpathogen - Glycosyl hydrolase family 46 related protein Dgeo_3058 2 None None None 158421541 Nonpathogen - phage tail protein Dgeo_3029 3 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 158421502 Common - transposase IS4 family protein Dgeo_2989 5 None None None 158421493 Nonpathogen - hypothetical protein Dgeo_2979 1 None None None 158421462 Common - Type IV secretory pathway VirB4 component, ATPase TRAC Dgeo_2948 44 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 158421481 Common - UvrD/REP helicase Dgeo_2967 99 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 158421490 Nonpathogen - hypothetical protein Dgeo_2976 1 None None None 158421421 Nonpathogen - hypothetical protein Dgeo_2907 1 None None None 158421431 Common - ABC-type sugar transport system, permease component Dgeo_2917 148 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 158421509 Common - Zn-dependent peptidase Dgeo_2996 5 None None None 158421444 Nonpathogen - hypothetical protein Dgeo_2930 1 None None None 158421438 Common - Ribonuclease H Dgeo_2924 177 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 158421514 Nonpathogen - hypothetical protein Dgeo_3002 1 None None None 158421599 Nonpathogen - single-strand DNA binding protein (SSB) Dgeo_3087 2 None None None 158421457 Nonpathogen - hypothetical protein Dgeo_2943 1 None None None 158421559 Common - Predicted hydrolase of HD superfamily Dgeo_3047 32 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 158421533 Nonpathogen - ATPase, Zeta toxin Dgeo_3021 1 COG4088 COG4088, Predicted nucleotide kinase Nucleotide transport and metabolism 158421568 Nonpathogen - hypothetical protein Dgeo_3056 1 None None None 158421581 Nonpathogen - hypothetical protein Dgeo_3069 1 None None None 158421561 Nonpathogen - hypothetical protein Dgeo_3049 1 None None None 158421613 Common - secreted protein Dgeo_3103 33 COG1148 HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins Energy production and conversion 158421549 Nonpathogen - hypothetical protein Dgeo_3037 1 None None None 158421604 Nonpathogen - hypothetical protein Dgeo_3092 1 None None None 158421597 Nonpathogen - Phage Mu-F related protein Dgeo_3085 1 None None None 158421552 Nonpathogen - hypothetical protein Dgeo_3040 1 None None None 158421577 Nonpathogen - hypothetical protein Dgeo_3065 1 None None None 158421443 Nonpathogen - hypothetical protein Dgeo_2929 1 None None None 158421465 Common - ATPase involved in conjugal plasmid transfer TRAG Dgeo_2951 37 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 158421499 Nonpathogen - hypothetical protein Dgeo_2985 1 None None None 158421484 Common - acyltransferase 3 Dgeo_2970 2 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 158421529 Common - transposase Dgeo_3017 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421521 Nonpathogen - hypothetical protein Dgeo_3009 1 None None None 158421611 Nonpathogen - hypothetical protein Dgeo_3101 1 None None None 158421427 Common - transposase Dgeo_2913 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421436 Common - Threonine dehydratase Dgeo_2922 192 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 158421512 Common - Alkaline phosphatase Dgeo_3000 82 COG1785 PhoA, Alkaline phosphatase Inorganic ion transport and metabolism 158421592 Common - helicase related protein Dgeo_3080 94 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 158421504 Common - transposase IS3/IS911 family protein Dgeo_2991 27 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421531 Common - hypothetical protein Dgeo_3019 2 None None None 158421468 Nonpathogen - hypothetical protein Dgeo_2954 1 None None None 158421435 Nonpathogen - hypothetical protein Dgeo_2921 1 None None None 158421517 Nonpathogen - Ferric reductase related transmembrane protein Dgeo_3005 8 None None None 158421482 Nonpathogen - hypothetical protein Dgeo_2968 1 None None None 158421550 Nonpathogen - hypothetical protein Dgeo_3038 1 None None None 158421506 Common - parB-like partition protein Dgeo_2993 103 COG1475 Spo0J, Predicted transcriptional regulators Transcription 158421450 Common - IS1 transposase Dgeo_2936 21 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 158421528 Nonpathogen - hypothetical protein Dgeo_3016 1 None None None 158421494 Common - ParB-like chromosome partitioning protein Dgeo_2980 179 COG1475 Spo0J, Predicted transcriptional regulators Transcription 158421510 Common - transposase Dgeo_2997 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421426 Common - transposase IS4 family protein Dgeo_2912 5 None None None 158421497 Nonpathogen - hypothetical protein Dgeo_2983 1 None None None 158421538 Common - PKD domain containing protein Dgeo_3026 46 COG3291 COG3291, FOG: PKD repeat General function prediction only 158421622 Common - transposase IS4 family protein Dgeo_3112 8 None None None 158421591 Nonpathogen - hypothetical protein Dgeo_3079 1 None None None 158421473 Common - Lytic transglycosylase catalytic Dgeo_2959 152 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 158421606 Nonpathogen - hypothetical protein Dgeo_3095 1 None None None 158421553 Nonpathogen - hypothetical protein Dgeo_3041 1 None None None 158421563 Nonpathogen - hypothetical protein Dgeo_3051 1 None None None 158421467 Common - hypothetical protein Dgeo_2953 2 None None None 158421573 Nonpathogen - hypothetical protein Dgeo_3061 1 None None None 158421620 Common - type I site-specific deoxyribonuclease, HsdR family Dgeo_3110 135 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 158421612 Nonpathogen - IS1 related protein Dgeo_3102 1 None None None 158421454 Common - GCN5-related N-acetyltransferase Dgeo_2940 44 COG3153 COG3153, Predicted acetyltransferase General function prediction only 158421515 Nonpathogen - hypothetical protein Dgeo_3003 1 None None None 158421525 Nonpathogen - hypothetical protein Dgeo_3013 1 None None None 158421423 Nonpathogen - hypothetical protein Dgeo_2909 1 None None None 158421519 Common - Histidine kinase and HAMP domain Dgeo_3007 191 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 158421501 Common - IS1 transposase Dgeo_2987 21 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 158421463 Nonpathogen - hypothetical protein Dgeo_2949 1 None None None 158421508 Nonpathogen - ATPase associated with various cellular activities AAA_5 Dgeo_2995 1 COG0714 COG0714, MoxR-like ATPases General function prediction only 158421603 Nonpathogen - General secretory system II protein E domain protein Dgeo_3091 2 None None None 158421424 Nonpathogen - transposase, IS4 Dgeo_2910 1 None None None 158421449 Nonpathogen - IS1 related protein Dgeo_2935 1 None None None 158421492 Nonpathogen - hypothetical protein Dgeo_2978 1 None None None 158421433 Common - ABC-type sugar transport system, periplasmic component Dgeo_2919 135 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 158421480 Nonpathogen - hypothetical protein Dgeo_2966 1 None None None 158421476 Nonpathogen - hypothetical protein Dgeo_2962 1 None None None 158421536 Nonpathogen - hypothetical protein Dgeo_3024 1 None None None 158421439 Nonpathogen - Divergent AAA-4 ATPase related protein Dgeo_2925 1 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 158421546 Nonpathogen - Icc family phosphohydrolase, phage protein Dgeo_3034 5 None None None 158421489 Nonpathogen - hypothetical protein Dgeo_2975 1 None None None 158421475 Nonpathogen - hypothetical protein Dgeo_2961 1 None None None 158421601 Nonpathogen - Plasmid replication initiator repA-related protein Dgeo_3089 2 COG5534 COG5534, Plasmid replication initiator protein DNA replication, recombination, and repair 158421565 Nonpathogen - major capsid protein Dgeo_3053 1 None None None 158421544 Nonpathogen - hypothetical protein Dgeo_3032 1 None None None 158421614 Common - ABC transporter, permease component Dgeo_3104 148 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 158421446 Common - transposase IS4 family protein Dgeo_2932 5 None None None 158421555 Common - transposase, IS605 OrfB family Dgeo_3043 64 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421593 Nonpathogen - hypothetical protein Dgeo_3081 1 None None None 158421583 Nonpathogen - hypothetical protein Dgeo_3071 1 None None None 158421608 Nonpathogen - hypothetical protein Dgeo_3097 1 None None None 158421461 Nonpathogen - hypothetical protein Dgeo_2947 1 None None None 158421543 Nonpathogen - hypothetical protein Dgeo_3031 1 None None None 158421487 Nonpathogen - hypothetical protein Dgeo_2973 1 None None None 158421498 Nonpathogen - hypothetical protein Dgeo_2984 1 None None None 158421447 Nonpathogen - hypothetical protein Dgeo_2933 1 None None None 158421437 Nonpathogen - hypothetical protein Dgeo_2923 1 COG3236 COG3236, Uncharacterized protein conserved in bacteria Function unknown 158421452 Common - Sir2-like deacetylase Dgeo_2938 9 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 158421491 Nonpathogen - hypothetical protein Dgeo_2977 1 None None None 158421503 Nonpathogen - IS1 related protein Dgeo_2990 1 None None None 158421429 Nonpathogen - hypothetical protein Dgeo_2915 1 None None None 158421458 Common - serine/threonine protein kinase and AAA ATPase domain Dgeo_2944 135 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 158421479 Nonpathogen - hypothetical protein Dgeo_2965 1 None None None 158421442 Nonpathogen - hypothetical protein Dgeo_2928 1 None None None 158421619 Common - restriction modification system DNA specificity domain Dgeo_3109 105 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 158421576 Nonpathogen - hypothetical protein Dgeo_3064 1 None None None 158421524 Common - transposase Dgeo_3012 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421598 Common - transposase Dgeo_3086 48 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421585 Nonpathogen - hypothetical protein Dgeo_3073 1 None None None 158421540 Nonpathogen - hypothetical protein Dgeo_3028 1 None None None 158421580 Nonpathogen - hypothetical protein Dgeo_3068 1 None None None 158421578 Nonpathogen - hypothetical protein Dgeo_3066 1 None None None 158421464 Nonpathogen - TrbL/VirB6 plasmid conjugal transfer protein Dgeo_2950 1 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 158421610 Common - IS1 transposase Dgeo_3100 21 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 158421485 Nonpathogen - hypothetical protein Dgeo_2971 1 None None None 158421520 Common - two component transcriptional regulator, winged helix family Dgeo_3008 208 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 158421607 Common - predicted transcriptional regulator, LuxR family Dgeo_3096 3 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 158421445 Common - superfamily I DNA or RNA helicase-like protein Dgeo_2931 49 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 158421511 Nonpathogen - hypothetical protein Dgeo_2999 1 None None None 158421420 Common - prevent-host-death family protein Dgeo_2906 8 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 158421534 Nonpathogen - hypothetical protein Dgeo_3022 1 None None None 158421451 Nonpathogen - hypothetical protein Dgeo_2937 1 None None None 158421571 Nonpathogen - hypothetical protein Dgeo_3059 1 None None None 158421419 Common - addiction module toxin, RelE/StbE family Dgeo_2905 3 COG2026 RelE, Cytotoxic translational repressor of toxin-antitoxin stability system Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning 158421513 Common - hypothetical protein Dgeo_3001 5 None None None 158421430 Common - Alpha-amylase Dgeo_2916 172 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 158421522 Common - Competence protein ComEA related helix-hairpin-helix domain Dgeo_3010 10 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 158421582 Common - ParA-like chromosome partition protein Dgeo_3070 185 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 158421567 Common - transposase, putative Dgeo_3055 25 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 158421558 Nonpathogen - integrase family protein Dgeo_3046 2 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 158421548 Common - peptidase M23B Dgeo_3036 114 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 158421470 Common - hypothetical protein Dgeo_2956 8 None None None 158421560 Nonpathogen - hypothetical protein Dgeo_3048 1 None None None 158421587 Common - DEAD-like helicase Dgeo_3075 29 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 158421605 Nonpathogen - hypothetical protein Dgeo_3094 1 None None None 158421551 Nonpathogen - Phage related protein Dgeo_3039 1 None None None