Rickettsia massiliae MTU5, complete genome NC_009900 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 157964673 Common dnaB Replicative DNA helicase RMA_0840 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 157964956 Common - hypothetical protein RMA_1265 13 None None None 157964613 Common - Transposase and inactivated derivative RMA_0747 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 157964498 Common dapF Diaminopimelate epimerase RMA_0596 196 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 157964617 Common dnaE2 DNA polymerase III alpha chain RMA_0751 204 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 157964608 Pathogen - hypothetical protein RMA_0739 1 None None None 157964504 Common leuS Leucyl-tRNA synthetase RMA_0602 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964926 Common polA DNA polymerase I RMA_1220 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 157964283 Common - Putative toxin of toxin-antitoxin (TA) system StbD RMA_0299 11 COG4115 COG4115, Uncharacterized protein conserved in bacteria Function unknown 157964781 Common rplQ 50S ribosomal protein L17 RMA_1015 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 157964157 Common - ABC-type transporter RMA_0132 45 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 157964628 Common - Putative acetyltransferase RMA_0767 2 COG5628 COG5628, Predicted acetyltransferase General function prediction only 157964106 Common rplI 50S ribosomal protein L9 RMA_0070 216 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 157964664 Common spl1 NifS-like protein RMA_0824 234 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 157964601 Common traH F pilus assembly protein TraH RMA_0730 24 None None None 157964244 Common - Putative 6-pyruvoyl tetrahydropterin synthase RMA_0237 100 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 157964266 Common hscB Co-chaperone Hsc20 RMA_0271 51 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 157964575 Common - Nucleotidyltransferase substrate binding protein RMA_0697 31 None None None 157964455 Common - Transposase and inactivated derivative RMA_0538 46 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964350 Common - hypothetical protein RMA_0377 6 None None None 157964463 Common - Cell filamentation protein Fic RMA_0547 116 COG3177 COG3177, Uncharacterized conserved protein Function unknown 157964102 Common gcp Sialoglycoprotease RMA_0065 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 157964425 Common cyoB Protoheme IX farnesyltransferase RMA_0485 165 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 157964895 Common rplU 50S ribosomal protein L21 RMA_1186 208 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 157964478 Common sppA1 Signal peptide peptidase SppA, 36K type RMA_0562 182 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 157964764 Common - Transposase and inactivated derivative RMA_0987 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157965032 Common alaS Alanyl-tRNA synthetase RMA_1379 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964464 Common - hypothetical protein RMA_0548 1 None None None 157964400 Common - Aminodeoxychorismate lyase RMA_0454 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 157964138 Common - GTP cyclohydrolase I RMA_0110 85 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 157964794 Common rplE 50S ribosomal protein L5 RMA_1028 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 157964095 Common - Sco2 protein precursor RMA_0048 83 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 157964580 Common prfA Peptide chain release factor RF-1 RMA_0703 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 157964186 Common - Nucleotidyltransferase domain RMA_0169 5 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 157964445 Common ampD1 Negative regulator of beta-lactamase expression RMA_0515 63 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 157964878 Common tlc5 ATP/ADP translocase RMA_1166 6 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 157964407 Common topA DNA topoisomerase I RMA_0463 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 157964591 Common - hypothetical protein RMA_0718 2 None None None 157964074 Common trxA Thioredoxin RMA_0002 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 157964232 Pathogen - hypothetical protein RMA_0215 1 None None None 157964261 Common uspA Universal stress protein UspA RMA_0266 42 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 157964990 Common hemA 5-aminolevulinic acid synthase RMA_1326 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 157965013 Common holC DNA polymerase III chi subunit HolC RMA_1359 17 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 157964945 Common nuoG NADH dehydrogenase I chain G RMA_1248 190 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 157964891 Common - Putative methyltransferase RMA_1182 210 COG0313 COG0313, Predicted methyltransferases General function prediction only 157964319 Common ddlB D-alanine--D-alanine ligase RMA_0341 212 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 157964915 Common - Putative AAA+ superfamily ATPase RMA_1209 54 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 157964828 Common ubiE Ubiquinone/menaquinone biosynthesis methlytransferase UbiE RMA_1069 217 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 157964211 Common - hypothetical protein RMA_0194 2 None None None 157964208 Common - hypothetical protein RMA_0191 1 None None None 157964648 Common trpS Tryptophanyl-tRNA synthetase RMA_0803 233 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964173 Common virB6-3 VirB6 RMA_0148 10 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 157964447 Common lysS Lysyl-tRNA synthetase RMA_0525 77 COG1384 LysS, Lysyl-tRNA synthetase (class I) Translation, ribosomal structure and biogenesis 157964846 Common msbA2 Multidrug resistance protein RMA_1108 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 157964906 Common trmE tRNA modification GTPase TrmE RMA_1198 219 COG0486 ThdF, Predicted GTPase General function prediction only 157964694 Pathogen - hypothetical protein RMA_0872 1 None None None 157964533 Common lgtD Glycosyl transferase RMA_0635 200 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 157964802 Common rpsS 30S ribosomal protein S19 RMA_1036 244 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 157964880 Common tlyC Hemolysin C RMA_1168 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 157964162 Common - hypothetical protein RMA_0137 1 None None None 157964889 Common - hypothetical protein RMA_1178 1 COG5510 COG5510, Predicted small secreted protein Function unknown 157964862 Common lpxK Tetraacyldisaccharide 4'-kinase RMA_1126 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 157964369 Pathogen - hypothetical protein RMA_0404 1 None None None 157964572 Common birA Biotin-(acetyl-CoA carboxylase) ligase RMA_0690 191 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 157964302 Common - Transposase and inactivated derivative RMA_0323 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964118 Common def3 Polypeptide deformylase RMA_0087 210 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 157964334 Common typA GTP-binding protein TypA RMA_0356 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 157964423 Pathogen - ATPase components of ABC transporters RMA_0483 1 None None None 157964383 Common hisS Histidyl-tRNA synthetase RMA_0422 248 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964941 Common nuoM NADH dehydrogenase I chain M RMA_1244 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 157964555 Common tlc4 ATP/ADP translocase RMA_0672 7 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 157964932 Common serS Seryl-tRNA synthetase RMA_1233 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964667 Common nuoN1 NADH:ubiquinone oxidoreductase subunit 2 (chain N) RMA_0834 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 157964821 Common - hypothetical protein RMA_1057 18 None None None 157964585 Common himD Integration host factor beta-subunit RMA_0708 12 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 157964428 Common rimM 16S rRNA processing protein RimM RMA_0489 138 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 157964638 Common - Transposase and inactivated derivative RMA_0781 7 None None None 157964305 Common nudH (di)nucleoside polyphosphate hydrolase RMA_0327 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 157964723 Common - Putative antitoxin of toxin-antitoxin RMA_0924 4 COG4710 COG4710, Predicted DNA-binding protein with an HTH domain General function prediction only 157964203 Common rplA 50S ribosomal protein L1 RMA_0186 244 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 157964707 Common mraZ MraZ protein RMA_0896 122 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 157964339 Common ccmB Heme exporter protein B RMA_0361 2 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 157964166 Common rpmE 50S ribosomal protein L31 RMA_0141 3 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 157964288 Common thrS Threonyl-tRNA synthetase RMA_0304 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964290 Common - hypothetical protein RMA_0308 2 None None None 157964761 Common ileS Isoleucyl-tRNA synthetase RMA_0982 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157965020 Common - Antitoxin of toxin-antitoxin RMA_1366 22 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 157964417 Common - hypothetical protein RMA_0477 19 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 157964560 Common - hypothetical protein RMA_0677 180 COG1496 COG1496, Uncharacterized conserved protein Function unknown 157964735 Common scoB Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B RMA_0938 92 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 157964371 Common - hypothetical protein RMA_0408 1 None None None 157965014 Common - Putative permease RMA_1360 35 COG0795 COG0795, Predicted permeases General function prediction only 157964714 Common secA Preprotein translocase secA subunit RMA_0912 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 157964984 Common uvrA Excinuclease ABC subunit A RMA_1319 242 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 157964274 Common fmt Methionyl-tRNA formyltransferase RMA_0280 219 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 157964372 Common cysQ 3'(2'),5'-bisphosphate nucleotidase RMA_0409 191 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 157964330 Common pbpE Penicillin-binding protein 4* RMA_0352 114 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 157964773 Common spoT12 Guanosine polyphosphate pyrophosphohydrolase/synthetase RMA_0996 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 157964545 Common - hypothetical protein RMA_0658 9 None None None 157964778 Common perM Permease PerM-like protein RMA_1008 108 COG0628 PerM, Predicted permease General function prediction only 157964962 Common infA Translation initiation factor IF-1 RMA_1283 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 157964655 Common ampG1 AmpG RMA_0812 100 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 157964299 Common - WD40-like repeat RMA_0320 81 COG1520 COG1520, FOG: WD40-like repeat Function unknown 157964786 Common secY Preprotein translocase secY subunit RMA_1020 244 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 157964198 Common rpsG 30S ribosomal protein S7 RMA_0181 246 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 157964528 Common - Putative hydrolase/acyltransferase RMA_0630 81 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 157964395 Common hslV Heat shock protein HslV RMA_0442 150 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 157964257 Common virB2 VirB2-like protein RMA_0255 1 COG3838 VirB2, Type IV secretory pathway, VirB2 components (pilins) Intracellular trafficking and secretion 157964835 Common proP4 Proline/betaine transporter RMA_1083 113 None None None 157964755 Common corA Magnesium and cobalt transport protein CorA RMA_0971 165 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 157964432 Common - hypothetical protein RMA_0498 188 COG0759 COG0759, Uncharacterized conserved protein Function unknown 157964079 Common fabZ (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase RMA_0007 186 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 157964859 Common himA Integration host factor alpha-subunit RMA_1123 65 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 157964314 Common - hypothetical protein RMA_0336 1 None None None 157965009 Common lipB Putative lipoate-protein ligase B RMA_1349 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 157964550 Common - hypothetical protein RMA_0667 3 COG5375 COG5375, Uncharacterized protein conserved in bacteria Function unknown 157964489 Common lspA Lipoprotein signal peptidase RMA_0575 193 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 157964621 Common dam2 Site-specific DNA adenine methylase RMA_0755 102 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 157964517 Common - Transcriptional regulator, AbrB family RMA_0617 1 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 157964626 Common clpP ATP-dependent Clp protease proteolytic subunit RMA_0760 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 157964982 Common - Phosphatidylethanolamine-binding protein PEBP RMA_1314 94 COG1881 COG1881, Phospholipid-binding protein General function prediction only 157964108 Common ftsH ATP-dependent metalloprotease FtsH RMA_0072 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 157964385 Common tolQ TolQ RMA_0432 152 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 157964719 Common gyrB DNA gyrase subunit B RMA_0917 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 157964728 Common ccmE Cytochrome c-type biogenesis protein ccmE RMA_0929 92 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 157964156 Common vacJ VacJ lipoprotein precursor RMA_0131 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 157964662 Common iscU FeS cluster assembly scaffold IscU RMA_0822 146 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 157964390 Common - HlyD family secretion protein RMA_0437 133 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 157964610 Common - Transposase and inactivated derivative RMA_0742 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964748 Common nrdG Organic radical activating enzyme RMA_0962 170 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 157964893 Common tatA Twin-arginine translocation protein TatA RMA_1184 2 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 157964759 Common rpsU 30S ribosomal protein S21 RMA_0978 2 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 157964495 Pathogen - hypothetical protein RMA_0581 1 None None None 157964502 Common dnaN DNA polymerase III beta chain RMA_0600 216 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 157964672 Common ubiX 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RMA_0839 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 157964150 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase RMA_0125 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 157964656 Common tlc3 ATP/ADP translocase RMA_0816 7 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 157964090 Common dsbG Protein-disulfide isomerase RMA_0030 69 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 157964865 Common tgt Queuine tRNA-ribosyltransferase RMA_1133 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 157964477 Common tlpA Thiol:disulfide interchange protein tlpA RMA_0561 126 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 157964677 Common radA DNA repair protein RadA RMA_0848 201 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 157964076 Common rfbA O-antigen export system permease protein RfbA RMA_0004 108 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 157965030 Common rpoD RNA polymerase sigma factor RMA_1377 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 157964577 Common - hypothetical protein RMA_0700 1 COG5346 COG5346, Predicted membrane protein Function unknown 157964255 Common coq7 Ubiquinone biosynthesis protein coq7 RMA_0253 47 COG2941 CAT5, Ubiquinone biosynthesis protein COQ7 Coenzyme metabolism 157964453 Common mdh Malate dehydrogenase RMA_0536 193 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 157964268 Common uvrB Excinuclease ABC subunit B RMA_0273 228 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 157964921 Common pal Peptidoglycan-associated lipoprotein precursor RMA_1215 149 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 157964184 Common - tRNA/rRNA methyltransferase RMA_0167 154 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 157964689 Common - hypothetical protein RMA_0862 7 COG5304 COG5304, Uncharacterized protein conserved in bacteria Function unknown 157964136 Common secB Protein-export protein secB RMA_0108 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 157964461 Common folE GTP cyclohydrolase I RMA_0545 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 157964871 Common - hypothetical protein RMA_1147 45 COG3494 COG3494, Uncharacterized protein conserved in bacteria Function unknown 157964721 Common mgtE Magnesium transporter RMA_0919 160 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 157964999 Common glyS Glycyl-tRNA synthetase beta chain RMA_1336 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 157964606 Common traA_Ti Conjugal transfer protein TraA RMA_0735 99 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 157964427 Common asmA Outer membrane assembly protein RMA_0488 74 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 157964712 Common - Putative DNA alkylation repair enzyme RMA_0903 20 COG4912 COG4912, Predicted DNA alkylation repair enzyme DNA replication, recombination, and repair 157964810 Common - hypothetical protein RMA_1044 1 None None None 157964509 Common envZ Osmolarity sensor protein EnvZ RMA_0607 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 157964097 Common cvpA Putative colicin V production membrane protein RMA_0050 7 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 157964688 Common - hypothetical protein RMA_0861 11 None None None 157964743 Common dnaA Chromosomal replication initiator protein DnaA RMA_0948 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 157964636 Common mltE2 Soluble lytic murein transglycosylase and related regulatory protein RMA_0779 45 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 157964322 Common - Membrane protein implicated in regulation of membrane protease activity RMA_0344 2 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 157964928 Common udg UDP-glucose 6-dehydrogenase RMA_1229 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 157964349 Common lepA GTP-binding protein LepA RMA_0373 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 157964705 Common ftsL Cell division protein FtsL RMA_0894 1 COG5462 COG5462, Predicted secreted (periplasmic) protein Function unknown 157964784 Common rpsM 30S ribosomal protein S13 RMA_1018 232 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 157964218 Common gatB Glutamyl-tRNA amidotransferase subunit B RMA_0201 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 157964587 Common - Phage-associated protein RMA_0714 23 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 157964665 Common iscR Iron-sulfur cluster assembly transcription factor IscR RMA_0825 154 COG1959 COG1959, Predicted transcriptional regulator Transcription 157964997 Common hemK Methylase of polypeptide chain release factors RMA_1334 226 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 157964631 Common - hypothetical protein RMA_0772 2 None None None 157964332 Common pdhA Pyruvate dehydrogenase e1 component, alpha subunit precursor RMA_0354 162 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 157964148 Common rpsB 30S ribosomal protein S2 RMA_0121 231 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 157964931 Common tatC Sec-independent protein translocase protein TatC RMA_1232 202 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 157964947 Common acnA Aconitate hydratase RMA_1250 223 COG1048 AcnA, Aconitase A Energy production and conversion 157964540 Common folD Methylenetetrahydrofolate dehydrogenase RMA_0646 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 157964164 Pathogen - hypothetical protein RMA_0139 1 None None None 157964542 Common famC P pilus assembly protein, chaperone PapD RMA_0648 4 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 157964815 Common - NifU-like protein RMA_1051 85 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 157964623 Common - hypothetical protein RMA_0757 2 None None None 157964111 Common lgt Prolipoprotein diacylglyceryl transferase RMA_0078 207 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 157964263 Common - hypothetical protein RMA_0268 2 None None None 157964844 Common exsB Trans-regulatory protein ExsB RMA_1106 176 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 157964317 Common murC UDP-N-acetylmuramate--alanine ligase RMA_0339 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 157964160 Common - ABC transporter permease protein RMA_0135 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 157964286 Common purC Phosphoribosylaminoimidazole-succinocarboxamide synthase RMA_0302 145 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 157964410 Common - Putative membrane-associated metal-dependent hydrolase RMA_0470 70 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 157964152 Common aatA Aspartate aminotransferase A RMA_0127 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 157965011 Common nhaA Na+/H+ antiporter NhaA RMA_1351 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 157964904 Common - hypothetical protein RMA_1196 25 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 157964976 Common - Putative outer surface protein RMA_1308 9 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 157964971 Common ftsK Cell division protein FtsK RMA_1298 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 157964121 Common ndk Nucleoside diphosphate kinase RMA_0090 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 157965036 Common proP7 Proline/betaine transporter RMA_1384 124 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 157964515 Common sucD Succinyl-CoA synthetase alpha chain RMA_0613 211 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 157964867 Common - ABC transporter substrate binding protein RMA_1143 74 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 157964853 Common ccmF Cytochrome c-type biogenesis protein ccmF RMA_1115 129 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 157964547 Common exoC Phosphomannomutase RMA_0664 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 157964570 Common sodB Superoxide dismutase RMA_0688 207 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 157964359 Common mnhC Multisubunit Na+/H+ antiporter, MnhC subunit RMA_0394 90 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 157964843 Common rimJ Ribosomal-protein-alanine acetyltransferase RMA_1105 93 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 157964213 Common - hypothetical protein RMA_0196 2 None None None 157964230 Common rrmJ Ribosomal RNA large subunit methyltransferase J RMA_0213 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 157964641 Common - 5-Formyltetrahydrofolate cyclo-ligase RMA_0787 82 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 157964179 Common nuoF NADH dehydrogenase I chain F RMA_0162 165 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 157964471 Common osmY Putative periplasmic or secreted lipoprotein RMA_0555 61 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 157964934 Common - hypothetical protein RMA_1235 2 None None None 157964805 Common rplD 50S ribosomal protein L4 RMA_1039 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 157964381 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase RMA_0420 219 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 157964757 Common - Transposase and inactivated derivative RMA_0973 11 None None None 157965007 Common rpsP 30S ribosomal protein S16 RMA_1347 209 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 157964130 Common dgt Deoxyguanosinetriphosphate triphosphohydrolase RMA_0102 163 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 157964567 Common bpl1 Biotin-protein ligase RMA_0685 7 COG4285 COG4285, Uncharacterized conserved protein Function unknown 157964526 Common gpsA Glycerol-3-phosphate dehydrogenase RMA_0628 211 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 157964646 Common mccF2 Microcin C7 resistance protein RMA_0798 48 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 157964229 Common nusB N utilization substance protein B RMA_0212 64 COG0781 NusB, Transcription termination factor Transcription 157964337 Common - Monovalent cation/proton antiporter, MnhG/PhaG subunit RMA_0359 8 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 157964696 Common comF2 Competence protein F RMA_0882 117 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 157964376 Common thyX Thymidylate synthase, flavin-dependent RMA_0415 32 COG1351 THY1, Predicted alternative thymidylate synthase Nucleotide transport and metabolism 157964732 Common - hypothetical protein RMA_0933 4 None None None 157964833 Common metG Methionyl-tRNA synthetase RMA_1081 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964327 Common rne Ribonuclease E RMA_0349 184 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 157964958 Common kefB Glutathione-regulated potassium-efflux system protein KefB RMA_1267 178 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 157964242 Common gltP Na+/H+-dicarboxylate symporter RMA_0235 160 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 157964582 Common - Putative methyltransferase RMA_0705 26 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 157964086 Common atpX ATP synthase B chain RMA_0026 39 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 157964297 Common - hypothetical protein RMA_0318 45 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 157964374 Common lacA Ribose-5-phosphate isomerase RMA_0411 128 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 157964193 Common sdhC Succinate dehydrogenase cytochrome b-556 subunit RMA_0176 72 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 157964872 Common coaE Dephospho-CoA kinase RMA_1148 126 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 157964312 Common emrA Multidrug resistance protein A RMA_0334 132 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 157964270 Common atm1 Multidrug resistance protein Atm1 RMA_0275 249 COG5265 ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components Posttranslational modification, protein turnover, chaperones 157964354 Common nuoL3 NADH dehydrogenase I chain N RMA_0389 75 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 157964966 Common pldA Phospholipase D superfamily protein PLD RMA_1289 30 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 157965029 Common dnaG DNA primase RMA_1376 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 157964684 Common - hypothetical protein RMA_0855 159 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 157964679 Common recO DNA repair protein RecO RMA_0850 37 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 157964775 Common groES 10 kDa chaperonin RMA_0998 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 157964099 Common - hypothetical protein RMA_0057 1 None None None 157964899 Common - Putative Zn-dependent hydrolases of the beta-lactamase fold RMA_1190 76 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 157964727 Pathogen - hypothetical protein RMA_0928 1 None None None 157964687 Common tyrS Tyrosyl-tRNA synthetase RMA_0860 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964325 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase RMA_0347 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 157964119 Common tlc1 ATP/ADP translocase RMA_0088 7 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 157964269 Common grxC1 Glutaredoxin, GrxC family RMA_0274 111 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 157964347 Common - hypothetical protein RMA_0369 1 None None None 157964798 Common rpmC 50S ribosomal protein L29 RMA_1032 1 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 157964604 Common traD_F Putative conjugative transfer protein TraD RMA_0733 46 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 157964467 Common msbA1 Multidrug resistance protein RMA_0551 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 157964996 Common - Ribosomal large subunit pseudouridine synthases RluD subfamily protein RMA_1333 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 157964363 Common virB8-2 VirB8 RMA_0398 26 COG3736 VirB8, Type IV secretory pathway, component VirB8 Intracellular trafficking and secretion 157964480 Common mltE1 Soluble lytic murein transglycosylase precursor RMA_0564 147 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 157964131 Common argS Arginyl-tRNA synthetase RMA_0103 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964408 Common tdpX1 Thioredoxin peroxidase 1 RMA_0468 223 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 157964189 Common hflK Protease activity modulator HflK RMA_0172 157 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 157964472 Common ispZ Intracellular septation protein A RMA_0556 92 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 157964140 Common pntB NAD(p) transhydrogenase subunit beta RMA_0112 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 157964908 Common - hypothetical protein RMA_1200 35 None None None 157964595 Common - Conjugative transfer protein TraC RMA_0722 69 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 157965001 Common vapC3 Toxin of toxin-antitoxin RMA_1338 49 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 157964154 Common - Antitoxin of toxin-antitoxin RMA_0129 46 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 157964437 Common nuoA NADH dehydrogenase I chain A RMA_0504 163 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 157964353 Common ptrB Protease II RMA_0388 105 COG1770 PtrB, Protease II Amino acid transport and metabolism 157964343 Common - Endo/excinuclease amino terminal domain protein RMA_0365 34 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 157964692 Pathogen - hypothetical protein RMA_0869 1 None None None 157964824 Common - hypothetical protein RMA_1060 1 None None None 157964793 Common rpsN 30S ribosomal protein S14 RMA_1027 197 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 157964380 Common - hypothetical protein RMA_0419 2 None None None 157964442 Common - hypothetical protein RMA_0511 1 None None None 157964918 Common mreC Rod shape-determining protein MreC RMA_1212 156 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 157964978 Common ccmC Heme exporter protein C RMA_1310 114 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 157964618 Common traD_Ti Conjugal transfer protein TraD RMA_0752 5 None None None 157964248 Common comL DNA uptake lipoprotein RMA_0243 115 COG4105 ComL, DNA uptake lipoprotein General function prediction only 157964236 Common - hypothetical protein RMA_0219 10 COG2155 COG2155, Uncharacterized conserved protein Function unknown 157964590 Common traE Conjugative transfer protein TraE RMA_0717 2 None None None 157964181 Common rnc Ribonuclease III RMA_0164 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 157964806 Common rplC 50S ribosomal protein L3 RMA_1040 222 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 157964532 Pathogen - hypothetical protein RMA_0634 1 None None None 157964741 Common - Tetratricopeptide repeat-containing protein RMA_0946 29 COG2938 COG2938, Uncharacterized conserved protein Function unknown 157964885 Common - Serine esterase RMA_1173 74 COG0400 COG0400, Predicted esterase General function prediction only 157965035 Common - hypothetical protein RMA_1382 1 None None None 157964832 Common tatD Putative deoxyribonuclease TatD RMA_1080 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 157964762 Common accC Acetyl-CoA carboxylase, biotin carboxylase RMA_0985 240 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 157964988 Common - hypothetical protein RMA_1324 12 COG1872 COG1872, Uncharacterized conserved protein Function unknown 157964293 Common - Ankyrin repeat RMA_0314 1 None None None 157964660 Common potE Putrescine-ornithine antiporter RMA_0820 167 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 157964579 Common pdhC Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase RMA_0702 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 157964420 Common - hypothetical protein RMA_0480 2 None None None 157964670 Common - hypothetical protein RMA_0837 1 None None None 157964092 Common - Putative methyltransferase RMA_0032 38 COG4797 COG4797, Predicted regulatory domain of a methyltransferase General function prediction only 157964128 Common kdsA 3-deoxy-8-phosphooctulonate synthase RMA_0097 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 157964392 Common asd Aspartate-semialdehyde dehydrogenase RMA_0439 235 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 157964309 Common - hypothetical protein RMA_0331 6 None None None 157964224 Common emrB MFS-type multidrug resistance protein B RMA_0207 189 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 157964647 Common hemC Porphobilinogen deaminase RMA_0799 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 157964388 Common spoT2 Guanosine polyphosphate pyrophosphohydrolase/synthetase RMA_0435 204 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 157964537 Common lon1 ATP-dependent protease La RMA_0639 209 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 157964240 Common ffh Signal recognition particle protein RMA_0223 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 157964508 Common uppS Undecaprenyl pyrophosphate synthetase RMA_0606 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 157964451 Common - Transcriptional regulator, AbrB family RMA_0531 3 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 157964535 Common - hypothetical protein RMA_0637 2 None None None 157964412 Common - Plasmid maintenance system antidote protein RMA_0472 70 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 157964733 Common recG ATP-dependent DNA helicase RecG RMA_0934 236 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 157964278 Common abcT3 Multidrug resistance ABC transporter ATP-binding protein RMA_0294 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 157964195 Common sdhA Succinate dehydrogenase flavoprotein subunit RMA_0178 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 157964774 Common groEL 60 kDa chaperonin RMA_0997 233 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 157964419 Common - Efflux transporter, RND family, MFP subunit RMA_0479 143 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 157964083 Common pcnB Poly(A) polymerase RMA_0019 201 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 157964738 Common murF UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase RMA_0943 210 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 157964818 Common cspA Cold shock-like protein RMA_1054 175 COG1278 CspC, Cold shock proteins Transcription 157964378 Common rpoH RNA polymerase sigma-32 factor RMA_0417 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 157964811 Common fumC Fumarate hydratase RMA_1045 223 COG0114 FumC, Fumarase Energy production and conversion 157964252 Common - hypothetical protein RMA_0250 1 None None None 157964658 Common ispB Octaprenyl-diphosphate synthase RMA_0818 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 157964310 Common psd Phosphatidylserine decarboxylase RMA_0332 96 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 157964169 Common virB3 VirB3 RMA_0144 17 COG3702 VirB3, Type IV secretory pathway, VirB3 components Intracellular trafficking and secretion 157965024 Common lolA Outer membrane lipoprotein-sorting protein LolA RMA_1371 1 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 157964133 Common parC Topoisomerase IV subunit A RMA_0105 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 157964530 Pathogen - hypothetical protein RMA_0632 1 None None None 157964485 Common - Putative glutamine amidotransferase RMA_0569 142 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 157964651 Common - Putative hydrolase of the alpha/beta superfamily RMA_0806 88 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 157964809 Common - tRNA/rRNA methyltransferase RMA_1043 214 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 157964190 Common hflC2 Membrane protease subunit, stomatin/prohibitin-like protein RMA_0173 216 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 157964458 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase RMA_0542 137 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 157964995 Common - Uracil-DNA glycosylase, family 4 RMA_1332 152 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 157964584 Common sppA2 Signal peptide peptidase SppA, 36K type RMA_0707 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 157964782 Common rpoA DNA-directed RNA polymerase alpha chain RMA_1016 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 157964077 Common gltD NADPH-dependent glutamate synthase beta chain RMA_0005 107 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 157964357 Common nuoL2 NADH dehydrogenase I chain L RMA_0392 207 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 157964751 Common rpmH 50S ribosomal protein L34 RMA_0965 193 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 157964952 Common atpH ATP synthase delta chain RMA_1255 156 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 157964565 Common ppdK Pyruvate,phosphate dikinase precursor RMA_0683 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 157964474 Common - hypothetical protein RMA_0558 19 None None None 157965002 Common - Putative antitoxin of toxin-antitoxin RMA_1339 5 None None None 157964564 Common - hypothetical protein RMA_0682 1 None None None 157964851 Common - hypothetical protein RMA_1113 2 None None None 157964177 Common - hypothetical protein RMA_0160 37 COG3750 COG3750, Uncharacterized protein conserved in bacteria Function unknown 157964937 Common - Putative methyltransferase RMA_1238 46 COG4797 COG4797, Predicted regulatory domain of a methyltransferase General function prediction only 157964901 Pathogen - hypothetical protein RMA_1193 1 None None None 157964644 Common - Putative aminomethyltransferase RMA_0790 69 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 157965038 Common - hypothetical protein RMA_1387 97 COG1981 COG1981, Predicted membrane protein Function unknown 157964172 Common virB6-2 VirB6 RMA_0147 6 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 157964366 Common virB11 VirB11 RMA_0401 152 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 157964841 Common - Putative oxidoreductase protein RMA_1102 74 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 157964482 Common mccF Microcin C7 self-immunity protein RMA_0566 81 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 157964838 Common - LPS biosynthesis protein RMA_1088 17 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 157964949 Common atpD ATP synthase beta chain RMA_1252 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 157965027 Common greA Transcription elongation factor GreA RMA_1374 204 COG0782 GreA, Transcription elongation factor Transcription 157964554 Common truB tRNA pseudouridine synthase B RMA_0671 244 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 157964341 Common petA Ubiquinol-cytochrome c reductase, iron-sulfur subunit RMA_0363 108 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 157964960 Common bolA2 BolA-like protein RMA_1269 33 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 157964874 Common surf1 Surfeit locus protein 1 RMA_1150 53 COG3346 COG3346, Uncharacterized conserved protein Function unknown 157964204 Common rplJ 50S ribosomal protein L10 RMA_0187 215 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 157965004 Common - hypothetical protein RMA_1344 1 COG4391 COG4391, Uncharacterized protein conserved in bacteria Function unknown 157964903 Common - hypothetical protein RMA_1195 1 None None None 157964690 Pathogen - hypothetical protein RMA_0863 1 None None None 157964634 Common rpmJ 50S ribosomal protein L36 RMA_0776 11 None None None 157964497 Common - hypothetical protein RMA_0593 12 None None None 157964552 Common pnp Polyribonucleotide nucleotidyltransferase RMA_0669 237 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 157964697 Common ubiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase RMA_0886 116 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 157964854 Common ompB Outer membrane protein rOmpB RMA_1118 94 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 157964281 Common cydB Cytochrome d ubiquinol oxidase subunit II RMA_0297 151 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 157964510 Common ompR PetR RMA_0608 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 157964215 Common dapB Dihydrodipicolinate reductase RMA_0198 216 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 157964848 Common bcr2 MFS-type bicyclomycin resistance protein RMA_1110 120 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 157964627 Common fni Isopentenyl-diphosphate delta-isomerase RMA_0766 81 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 157964146 Common sca2 Cell surface antigen Sca2 RMA_0119 3 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 157964126 Common abcT1 ABC transporter ATP-binding protein RMA_0095 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 157964397 Common - Transposase and inactivated derivative RMA_0449 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964869 Common rnhA Ribonuclease H RMA_1145 176 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 157964929 Common - hypothetical protein RMA_1230 13 COG3164 COG3164, Predicted membrane protein Function unknown 157964113 Common yidC Preprotein translocase subunit YidC RMA_0080 214 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 157964942 Common ccmA Heme exporter protein A RMA_1245 248 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 157965040 Common hemE Uroporphyrinogen decarboxylase RMA_1389 179 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 157964708 Common panF Sodium/pantothenate symporter RMA_0899 116 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 157964703 Common - hypothetical protein RMA_0892 2 None None None 157964147 Common cysS Cysteinyl-tRNA synthetase RMA_0120 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964405 Common - hypothetical protein RMA_0461 1 None None None 157964142 Common sam S-adenosylmethionine transporter RMA_0114 67 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 157964200 Common secE Preprotein translocase SecE subunit RMA_0183 2 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 157964430 Common xseB Exodeoxyribonuclease VII small subunit RMA_0491 104 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 157964187 Common - Putative nucleoside-diphosphate-sugar epimerase RMA_0170 22 COG3660 COG3660, Predicted nucleoside-diphosphate-sugar epimerase Cell envelope biogenesis, outer membrane 157964439 Common - hypothetical protein RMA_0506 15 COG4765 COG4765, Uncharacterized protein conserved in bacteria Function unknown 157964429 Common - hypothetical protein RMA_0490 6 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 157964259 Common dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase RMA_0257 143 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 157964250 Common dnaK DnaK RMA_0246 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 157964791 Common rplF 50S ribosomal protein L6 RMA_1025 243 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 157964602 Common traG Conjugative transfer protein TraG RMA_0731 23 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 157964870 Common - hypothetical protein RMA_1146 40 COG3814 COG3814, Uncharacterized protein conserved in bacteria Function unknown 157964345 Common - hypothetical protein RMA_0367 3 None None None 157964468 Common ampG4 AmpG RMA_0552 109 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 157964716 Common acpS Holo-[acyl carrier protein] synthase RMA_0914 151 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 157964306 Common - Regulatory components of sensory transduction system RMA_0328 216 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 157964831 Common - Poly-beta-hydroxyalkanoate depolymerase RMA_1076 44 COG4553 DepA, Poly-beta-hydroxyalkanoate depolymerase Lipid metabolism 157964725 Common secD Protein-export membrane protein secD RMA_0926 221 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 157964682 Common infB Translation initiation factor IF-2 RMA_0853 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 157964112 Common - hypothetical protein RMA_0079 66 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 157964227 Common omp1 Outer membrane protein omp1 RMA_0210 161 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 157964642 Common rnd Ribonuclease D RMA_0788 114 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 157964693 Common - hypothetical protein RMA_0870 1 None None None 157964465 Common ruvA Holliday junction DNA helicase RuvA RMA_0549 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 157964534 Common uvrD DNA helicase II RMA_0636 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 157964924 Common smpA tmRNA-binding protein RMA_1218 17 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 157964685 Common - hypothetical protein RMA_0856 1 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 157964986 Common - DAP2 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein RMA_1321 10 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 157964519 Common - hypothetical protein RMA_0619 6 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 157964422 Common - Glycosyltransferase RMA_0482 182 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 157964625 Common rpsA 30S ribosomal protein S1 RMA_0759 215 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 157964527 Common - Putative permease RMA_0629 23 COG0679 COG0679, Predicted permeases General function prediction only 157964287 Pathogen - hypothetical protein RMA_0303 1 None None None 157964234 Common - hypothetical protein RMA_0217 3 COG5508 COG5508, Uncharacterized conserved small protein Function unknown 157964301 Common rpsI 30S ribosomal protein S9 RMA_0322 219 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 157964280 Common cydA Cytochrome d ubiquinol oxidase subunit I RMA_0296 163 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 157964394 Common - hypothetical protein RMA_0441 2 None None None 157964981 Common omp 17 kDa surface antigen precursor RMA_1313 28 COG4520 LipA, Surface antigen Cell envelope biogenesis, outer membrane 157964614 Common - Transposase and inactivated derivative RMA_0748 46 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964222 Common pyrH Uridylate kinase RMA_0205 244 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 157964913 Common uup ABC transporter ATP-binding protein Uup RMA_1207 241 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 157964539 Common yhbH Putative sigma(54) modulation protein RMA_0643 99 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 157964911 Common acpP Acyl carrier protein RMA_1205 209 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 157964769 Common gltX2 Glutamyl-tRNA synthetase RMA_0992 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 157964796 Common rplN 50S ribosomal protein L14 RMA_1030 245 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 157964512 Common dapA Dihydrodipicolinate synthase RMA_0610 234 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 157964760 Common - hypothetical protein RMA_0979 22 COG5590 COG5590, Uncharacterized conserved protein Function unknown 157964506 Common - Septum formation initiator RMA_0604 24 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 157964361 Common virB8-1 VirB8 RMA_0396 3 COG3736 VirB8, Type IV secretory pathway, component VirB8 Intracellular trafficking and secretion 157964246 Common sucA 2-oxoglutarate dehydrogenase E1 component RMA_0239 151 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 157964491 Common murD UDP-N-acetylmuramoylalanine--D-glutamate ligase RMA_0577 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 157964275 Common n2B Putative ATPase n2B RMA_0289 100 COG1485 COG1485, Predicted ATPase General function prediction only 157964414 Common capD Putative nucleoside-diphosphate sugar epimerase CapD RMA_0474 162 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 157964320 Common ftsQ Cell division protein ftsQ RMA_0342 59 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 157964676 Common - N6-adenine-specific methylase RMA_0847 162 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 157964593 Common traB F pilus assembly protein TraB RMA_0720 25 None None None 157964081 Common - Putative P-loop hydrolase RMA_0017 191 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 157964823 Common xseA Exodeoxyribonuclease VII, large subunit RMA_1059 204 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 157964088 Common atpB ATP synthase A chain RMA_0028 207 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 157964753 Common - hypothetical protein RMA_0967 3 None None None 157964954 Common mrcA Penicillin-binding protein 1A RMA_1261 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 157964857 Common - Beta-glucosidase RMA_1121 171 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 157964557 Common hipB Putative transcriptional regulator RMA_0674 40 COG1396 HipB, Predicted transcriptional regulators Transcription 157964449 Common tme Malate oxidoreductase and phosphate acetyltransferase RMA_0527 208 COG0281 SfcA, Malic enzyme Energy production and conversion 157964440 Common xerD Tyrosine recombinase XerD RMA_0509 227 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 157964731 Common traX F pilin acetylation protein TraX RMA_0932 3 None None None 157964115 Common - hypothetical protein RMA_0082 9 None None None 157965016 Common dinJ DNA-damage-inducible protein J RMA_1362 36 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 157964771 Common - Transposase and inactivated derivative RMA_0994 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964529 Common trxB1 Thioredoxin reductase RMA_0631 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 157964780 Common rpsT 30S ribosomal protein S20 RMA_1014 148 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 157964776 Common rph Ribonuclease PH RMA_1006 183 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 157964816 Common ampG2 AmpG RMA_1052 103 None None None 157965022 Common - hypothetical protein RMA_1369 138 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 157964800 Common rpsC 30S ribosomal protein S3 RMA_1034 242 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 157964860 Common bcp Bacterioferritin comigratory protein RMA_1124 221 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 157964271 Common gyrA DNA gyrase subunit A RMA_0276 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 157964487 Common coxB Cytochrome c oxidase polypeptide II RMA_0572 153 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 157964964 Common dksA DnaK suppressor-like protein RMA_1285 155 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 157964882 Common - PemK-like growth inhibitor RMA_1170 2 None None None 157964144 Common - hypothetical protein RMA_0116 1 None None None 157964701 Common - hypothetical protein RMA_0890 1 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 157964747 Common rplY 50S ribosomal protein L25 RMA_0961 184 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 157964737 Common mraY1 Phospho-N-acetylmuramoyl-pentapeptide-transferase RMA_0942 213 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 157964167 Common - Hypothetical GTP-binding protein RMA_0142 185 COG0218 COG0218, Predicted GTPase General function prediction only 157964993 Common gltA Citrate synthase I RMA_1330 193 COG0372 GltA, Citrate synthase Energy production and conversion 157964399 Common - hypothetical protein RMA_0453 1 None None None 157964124 Common soj ATPase involved in chromosome partitioning RMA_0093 222 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 157964103 Common aco1 Acyl-CoA desaturase 1 RMA_0066 67 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 157964632 Common glmU UDP-N-acetylglucosamine pyrophosphorylase RMA_0774 214 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 157964364 Common virB9-2 VirB9 RMA_0399 39 COG3504 VirB9, Type IV secretory pathway, VirB9 components Intracellular trafficking and secretion 157964524 Common ppnK Putative inorganic polyphosphate/ATP-NAD kinase RMA_0626 216 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 157964699 Common ntrX Nitrogen assimilation regulatory protein NtrX RMA_0888 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 157964922 Common fabH 3-oxoacyl-[acyl carrier protein] synthase III RMA_1216 220 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 157964951 Common atpA ATP synthase alpha chain RMA_1254 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 157964574 Common - hypothetical protein RMA_0693 1 None None None 157964939 Common nuoK NADH dehydrogenase I chain K RMA_1242 163 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 157964292 Common - hypothetical protein RMA_0313 16 COG3827 COG3827, Uncharacterized protein conserved in bacteria Function unknown 157964176 Common rplS 50S ribosomal protein L19 RMA_0159 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 157964897 Common lysC Aspartokinase RMA_1188 233 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 157964836 Common ubiA 4-hydroxybenzoate octaprenyltransferase RMA_1084 159 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 157964217 Common yqiX Amino acid ABC transporter substrate binding protein RMA_0200 144 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 157964543 Common nrdA Ribonucleoside-diphosphate reductase alpha chain RMA_0653 221 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 157964206 Common rpoB DNA-directed RNA polymerase beta chain RMA_0189 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 157964972 Common map Methionine aminopeptidase type I RMA_1301 246 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 157964877 Common phbC Poly-beta-hydroxybutyrate polymerase RMA_1165 53 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 157964304 Pathogen - hypothetical protein RMA_0326 1 None None None 157964944 Common nuoH NADH dehydrogenase I chain H RMA_1247 187 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 157964233 Common - Oligoketide cyclase/lipid transport protein RMA_0216 101 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 157964754 Common - Transposase and inactivated derivative RMA_0970 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964991 Common tig Trigger factor RMA_1328 214 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 157964285 Common mpp Mitochondrial protease-like protein RMA_0301 199 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 157964525 Common - Putative hydrolase of the metallo-beta-lactamase superfamily RMA_0627 151 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 157964829 Common mutM Formamidopyrimidine-DNA glycosidase RMA_1070 181 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 157964505 Common rnd2 Ribonuclease D RMA_0603 79 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 157965012 Common dapE Succinyl-diaminopimelate desuccinylase RMA_1358 209 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 157964668 Common - hypothetical protein RMA_0835 1 None None None 157964847 Common - hypothetical protein RMA_1109 1 None None None 157964161 Common mkl Ribonucleotide ABC transporter ATP-binding protein RMA_0136 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 157964745 Common ychF GTP-binding protein YchF RMA_0958 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 157964630 Common - hypothetical protein RMA_0770 48 COG4804 COG4804, Uncharacterized conserved protein Function unknown 157964695 Common - Large extracellular alpha-helical protein RMA_0876 79 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 157964881 Common - Putative metal-dependent hydrolase RMA_1169 114 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 157964965 Common xerC Tyrosine recombinase XerC RMA_1286 224 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 157964210 Common - Chromosome partitioning protein-like protein RMA_0193 83 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 157964303 Common - Putative pterin-4-alpha-carbinolamine dehydratase RMA_0325 87 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 157964149 Common tsf Elongation factor EF-Ts RMA_0122 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 157964861 Common htrB Lipid-A biosynthesis lauroyl acyltransferase RMA_1125 98 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 157964493 Common murG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase RMA_0579 211 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 157964652 Common - hypothetical protein RMA_0809 1 None None None 157965031 Common truA tRNA pseudouridine synthase A RMA_1378 232 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 157964622 Common - hypothetical protein RMA_0756 2 None None None 157964219 Common gatA Glutamyl-tRNA amidotransferase subunit A RMA_0202 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 157964170 Common virB4-1 VirB4 RMA_0145 66 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 157964165 Common rpmB 50S ribosomal protein L28 RMA_0140 109 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 157964814 Common ftsZ Cell division protein ftsZ RMA_1048 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 157964446 Common dsbB Disulfide bond formation protein DsbB RMA_0524 4 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 157964110 Common - hypothetical protein RMA_0077 91 COG1565 COG1565, Uncharacterized conserved protein Function unknown 157964209 Common pepA Aminopeptidase A RMA_0192 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 157964335 Common hlpA Outer membrane protein RMA_0357 17 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 157964129 Common iscA1 Iron-sulfur cluster assembly accessory protein RMA_0101 164 COG0316 IscA, Uncharacterized conserved protein Function unknown 157964935 Common terC Tellurium resistance protein TerC RMA_1236 91 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 157964548 Common abcT2 ABC transporter ATP-binding protein RMA_0665 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 157964977 Common fdxA Ferredoxin RMA_1309 165 COG1146 COG1146, Ferredoxin Energy production and conversion 157964770 Common - hypothetical protein RMA_0993 1 COG5342 COG5342, Invasion protein B, involved in pathogenesis General function prediction only 157964586 Common - Integrase RMA_0713 153 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 157964864 Common ligA DNA ligase, NAD-dependent RMA_1131 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 157964639 Common - hypothetical protein RMA_0785 65 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 157964905 Common - NAD-specific glutamate dehydrogenase RMA_1197 77 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 157964734 Common scoA Succinyl-CoA:3-ketoacid-coenzyme A transferase RMA_0937 91 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 157964370 Common - hypothetical protein RMA_0407 2 None None None 157964331 Common xth1 Exodeoxyribonuclease III RMA_0353 194 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 157964226 Pathogen - hypothetical protein RMA_0209 1 None None None 157964779 Common - DnaA-like protein RMA_1009 59 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 157964326 Common - hypothetical protein RMA_0348 1 None None None 157964706 Common mraW S-adenosyl-methyltransferase MraW RMA_0895 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 157964087 Common atpE ATP synthase C chain RMA_0027 63 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 157964789 Common rpsE 30S ribosomal protein S5 RMA_1023 244 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 157964192 Common - Putative sulfurtransferase RMA_0175 111 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 157964338 Common mnhB Multisubunit Na+/H+ antiporter, MnhB subunit RMA_0360 46 COG1563 COG1563, Predicted subunit of the Multisubunit Na+/H+ antiporter Inorganic ion transport and metabolism 157964197 Common rpsL 30S ribosomal protein S12 RMA_0180 239 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 157964488 Common nlpD2 Membrane-bound metallopeptidase RMA_0574 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 157964992 Common obg GTP-binding protein RMA_1329 249 COG0536 Obg, Predicted GTPase General function prediction only 157964168 Common argB Acetylglutamate kinase RMA_0143 169 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 157964858 Pathogen - hypothetical protein RMA_1122 1 COG0789 SoxR, Predicted transcriptional regulators Transcription 157965008 Common ampD2 Negative regulator of beta-lactamase expression RMA_1348 107 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 157964562 Common - Antitoxin of toxin-antitoxin RMA_0679 3 COG4118 Phd, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 157964558 Common rbn Putative ribonuclease BN RMA_0675 130 COG1295 Rbn, Predicted membrane protein Function unknown 157964315 Common bolA1 BolA-like protein RMA_0337 57 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 157964073 Common - hypothetical protein RMA_0001 112 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 157965021 Common - Putative aspartyl protease RMA_1368 44 COG3577 COG3577, Predicted aspartyl protease General function prediction only 157964520 Common rbfA Ribosome-binding factor A RMA_0620 48 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 157964258 Common - hypothetical protein RMA_0256 9 None None None 157964957 Common - hypothetical protein RMA_1266 43 COG3807 COG3807, Uncharacterized protein conserved in bacteria Function unknown 157964158 Common prs Ribose-phosphate pyrophosphokinase RMA_0133 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 157964767 Common znuB Zinc/manganese ABC transporter permease protein RMA_0990 167 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 157964494 Common - hypothetical protein RMA_0580 1 None None None 157964925 Common ftsY Signal recognition particle-docking protein FtsY RMA_1219 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 157964742 Common pspE Rhodanese-related sulfurtransferase RMA_0947 41 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 157964503 Common - hypothetical protein RMA_0601 17 None None None 157964616 Common - Transposase and inactivated derivative RMA_0750 29 None None None 157964499 Common - MiaB-like tRNA modifying enzyme RMA_0597 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 157964273 Common def1 Polypeptide deformylase RMA_0279 213 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 157964245 Common sucB Dihydrolipoamide acetyltransferase component RMA_0238 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 157964438 Common rfaL Putative lipid A core - O-antigen ligase RMA_0505 2 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 157964578 Common infC Translation initiation factor IF-3 RMA_0701 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 157964985 Common ssb Single-stranded DNA-binding protein RMA_1320 198 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 157964091 Common - Transcriptional regulator RMA_0031 83 COG1329 COG1329, Transcriptional regulators, similar to M. xanthus CarD Transcription 157964974 Common - hypothetical protein RMA_1306 1 None None None 157964514 Common dsbA Thiol:disulfide interchange protein dsbA RMA_0612 87 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 157964674 Common rluA2 Ribosomal large subunit pseudouridine synthase RMA_0845 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 157964384 Common - hypothetical protein RMA_0429 1 None None None 157964643 Common - hypothetical protein RMA_0789 16 COG1723 COG1723, Uncharacterized conserved protein Function unknown 157964609 Common - Transposase and inactivated derivative RMA_0740 116 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 157964105 Common rpsR 30S ribosomal protein S18 RMA_0069 207 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 157964522 Common - RDD family protein RMA_0622 23 COG1714 COG1714, Predicted membrane protein/domain Function unknown 157964817 Common rhlE ATP-dependent RNA helicase RhlE RMA_1053 242 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 157964262 Common imp TRAP-type uncharacterized transport system, periplasmic component RMA_0267 73 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 157964329 Common rluA1 Ribosomal large subunit pseudouridine synthase RMA_0351 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 157964220 Common gatC Glutamyl-tRNA amidotransferase subunit C RMA_0203 106 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 157964890 Common - hypothetical protein RMA_1181 12 None None None 157964797 Common rpsQ 30S ribosomal protein S17 RMA_1031 232 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 157964101 Pathogen - hypothetical protein RMA_0064 1 None None None 157964713 Common - hypothetical protein RMA_0908 5 None None None 157964462 Common proS Prolyl-tRNA synthetase RMA_0546 248 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964722 Common proP9 Proline/betaine transporter RMA_0921 1 None None None 157964680 Common - Putative glycoprotein endopeptidase RMA_0851 146 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 157964681 Pathogen - hypothetical protein RMA_0852 1 None None None 157964663 Common iscS Cysteine desulfurase IscS RMA_0823 240 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 157964137 Common czcR Transcriptional activator protein CzcR RMA_0109 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 157964657 Common - hypothetical protein RMA_0817 2 None None None 157964588 Common - Putative toxin of toxin-antitoxin RMA_0715 52 COG4115 COG4115, Uncharacterized protein conserved in bacteria Function unknown 157964318 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase RMA_0340 201 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 157964879 Common - (Di)nucleoside polyphosphate hydrolase-like protein RMA_1167 22 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 157964803 Common rplB 50S ribosomal protein L2 RMA_1037 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 157965019 Common glnQ Glutamine ABC transporter ATP-binding protein RMA_1365 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 157964401 Common cyaY CyaY RMA_0455 30 COG1965 CyaY, Protein implicated in iron transport, frataxin homolog Inorganic ion transport and metabolism 157964599 Common traN Conjugative transfer protein TraN RMA_0728 25 None None None 157964456 Common tlc2 ATP/ADP translocase RMA_0540 6 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 157964094 Common - hypothetical protein RMA_0043 2 None None None 157964894 Common pgpA Phosphatidylglycerophosphatase A RMA_1185 93 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 157964914 Common - hypothetical protein RMA_1208 4 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 157964404 Common - Transposase and inactivated derivative RMA_0459 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964666 Common - hypothetical protein RMA_0829 2 None None None 157964235 Common - hypothetical protein RMA_0218 195 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 157964729 Common ppa Inorganic pyrophosphatase RMA_0930 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 157964163 Pathogen - hypothetical protein RMA_0138 1 None None None 157964096 Common - Putative transcriptional regulator RMA_0049 124 COG1678 COG1678, Putative transcriptional regulator Transcription 157964863 Common - Periplasmic protein RMA_1127 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 157964637 Common - hypothetical protein RMA_0780 1 None None None 157964313 Common - hypothetical protein RMA_0335 9 None None None 157964812 Common - Antitoxin of toxin-antitoxin RMA_1046 3 COG4118 Phd, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 157964174 Common virB6-4 VirB6 RMA_0149 21 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 157964826 Common - GTP-binding protein RMA_1064 231 COG1160 COG1160, Predicted GTPases General function prediction only 157964444 Common cutE Apolipoprotein N-acyltransferase RMA_0513 166 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 157964238 Common hupA DNA-binding protein HU RMA_0221 199 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 157964704 Common pbpA2 Penicillin-binding protein RMA_0893 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 157964649 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase RMA_0804 157 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 157964333 Common pdhB Pyruvate dehydrogenase E1 component, beta subunit precursor RMA_0355 217 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 157964940 Common nuoL1 NADH dehydrogenase I chain L RMA_1243 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 157964382 Common atrC1 Cationic amino acid transporter-1 RMA_0421 190 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 157964541 Common trxB2 Thioredoxin reductase RMA_0647 238 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 157964127 Common - hypothetical protein RMA_0096 1 None None None 157964866 Pathogen - hypothetical protein RMA_1139 1 None None None 157964085 Common atpF ATP synthase B chain RMA_0025 3 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 157964212 Common aspS Aspartyl-tRNA synthetase RMA_0195 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157964640 Common lpdA2 Dihydrolipoamide dehydrogenase RMA_0786 247 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 157964231 Common - hypothetical protein RMA_0214 2 None None None 157964202 Common rplK 50S ribosomal protein L11 RMA_0185 241 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 157964151 Common - hypothetical protein RMA_0126 45 COG2121 COG2121, Uncharacterized protein conserved in bacteria Function unknown 157964556 Common sca4 Cell surface antigen Sca4 RMA_0673 13 None None None 157964930 Common ampG3 AmpG RMA_1231 107 None None None 157964845 Common - HicB-like protein RMA_1107 16 COG4226 HicB, Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters Function unknown 157964536 Common tdcB Threonine dehydratase RMA_0638 211 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 157964117 Common - Tellurite resistance protein-related protein RMA_0084 40 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 157965010 Common - hypothetical protein RMA_1350 8 COG1434 COG1434, Uncharacterized conserved protein Function unknown 157964671 Common priA Primosomal protein N' RMA_0838 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 157964597 Common traU Conjugal DNA transfer protein TraU RMA_0726 26 None None None 157964516 Common sucC Succinyl-CoA synthetase beta chain RMA_0614 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 157964424 Common rpsD 30S ribosomal protein S4 RMA_0484 222 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 157964452 Common proP3 Proline/betaine transporter RMA_0532 112 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 157964946 Common - hypothetical protein RMA_1249 21 COG3671 COG3671, Predicted membrane protein Function unknown 157965037 Common hemF Coproporphyrinogen III oxidase precursor RMA_1385 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 157964654 Common lysE Lysine efflux permease RMA_0811 81 COG1279 COG1279, Lysine efflux permease General function prediction only 157965005 Common mutL DNA mismatch repair protein MutL RMA_1345 192 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 157964569 Common folC Folylpolyglutamate synthase RMA_0687 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 157965006 Common rpmG 50S ribosomal protein L33 RMA_1346 124 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 157964355 Common vapC1 Toxin of toxin-antitoxin (TA) system VapC RMA_0390 9 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 157964396 Common hslU Heat shock protein HslVU, ATPase subunit HslU RMA_0443 211 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 157964963 Common maf Nucleotide-binding protein implicated in inhibition of septum formation RMA_1284 180 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 157964756 Common - Transposase and inactivated derivative RMA_0972 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964916 Common gmk Guanylate kinase RMA_1210 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 157964256 Common coxC Cytochrome c oxidase subunit III RMA_0254 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 157964411 Common - Putative endonuclease involved in recombination RMA_0471 190 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 157964959 Common - Iojap-related protein RMA_1268 197 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 157964358 Common nuoN2 NADH:ubiquinone oxidoreductase subunit 2 (chain N) RMA_0393 164 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 157964758 Common ntrY Nitrogen regulation protein NtrY RMA_0977 221 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 157964470 Common rlpA Rare lipoprotein A precursor RMA_0554 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 157964888 Pathogen - hypothetical protein RMA_1177 1 None None None 157964279 Common - hypothetical protein RMA_0295 1 None None None 157964373 Common mutS DNA mismatch repair protein MutS RMA_0410 201 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 157964772 Common spoT14 Guanosine polyphosphate pyrophosphohydrolase/synthetase RMA_0995 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 157964324 Common - hypothetical protein RMA_0346 1 None None None 157964416 Common - hypothetical protein RMA_0476 2 None None None 157964787 Common rplO 50S ribosomal protein L15 RMA_1021 90 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 157964298 Common - hypothetical protein RMA_0319 2 None None None 157964368 Common gppA Guanosine pentaphosphate phosphohydrolase RMA_0403 104 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 157964199 Common fusA Elongation factor EF-G RMA_0182 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 157964804 Common rplW 50S ribosomal protein L23 RMA_1038 114 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 157964295 Common ctp Carboxyl-terminal protease RMA_0316 183 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 157964228 Common - Putative membrane-associated zinc metalloprotease RMA_0211 209 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 157964336 Common icd Isocitrate dehydrogenase, NADP-dependent RMA_0358 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 157964834 Common tmk1 Thymidylate kinase RMA_1082 225 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 157964454 Common - Transposase and inactivated derivative RMA_0537 75 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964702 Common pbpA1 Penicillin-binding protein RMA_0891 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 157964629 Common - Acetyltransferase GNAT family protein RMA_0769 13 COG0456 RimI, Acetyltransferases General function prediction only 157964243 Common cutA Periplasmic divalent cation tolerance protein RMA_0236 111 COG1324 CutA, Uncharacterized protein involved in tolerance to divalent cations Inorganic ion transport and metabolism 157964611 Common - Transposase and inactivated derivative RMA_0745 18 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964607 Common - Transposase and inactivated derivative RMA_0736 74 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964107 Common tilS tRNA(Ile)-lysidine synthetase RMA_0071 207 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 157964501 Common pheT Phenylalanyl-tRNA synthetase beta chain RMA_0599 234 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 157964795 Common rplX 50S ribosomal protein L24 RMA_1029 205 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 157964435 Common nuoC NADH dehydrogenase I chain C RMA_0502 167 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 157964284 Common lgtF Beta 1,4 glucosyltransferase RMA_0300 112 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 157964749 Common rpmI 50S ribosomal protein L35 RMA_0963 105 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 157964612 Common - Transposase and inactivated derivative RMA_0746 146 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964765 Common aas 2-acylglycerophosphoethanolamine acyltransferase RMA_0988 226 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 157964983 Common znuC Zinc ABC transporter ATP-binding protein RMA_1315 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 157964661 Common iscA2 Iron-sulfur cluster assembly accessory protein RMA_0821 165 COG0316 IscA, Uncharacterized conserved protein Function unknown 157964887 Common nth Endonuclease III RMA_1175 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 157964075 Common rfbE O-antigen export system ATP-binding protein RfbE RMA_0003 240 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 157964348 Common prfB Peptide chain release factor RF-2 RMA_0372 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 157964254 Common holA DNA polymerase III, delta subunit RMA_0252 27 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 157964403 Common - hypothetical protein RMA_0457 1 None None None 157964265 Common hscA Heat shock protein hscA RMA_0270 234 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 157964678 Common - hypothetical protein RMA_0849 2 None None None 157964852 Common - Hemolysin-like protein RMA_1114 218 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 157964308 Common suhB Extragenic suppressor protein suhB RMA_0330 122 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 157964185 Common - Nucleotidyltransferase substrate binding protein RMA_0168 31 None None None 157964559 Common glnA Glutamine synthetase RMA_0676 212 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 157964600 Common traF F pilus assembly protein TraF RMA_0729 21 None None None 157964386 Common tolR TolR RMA_0433 140 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 157964316 Common - EAL domain containing protein RMA_0338 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 157964476 Common - Protocatechuate-3,4-dioxygenase, beta subunit RMA_0560 32 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 157964620 Common - Signal transduction histidine kinase RMA_0754 207 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 157964406 Common gltX1 Glutamyl-tRNA synthetase RMA_0462 248 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 157964740 Common mfd Transcription-repair coupling factor RMA_0945 216 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 157964323 Common cycM Cytochrome c RMA_0345 56 COG3474 COG3474, Cytochrome c2 Energy production and conversion 157964927 Common dnaE DNA polymerase III alpha chain RMA_1228 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 157964718 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase RMA_0916 208 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 157964135 Common dcd Deoxycytidine triphosphate deaminase RMA_0107 149 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 157964720 Common - HAD-superfamily subfamily IIA hydrolase RMA_0918 55 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 157964920 Common - Putative permease RMA_1214 50 COG0795 COG0795, Predicted permeases General function prediction only 157964264 Common fdxB Ferredoxin RMA_0269 100 COG0633 Fdx, Ferredoxin Energy production and conversion 157964998 Common - Sua5/YciO/YrdC/YwlC family putative translation factor protein RMA_1335 225 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 157964711 Common - hypothetical protein RMA_0902 43 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 157964592 Common - hypothetical protein RMA_0719 2 None None None 157964968 Common surA Parvulin-like peptidyl-prolyl isomerase RMA_1295 97 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 157964892 Common - ABC-type transport systems periplasmic component RMA_1183 18 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 157964460 Common - hypothetical protein RMA_0544 8 None None None 157964093 Common recF DNA replication and repair protein RecF RMA_0033 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 157964801 Common rplV 50S ribosomal protein L22 RMA_1035 219 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 157964134 Common - hypothetical protein RMA_0106 6 None None None 157964321 Common ftsA Cell division protein ftsA RMA_0343 176 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 157964484 Pathogen - hypothetical protein RMA_0568 1 None None None 157964659 Common pepP Aminopeptidase P RMA_0819 218 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 157964375 Common nlpD1 Membrane-bound metallopeptidase RMA_0412 27 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 157964768 Common ubiG Ubiquinone biosynthesis O-methyltransferase RMA_0991 149 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 157965025 Common pntA1 NAD(P) transhydrogenase subunit alpha RMA_1372 166 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 157964194 Common sdhD Succinate dehydrogenase hydrophobic membrane anchor protein RMA_0177 18 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 157964886 Common grxC2 Glutaredoxin-like protein grla RMA_1174 127 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 157964538 Pathogen - hypothetical protein RMA_0642 1 None None None 157964785 Common adk Adenylate kinase RMA_1019 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 157964277 Pathogen - hypothetical protein RMA_0293 1 None None None 157964710 Common uvrC Excinuclease ABC subunit C RMA_0901 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 157964377 Common tolB TolB protein precursor RMA_0416 154 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 157964434 Common nuoD NADH dehydrogenase I chain D RMA_0501 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 157964311 Common pssA CDP-diacylglycerol--serine O-phosphatidyltransferase RMA_0333 138 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 157964387 Common - Periplasmic protein TonB RMA_0434 10 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 157964819 Pathogen - hypothetical protein RMA_1055 1 None None None 157964475 Common - hypothetical protein RMA_0559 2 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 157964568 Common bioY2 BioY family protein RMA_0686 94 COG1268 BioY, Uncharacterized conserved protein General function prediction only 157964850 Common lolD Lipoprotein releasing system ATP-binding protein LolD RMA_1112 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 157964523 Common recR Recombination protein RecR RMA_0623 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 157964953 Common lpdA1 Dihydrolipoamide dehydrogenase RMA_1256 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 157964919 Common mreB Rod shape-determining protein MreB RMA_1213 234 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 157964563 Common addA Erythrocyte adducin alpha subunit RMA_0681 115 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 157964253 Common - hypothetical protein RMA_0251 2 None None None 157964808 Common tuf Elongation factor EF-Tu RMA_1042 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 157964249 Common dnaJ DnaJ RMA_0245 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 157964413 Common - dTDP-4-dehydrorhamnose reductase RMA_0473 133 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 157964589 Common - hypothetical protein RMA_0716 2 None None None 157965017 Common - hypothetical protein RMA_1363 5 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 157964276 Pathogen - Ankyrin repeat RMA_0292 1 None None None 157964443 Common fabI Enoyl-[acyl carrier protein] reductase RMA_0512 222 COG0623 FabI, Enoyl- acyl-carrier-protein 157964082 Common znuA Zinc/manganese ABC transporter substrate binding protein RMA_0018 36 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 157964089 Common - hypothetical protein RMA_0029 2 COG5336 COG5336, Uncharacterized protein conserved in bacteria Function unknown 157964356 Common vapB1 Antitoxin of toxin-antitoxin (TA) system VapB RMA_0391 1 None None None 157964109 Common sdhB Succinate dehydrogenase iron-sulfur protein RMA_0075 193 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 157964849 Common - Lipoprotein releasing system, transmembrane protein, LolC/E family protein RMA_1111 183 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 157964873 Common dnaQ DNA polymerase III epsilon chain RMA_1149 190 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 157964153 Common - hypothetical protein RMA_0128 52 COG4115 COG4115, Uncharacterized protein conserved in bacteria Function unknown 157964902 Common - hypothetical protein RMA_1194 2 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 157964948 Common atpC ATP synthase epsilon chain RMA_1251 75 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 157964205 Common rplL 50S ribosomal protein L7/L12 RMA_0188 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 157964900 Common proP5 Proline/betaine transporter RMA_1192 125 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 157964553 Common rpsO 30S ribosomal protein S15 RMA_0670 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 157964969 Common ompA Outer memberane protein rOmpA RMA_1296 149 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 157964973 Common mraY2 Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase RMA_1305 173 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 157964291 Common tolC Type I secretion outer membrane protein TolC RMA_0312 111 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 157964573 Common - hypothetical protein RMA_0691 1 None None None 157964909 Common recA RecA RMA_1203 224 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 157964936 Common - hypothetical protein RMA_1237 2 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 157964842 Common clpX ATP-dependent clp protease ATP-binding subunit ClpX RMA_1104 231 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 157964214 Common - Integral membrane protein, interacts with FtsH RMA_0197 130 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 157964145 Common secG Protein-export membrane protein secG RMA_0117 1 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 157964125 Common - ParB-like partition protein RMA_0094 187 COG1475 Spo0J, Predicted transcriptional regulators Transcription 157964868 Common - NADH:ubiquinone oxidoreductase 17.2 kDa subunit RMA_1144 34 COG3761 COG3761, NADH:ubiquinone oxidoreductase 17.2 kD subunit Energy production and conversion 157964581 Common recJ Single-stranded-DNA-specific exonuclease RecJ RMA_0704 194 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 157964114 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RMA_0081 205 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 157964605 Common - Transposase and inactivated derivative RMA_0734 33 COG5464 COG5464, Uncharacterized conserved protein Function unknown 157964289 Common - ABC transporter ATP-binding domain RMA_0307 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 157964790 Common rplR 50S ribosomal protein L18 RMA_1024 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 157964544 Common nrdB Ribonucleoside-diphosphate reductase beta chain RMA_0657 159 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 157964496 Common - Glycosyltransferase RMA_0592 225 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 157965003 Common - hypothetical protein RMA_1340 67 COG1636 COG1636, Uncharacterized protein conserved in bacteria Function unknown 157964431 Common mpg DNA-3-methyladenine glycosidase RMA_0496 83 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 157964518 Common - Acylamino-acid-releasing enzyme RMA_0618 122 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 157964698 Common - Multisubunit Na+/H+ antiporter, MnhF subunit RMA_0887 2 COG2212 MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit Inorganic ion transport and metabolism 157964367 Common virD4 VirD4 RMA_0402 73 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 157964799 Common rplP 50S ribosomal protein L16 RMA_1033 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 157965039 Common hemH Putative ferrochelatase RMA_1388 176 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 157964551 Common kpsF KpsF RMA_0668 164 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 157964635 Common - hypothetical protein RMA_0778 1 None None None 157964481 Common - hypothetical protein RMA_0565 1 None None None 157964132 Common - hypothetical protein RMA_0104 2 None None None 157964469 Common dacF Penicillin-binding protein dacF precursor RMA_0553 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 157964282 Common - Antitoxin of toxin-antitoxin (TA) system StbD RMA_0298 16 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 157964251 Common - Heat shock protease RMA_0247 200 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 157964098 Common - hypothetical protein RMA_0056 2 None None None 157964296 Common barA Histidine kinase sensor protein RMA_0317 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 157964473 Common - FTR1 family protein RMA_0557 33 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 157964466 Common ruvB Holliday junction DNA helicase RuvB RMA_0550 238 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 157964342 Common petB Cytochrome b RMA_0364 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 157964717 Common rpoZ DNA-directed RNA polymerase omega chain RMA_0915 61 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 157964346 Common hspC1 Small heat shock protein RMA_0368 52 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 157964726 Common - Sco2 protein precursor RMA_0927 109 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 157965028 Common sec59 Dolichol kinase RMA_1375 8 COG0170 SEC59, Dolichol kinase Lipid metabolism 157964391 Common aprD Alkaline protease secretion ATP-binding protein AprD RMA_0438 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 157964827 Common ubiB 2-polyprenylphenol 6-hydroxylase RMA_1068 184 COG0661 AarF, Predicted unusual protein kinase General function prediction only 157964239 Common holB DNA polymerase III delta subunit RMA_0222 39 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 157964352 Common rodA Rod shape-determining protein rodA RMA_0387 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 157964792 Common rpsH 30S ribosomal protein S8 RMA_1026 230 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 157964402 Common - hypothetical protein RMA_0456 1 None None None 157964155 Common - hypothetical protein RMA_0130 8 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 157964691 Common - hypothetical protein RMA_0864 1 None None None 157964398 Common lpxB Lipid-A-disaccharide synthase RMA_0452 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 157964409 Common hflC1 Membrane protease subunit, stomatin/prohibitin-like protein RMA_0469 216 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 157964183 Common ruvC Crossover junction endodeoxyribonuclease RuvC RMA_0166 198 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 157964839 Common - LPS biosynthesis protein RMA_1089 19 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 157964980 Common - Cation diffusion facilitator family transporter RMA_1312 189 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 157964898 Common - hypothetical protein RMA_1189 1 None None None 157964807 Common rpsJ 30S ribosomal protein S10 RMA_1041 231 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 157965034 Common - hypothetical protein RMA_1381 1 None None None 157964122 Common gidA Glucose-inhibited division protein A RMA_0091 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 157964989 Common htpG Heat shock protein htpG RMA_1325 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 157964507 Common cdsA Phosphatidate cytidylyltransferase RMA_0605 212 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 157964750 Common rplT 50S ribosomal protein L20 RMA_0964 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 157964490 Common - hypothetical protein RMA_0576 1 None None None 157964598 Common trbC Conjugative transfer protein TrbC RMA_0727 21 None None None 157964389 Common proP2 Proline/betaine transporter RMA_0436 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 157964500 Common pheS Phenylalanyl-tRNA synthetase alpha chain RMA_0598 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 157964459 Common mutT ADP-ribose pyrophosphatase MutT RMA_0543 20 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 157964979 Common - Cytosine deaminase RMA_1311 207 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 157964084 Common sca1 Cell surface antigen Sca1 RMA_0020 4 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 157964421 Common - Putative hydrolase/acyltransferase RMA_0481 79 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 157964426 Common - hypothetical protein RMA_0487 11 None None None 157964970 Common - Ankyrin repeat RMA_1297 28 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 157964267 Common rnhB Ribonuclease HII RMA_0272 233 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 157964180 Common lepB Signal peptidase I RMA_0163 200 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 157964225 Common - hypothetical protein RMA_0208 1 None None None 157964917 Common - hypothetical protein RMA_1211 1 None None None 157964362 Common - hypothetical protein RMA_0397 1 None None None 157964241 Common hemN Putative oxygen-independent coproporphyrinogen III oxidase RMA_0231 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 157964813 Common - Toxin of toxin-antitoxin RMA_1047 8 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 157964201 Common nusG Transcription antitermination protein NusG RMA_0184 216 COG0250 NusG, Transcription antiterminator Transcription 157964955 Common miaB tRNA-i(6)A37 thiotransferase enzyme MiaB RMA_1262 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 157964856 Common - Transposase and inactivated derivative RMA_1120 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964521 Common - hypothetical protein RMA_0621 5 COG1238 COG1238, Predicted membrane protein Function unknown 157964561 Common def2 Polypeptide deformylase RMA_0678 213 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 157964139 Common - hypothetical protein RMA_0111 41 COG3820 COG3820, Uncharacterized protein conserved in bacteria Function unknown 157964650 Common - AtsE-like protein RMA_0805 2 COG5622 COG5622, Protein required for attachment to host cells Cell motility and secretion 157964457 Common pyrG CTP synthase RMA_0541 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 157964207 Common rpoC DNA-directed RNA polymerase beta prime chain RMA_0190 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 157964415 Common rffE UDP-N-acetylglucosamine 2-epimerase RMA_0475 155 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 157964594 Common traV Conjugative transfer protein TraV RMA_0721 1 None None None 157964080 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase RMA_0008 153 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 157964820 Common ksgA Dimethyladenosine transferase RMA_1056 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 157964933 Common virB4-2 VirB4 RMA_1234 44 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 157964566 Common - Glutathione S-transferase RMA_0684 64 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 157964513 Common smpB tmRNA-binding protein RMA_0611 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 157964777 Common grpE GrpE protein RMA_1007 227 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 157964441 Common - hypothetical protein RMA_0510 1 None None None 157964752 Common rnpA Ribonuclease P RMA_0966 1 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 157964884 Common glyA Glycine/serine hydroxymethyltransferase RMA_1172 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 157965023 Common dnaX DNA polymerase III gamma and tau chains RMA_1370 247 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 157964328 Common coxW Cytochrome c oxidase assembly protein RMA_0350 49 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 157964736 Common rickA Actin polymerization protein RickA RMA_0941 25 COG5022 COG5022, Myosin heavy chain Cytoskeleton 157964486 Common coxA Cytochrome c oxidase polypeptide I RMA_0570 169 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 157964766 Pathogen tfoX Regulator of competence-specific genes TfoX RMA_0989 1 COG3070 TfoX, Regulator of competence-specific genes Transcription 157964961 Common - Transposase and inactivated derivative RMA_1270 11 None None None 157964875 Common - ATP-dependent helicase RMA_1151 228 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 157964272 Common - hypothetical protein RMA_0278 2 None None None 157964615 Common - Transposase and inactivated derivative RMA_0749 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 157964730 Common mviN Integral membrane protein MviN RMA_0931 193 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 157964418 Common - Glycosyltransferase, two domains RMA_0478 206 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 157964143 Common proP1 Proline/betaine transporter RMA_0115 135 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 157964116 Common - hypothetical protein RMA_0083 2 None None None 157964191 Common htrA Periplasmic serine protease RMA_0174 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 157964100 Common clpB ClpB RMA_0063 220 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 157964739 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase RMA_0944 212 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 157964783 Common rpsK 30S ribosomal protein S11 RMA_1017 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 157964633 Common - hypothetical protein RMA_0775 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 157964379 Common cox11 Cytochrome c oxidase assembly protein cox11 RMA_0418 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 157964196 Common yqiY Amino acid ABC transporter permease protein RMA_0179 175 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 157964788 Common rpmD 50S ribosomal protein L30 RMA_1022 94 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 157964221 Common rrf Ribosome recycling factor RMA_0204 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 157964123 Common gidB Putative S-adenosylmethionine-dependent methyltransferase GidB RMA_0092 129 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 157964546 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase RMA_0663 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 157964830 Common - Transposase and inactivated derivative RMA_1074 79 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 157964994 Common - Transcriptional regulator RMA_1331 2 COG3636 COG3636, Predicted transcriptional regulator Transcription 157964669 Common hemB Delta-aminolevulinic acid dehydratase RMA_0836 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 157964104 Common rpsF 30S ribosomal protein S6 RMA_0068 195 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 157964178 Common secF Protein-export membrane protein secF RMA_0161 216 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 157964365 Common virB10 VirB10 RMA_0400 58 COG2948 VirB10, Type IV secretory pathway, VirB10 components Intracellular trafficking and secretion 157964923 Common rpmF 50S ribosomal protein L32 RMA_1217 91 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 157964433 Common nuoE NADH dehydrogenase I chain E RMA_0499 156 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 157964645 Pathogen - Ankyrin repeat RMA_0791 1 None None None 157964448 Common - Putative permease RMA_0526 85 COG0679 COG0679, Predicted permeases General function prediction only 157964171 Common virB6-1 VirB6 RMA_0146 7 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 157964583 Common rho Transcription termination factor RMA_0706 206 COG1158 Rho, Transcription termination factor Transcription 157964855 Common spoT11 Guanosine polyphosphate pyrophosphohydrolase/synthetase RMA_1119 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 157964746 Common pth Peptidyl-tRNA hydrolase RMA_0960 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 157964943 Common nuoI NADH dehydrogenase I chain I RMA_1246 194 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 157964837 Common valS Valyl-tRNA synthetase RMA_1087 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 157965015 Common - hypothetical protein RMA_1361 14 COG3041 COG3041, Uncharacterized protein conserved in bacteria Function unknown 157964709 Pathogen - hypothetical protein RMA_0900 1 None None None 157964675 Common - hypothetical protein RMA_0846 55 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 157964975 Common - hypothetical protein RMA_1307 5 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 157964700 Common - hypothetical protein RMA_0889 76 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 157964216 Common - Flavoprotein oxygenase DIM6/NTAB family protein RMA_0199 126 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 157965018 Common phnP Metal-dependent hydrolases of the beta-lactamase superfamily I RMA_1364 92 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 157964967 Common ubiD UbiD family decarboxylase RMA_1294 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 157964159 Common alr Alanine racemase RMA_0134 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 157964175 Common trmD tRNA (guanine-n1)-methyltransferase RMA_0158 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 157964571 Common rssA Putative esterase of the alpha/beta hydrolase superfamily protein RMA_0689 51 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 157964883 Common lipA Lipoic acid synthetase RMA_1171 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 157964840 Common - RmuC family protein RMA_1093 95 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 157964393 Common pkcI Protein kinase C inhibitor 1 RMA_0440 187 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 157964351 Common - hypothetical protein RMA_0382 1 None None None 157964078 Common lpxA Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase RMA_0006 159 COG1043 LpxA, Acyl- acyl carrier protein 157964188 Common mrp Mrp RMA_0171 235 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 157964576 Common - hypothetical protein RMA_0699 1 None None None 157964938 Common nuoJ NADH dehydrogenase I chain J RMA_1241 157 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 157964603 Common - Tetratricopeptide repeat-containing protein RMA_0732 160 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 157964141 Common ompW OmpW family outer-membrane protein RMA_0113 7 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 157965000 Common glyQ Glycyl-tRNA synthetase alpha chain RMA_1337 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 157964896 Common rpmA 50S ribosomal protein L27 RMA_1187 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 157964950 Common atpG ATP synthase gamma chain RMA_1253 207 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 157964531 Common gabD Succinate semialdehyde dehydrogenase RMA_0633 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 157964260 Common pbpC Bifunctional penicillin-binding protein 1C RMA_0260 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 157964763 Common pccB Propionyl-CoA carboxylase beta chain precursor RMA_0986 217 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 157964483 Common - RecB family exonuclease RMA_0567 50 COG2887 COG2887, RecB family exonuclease DNA replication, recombination, and repair 157964686 Common tlyA Hemolysin A RMA_0859 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 157964744 Common pat1 Patatin-like phospholipase RMA_0952 16 COG3621 COG3621, Patatin General function prediction only 157964344 Common fbcH Cytochrome c1, heme protein precursor RMA_0366 77 COG2857 CYT1, Cytochrome c1 Energy production and conversion 157964683 Common nusA N utilization substance protein A, transcription termination factor NusA RMA_0854 216 COG0195 NusA, Transcription elongation factor Transcription 157964492 Common ftsW Cell division protein ftsW RMA_0578 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 157964876 Common fabD Malonyl CoA-acyl carrier protein transacylase RMA_1152 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 157964907 Common - hypothetical protein RMA_1199 1 None None None 157964300 Common rplM 50S ribosomal protein L13 RMA_0321 215 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 157964715 Common prsA Protein export protein prsA precursor RMA_0913 160 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 157965026 Common pntA2 NAD(P) transhydrogenase subunit alpha RMA_1373 117 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 157964340 Common - hypothetical protein RMA_0362 1 None None None 157964596 Common - Archaeal ATPase family protein RMA_0723 30 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 157964724 Common yajC Preprotein translocase YajC subunit RMA_0925 170 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 157964653 Common - hypothetical protein RMA_0810 3 None None None 157964182 Common era GTP-binding protein Era RMA_0165 236 COG1159 Era, GTPase General function prediction only 157964910 Common fabG 3-oxoacyl reductase RMA_1204 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 157964436 Common nuoB NADH dehydrogenase I chain B RMA_0503 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 157964223 Common mnhE Multisubunit Na+/H+ antiporter, MnhE subunit RMA_0206 23 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 157964450 Common - hypothetical protein RMA_0530 9 COG4374 COG4374, Uncharacterized protein conserved in bacteria Function unknown 157964549 Common - hypothetical protein RMA_0666 1 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 157964307 Common efp Translation elongation factor EF-P RMA_0329 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 157964825 Common xth2 Exodeoxyribonuclease III RMA_1063 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 157964360 Common virB9-1 VirB9 RMA_0395 56 COG3504 VirB9, Type IV secretory pathway, VirB9 components Intracellular trafficking and secretion 157964624 Common cmk Cytidylate kinase RMA_0758 205 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 157964237 Common acrF Hydrophobe/amphiphile efflux-1 (HAE1) family protein RMA_0220 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 157964511 Common ilvE Branched-chain amino acid aminotransferase RMA_0609 214 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 157964120 Common uhpC Sugar phosphate permease RMA_0089 156 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 157964987 Common - hypothetical protein RMA_1323 1 None None None 157964294 Common parE DNA topoisomerase IV, B subunit RMA_0315 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 157964619 Common spoT6 Guanosine polyphosphate pyrophosphohydrolase/synthetase RMA_0753 201 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 157964247 Common recN DNA repair protein RecN RMA_0242 223 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 157964912 Common fabF 3-oxoacyl-[acyl carrier protein] synthase II RMA_1206 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 157964479 Common dut Deoxyuridine 5'-triphosphate nucleotidohydrolase RMA_0563 182 COG0756 Dut, dUTPase Nucleotide transport and metabolism 157964822 Common ostA Organic solvent tolerance protein-like protein RMA_1058 91 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 157965033 Common - hypothetical protein RMA_1380 2 None None None