Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence NC_009930 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 158341059 Nonpathogen - hypothetical protein AM1_E0143 1 None None None 158341017 Nonpathogen - hypothetical protein AM1_E0101 1 None None None 158341123 Nonpathogen - hypothetical protein AM1_E0207 1 None None None 158341116 Nonpathogen - hypothetical protein AM1_E0200 1 None None None 158341063 Nonpathogen - hypothetical protein AM1_E0147 1 None None None 158340981 Common - hypothetical protein AM1_E0064 10 COG5635 COG5635, Predicted NTPase (NACHT family) Signal transduction mechanisms 158340925 Common - transposase, IS4 family AM1_E0008 30 None None None 158340968 Nonpathogen - hypothetical protein AM1_E0051 1 None None None 158340982 Nonpathogen - hypothetical protein AM1_E0065 2 None None None 158341046 Nonpathogen - hypothetical protein AM1_E0130 3 None None None 158340961 Nonpathogen - hypothetical protein AM1_E0044 1 None None None 158340951 Common - KilA-N domain family protein AM1_E0034 4 None None None 158340991 Common - hypothetical protein AM1_E0074 21 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 158341071 Nonpathogen - hypothetical protein AM1_E0155 1 None None None 158340972 Nonpathogen - hypothetical protein AM1_E0055 1 None None None 158341093 Common - hypothetical protein AM1_E0177 9 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 158340949 Nonpathogen - hypothetical protein AM1_E0032 1 None None None 158340936 Nonpathogen - hypothetical protein AM1_E0019 1 None None None 158340940 Nonpathogen - hypothetical protein AM1_E0023 2 None None None 158341065 Nonpathogen - hypothetical protein AM1_E0149 1 None None None 158340998 Common - transposase, orfB, putative AM1_E0081 10 None None None 158341022 Common - hypothetical protein AM1_E0106 4 COG1598 COG1598, Uncharacterized conserved protein Function unknown 158341045 Common - hypothetical protein AM1_E0129 28 COG3422 COG3422, Uncharacterized conserved protein Function unknown 158341074 Nonpathogen - hypothetical protein AM1_E0158 1 None None None 158341038 Nonpathogen - hypothetical protein AM1_E0122 2 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 158341029 Nonpathogen - hypothetical protein AM1_E0113 4 None None None 158341079 Common rpoD RNA polymerase sigma-70 factor AM1_E0163 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 158341107 Nonpathogen - hypothetical protein AM1_E0191 1 None None None 158341036 Nonpathogen - hypothetical protein AM1_E0120 1 None None None 158341086 Nonpathogen - hypothetical protein AM1_E0170 1 None None None 158341138 Common - hypothetical protein AM1_E0222 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 158341115 Common - hypothetical protein AM1_E0199 3 None None None 158340948 Nonpathogen - hypothetical protein AM1_E0031 1 None None None 158341139 Nonpathogen - hypothetical protein AM1_E0223 1 None None None 158341097 Nonpathogen - pentapeptide repeat protein AM1_E0181 8 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 158340937 Nonpathogen - hypothetical protein AM1_E0020 1 None None None 158341089 Nonpathogen - hypothetical protein AM1_E0173 1 None None None 158341124 Nonpathogen - hypothetical protein AM1_E0208 4 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 158341105 Nonpathogen - hypothetical protein AM1_E0189 1 None None None 158340997 Common - transposition helper protein, putative AM1_E0080 46 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 158341020 Nonpathogen - hypothetical protein AM1_E0104 3 None None None 158340983 Nonpathogen - hypothetical protein AM1_E0066 1 None None None 158340990 Nonpathogen - hypothetical protein AM1_E0073 1 None None None 158341094 Nonpathogen - hypothetical protein AM1_E0178 1 None None None 158341027 Common - phage integrase AM1_E0111 195 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 158340960 Nonpathogen - hypothetical protein AM1_E0043 1 None None None 158340926 Nonpathogen - hypothetical protein AM1_E0009 1 None None None 158340967 Nonpathogen - hypothetical protein AM1_E0050 1 None None None 158341073 Nonpathogen - hypothetical protein AM1_E0157 1 None None None 158341047 Nonpathogen - hypothetical protein AM1_E0131 1 None None None 158341014 Nonpathogen - hypothetical protein AM1_E0098 1 None None None 158341050 Common - hypothetical protein AM1_E0134 5 None None None 158340952 Nonpathogen - hypothetical protein AM1_E0035 1 None None None 158340973 Nonpathogen - hypothetical protein AM1_E0056 1 None None None 158341095 Nonpathogen - hypothetical protein AM1_E0179 1 None None None 158341114 Common - TPR repeat domain protein AM1_E0198 107 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 158341005 Common - hypothetical protein AM1_E0089 107 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 158341057 Nonpathogen - hypothetical protein AM1_E0141 1 None None None 158341039 Common - hypothetical protein AM1_E0123 61 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 158341087 Nonpathogen - hypothetical protein AM1_E0171 1 None None None 158341066 Nonpathogen - hypothetical protein AM1_E0150 1 None None None 158341030 Nonpathogen - hypothetical protein AM1_E0114 1 None None None 158340918 Common - hypothetical protein AM1_E0001 8 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 158341035 Common - hypothetical protein AM1_E0119 3 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 158340996 Common - transposase AM1_E0079 63 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 158341131 Common - addiction module antitoxin, Axe family protein AM1_E0215 21 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 158340923 Common - transposase, IS4 family, putative AM1_E0006 20 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 158341118 Nonpathogen - hypothetical protein AM1_E0202 1 None None None 158340995 Common - transposase-associated ATP-binding protein, putative AM1_E0078 78 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 158341061 Nonpathogen - hypothetical protein AM1_E0145 1 None None None 158341125 Nonpathogen - hypothetical protein AM1_E0209 1 None None None 158340984 Nonpathogen - hypothetical protein AM1_E0067 1 None None None 158340958 Nonpathogen - hypothetical protein AM1_E0041 1 None None None 158341031 Common - neutral ceramidase, putative AM1_E0115 12 None None None 158341081 Nonpathogen - hypothetical protein AM1_E0165 1 None None None 158341002 Common - methyltransferase, FkbM family AM1_E0086 17 None None None 158340934 Nonpathogen - hypothetical protein AM1_E0017 1 None None None 158341088 Nonpathogen - hypothetical protein AM1_E0172 1 None None None 158341034 Nonpathogen - hypothetical protein AM1_E0118 1 None None None 158341076 Nonpathogen - hypothetical protein AM1_E0160 1 None None None 158341064 Nonpathogen - hypothetical protein AM1_E0148 1 None None None 158341015 Common - hypothetical protein AM1_E0099 16 None None None 158340979 Nonpathogen - hypothetical protein AM1_E0062 1 None None None 158341048 Common - nuclease, SNase-like protein AM1_E0132 63 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 158340930 Common - ParA protein, putative AM1_E0013 81 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 158340941 Nonpathogen - hypothetical protein AM1_E0024 1 None None None 158341062 Nonpathogen - hypothetical protein AM1_E0146 2 None None None 158341069 Common - ATPase of unknown function AAA-5 AM1_E0153 40 COG0714 COG0714, MoxR-like ATPases General function prediction only 158340994 Common - transposase, putative AM1_E0077 46 None None None 158341025 Common - WD-repeat protein AM1_E0109 65 COG2319 COG2319, FOG: WD40 repeat General function prediction only 158341058 Nonpathogen - hypothetical protein AM1_E0142 1 None None None 158341055 Nonpathogen - hypothetical protein AM1_E0139 6 None None None 158340935 Nonpathogen - hypothetical protein AM1_E0018 1 None None None 158341075 Nonpathogen - hypothetical protein AM1_E0159 1 None None None 158341132 Common - addiction module toxin, Txe/YoeB family protein AM1_E0216 52 COG4115 COG4115, Uncharacterized protein conserved in bacteria Function unknown 158340959 Nonpathogen - hypothetical protein AM1_E0042 1 None None None 158340969 Nonpathogen - hypothetical protein AM1_E0052 1 None None None 158340942 Common - hypothetical protein AM1_E0025 10 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 158340950 Nonpathogen - hypothetical protein AM1_E0033 1 None None None 158341126 Nonpathogen - hypothetical protein AM1_E0210 1 None None None 158341008 Common - hypothetical protein AM1_E0092 5 COG1475 Spo0J, Predicted transcriptional regulators Transcription 158341032 Nonpathogen - hypothetical protein AM1_E0116 1 None None None 158341082 Nonpathogen - hypothetical protein AM1_E0166 1 None None None 158341003 Common - PIN domain protein AM1_E0087 53 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 158341028 Nonpathogen - hypothetical protein AM1_E0112 1 None None None 158341106 Common - hypothetical protein AM1_E0190 63 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 158341127 Common - peptidase M23 domain protein AM1_E0211 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 158341080 Nonpathogen - hypothetical protein AM1_E0164 1 None None None 158341033 Nonpathogen - hypothetical protein AM1_E0117 1 None None None 158341049 Common - hypothetical protein AM1_E0133 22 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 158340924 Nonpathogen - hypothetical protein AM1_E0007 2 None None None 158341056 Nonpathogen - hypothetical protein AM1_E0140 1 None None None 158341117 Nonpathogen - hypothetical protein AM1_E0201 1 None None None 158341040 Common recA protein RecA AM1_E0124 214 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 158341041 Nonpathogen - hypothetical protein AM1_E0125 1 None None None 158340921 Nonpathogen - hypothetical protein AM1_E0004 1 None None None 158341009 Common - esterase/lipase, putative AM1_E0093 37 COG1647 COG1647, Esterase/lipase General function prediction only 158341012 Common - cytochrome P450 family protein, putative AM1_E0096 83 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 158341000 Common - hydrolase, alpha/beta fold family AM1_E0084 130 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 158340933 Nonpathogen - hypothetical protein AM1_E0016 1 None None None 158341078 Common - hypothetical protein AM1_E0162 10 None None None 158341026 Nonpathogen - hypothetical protein AM1_E0110 1 None None None 158341133 Nonpathogen - hypothetical protein AM1_E0217 1 None None None 158340986 Nonpathogen - hypothetical protein AM1_E0069 1 None None None 158340985 Nonpathogen - hypothetical protein AM1_E0068 1 None None None 158341013 Nonpathogen - hypothetical protein AM1_E0097 1 None None None 158340944 Nonpathogen - hypothetical protein AM1_E0027 1 None None None 158340970 Nonpathogen - hypothetical protein AM1_E0053 1 None None None 158341091 Common - transposase-associated ATP-binding protein, putative AM1_E0175 93 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 158340920 Nonpathogen - hypothetical protein AM1_E0003 1 None None None 158341111 Common - hypothetical protein AM1_E0195 12 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 158341128 Nonpathogen - hypothetical protein AM1_E0212 1 None None None 158341130 Nonpathogen - hypothetical protein AM1_E0214 1 None None None 158340977 Nonpathogen - hypothetical protein AM1_E0060 1 None None None 158341100 Common - strictosidine synthase family protein AM1_E0184 30 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 158341077 Nonpathogen - hypothetical protein AM1_E0161 1 None None None 158341110 Nonpathogen - hypothetical protein AM1_E0194 1 None None None 158341042 Nonpathogen - hypothetical protein AM1_E0126 1 None None None 158341018 Nonpathogen - hypothetical protein AM1_E0102 1 None None None 158340963 Common - helix-turn-helix domain protein AM1_E0046 31 COG5606 COG5606, Uncharacterized conserved small protein Function unknown 158340956 Common - hypothetical protein AM1_E0039 24 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 158341043 Common - exoribonuclease II AM1_E0127 192 COG0557 VacB, Exoribonuclease R Transcription 158341083 Nonpathogen - hypothetical protein AM1_E0167 1 None None None 158341006 Nonpathogen - hypothetical protein AM1_E0090 1 None None None 158340922 Common - hypothetical protein AM1_E0005 9 COG5635 COG5635, Predicted NTPase (NACHT family) Signal transduction mechanisms 158341053 Nonpathogen - hypothetical protein AM1_E0137 4 None None None 158341001 Nonpathogen - hypothetical protein AM1_E0085 1 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 158341134 Nonpathogen - hypothetical protein AM1_E0218 1 None None None 158341119 Nonpathogen - hypothetical protein AM1_E0203 1 None None None 158341092 Common - transposase, putative AM1_E0176 42 None None None 158340987 Nonpathogen - hypothetical protein AM1_E0070 1 None None None 158340978 Nonpathogen - hypothetical protein AM1_E0061 1 None None None 158340971 Nonpathogen - hypothetical protein AM1_E0054 1 None None None 158341135 Common - carboxylesterase NP, putative AM1_E0219 109 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 158340943 Common - hypothetical protein AM1_E0026 3 None None None 158340993 Nonpathogen - hypothetical protein AM1_E0076 3 None None None 158341023 Nonpathogen - hypothetical protein AM1_E0107 1 None None None 158340962 Nonpathogen - hypothetical protein AM1_E0045 1 None None None 158340957 Nonpathogen - hypothetical protein AM1_E0040 1 None None None 158341120 Nonpathogen - hypothetical protein AM1_E0204 1 None None None 158341129 Common - RNA polymerase sigma factor domain protein AM1_E0213 215 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 158340919 Common - hypothetical protein AM1_E0002 4 None None None 158341007 Common - Conserved CobQ/CobB/MinD/ParA domain AM1_E0091 201 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 158341108 Common - pentapeptide repeat protein AM1_E0192 98 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 158341054 Nonpathogen - hypothetical protein AM1_E0138 1 None None None 158341122 Nonpathogen - hypothetical protein AM1_E0206 1 None None None 158341010 Common - hypothetical protein AM1_E0094 21 None None None 158341084 Nonpathogen - hypothetical protein AM1_E0168 1 None None None 158341024 Common - hypothetical protein AM1_E0108 127 None None None 158340974 Nonpathogen - hypothetical protein AM1_E0057 1 None None None 158341044 Nonpathogen - hypothetical protein AM1_E0128 5 None None None 158341067 Nonpathogen - hypothetical protein AM1_E0151 1 None None None 158341060 Nonpathogen - hypothetical protein AM1_E0144 1 None None None 158340966 Nonpathogen - hypothetical protein AM1_E0049 1 None None None 158341051 Nonpathogen - hypothetical protein AM1_E0135 1 None None None 158340953 Nonpathogen - hypothetical protein AM1_E0036 2 None None None 158341098 Nonpathogen - hypothetical protein AM1_E0182 1 None None None 158340928 Nonpathogen - hypothetical protein AM1_E0011 1 None None None 158340939 Common - polysaccharide deacetylase AM1_E0022 28 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 158341112 Nonpathogen - hypothetical protein AM1_E0196 1 None None None 158341019 Common - transcriptional regulator, putative AM1_E0103 145 COG1733 COG1733, Predicted transcriptional regulators Transcription 158341096 Nonpathogen - hypothetical protein AM1_E0180 1 None None None 158340965 Nonpathogen - hypothetical protein AM1_E0048 1 None None None 158340992 Nonpathogen - hypothetical protein AM1_E0075 1 None None None 158341104 Nonpathogen - hypothetical protein AM1_E0188 2 None None None 158341102 Nonpathogen - hypothetical protein AM1_E0186 1 None None None 158340988 Common - TrwC protein, putative AM1_E0071 41 None None None 158340947 Nonpathogen - hypothetical protein AM1_E0030 1 None None None 158341136 Common - hypothetical protein AM1_E0220 50 COG4804 COG4804, Uncharacterized conserved protein Function unknown 158340927 Nonpathogen - hypothetical protein AM1_E0010 1 None None None 158341113 Nonpathogen - hypothetical protein AM1_E0197 6 None None None 158340954 Common - RNA polymerase sigma-70 factor AM1_E0037 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 158341070 Common - hypothetical protein AM1_E0154 33 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 158341121 Nonpathogen - hypothetical protein AM1_E0205 3 None None None 158341072 Nonpathogen - hypothetical protein AM1_E0156 1 None None None 158340932 Nonpathogen - hypothetical protein AM1_E0015 1 None None None 158340980 Nonpathogen - hypothetical protein AM1_E0063 1 None None None 158341085 Nonpathogen - hypothetical protein AM1_E0169 1 None None None 158341004 Common - prevent-host-death family protein, putative AM1_E0088 18 None None None 158341109 Common - hypothetical protein AM1_E0193 16 None None None 158341011 Common - exoribonuclease II AM1_E0095 192 COG0557 VacB, Exoribonuclease R Transcription 158341099 Nonpathogen - acetyltransferase, putative AM1_E0183 6 COG0456 RimI, Acetyltransferases General function prediction only 158340975 Nonpathogen - hypothetical protein AM1_E0058 1 None None None 158340929 Nonpathogen - hypothetical protein AM1_E0012 1 None None None 158340938 Nonpathogen - hypothetical protein AM1_E0021 1 None None None 158341052 Nonpathogen - hypothetical protein AM1_E0136 1 None None None 158341103 Nonpathogen - hypothetical protein AM1_E0187 1 None None None 158341037 Common - hypothetical protein AM1_E0121 24 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 158341101 Nonpathogen - hypothetical protein AM1_E0185 1 None None None 158341068 Nonpathogen - hypothetical protein AM1_E0152 1 None None None 158340955 Common - haemagglutination activity domain protein AM1_E0038 17 COG3210 FhaB, Large exoproteins involved in heme utilization or adhesion Intracellular trafficking and secretion 158341021 Nonpathogen - hypothetical protein AM1_E0105 3 None None None 158340999 Nonpathogen - glycosyl transferase, group 2 family protein, putative AM1_E0083 3 None None None 158340964 Common - hypothetical protein AM1_E0047 29 COG4679 COG4679, Phage-related protein Function unknown 158340931 Common - phage integrase family protein AM1_E0014 204 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 158340989 Nonpathogen - hypothetical protein AM1_E0072 1 None None None 158340976 Nonpathogen - hypothetical protein AM1_E0059 1 None None None 158340946 Common - hypothetical protein AM1_E0029 9 COG1476 COG1476, Predicted transcriptional regulators Transcription 158340945 Nonpathogen - hypothetical protein AM1_E0028 1 None None None 158341090 Common - hypothetical protein AM1_E0174 26 COG4828 COG4828, Predicted membrane protein Function unknown 158341137 Nonpathogen - hypothetical protein AM1_E0221 3 None None None 158341016 Common - short-chain dehydrogenase/reductase SDR, putative AM1_E0100 228 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only