Vibrio harveyi ATCC BAA-1116 plasmid pVIBHAR, complete sequence NC_009777 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 156936776 Common - hypothetical protein VIBHAR_p08260 5 None None None 156936785 Common - DNA-directed DNA polymerase VIBHAR_p08269 167 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 156936748 Common - prevent-host-death family protein VIBHAR_p08232 11 None None None 156936731 Common - conjugal transfer prepropilin VIBHAR_p08215 2 None None None 156936713 Common - hypothetical protein VIBHAR_p08197 2 None None None 156936681 Common - DNA repair protein RadC VIBHAR_p08165 177 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 156936743 Common - chromosome partitioning protein ParA VIBHAR_p08227 221 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 156936780 Pathogen - hypothetical protein VIBHAR_p08264 1 None None None 156936757 Pathogen - hypothetical protein VIBHAR_p08241 1 None None None 156936720 Common - type II secretion system protein E VIBHAR_p08204 182 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 156936794 Common - transposase VIBHAR_p08278 53 None None None 156936694 Common - transposase VIBHAR_p08178 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936725 Pathogen - hypothetical protein VIBHAR_p08209 1 None None None 156936765 Common - site-specific recombinase VIBHAR_p08249 16 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 156936770 Pathogen - hypothetical protein VIBHAR_p08254 2 None None None 156936778 Pathogen - hypothetical protein VIBHAR_p08262 2 None None None 156936711 Pathogen - hypothetical protein VIBHAR_p08195 1 None None None 156936698 Common - transposase VIBHAR_p08182 40 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936733 Pathogen - hypothetical protein VIBHAR_p08217 1 None None None 156936710 Common - transposase VIBHAR_p08194 17 None None None 156936688 Pathogen - hypothetical protein VIBHAR_p08172 1 None None None 156936691 Pathogen - hypothetical protein VIBHAR_p08175 1 None None None 156936677 Pathogen - hypothetical protein VIBHAR_p08161 2 None None None 156936696 Common - hypothetical protein VIBHAR_p08180 4 None None None 156936679 Pathogen - hypothetical protein VIBHAR_p08163 1 None None None 156936772 Common - pili retraction protein PilT VIBHAR_p08256 24 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 156936779 Pathogen - hypothetical protein VIBHAR_p08263 1 None None None 156936750 Common - hypothetical protein VIBHAR_p08234 104 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 156936706 Pathogen - hypothetical protein VIBHAR_p08190 1 None None None 156936680 Pathogen - hypothetical protein VIBHAR_p08164 1 None None None 156936784 Pathogen - hypothetical protein VIBHAR_p08268 1 None None None 156936685 Common - type I restriction-modification system methyltransferase subunit VIBHAR_p08169 16 None None None 156936755 Common - N-acetyltransferase VIBHAR_p08239 69 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 156936675 Common - transposase VIBHAR_p08159 49 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936717 Common - DNA topoisomerase III VIBHAR_p08201 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 156936736 Common - DNA-binding protein RDGA VIBHAR_p08220 2 COG2932 COG2932, Predicted transcriptional regulator Transcription 156936740 Common - hypothetical protein VIBHAR_p08224 3 None None None 156936739 Pathogen - hypothetical protein VIBHAR_p08223 1 None None None 156936702 Common - transposase VIBHAR_p08186 40 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936708 Common - transposase VIBHAR_p08192 52 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936761 Common - resolvase VIBHAR_p08245 119 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 156936752 Common - transposase VIBHAR_p08236 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936724 Common - conjugal transfer protein TraG VIBHAR_p08208 32 COG3736 VirB8, Type IV secretory pathway, component VirB8 Intracellular trafficking and secretion 156936678 Pathogen - hypothetical protein VIBHAR_p08162 1 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 156936789 Pathogen - hypothetical protein VIBHAR_p08273 1 None None None 156936690 Common - relaxase NikB VIBHAR_p08174 9 None None None 156936782 Common - plasmid partition protein ParB VIBHAR_p08266 9 None None None 156936767 Pathogen - hypothetical protein VIBHAR_p08251 1 None None None 156936714 Common - transcriptional regulator, ArsR family VIBHAR_p08198 65 COG0640 ArsR, Predicted transcriptional regulators Transcription 156936728 Common - conjugal transfer protein TrbJ VIBHAR_p08212 6 None None None 156936760 Pathogen - hypothetical protein VIBHAR_p08244 1 None None None 156936741 Pathogen - hypothetical protein VIBHAR_p08225 1 None None None 156936715 Pathogen - hypothetical protein VIBHAR_p08199 1 None None None 156936683 Pathogen - hypothetical protein VIBHAR_p08167 1 None None None 156936787 Common - hypothetical protein VIBHAR_p08271 7 None None None 156936791 Pathogen - hypothetical protein VIBHAR_p08275 1 None None None 156936738 Common - lycopene biosynthesis protein VIBHAR_p08222 38 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 156936774 Common - RNA-directed DNA polymerase VIBHAR_p08258 87 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 156936732 Common - conjugal transfer protein TraB VIBHAR_p08216 23 None None None 156936709 Common - transposase VIBHAR_p08193 86 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936692 Pathogen - hypothetical protein VIBHAR_p08176 1 None None None 156936746 Pathogen - hypothetical protein VIBHAR_p08230 1 None None None 156936722 Common - conjugal transfer protein VIBHAR_p08206 59 COG2948 VirB10, Type IV secretory pathway, VirB10 components Intracellular trafficking and secretion 156936754 Common - hypothetical protein VIBHAR_p08238 4 None None None 156936726 Common - conjugal transfer protein TraA VIBHAR_p08210 31 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 156936793 Common - transposase VIBHAR_p08277 49 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936768 Pathogen - hypothetical protein VIBHAR_p08252 2 None None None 156936704 Common - hypothetical protein VIBHAR_p08188 2 None None None 156936734 Common - conjugative transfer protein TraY VIBHAR_p08218 2 None None None 156936684 Pathogen - hypothetical protein VIBHAR_p08168 1 None None None 156936729 Common - conjugal transfer protein TraE VIBHAR_p08213 57 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 156936744 Pathogen - hypothetical protein VIBHAR_p08228 1 None None None 156936788 Common - hypothetical protein VIBHAR_p08272 16 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 156936775 Pathogen - hypothetical protein VIBHAR_p08259 1 None None None 156936712 Common - hypothetical protein VIBHAR_p08196 18 None None None 156936689 Common - relaxosome NikA VIBHAR_p08173 2 None None None 156936697 Common - transposase VIBHAR_p08181 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936687 Common - hypothetical protein VIBHAR_p08171 9 None None None 156936766 Common - replication protein VIBHAR_p08250 5 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 156936707 Pathogen - hypothetical protein VIBHAR_p08191 1 None None None 156936747 Common - plasmid stabilization protein VIBHAR_p08231 5 None None None 156936777 Common - hypothetical protein VIBHAR_p08261 3 None None None 156936763 Common - plasmid stabilization protein ParE VIBHAR_p08247 18 COG3668 ParE, Plasmid stabilization system protein General function prediction only 156936759 Pathogen - hypothetical protein VIBHAR_p08243 1 None None None 156936718 Common - sex pilus assembly and synthesis protein VIBHAR_p08202 1 None None None 156936705 Common - transposase VIBHAR_p08189 19 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936723 Common - conjugal transfer outer membrane protein TraH VIBHAR_p08207 50 COG3504 VirB9, Type IV secretory pathway, VirB9 components Intracellular trafficking and secretion 156936786 Common - DNA polymerase V subunit VIBHAR_p08270 68 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 156936699 Pathogen - hypothetical protein VIBHAR_p08183 1 None None None 156936719 Common - conjugal transfer protein TraK VIBHAR_p08203 58 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 156936682 Pathogen - hypothetical protein VIBHAR_p08166 1 None None None 156936730 Pathogen - conjugal transfer protein traD VIBHAR_p08214 1 None None None 156936764 Pathogen - site-specific recombinase VIBHAR_p08248 5 None None None 156936701 Common - integrase, catalytic region VIBHAR_p08185 153 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936693 Common - transposase VIBHAR_p08177 18 None None None 156936751 Common - hypothetical protein VIBHAR_p08235 3 COG4469 CoiA, Competence protein General function prediction only 156936721 Pathogen - hypothetical protein VIBHAR_p08205 1 None None None 156936790 Common - RNA-directed DNA polymerase VIBHAR_p08274 85 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 156936781 Common - hypothetical protein VIBHAR_p08265 6 None None None 156936716 Common - permease VIBHAR_p08200 92 COG0701 COG0701, Predicted permeases General function prediction only 156936783 Common - plasmid partition protein ParA VIBHAR_p08267 199 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 156936749 Pathogen - hypothetical protein VIBHAR_p08233 1 None None None 156936735 Pathogen - hypothetical protein VIBHAR_p08219 1 None None None 156936700 Pathogen - hypothetical protein VIBHAR_p08184 1 None None None 156936756 Common - hypothetical protein VIBHAR_p08240 2 None None None 156936771 Common - hypothetical protein VIBHAR_p08255 3 None None None 156936769 Pathogen - hypothetical protein VIBHAR_p08253 2 None None None 156936695 Common - transposase VIBHAR_p08179 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936742 Pathogen - hypothetical protein VIBHAR_p08226 1 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 156936703 Pathogen - hypothetical protein VIBHAR_p08187 1 None None None 156936762 Common - prevent-host-death family protein VIBHAR_p08246 10 None None None 156936753 Common - transposase VIBHAR_p08237 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 156936745 Pathogen - hypothetical protein VIBHAR_p08229 1 None None None 156936686 Pathogen - hypothetical protein VIBHAR_p08170 1 None None None 156936676 Common - hypothetical protein VIBHAR_p08160 4 None None None 156936773 Pathogen - hypothetical protein VIBHAR_p08257 1 None None None 156936758 Pathogen - hypothetical protein VIBHAR_p08242 1 None None None 156936727 Pathogen - hypothetical protein VIBHAR_p08211 3 None None None 156936792 Common - transposase VIBHAR_p08276 6 None None None 156936737 Pathogen - hypothetical protein VIBHAR_p08221 1 None None None