Bacillus amyloliquefaciens FZB42, complete genome NC_009725 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 154684645 Common rplX RplX RBAM_001520 213 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 154684542 Common bofA BofA RBAM_000290 1 None None None 154685247 Common yflB YflB RBAM_007930 22 None None None 154687992 Common ydhT YdhT RBAM_035930 18 COG4124 ManB, Beta-mannanase Carbohydrate transport and metabolism 154685797 Common ykvZ YkvZ RBAM_013640 128 COG1609 PurR, Transcriptional regulators Transcription 154687737 Common - hypothetical protein RBAM_033380 2 None None None 154686494 Common ypjG YpjG RBAM_020620 51 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 154687210 Common yteA YteA RBAM_027820 97 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 154686990 Common lcfA LcfA RBAM_025620 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154687548 Common yvfV YvfV RBAM_031470 165 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 154686608 Common yqkD YqkD RBAM_021770 69 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 154687209 Common menF MenF RBAM_027810 223 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154687539 Common - hypothetical protein RBAM_031380 4 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 154687470 Common copZ CopZ RBAM_030690 98 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 154686386 Common yodQ YodQ RBAM_019540 205 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 154687175 Common nrsA NrsA RBAM_027470 50 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 154685845 Common fruR FruR RBAM_014120 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 154686023 Common ylqG YlqG RBAM_015900 3 None None None 154684696 Common ybbM YbbM RBAM_002270 7 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 154684525 Common gyrA GyrA RBAM_000070 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 154687642 Common cccB CccB RBAM_032420 3 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 154685723 Common ykkC YkkC RBAM_012900 52 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154686179 Nonpathogen yopD YopD RBAM_017460 1 None None None 154687884 Common pta Pta RBAM_034850 164 COG0280 Pta, Phosphotransacetylase Energy production and conversion 154684971 Common rsbS RsbS RBAM_005020 30 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154687366 Common yurN YurN RBAM_029650 148 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 154688127 Common - putative ABC transporter ATP-binding protein RBAM_037280 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 154685313 Common yfhG YfhG RBAM_008590 40 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 154684852 Common yclD2 YclD2 RBAM_003830 2 None None None 154686112 Common pbpX PbpX RBAM_016790 143 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 154686100 Common - hypothetical protein RBAM_016670 161 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154688113 Common - hypothetical protein RBAM_037140 4 None None None 154687260 Common pbpD PbpD RBAM_028590 201 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 154688166 Common - hypothetical protein RBAM_037710 189 COG0583 LysR, Transcriptional regulator Transcription 154687454 Common - two-component sensor histidine kinase RBAM_030530 120 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685924 Common ylbL YlbL RBAM_014910 113 COG3480 SdrC, Predicted secreted protein containing a PDZ domain Signal transduction mechanisms 154687217 Common gbsB GbsB RBAM_028150 172 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 154686460 Common ypvA YpvA RBAM_020280 134 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 154688121 Common - hypothetical protein RBAM_037220 2 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 154686823 Common yqeK YqeK RBAM_023930 43 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 154685659 Nonpathogen yjgB YjgB RBAM_012260 1 None None None 154684640 Common rpsC RpsC RBAM_001470 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 154686724 Common sinR SinR RBAM_022930 62 COG1396 HipB, Predicted transcriptional regulators Transcription 154684540 Common recR RecR RBAM_000270 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 154688042 Common hutI HutI RBAM_036430 115 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 154687152 Common ytwF YtwF RBAM_027240 96 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 154685813 Common cheV CheV RBAM_013800 197 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 154687841 Common narH NarH RBAM_034420 145 COG1140 NarY, Nitrate reductase beta subunit Energy production and conversion 154686176 Common - nuclease inhibitor (dinB like protein) RBAM_017430 2 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154687010 Common araM AraM RBAM_025820 112 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 154684672 Common cwlD CwlD RBAM_001790 143 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154686645 Common rpmGA1 RpmGA1 RBAM_022140 89 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 154686479 Common ponA PonA RBAM_020470 201 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 154685429 Common yheH YheH RBAM_009950 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154687654 Common yviE YviE RBAM_032540 9 None None None 154686204 Common yneF YneF RBAM_017710 7 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 154685280 Nonpathogen - hypothetical protein RBAM_008260 1 None None None 154687499 Common spaR SpaR RBAM_030980 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154687303 Common dhbB DhbB RBAM_029020 88 COG1535 EntB, Isochorismate hydrolase Secondary metabolites biosynthesis, transport, and catabolism 154686496 Common dapB DapB RBAM_020640 216 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 154685091 Common ydiB YdiB RBAM_006360 209 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 154687202 Common - hypothetical protein RBAM_027740 4 None None None 154684877 Common yclQ YclQ RBAM_004080 70 COG4607 CeuA, ABC-type enterochelin transport system, periplasmic component Inorganic ion transport and metabolism 154686904 Common yrvD YrvD RBAM_024740 12 COG5416 COG5416, Uncharacterized integral membrane protein Function unknown 154685343 Nonpathogen senN SenN RBAM_009080 1 None None None 154685404 Common citA CitA RBAM_009700 194 COG0372 GltA, Citrate synthase Energy production and conversion 154687029 Common ytxB YtxB RBAM_026010 58 COG0398 COG0398, Uncharacterized conserved protein Function unknown 154687565 Common epsD EpsD RBAM_031640 225 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154687373 Common - hypothetical protein RBAM_029720 145 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154685292 Common glvC GlvC RBAM_008380 55 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154685422 Common npdA NpdA RBAM_009880 152 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 154688084 Common yocG YocG RBAM_036850 212 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154686051 Common fliZ FliZ RBAM_016180 3 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 154686302 Common - hypothetical protein RBAM_018700 119 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 154686534 Common fni Fni RBAM_021020 96 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 154686871 Common yrrR YrrR RBAM_024410 199 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 154686515 Common trpD TrpD RBAM_020830 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 154687532 Common cggR CggR RBAM_031310 31 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 154687726 Nonpathogen - hypothetical protein RBAM_033260 1 None None None 154684666 Common truA TruA RBAM_001730 237 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 154687541 Common - hypothetical protein RBAM_031400 41 COG2364 COG2364, Predicted membrane protein Function unknown 154685349 Common ssuD SsuD RBAM_009140 88 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154687657 Common yvyG YvyG RBAM_032570 7 None None None 154686056 Common flhA FlhA RBAM_016230 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 154687024 Common lytT LytT RBAM_025960 218 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 154686729 Common yqzE YqzE RBAM_022980 3 None None None 154685417 Common yhdU YhdU RBAM_009830 1 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 154687621 Common nagB NagB RBAM_032210 84 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 154686882 Common yrrI YrrI RBAM_024520 178 COG0628 PerM, Predicted permease General function prediction only 154687950 Common - hypothetical protein RBAM_035510 4 None None None 154685241 Nonpathogen yflI YflI RBAM_007870 1 None None None 154686552 Nonpathogen ypzE YpzE RBAM_021210 1 None None None 154686943 Common folC FolC RBAM_025130 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 154687680 Common lytR LytR RBAM_032800 61 COG1316 LytR, Transcriptional regulator Transcription 154687897 Common rocA RocA RBAM_034980 218 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154687687 Common tagD TagD RBAM_032870 108 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 154684745 Common ybgE YbgE RBAM_002760 212 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 154684616 Common sigH SigH RBAM_001230 96 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154687871 Common ywzC YwzC RBAM_034720 3 COG4844 COG4844, Uncharacterized protein conserved in bacteria Function unknown 154687865 Common ywhC YwhC RBAM_034660 86 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 154684980 Common ydcK YdcK RBAM_005110 12 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 154684886 Common glcU GlcU RBAM_004170 12 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 154685236 Common yflN YflN RBAM_007820 117 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154686229 Common yjmD YjmD RBAM_017960 216 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154687221 Common yuaA YuaA RBAM_028190 112 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 154686130 Common baeI BaeI RBAM_016970 161 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 154685591 Common yjbI YjbI RBAM_011570 69 COG2346 COG2346, Truncated hemoglobins General function prediction only 154688055 Common yxeB YxeB RBAM_036560 71 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 154685643 Common yfjF YfjF RBAM_012100 207 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685023 Common trkA TrkA RBAM_005610 80 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 154687104 Common - putative transcriptional regulator RBAM_026760 40 COG1378 COG1378, Predicted transcriptional regulators Transcription 154685069 Common yjhB YjhB RBAM_006070 66 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 154687714 Common ywsB YwsB RBAM_033140 1 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 154688018 Common bglS BglS RBAM_036190 24 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 154685505 Common sipV SipV RBAM_010710 171 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 154686584 Common spoVAC SpoVAC RBAM_021530 15 None None None 154685626 Common ycjH YcjH RBAM_011920 30 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 154684658 Common rpmJ RpmJ RBAM_001650 136 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 154687619 Common hprK HprK RBAM_032190 77 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 154686605 Common nudF NudF RBAM_021740 190 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 154686921 Common nadC NadC RBAM_024910 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 154685780 Common ykvI YkvI RBAM_013470 22 COG3949 COG3949, Uncharacterized membrane protein Function unknown 154685147 Common purM PurM RBAM_006920 233 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 154686803 Common yqeV YqeV RBAM_023730 234 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 154686249 Common bmyC BmyC RBAM_018160 224 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686375 Common - hypothetical protein RBAM_019430 2 None None None 154685575 Common yjbA YjbA RBAM_011410 3 None None None 154687462 Common yvgR YvgR RBAM_030610 106 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 154686935 Common minC MinC RBAM_025050 53 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 154687145 Common yteV YteV RBAM_027170 2 None None None 154684805 Common nadE NadE RBAM_003360 214 COG0171 NadE, NAD synthase Coenzyme metabolism 154688209 Common spoIIIJ SpoIIIJ RBAM_038140 211 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 154684894 Common mtlD MtlD RBAM_004250 86 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 154685084 Common yvdT YvdT RBAM_006220 85 COG1309 AcrR, Transcriptional regulator Transcription 154686979 Common sdhA SdhA RBAM_025510 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 154685352 Common yhzB YhzB RBAM_009180 2 COG3382 COG3382, Uncharacterized conserved protein Function unknown 154685136 Nonpathogen yebD YebD RBAM_006810 1 None None None 154686061 Common cheW CheW RBAM_016280 130 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 154686626 Common dfnL DfnL RBAM_021950 28 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 154685473 Common yhgE YhgE RBAM_010390 42 COG1511 COG1511, Predicted membrane protein Function unknown 154686120 Common cotE CotE RBAM_016870 3 None None None 154687389 Common gcvH GcvH RBAM_029880 188 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 154686786 Common glyS GlyS RBAM_023560 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 154687038 Common ytaG YtaG RBAM_026100 210 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 154685975 Common sat Sat RBAM_015420 64 COG2046 MET3, ATP sulfurylase (sulfate adenylyltransferase) Inorganic ion transport and metabolism 154686212 Common sspO SspO RBAM_017790 2 None None None 154685409 Common yhdL YhdL RBAM_009750 5 None None None 154686217 Common tlp Tlp RBAM_017840 6 None None None 154684609 Common yacN YacN RBAM_001160 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 154686098 Common ftsK FtsK RBAM_016650 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 154687702 Common ywtB YwtB RBAM_033020 83 COG2843 PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Cell envelope biogenesis, outer membrane 154684807 Common tmrB TmrB RBAM_003380 13 COG2074 COG2074, 2-phosphoglycerate kinase Carbohydrate transport and metabolism 154686091 Common spoVFB SpoVFB RBAM_016580 14 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 154684865 Common yxeQ YxeQ RBAM_003960 60 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 154688048 Common deoR DeoR RBAM_036490 70 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 154685718 Common ykfD YkfD RBAM_012850 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 154687469 Common copA CopA RBAM_030680 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 154686594 Common - hypothetical protein RBAM_021630 3 None None None 154685930 Common ylbQ YlbQ RBAM_014970 78 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 154686708 Common yqhV YqhV RBAM_022770 6 None None None 154684920 Common ydaL YdaL RBAM_004510 10 COG5298 COG5298, Uncharacterized protein conserved in bacteria Function unknown 154685541 Common cypC CypC RBAM_011070 36 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 154686510 Common hisC HisC RBAM_020780 240 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 154684837 Common srfAC SrfAC RBAM_003680 214 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154685518 Common gerPF GerPF RBAM_010840 2 None None None 154687932 Common ywcH YwcH RBAM_035330 114 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154684769 Common yccC YccC RBAM_003000 134 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 154686568 Common ypuF YpuF RBAM_021370 14 COG1547 COG1547, Uncharacterized conserved protein Function unknown 154686675 Common mmgB MmgB RBAM_022440 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 154686957 Common lonB LonB RBAM_025270 243 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 154685005 Common yrkE YrkE RBAM_005430 41 COG2210 COG2210, Uncharacterized conserved protein Function unknown 154685955 Common ylmF YlmF RBAM_015220 54 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 154688200 Common - hypothetical protein RBAM_038050 45 COG0456 RimI, Acetyltransferases General function prediction only 154685689 Common xkdD XkdD RBAM_012560 1 None None None 154686651 Common yqjG YqjG RBAM_022200 198 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 154686951 Common hemC HemC RBAM_025210 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 154686126 Common baeE BaeE RBAM_016930 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 154687394 Common - hypothetical protein RBAM RBAM_029930 2 None None None 154685530 Common yisP YisP RBAM_010960 30 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 154687973 Common dltD DltD RBAM_035740 13 COG3966 DltD, Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cell envelope biogenesis, outer membrane 154686317 Common yobQ YobQ RBAM_018850 124 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 154686658 Common yqiY YqiY RBAM_022270 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154686928 Common spo0B Spo0B RBAM_024980 3 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 154688192 Common adaA AdaA RBAM_037970 158 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 154684778 Common ycdF YcdF RBAM_003090 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686521 Common ndk Ndk RBAM_020890 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 154686255 Common scoA ScoA RBAM_018220 104 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 154685017 Common - hypothetical protein RBAM_005550 2 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154684925 Common ydaP YdaP RBAM_004560 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 154685612 Common cotW CotW RBAM_011780 1 None None None 154685122 Common ydjN YdjN RBAM_006670 1 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 154687545 Common gntP GntP RBAM_031440 81 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 154684579 Common yabP YabP RBAM_000690 15 None None None 154685052 Common yraF YraF RBAM_005900 3 COG5577 COG5577, Spore coat protein Cell envelope biogenesis, outer membrane 154686701 Common spoIIIAG SpoIIIAG RBAM_022700 13 None None None 154686192 Common yobO YobO RBAM_017590 6 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 154686852 Common - hypothetical protein RBAM_024220 130 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 154687293 Common yueB YueB RBAM_028920 15 COG1511 COG1511, Predicted membrane protein Function unknown 154685941 Common murG MurG RBAM_015080 210 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 154686403 Nonpathogen yoqN YoqN RBAM_019710 1 None None None 154685431 Nonpathogen yheF YheF RBAM_009970 1 None None None 154686292 Nonpathogen - hypothetical protein RBAM_018600 1 None None None 154686455 Common ydfR YdfR RBAM_020230 51 COG2323 COG2323, Predicted membrane protein Function unknown 154687946 Common ywcD YwcD RBAM_035470 14 COG2246 COG2246, Predicted membrane protein Function unknown 154687364 Common yurL YurL RBAM_029630 125 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 154686025 Common sucC SucC RBAM_015920 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 154685041 Common - hypothetical protein RBAM_005790 39 COG3963 COG3963, Phospholipid N-methyltransferase Lipid metabolism 154685650 Common lacF LacF RBAM_012170 32 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 154686466 Common ypsA YpsA RBAM_020340 12 COG4474 COG4474, Uncharacterized protein conserved in bacteria Function unknown 154688134 Common yyxA YyxA RBAM_037350 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 154686353 Common yojH YojH RBAM_019210 32 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154685729 Common ohrR OhrR RBAM_012960 90 COG1846 MarR, Transcriptional regulators Transcription 154686965 Common ilvC IlvC RBAM_025350 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 154685216 Common yhxD YhxD RBAM_007610 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154685032 Common - hypothetical protein RBAM_005700 71 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154685894 Nonpathogen ylaE YlaE RBAM_014610 1 None None None 154686744 Common yqgV YqgV RBAM_023140 43 COG0011 COG0011, Uncharacterized conserved protein Function unknown 154685059 Common ynaD YnaD RBAM_005970 149 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154685745 Common ykoK YkoK RBAM_013120 168 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 154687243 Nonpathogen yugM YugM RBAM_028420 1 None None None 154686487 Common dinG DinG RBAM_020550 214 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 154687995 Common yxlA YxlA RBAM_035960 63 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 154685303 Common - putative RNAse inhibitor RBAM_008490 11 COG2732 COG2732, Barstar, RNAse (barnase) inhibitor Transcription 154687831 Common rpoE RpoE RBAM_034320 13 COG3343 RpoE, DNA-directed RNA polymerase, delta subunit Transcription 154688097 Common - hypothetical protein RBAM_036980 66 COG3177 COG3177, Uncharacterized conserved protein Function unknown 154684771 Common yccF YccF RBAM_003020 2 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 154685226 Common pel Pel RBAM_007720 20 COG3866 PelB, Pectate lyase Carbohydrate transport and metabolism 154686316 Common csaA CsaA RBAM_018840 165 COG0073 ARC1, EMAP domain General function prediction only 154686244 Common - hypothetical protein RBAM_018110 6 None None None 154685545 Common - hypothetical protein RBAM RBAM_011110 2 None None None 154687345 Common yunA YunA RBAM_029440 22 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 154685789 Nonpathogen ykvR YkvR RBAM_013560 2 None None None 154685734 Common - hypothetical protein RBAM_013010 2 None None None 154685889 Common ylaA1 YlaA1 RBAM_014560 1 None None None 154686716 Common yqhM YqhM RBAM_022850 94 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 154686371 Common yodH YodH RBAM_019390 154 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154687065 Common argH ArgH RBAM_026370 228 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 154687819 Common ywkB YwkB RBAM_034200 82 COG0679 COG0679, Predicted permeases General function prediction only 154684912 Common ydaF YdaF RBAM_004430 144 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154687857 Nonpathogen - hypothetical protein RBAM_034580 1 None None None 154685967 Common pyrAA PyrAA RBAM_015340 237 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 154687805 Common glyA GlyA RBAM_034060 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 154687698 Common ywtE YwtE RBAM_032980 135 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154687953 Common ywbM YwbM RBAM_035540 2 COG2822 COG2822, Predicted periplasmic lipoprotein involved in iron transport Inorganic ion transport and metabolism 154686449 Common ypbS YpbS RBAM_020170 2 None None None 154684630 Common fusA FusA RBAM_001370 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 154686735 Common comGB ComGB RBAM_023040 35 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 154687554 Common epsO EpsO RBAM_031530 20 COG5039 COG5039, Exopolysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 154684532 Common glxK GlxK RBAM_000170 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 154686800 Common yqeY YqeY RBAM_023700 154 COG1610 COG1610, Uncharacterized conserved protein Function unknown 154685958 Common divIVA DivIVA RBAM_015250 42 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 154688007 Common galE GalE RBAM_036080 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 154685763 Common ykrP YkrP RBAM_013300 26 COG3594 NolL, Fucose 4-O-acetylase and related acetyltransferases Carbohydrate transport and metabolism 154686792 Common yqfG YqfG RBAM_023620 209 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 154685006 Common - putative rhodanese-like domain protein RBAM_005440 167 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 154686078 Common ylxR YlxR RBAM_016450 40 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 154685046 Common ydeS YdeS RBAM_005840 58 COG1309 AcrR, Transcriptional regulator Transcription 154685195 Nonpathogen - hypothetical protein RBAM_007400 1 None None None 154686399 Common yobA YobA RBAM_019670 2 None None None 154685902 Common ylaM YlaM RBAM_014690 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 154687980 Common yxlJ YxlJ RBAM_035810 83 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 154687003 Common ysfC YsfC RBAM_025750 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 154687236 Common yrpB YrpB RBAM_028350 143 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 154684845 Common yckI YckI RBAM_003760 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 154685184 Common yetF YetF RBAM_007290 59 COG2323 COG2323, Predicted membrane protein Function unknown 154687004 Common ysfD YsfD RBAM_025760 183 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 154684754 Common - hypothetical protein RBAM_002850 9 None None None 154686410 Common - two-component sensor histidine kinase RBAM_019780 159 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685010 Common yrkJ YrkJ RBAM_005480 34 COG0730 COG0730, Predicted permeases General function prediction only 154687133 Common ytlQ YtlQ RBAM_027050 3 None None None 154686606 Common yqkF YqkF RBAM_021750 206 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 154684528 Common dacA DacA RBAM_000130 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 154685364 Common yhcB YhcB RBAM_009300 115 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 154685186 Common yetH YetH RBAM_007310 24 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154687186 Common pckA PckA RBAM_027580 97 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 154686085 Common rpsO RpsO RBAM_016520 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 154684572 Common spoVC SpoVC RBAM_000620 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 154684995 Common - hypothetical protein RBAM_005330 99 COG1309 AcrR, Transcriptional regulator Transcription 154686178 Common yoaW YoaW RBAM_017450 1 None None None 154684847 Common yckK YckK RBAM_003780 172 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 154685900 Common ylaK YlaK RBAM_014670 195 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 154686488 Common panD PanD RBAM_020560 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 154687911 Common spsE SpsE RBAM_035120 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 154686181 Common - hypothetical protein RBAM_017480 58 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154685526 Common yisL YisL RBAM_010920 5 None None None 154684679 Common yktc1 Yktc1 RBAM_002050 25 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 154684594 Common pabA PabA RBAM_000860 240 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 154685926 Common ylbN YlbN RBAM_014930 19 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 154687265 Common yufN YufN RBAM_028640 104 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 154685993 Common prkC PrkC RBAM_015600 160 COG2815 COG2815, Uncharacterized protein conserved in bacteria Function unknown 154685163 Common gatA GatA RBAM_007080 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 154687408 Common yusW YusW RBAM_030070 1 None None None 154687575 Common yveG YveG RBAM_031740 5 None None None 154686039 Common fliH FliH RBAM_016060 14 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 154687526 Common ywaD YwaD RBAM_031250 53 COG2234 Iap, Predicted aminopeptidases General function prediction only 154684716 Common yfnB YfnB RBAM_002470 37 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 154685105 Nonpathogen ykuH YkuH RBAM_006500 1 None None None 154685810 Common kinA KinA RBAM_013770 113 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 154686663 Common bkdAB BkdAB RBAM_022320 221 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 154687694 Common gerBC GerBC RBAM_032940 15 None None None 154688090 Common yxaJ YxaJ RBAM_036910 1 None None None 154686125 Common baeD BaeD RBAM_016920 202 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687423 Common yvqE YvqE RBAM_030220 149 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685270 Common yfkD YfkD RBAM_008160 3 None None None 154685483 Common yhfN YhfN RBAM_010490 62 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 154687341 Common yutF YutF RBAM_029400 123 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 154685537 Common yitk Yitk RBAM_011030 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 154685819 Common ykuI YkuI RBAM_013860 138 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 154684940 Common yvaE YvaE RBAM_004710 142 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154686842 Common yqaC YqaC RBAM_024120 13 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 154687448 Common yvsG YvsG RBAM_030470 35 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 154684567 Common yabJ YabJ RBAM_000570 190 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 154684657 Common infA InfA RBAM_001640 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 154685461 Common hit Hit RBAM_010270 238 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 154688154 Common yybT YybT RBAM_037590 85 COG3887 COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain Signal transduction mechanisms 154687426 Common yvqH YvqH RBAM_030250 68 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 154684802 Common yqcI YqcI RBAM_003330 16 COG3403 COG3403, Uncharacterized conserved protein Function unknown 154685266 Common yfkI YfkI RBAM_008120 1 None None None 154685594 Common yjbL YjbL RBAM_011600 3 None None None 154686080 Common infB InfB RBAM_016470 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 154688118 Common yycO YycO RBAM_037190 5 COG3863 COG3863, Uncharacterized distant relative of cell wall-associated hydrolases Function unknown 154685225 Common yflT YflT RBAM_007710 2 None None None 154684855 Nonpathogen yczF YczF RBAM_003860 1 None None None 154686627 Common dfnK DfnK RBAM_021960 85 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 154687045 Common icd Icd RBAM_026170 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 154687564 Common epsE EpsE RBAM_031630 185 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154685131 Common guaA GuaA RBAM_006760 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 154686814 Common gpr Gpr RBAM_023840 15 None None None 154685306 Common yfiV YfiV RBAM_008520 75 COG1846 MarR, Transcriptional regulators Transcription 154684784 Common yceC YceC RBAM_003150 29 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 154687072 Common ytfI YtfI RBAM_026440 10 None None None 154685863 Common defB DefB RBAM_014300 212 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 154687079 Common thiI ThiI RBAM_026510 93 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 154687278 Common comP ComP RBAM_028770 132 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685875 Common pdhA PdhA RBAM_014420 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 154686156 Common ynbA YnbA RBAM_017230 212 COG2262 HflX, GTPases General function prediction only 154685604 Common thiG ThiG RBAM_011700 168 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 154687411 Common mrgA MrgA RBAM_030100 143 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 154686015 Common rpsP RpsP RBAM_015820 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 154687146 Common msmR MsmR RBAM_027180 125 COG1609 PurR, Transcriptional regulators Transcription 154687748 Common ywqB YwqB RBAM_033490 3 COG4715 COG4715, Uncharacterized conserved protein Function unknown 154684968 Common ydcD YdcD RBAM_004990 14 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 154684866 Common yclH YclH RBAM_003970 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 154687256 Common kinB KinB RBAM_028550 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685676 Common yjnA YjnA RBAM_012430 65 COG0730 COG0730, Predicted permeases General function prediction only 154685071 Common ycsA YcsA RBAM_006090 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 154684789 Common yceH YceH RBAM_003200 40 COG3853 TelA, Uncharacterized protein involved in tellurite resistance Inorganic ion transport and metabolism 154686163 Common - hypothetical protein RBAM_017300 1 None None None 154684683 Common ybaA YbaA RBAM_002090 34 COG2819 COG2819, Predicted hydrolase of the alpha/beta superfamily General function prediction only 154684601 Common ctsR CtsR RBAM_001080 22 COG4463 CtsR, Transcriptional repressor of class III stress genes Transcription 154687773 Common ywnH YwnH RBAM_033740 116 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 154686332 Common yocM YocM RBAM_019000 21 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 154687691 Common pmi Pmi RBAM_032910 52 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 154684965 Common acpS AcpS RBAM_004960 166 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 154688027 Nonpathogen yxiG YxiG RBAM_036280 2 None None None 154685781 Nonpathogen - hypothetical protein RBAM_013480 3 None None None 154685854 Common mreBH MreBH RBAM_014210 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 154685117 Common yrhL YrhL RBAM_006620 115 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 154685744 Common ykzD YkzD RBAM_013110 1 None None None 154685522 Common gerPB GerPB RBAM_010880 2 None None None 154684586 Common yacA YacA RBAM_000780 196 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 154684932 Nonpathogen - hypothetical protein RBAM_004630 1 None None None 154686392 Common cgeD CgeD RBAM_019600 132 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154685334 Common gsaB GsaB RBAM_008800 236 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 154687324 Nonpathogen - hypothetical protein RBAM_029230 1 None None None 154686777 Common yqfP YqfP RBAM_023470 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 154687313 Common yuiC YuiC RBAM_029120 24 COG3584 COG3584, Uncharacterized protein conserved in bacteria Function unknown 154686424 Common ilvA IlvA RBAM_019920 213 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 154685768 Common ykrU YkrU RBAM_013350 206 COG0388 COG0388, Predicted amidohydrolase General function prediction only 154686299 Common - putative acetyltransferase (gnat family) RBAM_018670 52 None None None 154687796 Common atpD AtpD RBAM_033970 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 154687962 Common ywbD YwbD RBAM_035630 134 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 154685393 Common yhcZ YhcZ RBAM_009590 223 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154687583 Common ywbF YwbF RBAM_031830 29 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 154687287 Common yueH YueH RBAM_028860 2 None None None 154687477 Common - hypothetical protein RBAM_030760 10 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 154686419 Common ypoP YpoP RBAM_019870 52 COG1846 MarR, Transcriptional regulators Transcription 154686997 Common rnhC RnhC RBAM_025690 30 COG1039 RnhC, Ribonuclease HIII DNA replication, recombination, and repair 154687174 Common nrsB NrsB RBAM_027460 31 COG0778 NfnB, Nitroreductase Energy production and conversion 154686442 Common ypeQ YpeQ RBAM_020100 3 None None None 154685621 Common - putative ABC-type multidrug transport system, permease RBAM_011870 67 COG1511 COG1511, Predicted membrane protein Function unknown 154685849 Common ykoA YkoA RBAM_014160 1 None None None 154686764 Common sodA SodA RBAM_023340 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 154686432 Common yphP YphP RBAM_020000 11 None None None 154687760 Common mbl Mbl RBAM_033610 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 154684615 Common yacP YacP RBAM_001220 28 COG3688 COG3688, Predicted RNA-binding protein containing a PIN domain General function prediction only 154685317 Common mpr Mpr RBAM_008630 16 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 154686563 Common spmA SpmA RBAM_021320 39 COG2715 SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. General function prediction only 154684798 Common ldh Ldh RBAM_003290 175 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 154687337 Common thrC ThrC RBAM_029360 231 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 154688137 Common yycH YycH RBAM_037380 7 COG4863 COG4863, Uncharacterized protein conserved in bacteria Function unknown 154684665 Common ybaF YbaF RBAM_001720 100 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 154685253 Common treR TreR RBAM_007990 104 COG2188 PhnF, Transcriptional regulators Transcription 154684954 Common ydbM YdbM RBAM_004850 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 154685981 Common yloB YloB RBAM_015480 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 154686914 Common ruvB RuvB RBAM_024840 226 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 154685881 Common - hypothetical protein RBAM_014480 2 None None None 154686495 Common mgsA MgsA RBAM_020630 88 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism 154685282 Common yfjN YfjN RBAM_008280 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 154688079 Common iolS IolS RBAM_036800 209 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 154684570 Common prs Prs RBAM_000600 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 154687610 Common hisH HisH RBAM_032100 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 154685383 Common yhcV YhcV RBAM_009490 209 COG0517 COG0517, FOG: CBS domain General function prediction only 154687665 Common degS DegS RBAM_032650 151 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685690 Common xtrA XtrA RBAM_012570 2 None None None 154686642 Nonpathogen - hypothetical protein RBAM_022110 1 COG3136 GlpM, Uncharacterized membrane protein required for alginate biosynthesis General function prediction only 154685661 Common yjgD YjgD RBAM_012280 4 COG2427 COG2427, Uncharacterized conserved protein Function unknown 154687713 Common rbsB RbsB RBAM_033130 138 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 154685261 Common - putative Shikimate dehydrogenase RBAM_008070 225 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 154684937 Common - hypothetical protein RBAM_004680 1 None None None 154687669 Common tuaH TuaH RBAM_032690 66 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154686343 Common - hypothetical protein RBAM_019110 70 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154687736 Common - hypothetical protein RBAM_033360 131 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 154685713 Common dppD DppD RBAM_012800 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 154687438 Common yvrI YvrI RBAM_030370 5 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154686699 Common accB AccB RBAM_022680 170 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 154684973 Common rsbU RsbU RBAM_005040 108 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 154685796 Common ykvY YkvY RBAM_013630 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 154688184 Common - hypothetical protein RBAM_037890 142 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 154687126 Common ytzB YtzB RBAM_026980 7 COG5584 COG5584, Predicted small secreted protein Function unknown 154687832 Common ywjF YwjF RBAM_034330 107 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 154688004 Common yxkF YxkF RBAM_036050 23 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 154685386 Common yhxA YhxA RBAM_009520 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 154686140 Common aprX AprX RBAM_017070 148 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 154684646 Common rplE RplE RBAM_001530 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 154686361 Common yoaQ YoaQ RBAM_019290 5 None None None 154685444 Common yhaT YhaT RBAM_010100 27 COG0490 COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels Inorganic ion transport and metabolism 154688035 Common bglP BglP RBAM_036360 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154684813 Common ycgM YcgM RBAM_003440 127 COG0506 PutA, Proline dehydrogenase Amino acid transport and metabolism 154688064 Common mrsR2 MrsR2 RBAM_036650 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154687782 Common ureA UreA RBAM_033830 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 154684706 Nonpathogen - hypothetical protein RBAM_002370 1 None None None 154686385 Common yodP YodP RBAM_019530 19 None None None 154687878 Nonpathogen - hypothetical protein RBAM_034790 1 None None None 154686535 Common ypfD YpfD RBAM_021030 231 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 154686695 Common folD FolD RBAM_022640 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 154685086 Common ydhU YdhU RBAM_006240 45 COG3546 COG3546, Mn-containing catalase Inorganic ion transport and metabolism 154686150 Common nrdI NrdI RBAM_017170 36 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 154684825 Common - putative glutathione-dependent formaldehyde dehydrogenase RBAM_003560 208 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154686893 Common yrzC YrzC RBAM_024630 174 COG1959 COG1959, Predicted transcriptional regulator Transcription 154687722 Common cotH CotH RBAM_033220 21 COG5337 CotH, Spore coat assembly protein Cell envelope biogenesis, outer membrane 154684870 Common rapC RapC RBAM_004010 8 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 154686799 Common yqeZ YqeZ RBAM_023690 78 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 154685827 Common ykuP YkuP RBAM_013940 80 COG0716 FldA, Flavodoxins Energy production and conversion 154687810 Common ywlC YwlC RBAM_034110 241 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 154688195 Common rpsF RpsF RBAM_038000 206 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 154685879 Common slp Slp RBAM_014460 1 None None None 154684656 Common map Map RBAM_001630 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 154686437 Common metA MetA RBAM_020050 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 154686862 Common yrhE YrhE RBAM_024320 216 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 154688112 Common - hypothetical protein RBAM_037130 7 None None None 154685279 Common yfjO YfjO RBAM_008250 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 154687804 Common upp Upp RBAM_034050 165 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 154684681 Common ybaR YbaR RBAM_002070 159 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 154686252 Common bmyD BmyD RBAM_018190 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 154687574 Common padC PadC RBAM_031730 11 COG3479 COG3479, Phenolic acid decarboxylase Secondary metabolites biosynthesis, transport, and catabolism 154687396 Common - hypothetical protein RBAM_029950 3 None None None 154687523 Common - hypothetical protein RBAM_031220 234 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 154685026 Common - hypothetical protein RBAM_005640 233 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 154685517 Common yisB YisB RBAM_010830 14 None None None 154688013 Common yxjA YxjA RBAM_036140 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 154686516 Common trpE TrpE RBAM_020840 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 154686944 Common valS ValS RBAM_025140 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154687220 Common yuaB YuaB RBAM_028180 1 None None None 154686966 Common ilvH IlvH RBAM_025360 192 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 154686301 Common - putative dehydrogenase RBAM_018690 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154688120 Common yycN YycN RBAM_037210 25 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154685848 Common sipT SipT RBAM_014150 187 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 154684876 Common yclP YclP RBAM_004070 249 COG4604 CeuD, ABC-type enterochelin transport system, ATPase component Inorganic ion transport and metabolism 154685297 Common yfiE YfiE RBAM_008430 45 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 154684926 Common - hypothetical protein RBAM_004570 31 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 154686506 Common ypiB YpiB RBAM_020740 8 COG5582 COG5582, Uncharacterized conserved protein Function unknown 154687531 Common gapA GapA RBAM_031300 220 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 154686723 Nonpathogen sinI SinI RBAM_022920 1 None None None 154687542 Common - hypothetical protein RBAM_031410 121 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154687620 Common nagA NagA RBAM_032200 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 154687498 Common spaK SpaK RBAM_030970 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685342 Common ygaK YgaK RBAM_009070 48 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 154686287 Common ybcL YbcL RBAM_018550 185 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685697 Common xhlA XhlA RBAM_012640 2 None None None 154686456 Common yrdC YrdC RBAM_020240 112 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 154687658 Common flgM FlgM RBAM_032580 8 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 154686672 Common mmgE MmgE RBAM_022410 58 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 154685240 Common yflJ YflJ RBAM_007860 1 None None None 154685576 Common trpS TrpS RBAM_011420 233 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154688092 Common - hypothetical protein RBAM_036930 139 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686732 Common comGE ComGE RBAM_023010 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 154685592 Common yjbJ YjbJ RBAM_011580 182 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 154685996 Common thiN ThiN RBAM_015630 50 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 154687244 Common pgi Pgi RBAM_028430 210 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 154686418 Common msrA MsrA RBAM_019860 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 154687169 Common ytzC YtzC RBAM_027410 2 None None None 154685642 Common yjcS YjcS RBAM_012090 4 COG1359 COG1359, Uncharacterized conserved protein Function unknown 154686342 Common yocS YocS RBAM_019100 98 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 154685651 Common lacG LacG RBAM_012180 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 154687849 Nonpathogen albG AlbG RBAM_034500 1 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 154685457 Common hpr Hpr RBAM_010230 3 COG1846 MarR, Transcriptional regulators Transcription 154685348 Common ssuC SsuC RBAM_009130 198 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 154685092 Common ydiC YdiC RBAM_006370 190 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 154685418 Common yhdV YhdV RBAM_009840 13 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 154686609 Common yqkC YqkC RBAM_021780 2 None None None 154685255 Common - hypothetical protein RBAM_008010 30 COG5438 COG5438, Predicted multitransmembrane protein Function unknown 154687201 Common ythB YthB RBAM_027730 13 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 154686055 Common flhB FlhB RBAM_016220 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 154688028 Nonpathogen yxxG YxxG RBAM_036290 1 None None None 154685047 Common ydeK YdeK RBAM_005850 47 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 154685586 Common mecA MecA RBAM_011520 13 COG4862 MecA, Negative regulator of genetic competence, sporulation and motility Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion 154685852 Common ampS AmpS RBAM_014190 56 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 154684887 Common gdh Gdh RBAM_004180 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154684748 Common ybgH YbgH RBAM_002790 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 154685042 Common - two-component response regulator RBAM_005800 226 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154686180 Common yoaP YoaP RBAM_017470 7 COG0456 RimI, Acetyltransferases General function prediction only 154684919 Common ydaK YdaK RBAM_004500 105 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 154684721 Common yfiN1 YfiN1 RBAM_002520 31 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 154685844 Common yknZ YknZ RBAM_014110 194 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 154686271 Common yngI YngI RBAM_018380 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154687445 Common fhuD FhuD RBAM_030440 56 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 154687367 Common yurO YurO RBAM_029660 110 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 154684555 Common yabC YabC RBAM_000450 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 154687879 Nonpathogen - hypothetical protein RBAM_034800 2 None None None 154687486 Common ytmI YtmI RBAM_030850 7 COG0456 RimI, Acetyltransferases General function prediction only 154685832 Common ykuV YkuV RBAM_013990 68 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 154686197 Common - hypothetical protein RBAM_017640 1 None None None 154685437 Common yheA YheA RBAM_010030 18 COG3679 COG3679, Uncharacterized conserved protein Function unknown 154687078 Common sspA SspA RBAM_026500 5 None None None 154686022 Common rnhB RnhB RBAM_015890 214 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 154687715 Common ywrO YwrO RBAM_033150 74 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 154686481 Common nth Nth RBAM_020490 240 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 154687011 Common araL AraL RBAM_025830 104 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 154687776 Common ywnE YwnE RBAM_033770 156 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 154687132 Common ytlR YtlR RBAM_027040 81 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 154685944 Common ftsA FtsA RBAM_015110 182 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 154686558 Common resC ResC RBAM_021270 93 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 154685288 Common acoR AcoR RBAM_008340 178 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 154685878 Common pdhD PdhD RBAM_014450 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 154687176 Common - putative permease MDR type RBAM_027480 222 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154687471 Common yvgZ YvgZ RBAM_030700 106 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 154684541 Common yaaL YaaL RBAM_000280 4 None None None 154685867 Common mlnB MlnB RBAM_014340 212 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686553 Common serA SerA RBAM_021220 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 154687634 Common yvkB YvkB RBAM_032340 11 COG1309 AcrR, Transcriptional regulator Transcription 154685203 Common - hypothetical protein RBAM_007480 53 COG0778 NfnB, Nitroreductase Energy production and conversion 154687229 Common - hypothetical protein RBAM_028280 158 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 154685923 Common ylbK YlbK RBAM_014900 131 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 154686218 Common yneP YneP RBAM_017850 109 COG0824 FcbC, Predicted thioesterase General function prediction only 154686390 Common yosT YosT RBAM_019580 3 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 154684637 Common rplB RplB RBAM_001440 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 154684895 Common ycsD YcsD RBAM_004260 162 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 154687268 Common yufQ YufQ RBAM_028670 109 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 154688041 Common hutU HutU RBAM_036420 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 154688126 Common - hypothetical protein RBAM_037270 10 None None None 154686259 Common bioD BioD RBAM_018260 159 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 154687931 Common vpr Vpr RBAM_035320 135 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 154687455 Common - putative multidrug ABC transporter, ATPase component RBAM_030540 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154687216 Common yuaD YuaD RBAM_028140 5 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 154686822 Common yqeL YqeL RBAM_023920 199 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 154685003 Common ydeB YdeB RBAM_005410 82 COG1329 COG1329, Transcriptional regulators, similar to M. xanthus CarD Transcription 154684767 Common lmrB LmrB RBAM_002980 177 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154687518 Common - hypothetical protein RBAM_031170 1 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 154684697 Common ybbP YbbP RBAM_002280 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 154687230 Common tlpB TlpB RBAM_028290 155 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154686765 Common yqgC YqgC RBAM_023350 33 COG2839 COG2839, Uncharacterized protein conserved in bacteria Function unknown 154687050 Common ytzA YtzA RBAM_026220 48 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 154687703 Common ywtA YwtA RBAM_033030 9 None None None 154685312 Common yfhF YfhF RBAM_008580 112 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 154685326 Common yfhQ YfhQ RBAM_008720 232 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 154686988 Common ysiB YsiB RBAM_025600 171 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 154686615 Nonpathogen yqjX YqjX RBAM_021840 1 None None None 154685743 Common ydhD YdhD RBAM_013100 45 COG3858 COG3858, Predicted glycosyl hydrolase General function prediction only 154685660 Common yjgC YjgC RBAM_012270 215 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 154687887 Common ywfG YwfG RBAM_034880 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154684726 Common ybyB YbyB RBAM_002570 2 None None None 154688129 Common - hypothetical protein RBAM_037300 2 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 154687468 Common yvgW YvgW RBAM_030670 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 154684673 Common ybaL YbaL RBAM_001800 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 154687854 Common - putative transcriptional regulator RBAM_034550 59 COG1476 COG1476, Predicted transcriptional regulators Transcription 154685733 Common - hypothetical protein RBAM_013000 129 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154684779 Common ycdG YcdG RBAM_003100 165 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 154688187 Common yyaJ YyaJ RBAM_037920 200 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154684709 Common - putative ABC-type antimicrobial peptide transport system, ATPase RBAM_002400 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 154687895 Common rocC RocC RBAM_034960 161 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 154685395 Common yhdB YhdB RBAM_009610 3 None None None 154685447 Common yhaQ YhaQ RBAM_010130 249 COG4152 COG4152, ABC-type uncharacterized transport system, ATPase component General function prediction only 154687035 Common ytcD YtcD RBAM_026070 140 COG1733 COG1733, Predicted transcriptional regulators Transcription 154687546 Common yvbY YvbY RBAM_031450 75 COG1556 COG1556, Uncharacterized conserved protein Function unknown 154685281 Common - hypothetical protein RBAM_008270 1 None None None 154686497 Common ypjD YpjD RBAM_020650 25 COG1694 MazG, Predicted pyrophosphatase General function prediction only 154686370 Common ctpA CtpA RBAM_019380 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 154685018 Common - hypothetical protein RBAM_005560 36 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 154688119 Common - hypothetical protein RBAM_037200 202 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 154687162 Common ytrF YtrF RBAM_027340 139 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 154687921 Common ywdF YwdF RBAM_035220 160 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154687402 Common yusT YusT RBAM_030010 187 COG0583 LysR, Transcriptional regulator Transcription 154686439 Common cspD CspD RBAM_020070 182 COG1278 CspC, Cold shock proteins Transcription 154685432 Common sspB SspB RBAM_009980 13 None None None 154686851 Common manR ManR RBAM_024210 50 COG3711 BglG, Transcriptional antiterminator Transcription 154688102 Common - putative carbon monoxide dehydrogenase large subunit RBAM_037030 115 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 154685341 Common thiC ThiC RBAM_009060 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 154687721 Common cotB CotB RBAM_033210 2 None None None 154686404 Common yoqH YoqH RBAM_019720 1 None None None 154686808 Common grpE GrpE RBAM_023780 233 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 154684875 Common yclO YclO RBAM_004060 134 COG4605 CeuC, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 154686010 Common smc Smc RBAM_015770 215 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 154687947 Common ywcC YwcC RBAM_035480 24 COG1309 AcrR, Transcriptional regulator Transcription 154684548 Common yaaQ YaaQ RBAM_000380 20 COG3870 COG3870, Uncharacterized protein conserved in bacteria Function unknown 154688081 Common htpG HtpG RBAM_036820 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 154687972 Common dltC DltC RBAM_035730 12 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154687022 Common ysbB YsbB RBAM_025940 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 154686069 Common frr Frr RBAM_016360 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 154685125 Common cotA CotA RBAM_006700 89 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 154687767 Common nrgA NrgA RBAM_033680 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 154685058 Common expZ ExpZ RBAM_005960 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 154688162 Common - putative transcriptional regulator RBAM_037670 132 COG1802 GntR, Transcriptional regulators Transcription 154684707 Common - two-component response regulator RBAM_002380 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154685083 Common yvdS YvdS RBAM_006210 31 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154686164 Common - hypothetical protein RBAM_017310 15 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 154685175 Common yeeF2 YeeF2 RBAM_007200 2 None None None 154686523 Common menH MenH RBAM_020910 223 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154687395 Common yusM YusM RBAM_029940 135 COG0506 PutA, Proline dehydrogenase Amino acid transport and metabolism 154687651 Common hag Hag RBAM_032510 117 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 154687365 Common yurM YurM RBAM_029640 159 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 154685375 Nonpathogen yhcM YhcM RBAM_009410 1 None None None 154684730 Common glpT GlpT RBAM_002610 84 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 154686702 Common spoIIIAF SpoIIIAF RBAM_022710 5 None None None 154685956 Common ylmG YlmG RBAM_015230 72 COG0762 COG0762, Predicted integral membrane protein Function unknown 154687601 Common trxB TrxB RBAM_032010 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 154687616 Common yvoF YvoF RBAM_032160 171 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 154686753 Common yqzD YqzD RBAM_023230 1 None None None 154686318 Common yobS YobS RBAM_018860 11 COG1309 AcrR, Transcriptional regulator Transcription 154687344 Common lipA LipA RBAM_029430 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 154687994 Common yxeI YxeI RBAM_035950 53 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 154686305 Common yoxB YoxB RBAM_018730 6 None None None 154685302 Common - hypothetical protein RBAM_008480 171 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 154687965 Common epr Epr RBAM_035660 151 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 154685683 Common xkdA XkdA RBAM_012500 3 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 154688017 Common citH CitH RBAM_036180 58 COG2851 CitM, H+/citrate symporter Energy production and conversion 154685567 Common fabHA FabHA RBAM_011330 209 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 154687908 Common spsI SpsI RBAM_035090 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 154685634 Common - hypothetical protein RBAM_012010 1 None None None 154684735 Nonpathogen - hypothetical protein RBAM_002660 1 None None None 154687478 Common ytnJ YtnJ RBAM_030770 69 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154688142 Common dnaC DnaC RBAM_037470 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 154687151 Common - hypothetical protein RBAM_027230 60 COG0456 RimI, Acetyltransferases General function prediction only 154686978 Common sdhB SdhB RBAM_025500 207 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 154686927 Common obg Obg RBAM_024970 249 COG0536 Obg, Predicted GTPase General function prediction only 154686878 Common yrzB YrzB RBAM_024480 12 COG3906 COG3906, Uncharacterized protein conserved in bacteria Function unknown 154685984 Common gmk Gmk RBAM_015510 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 154688208 Common jag Jag RBAM_038130 71 COG1847 Jag, Predicted RNA-binding protein General function prediction only 154686376 Common yodL YodL RBAM_019440 2 None None None 154687294 Common yukA YukA RBAM_028930 195 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 154688047 Common deoC DeoC RBAM_036480 138 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 154688167 Common - hypothetical protein RBAM_037720 77 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 154686661 Common bmrU BmrU RBAM_022300 114 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 154686090 Common spoVFA SpoVFA RBAM_016570 15 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 154686234 Common exuT ExuT RBAM_018010 230 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 154684539 Common yaaK YaaK RBAM_000260 181 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 154685504 Common yhjE YhjE RBAM_010700 24 COG0398 COG0398, Uncharacterized conserved protein Function unknown 154686425 Common yplP YplP RBAM_019930 163 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 154687839 Common narI NarI RBAM_034400 58 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 154687840 Common narJ NarJ RBAM_034410 58 COG2180 NarJ, Nitrate reductase delta subunit Energy production and conversion 154685542 Common yitS YitS RBAM_011080 58 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 154685978 Common sirB SirB RBAM_015450 71 COG2138 COG2138, Uncharacterized conserved protein Function unknown 154686779 Common yqfN YqfN RBAM_023490 30 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 154686004 Common fapR FapR RBAM_015710 16 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 154685267 Common yfkH YfkH RBAM_008130 164 COG1295 Rbn, Predicted membrane protein Function unknown 154688050 Common yxeG YxeG RBAM_036510 1 None None None 154684836 Nonpathogen comS ComS RBAM_003670 1 None None None 154688189 Common ccpB CcpB RBAM_037940 126 COG1609 PurR, Transcriptional regulators Transcription 154684864 Common yxeP YxeP RBAM_003950 173 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 154685146 Common purF PurF RBAM_006910 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 154685421 Common yhdY YhdY RBAM_009870 198 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 154686785 Common yqzB YqzB RBAM_023550 26 COG0517 COG0517, FOG: CBS domain General function prediction only 154685472 Common yhgD YhgD RBAM_010380 116 COG1309 AcrR, Transcriptional regulator Transcription 154685615 Common - hypothetical protein RBAM_011810 1 None None None 154685353 Common yhbA YhbA RBAM_009190 136 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 154686707 Common spoIIIAA SpoIIIAA RBAM_022760 33 COG3854 SpoIIIAA, ncharacterized protein conserved in bacteria Function unknown 154687975 Common licH LicH RBAM_035760 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 154685139 Common purE PurE RBAM_006840 233 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 154685754 Common ykoY YkoY RBAM_013210 80 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 154685999 Common yloU YloU RBAM_015660 38 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 154686595 Common fur Fur RBAM_021640 193 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 154686958 Common clpX ClpX RBAM_025280 224 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 154687490 Common smpB SmpB RBAM_030890 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 154685484 Common aprE AprE RBAM_010500 150 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 154687785 Common rapB RapB RBAM_033860 4 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 154687388 Common yusG YusG RBAM_029870 2 None None None 154686845 Nonpathogen - hypothetical protein RBAM_024150 1 None None None 154687693 Common gerBB GerBB RBAM_032930 37 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 154685460 Common serC SerC RBAM_010260 117 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 154686870 Common yrrS YrrS RBAM_024400 4 None None None 154686338 Common dhaS DhaS RBAM_019060 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154687407 Common yusV YusV RBAM_030060 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 154686569 Common ribTD RibTD RBAM_021380 5 COG0456 RimI, Acetyltransferases General function prediction only 154685106 Nonpathogen - hypothetical protein RBAM_006510 1 None None None 154686049 Common fliY FliY RBAM_016160 127 COG1776 CheC, Chemotaxis protein CheC, inhibitor of MCP methylation Cell motility and secretion / Signal transduction mechanisms 154685629 Common - hypothetical protein RBAM RBAM_011960 6 None None None 154687425 Common yvqG YvqG RBAM_030240 8 COG3595 COG3595, Uncharacterized conserved protein Function unknown 154687378 Common csd Csd RBAM_029770 240 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 154687340 Common yutG YutG RBAM_029390 13 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 154684620 Common rplK RplK RBAM_001270 248 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 154684655 Common adk Adk RBAM_001620 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 154686820 Common comER ComER RBAM_023900 166 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 154686560 Common resA ResA RBAM_021290 181 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 154686879 Common yrrK YrrK RBAM_024490 184 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 154687602 Common cwlO CwlO RBAM_032020 131 COG3883 COG3883, Uncharacterized protein conserved in bacteria Function unknown 154687279 Nonpathogen comX ComX RBAM_028780 1 None None None 154687414 Common cssS CssS RBAM_030130 207 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154686583 Common spoVAD SpoVAD RBAM_021520 15 None None None 154686191 Nonpathogen - hypothetical protein RBAM_017580 1 None None None 154686982 Common lysC LysC RBAM_025540 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 154685224 Common yfmB YfmB RBAM_007700 1 None None None 154686650 Common yqzJ YqzJ RBAM_022190 1 None None None 154685818 Common ykuF YkuF RBAM_013850 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686017 Common ylqD YlqD RBAM_015840 7 None None None 154685786 Common ykvN YkvN RBAM_013530 146 COG1733 COG1733, Predicted transcriptional regulators Transcription 154685271 Common yfkC YfkC RBAM_008170 120 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 154685675 Common uxaA UxaA RBAM_012420 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 154687071 Common ytfJ YtfJ RBAM_026430 15 COG3874 COG3874, Uncharacterized conserved protein Function unknown 154687409 Common yusX YusX RBAM_030080 89 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 154688173 Common ydeO YdeO RBAM_037780 75 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154685051 Common adhB AdhB RBAM_005890 200 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154686109 Common pgsA PgsA RBAM_016760 205 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 154685063 Common - putative beta-ketoacyl-acyl carrier protein synthase II RBAM_006010 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154685494 Common comK ComK RBAM_010600 5 COG4903 ComK, Genetic competence transcription factor Transcription 154687862 Common ywhE YwhE RBAM_034630 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 154684803 Common ycgH YcgH RBAM_003340 148 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 154687208 Common menD MenD RBAM_027800 108 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 154685204 Nonpathogen - hypothetical protein RBAM_007490 1 None None None 154685307 Common yfiX YfiX RBAM_008530 54 COG2898 COG2898, Uncharacterized conserved protein Function unknown 154686062 Common cheC CheC RBAM_016290 42 COG1776 CheC, Chemotaxis protein CheC, inhibitor of MCP methylation Cell motility and secretion / Signal transduction mechanisms 154685130 Common yebA YebA RBAM_006750 95 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 154685802 Common splA SplA RBAM_013690 2 None None None 154687142 Common ytgP YtgP RBAM_027140 99 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 154684967 Common alr Alr RBAM_004980 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 154684625 Common rpoB RpoB RBAM_001320 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 154686158 Common glnR GlnR RBAM_017250 60 COG0789 SoxR, Predicted transcriptional regulators Transcription 154685116 Common ydjI YdjI RBAM_006610 37 COG4260 COG4260, Putative virion core protein (lumpy skin disease virus) Function unknown 154685777 Common motB MotB RBAM_013440 140 COG1360 MotB, Flagellar motor protein Cell motility and secretion 154685762 Common ykzE YkzE RBAM_013290 1 None None None 154687277 Common comA ComA RBAM_028760 174 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154685248 Nonpathogen cotP CotP RBAM_007940 1 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 154686331 Nonpathogen - hypothetical protein RBAM_018990 1 None None None 154687670 Common tuaG TuaG RBAM_032700 212 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154686016 Common ylqC YlqC RBAM_015830 69 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 154685862 Common ykrA YkrA RBAM_014290 124 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154684530 Common pdxT PdxT RBAM_000150 92 COG0311 PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis Coenzyme metabolism 154685485 Common yhfQ YhfQ RBAM_010510 81 COG4594 FecB, ABC-type Fe3+-citrate transport system, periplasmic component Inorganic ion transport and metabolism 154685605 Common thiF ThiF RBAM_011710 222 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 154687894 Common - putative drug resistance transporter RBAM_034950 203 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154687563 Common epsF EpsF RBAM_031620 213 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154686660 Common yqiW YqiW RBAM_022290 11 None None None 154685939 Common murD MurD RBAM_015060 209 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 154686155 Common spoVK SpoVK RBAM_017220 160 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 154687124 Common ytoQ YtoQ RBAM_026960 13 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 154687096 Nonpathogen - hypothetical protein RBAM_026680 2 None None None 154685901 Common ylaL YlaL RBAM_014680 4 None None None 154685521 Common gerPC GerPC RBAM_010870 2 None None None 154686241 Common - hypothetical protein RBAM_018080 1 None None None 154687556 Common epsM EpsM RBAM_031550 207 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 154685925 Common ylbM YlbM RBAM_014920 26 COG1323 COG1323, Predicted nucleotidyltransferase General function prediction only 154686913 Common queA QueA RBAM_024830 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 154687098 Common - Replicative DNA helicase dnaC RBAM_026700 204 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 154685532 Common yisR YisR RBAM_010980 116 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 154686883 Common glnQ GlnQ RBAM_024530 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 154685652 Common lacR LacR RBAM_012190 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 154687812 Common spoIIR SpoIIR RBAM_034130 15 None None None 154687806 Common ywlG YwlG RBAM_034070 16 COG4475 COG4475, Uncharacterized protein conserved in bacteria Function unknown 154687811 Common ywlB YwlB RBAM_034120 1 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 154687060 Common ytpI YtpI RBAM_026320 3 None None None 154685194 Common yetO YetO RBAM_007390 130 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 154685614 Common yjcA YjcA RBAM_011800 2 None None None 154684776 Common ycdD YcdD RBAM_003070 18 COG5632 COG5632, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154684682 Common ybaS YbaS RBAM_002080 90 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 154686453 Common - hypothetical protein RBAM_020210 82 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154686682 Nonpathogen - hypothetical protein RBAM_022510 1 None None None 154687697 Common ywtF YwtF RBAM_032970 61 COG1316 LytR, Transcriptional regulator Transcription 154688008 Common pepT PepT RBAM_036090 61 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 154686309 Common yoaE YoaE RBAM_018770 182 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 154684854 Common yclG YclG RBAM_003850 18 COG3420 NosD, Nitrous oxidase accessory protein Inorganic ion transport and metabolism 154686075 Common polC PolC RBAM_016420 216 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 154684751 Common ycbB YcbB RBAM_002820 171 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 154684794 Common amhX AmhX RBAM_003250 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 154684846 Common yckJ YckJ RBAM_003770 176 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154684996 Common - putative oxidoreductase (short-chain dehydrogenase/reductase family) RBAM_005340 233 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 154685358 Common yhbF YhbF RBAM_009240 4 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 154685790 Common - hypothetical protein RBAM_013570 4 COG4873 COG4873, Uncharacterized protein conserved in bacteria Function unknown 154685185 Common yetG YetG RBAM_007300 3 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 154684953 Common ydbL YdbL RBAM_004840 1 None None None 154685475 Common yhfE YhfE RBAM_010410 82 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 154687983 Common - iron compound ABC transporter, substrate-binding protein RBAM_035840 53 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 154687768 Common nrgB NrgB RBAM_033690 186 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 154688136 Common yycI YycI RBAM_037370 7 COG4853 COG4853, Uncharacterized protein conserved in bacteria Function unknown 154684556 Common abrB AbrB RBAM_000460 16 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 154685908 Common ctaC CtaC RBAM_014750 134 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 154686905 Common yrvC YrvC RBAM_024750 24 COG0490 COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels Inorganic ion transport and metabolism 154687006 Common abfA AbfA RBAM_025780 32 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 154685560 Common yjzC YjzC RBAM_011260 3 None None None 154687830 Common pyrG PyrG RBAM_034310 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 154686801 Common rpsU RpsU RBAM_023710 97 None None None 154684573 Common yabK YabK RBAM_000630 3 None None None 154686306 Common yoaB YoaB RBAM_018740 17 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154684527 Common guaB GuaB RBAM_000120 242 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 154686284 Common - site-specific recombinase (phage integrase family) RBAM_018520 125 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 154685467 Common yhgC YhgC RBAM_010330 25 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 154684844 Common yczE YczE RBAM_003750 32 COG2364 COG2364, Predicted membrane protein Function unknown 154687066 Common argG ArgG RBAM_026380 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 154688164 Common yfmI1 YfmI1 RBAM_037690 75 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154688003 Common msmX MsmX RBAM_036040 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 154687154 Common ytvB YtvB RBAM_027260 1 None None None 154685724 Common ykkD YkkD RBAM_012910 12 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154685960 Common ylyA YlyA RBAM_015270 4 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 154687584 Common - putative transcriptional regulator RBAM_031840 131 COG1609 PurR, Transcriptional regulators Transcription 154685525 Common yisK YisK RBAM_010910 180 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 154687912 Common spsD SpsD RBAM_035130 9 COG0456 RimI, Acetyltransferases General function prediction only 154685316 Common ybfJ YbfJ RBAM_008620 1 COG2351 COG2351, Transthyretin-like protein General function prediction only 154686093 Common dapG DapG RBAM_016600 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 154686698 Common accC AccC RBAM_022670 229 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 154686270 Common yngH YngH RBAM_018370 237 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 154684904 Nonpathogen yczI YczI RBAM_004350 1 None None None 154685712 Common dppC DppC RBAM_012790 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 154684689 Common ybbD YbbD RBAM_002150 180 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 154687507 Common yvaV YvaV RBAM_031060 11 COG1510 COG1510, Predicted transcriptional regulators Transcription 154688036 Common - hypothetical protein RBAM_036370 154 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 154687677 Common lytC LytC RBAM_032770 187 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154688063 Common mrsK2 MrsK2 RBAM_036640 208 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685187 Common yetI YetI RBAM_007320 32 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154685753 Common ykoX YkoX RBAM_013200 101 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 154687497 Common yvaP YvaP RBAM_030960 152 COG1733 COG1733, Predicted transcriptional regulators Transcription 154687437 Common yvrH2 YvrH2 RBAM_030360 1 None None None 154687056 Common dnaE DnaE RBAM_026280 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 154686536 Common cmk Cmk RBAM_021040 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 154686694 Common xseA XseA RBAM_022630 203 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 154685558 Common carB CarB RBAM_011240 238 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 154686261 Common bioA BioA RBAM_018280 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 154685599 Common yjbQ YjbQ RBAM_011650 212 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 154685547 Common yitU YitU RBAM_011130 132 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154685696 Nonpathogen xepA XepA RBAM_012630 1 None None None 154686614 Common yqjW YqjW RBAM_021830 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 154686362 Common yodB YodB RBAM_019300 145 COG1733 COG1733, Predicted transcriptional regulators Transcription 154687272 Common mrpD MrpD RBAM_028710 210 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 154686747 Common glcK GlcK RBAM_023170 158 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 154687012 Common araD AraD RBAM_025840 120 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 154685390 Common glpD GlpD RBAM_009560 150 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 154687515 Common yvbJ YvbJ RBAM_031140 8 COG4640 COG4640, Predicted membrane protein Function unknown 154685085 Common yveA YveA RBAM_006230 179 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154684766 Common ycbU YcbU RBAM_002970 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 154685918 Common ylbF YlbF RBAM_014850 7 COG3679 COG3679, Uncharacterized conserved protein Function unknown 154687618 Common lgt Lgt RBAM_032180 176 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 154685669 Common yjlC YjlC RBAM_012360 2 COG2427 COG2427, Uncharacterized conserved protein Function unknown 154686384 Common kamA KamA RBAM_019520 127 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 154685893 Common ylaD YlaD RBAM_014600 4 COG5660 COG5660, Predicted integral membrane protein Function unknown 154684976 Common sigB SigB RBAM_005070 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154687091 Nonpathogen - hypothetical protein RBAM_026630 1 None None None 154686325 Common yocC YocC RBAM_018930 1 None None None 154687112 Common ytxE YtxE RBAM_026840 140 COG1360 MotB, Flagellar motor protein Cell motility and secretion 154686917 Nonpathogen - hypothetical protein RBAM_024870 1 None None None 154686474 Common yppE YppE RBAM_020420 4 None None None 154684715 Common ybxG YbxG RBAM_002460 142 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 154686793 Common yqfF YqfF RBAM_023630 56 COG1480 COG1480, Predicted membrane-associated HD superfamily hydrolase General function prediction only 154687752 Common ywpH YwpH RBAM_033530 213 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 154686369 Common yydK YydK RBAM_019370 107 COG2188 PhnF, Transcriptional regulators Transcription 154686894 Common yrvN YrvN RBAM_024640 228 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 154686834 Common spoIIIC SpoIIIC RBAM_024040 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154687125 Common ytoP YtoP RBAM_026970 84 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 154686438 Common ugtP UgtP RBAM_020060 52 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 154685874 Common mlnI MlnI RBAM_014410 136 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 154684595 Common pabC PabC RBAM_000870 185 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 154688025 Common yxiI YxiI RBAM_036260 2 None None None 154684602 Common mcsA McsA RBAM_001090 21 COG3880 COG3880, Uncharacterized protein with conserved CXXC pairs Function unknown 154687299 Common ald Ald RBAM_028980 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 154685152 Common yerB YerB RBAM_006970 14 None None None 154686778 Common yqfO YqfO RBAM_023480 106 COG3323 COG3323, Uncharacterized protein conserved in bacteria Function unknown 154686298 Nonpathogen rtp Rtp RBAM_018660 2 None None None 154684822 Common nasB NasB RBAM_003530 214 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 154686291 Common yogA YogA RBAM_018590 188 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 154687288 Common yueG YueG RBAM_028870 1 None None None 154687553 Common yvfG YvfG RBAM_031520 1 None None None 154686596 Common spoIIM SpoIIM RBAM_021650 17 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 154684664 Common ybaE YbaE RBAM_001710 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 154685215 Common yfmS YfmS RBAM_007600 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154685968 Common pyrAB PyrAB RBAM_015350 237 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 154685230 Common - collagen like triple helix protein with GXT repeats RBAM_007760 3 None None None 154687666 Common yvyE YvyE RBAM_032660 133 COG1739 COG1739, Uncharacterized conserved protein Function unknown 154684585 Common yabT YabT RBAM_000770 6 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 154687797 Common atpG AtpG RBAM_033980 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 154684799 Common mdr Mdr RBAM_003300 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685237 Common yflM YflM RBAM_007830 11 COG4362 COG4362, Nitric oxide synthase, oxygenase domain Inorganic ion transport and metabolism / Amino acid transport and metabolism 154686443 Common ypeP YpeP RBAM_020110 3 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 154686114 Common ymdB YmdB RBAM_016810 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 154686122 Common mutL MutL RBAM_016890 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 154686996 Common yshA YshA RBAM_025680 14 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 154686409 Common - putative two-component response regulator RBAM_019770 211 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154688099 Common fbp Fbp RBAM_037000 18 COG3855 Fbp, Uncharacterized protein conserved in bacteria Carbohydrate transport and metabolism 154684568 Common spoVG SpoVG RBAM_000580 24 COG2088 SpoVG, Uncharacterized protein, involved in the regulation of septum location Cell envelope biogenesis, outer membrane 154685283 Common yfjM YfjM RBAM_008290 4 None None None 154685866 Common mlnA MlnA RBAM_014330 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 154687001 Common sspI SspI RBAM_025730 4 None None None 154687163 Common ytrE YtrE RBAM_027350 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 154685684 Common xre Xre RBAM_012510 28 COG1396 HipB, Predicted transcriptional regulators Transcription 154686431 Common ypiP YpiP RBAM_019990 21 COG2521 COG2521, Predicted archaeal methyltransferase General function prediction only 154685335 Common ygaF YgaF RBAM_008810 227 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 154688155 Common yybS YybS RBAM_037600 13 COG4241 COG4241, Predicted membrane protein Function unknown 154686086 Common pnpA PnpA RBAM_016530 239 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 154685015 Common ybfB YbfB RBAM_005530 100 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 154686281 Common yoxA YoxA RBAM_018480 45 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 154687338 Common hom Hom RBAM_029370 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 154687735 Common - hypothetical protein RBAM_033350 5 None None None 154688031 Common pelB PelB RBAM_036320 15 COG3866 PelB, Pectate lyase Carbohydrate transport and metabolism 154685585 Common yjbE YjbE RBAM_011510 82 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 154687823 Common rho Rho RBAM_034240 201 COG1158 Rho, Transcription termination factor Transcription 154684812 Common ycgL YcgL RBAM_003430 21 COG3541 COG3541, Predicted nucleotidyltransferase General function prediction only 154686220 Common yneR YneR RBAM_017870 7 COG4841 COG4841, Uncharacterized protein conserved in bacteria Function unknown 154686643 Common yqjM YqjM RBAM_022120 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 154686238 Nonpathogen - hypothetical protein RBAM_018050 2 None None None 154687759 Common flhO FlhO RBAM_033600 124 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 154688087 Common yxbF YxbF RBAM_036880 20 COG1309 AcrR, Transcriptional regulator Transcription 154686344 Common odhB OdhB RBAM_019120 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 154687357 Nonpathogen - hypothetical protein RBAM_029560 1 None None None 154685252 Common treA TreA RBAM_007980 163 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 154685620 Common blm Blm RBAM_011860 24 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154687530 Common pgk Pgk RBAM_031290 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 154687339 Common yutH YutH RBAM_029380 4 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 154687479 Common ytnI YtnI RBAM_030780 4 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 154687712 Common rbsC RbsC RBAM_033120 121 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 154686304 Nonpathogen yoxC YoxC RBAM_018720 1 COG4768 COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain General function prediction only 154688032 Common yxxF YxxF RBAM_036330 42 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 154684722 Nonpathogen - hypothetical protein RBAM_002530 1 None None None 154687643 Common yvjA YvjA RBAM_032430 48 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154688001 Common cimH CimH RBAM_036020 30 COG3493 CitS, Na+/citrate symporter Energy production and conversion 154685268 Common yfkF YfkF RBAM_008140 194 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685043 Common - two-component sensor histidine kinase RBAM_005810 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154684736 Common - hypothetical protein RBAM_002670 4 COG1476 COG1476, Predicted transcriptional regulators Transcription 154685983 Common ylzA YlzA RBAM_015500 33 COG2052 COG2052, Uncharacterized protein conserved in bacteria Function unknown 154684863 Common yxeO YxeO RBAM_003940 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 154686770 Common yqfW YqfW RBAM_023400 9 COG5663 COG5663, Uncharacterized conserved protein Function unknown 154685551 Common yitY YitY RBAM_011170 141 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 154686788 Common recO RecO RBAM_023580 89 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 154686377 Common yodM YodM RBAM_019450 107 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 154686214 Common yneN YneN RBAM_017810 188 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 154685119 Common sigV SigV RBAM_006640 160 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154685134 Common pbuG PbuG RBAM_006790 136 COG2252 COG2252, Permeases General function prediction only 154685940 Common spoVE SpoVE RBAM_015070 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 154686550 Common fer Fer RBAM_021190 7 COG1141 Fer, Ferredoxin Energy production and conversion 154685201 Common - hypothetical protein RBAM_007460 7 None None None 154687043 Common phoP PhoP RBAM_026150 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154687978 Common licB LicB RBAM_035790 31 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 154687310 Common yuiF YuiF RBAM_029090 29 COG2056 COG2056, Predicted permease General function prediction only 154687635 Common yvkA YvkA RBAM_032350 202 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686444 Common ypdP YpdP RBAM_020120 113 COG1738 COG1738, Uncharacterized conserved protein Function unknown 154686713 Common yqhP YqhP RBAM_022820 2 None None None 154687387 Common yusF YusF RBAM_029860 11 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 154685929 Common ylbP YlbP RBAM_014960 3 COG3660 COG3660, Predicted nucleoside-diphosphate-sugar epimerase Cell envelope biogenesis, outer membrane 154687086 Common ytrP YtrP RBAM_026580 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 154688016 Common katE KatE RBAM_036170 129 COG0753 KatE, Catalase Inorganic ion transport and metabolism 154685350 Common rpsNB RpsNB RBAM_009150 212 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 154685568 Common fabF FabF RBAM_011340 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154686137 Common nucB NucB RBAM_017040 2 None None None 154688072 Common iolF IolF RBAM_036730 40 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685950 Common ylmA YlmA RBAM_015170 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 154687826 Common tal Tal RBAM_034270 151 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 154687944 Common galT GalT RBAM_035450 14 COG4468 GalT, Galactose-1-phosphate uridyltransferase Carbohydrate transport and metabolism 154687352 Common pucR PucR RBAM_029510 36 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 154685471 Common hemY HemY RBAM_010370 53 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 154687102 Nonpathogen - hypothetical protein RBAM_026740 1 None None None 154686398 Nonpathogen yotN YotN RBAM_019660 1 None None None 154685913 Common ylbA YlbA RBAM_014800 3 None None None 154684651 Common rpsE RpsE RBAM_001580 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 154685887 Common ykzC YkzC RBAM_014540 1 COG0456 RimI, Acetyltransferases General function prediction only 154684547 Common tmk Tmk RBAM_000370 231 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 154684614 Common yacO YacO RBAM_001210 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 154687929 Common sacT SacT RBAM_035300 29 COG3711 BglG, Transcriptional antiterminator Transcription 154685872 Common mlnG MlnG RBAM_014390 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686566 Common scpB ScpB RBAM_021350 153 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 154686977 Common ysmA YsmA RBAM_025490 38 COG0824 FcbC, Predicted thioesterase General function prediction only 154686196 Common yndM YndM RBAM_017630 4 None None None 154684727 Common ybeC YbeC RBAM_002580 193 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154685012 Common - hypothetical protein RBAM RBAM_005500 3 None None None 154686987 Common etfB EtfB RBAM_025590 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 154685782 Common ykvJ YkvJ RBAM_013490 176 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 154686578 Common ypuA YpuA RBAM_021470 12 COG4086 COG4086, Predicted secreted protein Function unknown 154687720 Common ywrJ YwrJ RBAM_033200 2 None None None 154684760 Common ycbP YcbP RBAM_002910 4 None None None 154687170 Common nrsF NrsF RBAM_027420 218 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154685998 Common rpmB RpmB RBAM_015650 79 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 154686854 Common - putative HTH-type transcriptional regulator RBAM_024240 183 COG0583 LysR, Transcriptional regulator Transcription 154685702 Common pit Pit RBAM_012690 169 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 154685305 Common yfiU YfiU RBAM_008510 211 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685025 Common ykkA YkkA RBAM_005630 2 None None None 154685374 Common yhcL YhcL RBAM_009400 150 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 154686533 Common yphA YphA RBAM_021010 2 None None None 154686722 Common yqhG YqhG RBAM_022910 3 None None None 154686355 Common yojF YojF RBAM_019230 5 None None None 154687512 Common yvbF YvbF RBAM_031110 9 COG1510 COG1510, Predicted transcriptional regulators Transcription 154686401 Nonpathogen yorC YorC RBAM_019690 1 None None None 154684859 Common yxeK YxeK RBAM_003900 70 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154684839 Common - hypothetical protein RBAM_003700 167 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154686246 Common yvrH YvrH RBAM_018130 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154686860 Common yrhG YrhG RBAM_024300 98 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 154687291 Common yueD YueD RBAM_028900 228 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154684874 Common yclN YclN RBAM_004050 190 COG4606 CeuB, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 154685299 Common padR PadR RBAM_008450 43 COG1695 COG1695, Predicted transcriptional regulators Transcription 154685218 Common yfmR YfmR RBAM_007630 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 154685340 Common ygaJ YgaJ RBAM_009050 20 COG3340 PepE, Peptidase E Amino acid transport and metabolism 154687501 Common spaE SpaE RBAM_031000 6 COG4200 COG4200, Uncharacterized protein conserved in bacteria Function unknown 154686505 Common ypiF YpiF RBAM_020730 3 None None None 154687059 Common ytqI YtqI RBAM_026310 80 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 154688190 Common exoA ExoA RBAM_037950 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 154686489 Common panC PanC RBAM_020570 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 154684708 Common - two-component sensor histidine kinase RBAM_002390 201 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685260 Common - putative Shikimate dehydrogenase RBAM_008060 221 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 154685449 Common yhaO YhaO RBAM_010150 85 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 154684740 Common ybfM YbfM RBAM_002710 171 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 154686746 Common yqgT YqgT RBAM_023160 12 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 154686750 Common yqgO YqgO RBAM_023200 1 None None None 154687322 Common - putative ABC-transporter ATP-binding protein RBAM_029210 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154687508 Common opuCD OpuCD RBAM_031070 174 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 154687604 Common - putative two-component sensor histidine kinase RBAM_032040 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685543 Common yitT YitT RBAM_011090 78 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154687194 Common dps Dps RBAM_027660 146 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 154686923 Common nifS NifS RBAM_024930 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 154685019 Nonpathogen - hypothetical protein RBAM_005570 1 None None None 154685892 Common ylaC YlaC RBAM_014590 175 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154686319 Common yobT YobT RBAM_018870 131 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154685099 Common tatCy TatCy RBAM_006440 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 154687551 Common yvfH YvfH RBAM_031500 104 COG1620 LldP, L-lactate permease Energy production and conversion 154686294 Common gltA GltA RBAM_018620 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 154685974 Common cysP CysP RBAM_015410 122 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 154685668 Common yjlB YjlB RBAM_012350 20 COG4297 COG4297, Uncharacterized protein containing double-stranded beta helix domain Function unknown 154684520 Common dnaN DnaN RBAM_000020 216 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 154685057 Common - putative glutamine amidotransferase RBAM_005950 121 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 154684975 Common rsbW RsbW RBAM_005060 47 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 154686038 Common fliG FliG RBAM_016050 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 154686045 Common flgE FlgE RBAM_016120 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 154686253 Common yxjF YxjF RBAM_018200 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154684698 Common ybbR YbbR RBAM_002290 24 COG4856 COG4856, Uncharacterized protein conserved in bacteria Function unknown 154685048 Common ydeL YdeL RBAM_005860 171 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 154685153 Common yerC YerC RBAM_006980 20 COG4496 COG4496, Uncharacterized protein conserved in bacteria Function unknown 154685478 Common yhfI YhfI RBAM_010440 96 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 154684534 Common dgk Dgk RBAM_000200 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 154687245 Common - hypothetical protein RBAM_028440 106 COG0431 COG0431, Predicted flavoprotein General function prediction only 154686233 Common kdgR KdgR RBAM_018000 129 COG1609 PurR, Transcriptional regulators Transcription 154688145 Common yycC YycC RBAM_037500 2 None None None 154684888 Common ycnI YcnI RBAM_004190 19 COG4549 COG4549, Uncharacterized protein conserved in bacteria Function unknown 154685167 Common yerQ YerQ RBAM_007120 120 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 154687487 Common ytlI YtlI RBAM_030860 191 COG0583 LysR, Transcriptional regulator Transcription 154687472 Common yvaA YvaA RBAM_030710 184 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 154686737 Common yqxL YqxL RBAM_023060 102 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 154686117 Common kbl Kbl RBAM_016840 191 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 154686258 Common bioB BioB RBAM_018250 183 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 154685847 Common fruA FruA RBAM_014140 142 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 154687900 Common - two-component response regulator RBAM_035010 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154685989 Common fmt Fmt RBAM_015560 222 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 154687685 Common tagF TagF RBAM_032850 33 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 154685258 Common yfkM YfkM RBAM_008040 158 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 154687368 Common yurP YurP RBAM_029670 193 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 154685144 Common purQ PurQ RBAM_006890 232 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 154685635 Common yqcG YqcG RBAM_012020 5 COG5444 COG5444, Uncharacterized conserved protein Function unknown 154686020 Common rplS RplS RBAM_015870 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 154684785 Common yceD YceD RBAM_003160 31 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 154685649 Common lacE LacE RBAM_012160 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 154685965 Common pyrB PyrB RBAM_015320 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 154686719 Common gcvPA GcvPA RBAM_022880 172 COG0403 GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain Amino acid transport and metabolism 154685004 Common yrkD YrkD RBAM_005420 91 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 154686545 Common ypbF YpbF RBAM_021140 2 None None None 154686810 Common hemN HemN RBAM_023800 212 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 154687375 Common csn Csn RBAM_029740 6 None None None 154685577 Common oppA OppA RBAM_011430 208 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 154684850 Common yclC YclC RBAM_003810 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 154685208 Common yfnG YfnG RBAM_007530 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 154686902 Common apt Apt RBAM_024720 180 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 154685273 Common yfjT YfjT RBAM_008190 2 None None None 154684999 Common - putative transcriptional regulator RBAM_005370 144 COG1733 COG1733, Predicted transcriptional regulators Transcription 154687456 Common - putative multidrug ABC transporter, permease RBAM_030550 14 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 154684694 Common ybbK YbbK RBAM_002200 64 COG1683 COG1683, Uncharacterized conserved protein Function unknown 154686511 Common trpA TrpA RBAM_020790 215 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 154686482 Common dnaD DnaD RBAM_020500 21 COG3935 DnaD, Putative primosome component and related proteins DNA replication, recombination, and repair 154687795 Common atpC AtpC RBAM_033960 183 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 154688104 Common - putative xanthine dehydrogenase RBAM_037050 110 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 154684619 Common nusG NusG RBAM_001260 215 COG0250 NusG, Transcription antiterminator Transcription 154687534 Common araR AraR RBAM_031330 145 COG1609 PurR, Transcriptional regulators Transcription 154687519 Common - hypothetical protein RBAM_031180 55 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 154687215 Common yuaE YuaE RBAM_028130 3 None None None 154685524 Common yisI YisI RBAM_010900 1 None None None 154686963 Common leuB LeuB RBAM_025330 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 154685953 Common ylmD YlmD RBAM_015200 179 COG1496 COG1496, Uncharacterized conserved protein Function unknown 154685406 Common yhdG YhdG RBAM_009720 182 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154686102 Common - hypothetical protein RBAM_016690 97 COG2409 COG2409, Predicted drug exporters of the RND superfamily General function prediction only 154686310 Common yoaF YoaF RBAM_018780 1 None None None 154684647 Common rpsN RpsN RBAM_001540 189 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 154685756 Common ykrI YkrI RBAM_013230 18 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 154686170 Common pps Pps RBAM_017370 162 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 154686561 Common rluB RluB RBAM_021300 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 154686388 Common yodS YodS RBAM_019560 91 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 154687390 Common yusI YusI RBAM_029890 81 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 154685922 Common ylbJ YlbJ RBAM_014890 20 COG3314 COG3314, Uncharacterized protein conserved in bacteria Function unknown 154687952 Common ywbN YwbN RBAM_035530 41 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 154685581 Common oppF OppF RBAM_011470 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 154684710 Common - putative ABC-type transport system,permease RBAM_002410 17 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 154687624 Common yvnB YvnB RBAM_032240 14 COG1409 Icc, Predicted phosphohydrolases General function prediction only 154687920 Common ung Ung RBAM_035210 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 154685535 Common yitI YitI RBAM_011010 17 None None None 154686300 Common - transposase RBAM RBAM_018680 2 None None None 154686498 Common ypjC YpjC RBAM_020660 80 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154686500 Common ypjB YpjB RBAM_020680 2 None None None 154686628 Common dfnJ DfnJ RBAM_021970 225 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686146 Common miaA MiaA RBAM_017130 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 154685347 Common ssuA SsuA RBAM_009120 124 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 154685415 Common - putative beta-ketoacyl synthase RBAM_009810 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154686829 Common sda Sda RBAM_023990 2 None None None 154687397 Common yusN YusN RBAM_029960 10 COG5577 COG5577, Spore coat protein Cell envelope biogenesis, outer membrane 154687595 Common yvcN YvcN RBAM_031950 44 COG2162 NhoA, Arylamine N-acetyltransferase Secondary metabolites biosynthesis, transport, and catabolism 154686011 Common ftsY FtsY RBAM_015780 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 154686517 Common aroH AroH RBAM_020850 39 COG4401 AroH, Chorismate mutase Amino acid transport and metabolism 154686754 Common yqzC YqzC RBAM_023240 4 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 154687250 Common yugI YugI RBAM_028490 236 COG1098 VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) Translation, ribosomal structure and biogenesis 154686096 Common tepA TepA RBAM_016630 13 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 154686809 Common hrcA HrcA RBAM_023790 149 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 154686044 Common ylxG YlxG RBAM_016110 94 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 154687027 Common thrS ThrS RBAM_025990 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154685772 Common mtnB MtnB RBAM_013390 55 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 154686165 Common xynP XynP RBAM_017320 85 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 154687739 Nonpathogen - hypothetical protein RBAM_033400 1 None None None 154685803 Common spIB SpIB RBAM_013700 26 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 154688058 Common yxeA YxeA RBAM_036590 8 COG5294 COG5294, Uncharacterized protein conserved in bacteria Function unknown 154685834 Common yknT YknT RBAM_014010 37 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 154687309 Common yuiG YuiG RBAM_029080 37 COG1268 BioY, Uncharacterized conserved protein General function prediction only 154686021 Common ylqF YlqF RBAM_015880 158 COG1161 COG1161, Predicted GTPases General function prediction only 154686945 Common - hypothetical protein RBAM_025150 2 None None None 154686274 Common yngL YngL RBAM_018410 2 None None None 154687568 Common epsA EpsA RBAM_031670 24 COG3944 COG3944, Capsular polysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 154685020 Common yvdP YvdP RBAM_005580 43 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 154687989 Common ydhP YdhP RBAM_035900 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 154685456 Common yhaI YhaI RBAM_010220 2 None None None 154684549 Common yaaR YaaR RBAM_000390 15 COG1728 COG1728, Uncharacterized protein conserved in bacteria Function unknown 154687652 Common csrA CsrA RBAM_032520 83 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 154684581 Common divIC DivIC RBAM_000710 8 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 154685680 Common xlyB XlyB RBAM_012470 29 COG5632 COG5632, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154686227 Common alsT AlsT RBAM_017940 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 154686677 Common yqiK YqiK RBAM_022460 179 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 154687848 Common ywiB YwiB RBAM_034490 12 COG4506 COG4506, Uncharacterized protein conserved in bacteria Function unknown 154685173 Common - hypothetical protein RBAM_007180 20 COG3183 COG3183, Predicted restriction endonuclease Defense mechanisms 154687867 Common ywhA YwhA RBAM_034680 58 COG1846 MarR, Transcriptional regulators Transcription 154684951 Common ydbJ YdbJ RBAM_004820 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154684603 Common mcsB McsB RBAM_001100 25 COG3869 COG3869, Arginine kinase Amino acid transport and metabolism 154686054 Common fliR FliR RBAM_016210 129 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 154684911 Common ydaE YdaE RBAM_004420 6 COG3822 COG3822, ABC-type sugar transport system, auxiliary component General function prediction only 154684558 Common yabD YabD RBAM_000480 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 154685308 Common yfhB YfhB RBAM_008540 119 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 154685536 Common yitJ YitJ RBAM_011020 178 COG0646 MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain Amino acid transport and metabolism 154687315 Common yuiA YuiA RBAM_029140 2 COG1107 COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain DNA replication, recombination, and repair 154685238 Common yflL YflL RBAM_007840 131 COG1254 AcyP, Acylphosphatases Energy production and conversion 154687285 Common yueJ YueJ RBAM_028840 123 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 154687719 Common ywrK YwrK RBAM_033190 68 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 154687964 Common ywbA YwbA RBAM_035650 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 154685223 Common yfmJ YfmJ RBAM_007690 121 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 154685284 Common acoA AcoA RBAM_008300 155 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 154687943 Common ydaS YdaS RBAM_035440 2 COG2261 COG2261, Predicted membrane protein Function unknown 154684939 Common yvaD YvaD RBAM_004700 2 None None None 154685388 Common glpF GlpF RBAM_009540 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 154686345 Common odhA OdhA RBAM_019130 155 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 154686884 Common glnH GlnH RBAM_024540 165 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 154687074 Common sppA SppA RBAM_026460 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 154686430 Common ypjP YpjP RBAM_019980 3 None None None 154686426 Common yplQ YplQ RBAM_019940 114 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 154687757 Common rapD RapD RBAM_033580 4 None None None 154685829 Common ykuR YkuR RBAM_013960 165 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 154688086 Common des Des RBAM_036870 40 COG3239 DesA, Fatty acid desaturase Lipid metabolism 154685333 Common ygaE YgaE RBAM_008790 10 COG4129 COG4129, Predicted membrane protein Function unknown 154686381 Common - hypothetical protein RBAM_019490 3 None None None 154684770 Common lip Lip RBAM_003010 29 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 154686221 Common yneS YneS RBAM_017880 170 COG0344 COG0344, Predicted membrane protein Function unknown 154687730 Common ywrA YwrA RBAM_033300 115 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 154687667 Common yvhJ YvhJ RBAM_032670 63 COG1316 LytR, Transcriptional regulator Transcription 154686354 Common yojG YojG RBAM_019220 47 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 154688135 Common yycJ YycJ RBAM_037360 63 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 154686999 Common pheS PheS RBAM_025710 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 154687663 Common yviA YviA RBAM_032630 51 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 154687464 Common yvgT YvgT RBAM_030630 132 COG2860 COG2860, Predicted membrane protein Function unknown 154687612 Common hisD HisD RBAM_032120 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 154688002 Common yxkH YxkH RBAM_036030 118 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154685511 Common yhjR YhjR RBAM_010770 1 COG1633 COG1633, Uncharacterized conserved protein Function unknown 154684800 Common ycgE YcgE RBAM_003310 70 COG1846 MarR, Transcriptional regulators Transcription 154687917 Common ywdK YwdK RBAM_035180 68 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 154686308 Common yoaD YoaD RBAM_018760 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 154685359 Common prkA PrkA RBAM_009250 71 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 154685693 Common yomR YomR RBAM_012600 1 None None None 154685888 Common nprE NprE RBAM_014550 47 COG3227 LasB, Zinc metalloprotease (elastase) Amino acid transport and metabolism 154684952 Common ydbK YdbK RBAM_004830 8 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 154686007 Common fabG FabG RBAM_015740 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154687380 Common yurY YurY RBAM_029790 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 154688077 Common iolA IolA RBAM_036780 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154685074 Nonpathogen yjiA YjiA RBAM_006120 1 None None None 154686890 Common yrrB YrrB RBAM_024600 111 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 154684880 Common ycnD YcnD RBAM_004110 98 COG0778 NfnB, Nitroreductase Energy production and conversion 154687496 Common yvaO YvaO RBAM_030950 15 COG1396 HipB, Predicted transcriptional regulators Transcription 154688107 Nonpathogen - hypothetical protein RBAM_037080 1 None None None 154686835 Common - hypothetical protein RBAM_024050 15 None None None 154685699 Common xlyA XlyA RBAM_012660 53 COG5632 COG5632, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154684650 Common rplR RplR RBAM_001570 217 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 154685088 Common yhfP YhfP RBAM_006260 172 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 154687710 Common rbsD RbsD RBAM_033100 46 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 154685837 Common moeA MoeA RBAM_014040 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 154686766 Common yqgB YqgB RBAM_023360 4 COG5521 COG5521, Predicted integral membrane protein Function unknown 154688033 Common yxiE YxiE RBAM_036340 160 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 154688165 Nonpathogen yfm2 Yfm2 RBAM_037700 1 None None None 154685463 Common ecsB EcsB RBAM_010290 12 COG4473 EcsB, Predicted ABC-type exoprotein transport system, permease component Intracellular trafficking and secretion 154685715 Common ykfA YkfA RBAM_012820 89 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 154686336 Nonpathogen - hypothetical protein RBAM_019040 1 None None None 154686653 Common yqjD YqjD RBAM_022220 218 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 154685385 Common yhcX YhcX RBAM_009510 171 COG0388 COG0388, Predicted amidohydrolase General function prediction only 154685050 Common yraE YraE RBAM_005880 3 None None None 154684815 Common ycgO YcgO RBAM_003460 181 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 154685725 Common ykkE YkkE RBAM_012920 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 154687054 Common accD AccD RBAM_026260 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 154687838 Common - hypothetical protein RBAM_034390 20 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154684626 Common rpoC RpoC RBAM_001330 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 154685788 Common - hypothetical protein RBAM_013550 17 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 154687671 Common tuaF TuaF RBAM_032710 1 None None None 154686477 Common yppC YppC RBAM_020450 3 None None None 154685548 Common yitV YitV RBAM_011140 16 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 154686326 Common yocD YocD RBAM_018940 84 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 154688193 Common rpsR RpsR RBAM_037980 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 154685798 Common glcT GlcT RBAM_013650 29 COG3711 BglG, Transcriptional antiterminator Transcription 154685128 Common yeaC YeaC RBAM_006730 176 COG0714 COG0714, MoxR-like ATPases General function prediction only 154686528 Common spoIVA SpoIVA RBAM_020960 16 None None None 154684918 Common ydaJ YdaJ RBAM_004490 6 None None None 154684529 Common pdxS PdxS RBAM_000140 87 COG0214 SNZ1, Pyridoxine biosynthesis enzyme Coenzyme metabolism 154685732 Nonpathogen - hypothetical protein RBAM_012990 1 None None None 154687141 Common ytzF YtzF RBAM_027130 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 154687533 Common araE AraE RBAM_031320 118 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686690 Common yqxC YqxC RBAM_022590 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 154687780 Common ureC UreC RBAM_033810 97 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 154687794 Nonpathogen ywmA YwmA RBAM_033950 1 None None None 154685110 Common gutA GutA RBAM_006550 84 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 154687909 Common spsG SpsG RBAM_035100 34 COG3980 spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase Cell envelope biogenesis, outer membrane 154687036 Common ytbD YtbD RBAM_026080 164 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154688125 Common rocR RocR RBAM_037260 170 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 154684701 Common glmS GlmS RBAM_002320 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 154685486 Common yhfR YhfR RBAM_010520 187 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 154688163 Common dinB DinB RBAM_037680 26 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154686798 Common yqfA YqfA RBAM_023680 18 COG4864 COG4864, Uncharacterized protein conserved in bacteria Function unknown 154687099 Common hmp Hmp RBAM_026710 137 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 154687131 Common ytmP YtmP RBAM_027030 9 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 154687271 Common mrpC MrpC RBAM_028700 79 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 154685250 Nonpathogen ydgB YdgB RBAM_007960 1 None None None 154685943 Common divIB DivIB RBAM_015100 21 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 154687566 Common epsC EpsC RBAM_031650 146 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 154686930 Common ysxB YsxB RBAM_025000 19 COG2868 COG2868, Predicted ribosomal protein Translation, ribosomal structure and biogenesis 154685193 Common yetN YetN RBAM_007380 1 None None None 154686812 Common yqxA YqxA RBAM_023820 2 None None None 154685742 Common ykoE YkoE RBAM_013090 24 COG4721 COG4721, Predicted membrane protein Function unknown 154687825 Common murAB MurAB RBAM_034260 218 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 154687355 Nonpathogen - hypothetical protein RBAM_029540 1 None None None 154686589 Common spoIIAA SpoIIAA RBAM_021580 66 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154688026 Nonpathogen yxiK YxiK RBAM_036270 1 None None None 154684565 Common ispE IspE RBAM_000550 194 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 154685767 Common mtnK MtnK RBAM_013340 29 COG4857 COG4857, Predicted kinase General function prediction only 154684910 Common ydaD YdaD RBAM_004410 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154687063 Common ytkK YtkK RBAM_026350 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154684574 Common mfd Mfd RBAM_000640 239 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 154685323 Common csbB CsbB RBAM_008690 203 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154685701 Common spoIISA SpoIISA RBAM_012680 1 None None None 154686577 Common ppiB PpiB RBAM_021460 194 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 154687955 Common thiM ThiM RBAM_035560 77 COG2145 ThiM, Hydroxyethylthiazole kinase, sugar kinase family Coenzyme metabolism 154685761 Common - hypothetical protein RBAM_013280 13 COG2323 COG2323, Predicted membrane protein Function unknown 154686412 Nonpathogen yolB YolB RBAM_019800 1 None None None 154687148 Common amyD AmyD RBAM_027200 162 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 154685098 Common tatAy TatAy RBAM_006430 4 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 154687267 Common yufP YufP RBAM_028660 123 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 154687097 Nonpathogen - hypothetical protein RBAM_026690 1 None None None 154687002 Common ysfB YsfB RBAM_025740 51 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 154686984 Common trxA TrxA RBAM_025560 235 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 154684786 Common yceE YceE RBAM_003170 31 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 154687223 Common hmp1 Hmp1 RBAM_028210 149 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 154685493 Common yhzC YhzC RBAM_010590 1 None None None 154687188 Common ytmA YtmA RBAM_027600 78 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 154685791 Common - hypothetical protein RBAM_013580 2 None None None 154687191 Common ytlD YtlD RBAM_027630 162 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 154686668 Common ptb Ptb RBAM_022370 85 COG0280 Pta, Phosphotransacetylase Energy production and conversion 154687446 Common yvsH YvsH RBAM_030450 150 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154684522 Common recF RecF RBAM_000040 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 154685182 Common yesJ YesJ RBAM_007270 19 COG0456 RimI, Acetyltransferases General function prediction only 154685991 Common yloN YloN RBAM_015580 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 154687330 Common yutK YutK RBAM_029290 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 154684621 Common rplA RplA RBAM_001280 242 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 154687238 Common yugT YugT RBAM_028370 157 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 154686582 Common spoVAE2 SpoVAE2 RBAM_021510 15 None None None 154687005 Common cstA CstA RBAM_025770 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 154685674 Common uxaB UxaB RBAM_012410 85 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 154685708 Common htrA HtrA RBAM_012750 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 154688021 Common dbpA DbpA RBAM_036220 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 154685584 Common yjbD YjbD RBAM_011500 47 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 154686789 Common era Era RBAM_023590 237 COG1159 Era, GTPase General function prediction only 154684575 Common spoVT SpoVT RBAM_000650 16 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 154687971 Common dltB DltB RBAM_035720 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 154687166 Common ytrC YtrC RBAM_027380 3 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 154685318 Common sspK SspK RBAM_008640 2 None None None 154684795 Common ycgA YcgA RBAM_003260 51 COG1288 COG1288, Predicted membrane protein Function unknown 154685107 Common - hypothetical protein RBAM_006520 1 None None None 154687552 Common sigL SigL RBAM_031510 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 154684843 Common sfp Sfp RBAM_003740 70 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 154684596 Common sul Sul RBAM_000880 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 154685468 Common pbpF PbpF RBAM_010340 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 154686468 Common yprB YprB RBAM_020360 20 COG3359 COG3359, Predicted exonuclease DNA replication, recombination, and repair 154687817 Common ywkD YwkD RBAM_034180 53 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154686571 Common ribA RibA RBAM_021400 232 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 154686559 Common resB ResB RBAM_021280 40 COG1333 ResB, ResB protein required for cytochrome c biosynthesis Posttranslational modification, protein turnover, chaperones 154684688 Common ybbC YbbC RBAM_002140 51 COG3876 COG3876, Uncharacterized protein conserved in bacteria Function unknown 154685775 Common kinD KinD RBAM_013420 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154686337 Common yozC YozC RBAM_019050 4 None None None 154686000 Common yloV YloV RBAM_015670 50 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 154685498 Nonpathogen yrpD YrpD RBAM_010640 1 None None None 154687406 Common yusU YusU RBAM_030050 1 None None None 154687524 Common spsC1 SpsC1 RBAM_031230 196 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 154685420 Common yhdX YhdX RBAM_009860 1 None None None 154687109 Common acuA AcuA RBAM_026810 8 None None None 154685294 Common yfiB YfiB RBAM_008400 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154687765 Common ywoD YwoD RBAM_033660 223 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686269 Common - hypothetical protein RBAM_018360 148 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 154687123 Common ytpP YtpP RBAM_026950 36 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 154686123 Common baeB BaeB RBAM_016900 211 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154688202 Common spo0J Spo0J RBAM_038070 186 COG1475 Spo0J, Predicted transcriptional regulators Transcription 154686849 Common manA ManA RBAM_024190 51 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 154685812 Common - hypothetical protein RBAM_013790 1 None None None 154687428 Common yvqJ YvqJ RBAM_030270 115 None None None 154688156 Common cotF CotF RBAM_037610 3 COG5577 COG5577, Spore coat protein Cell envelope biogenesis, outer membrane 154685873 Common mlnH MlnH RBAM_014400 157 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154685912 Common ctaG CtaG RBAM_014790 15 COG3336 COG3336, Predicted membrane protein Function unknown 154687855 Common - hypothetical protein RBAM_034560 1 None None None 154685427 Common nhaX NhaX RBAM_009930 90 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 154685919 Common ylbG YlbG RBAM_014860 10 COG4471 COG4471, Uncharacterized protein conserved in bacteria Function unknown 154686277 Common fenC FenC RBAM_018440 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687746 Common ywqD YwqD RBAM_033470 152 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 154686157 Common ynbB YnbB RBAM_017240 49 COG4100 COG4100, Cystathionine beta-lyase family protein involved in aluminum resistance Inorganic ion transport and metabolism 154686260 Common bioF BioF RBAM_018270 191 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 154684853 Common yclF YclF RBAM_003840 83 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 154684903 Common ycsK YcsK RBAM_004340 11 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 154686330 Nonpathogen yocL YocL RBAM_018980 1 None None None 154687585 Common clpP ClpP RBAM_031850 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 154687033 Common speD SpeD RBAM_026050 72 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 154685907 Common ctaB CtaB RBAM_014740 173 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 154685158 Common yerH YerH RBAM_007030 9 COG4851 CamS, Protein involved in sex pheromone biosynthesis General function prediction only 154685231 Common - hypothetical protein RBAM_007770 5 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 154685865 Nonpathogen - hypothetical protein RBAM_014320 1 None None None 154687771 Nonpathogen ywnJ YwnJ RBAM_033720 1 COG5652 COG5652, Predicted integral membrane protein Function unknown 154688172 Common ydgJ YdgJ RBAM_037770 109 COG1846 MarR, Transcriptional regulators Transcription 154686018 Common rimM RimM RBAM_015850 119 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 154685165 Common yerO YerO RBAM_007100 108 COG1309 AcrR, Transcriptional regulator Transcription 154688095 Common ahpC AhpC RBAM_036960 215 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 154685100 Common ydiK YdiK RBAM_006450 1 None None None 154687873 Common - hypothetical protein RBAM_034740 37 COG1695 COG1695, Predicted transcriptional regulators Transcription 154687502 Common spaF SpaF RBAM_031010 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154685606 Common yjbV YjbV RBAM_011720 220 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 154684747 Common ybgG YbgG RBAM_002780 163 COG2040 MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) Amino acid transport and metabolism 154686065 Common swrB SwrB RBAM_016320 1 None None None 154687750 Common ywpJ YwpJ RBAM_033510 132 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154685687 Common xkdC XkdC RBAM_012540 30 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 154686397 Common yodU YodU RBAM_019650 193 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 154685931 Common yllA YllA RBAM_014980 20 COG4365 COG4365, Uncharacterized protein conserved in bacteria Function unknown 154687113 Common ytxD YtxD RBAM_026850 86 COG1291 MotA, Flagellar motor component Cell motility and secretion 154686873 Common udk Udk RBAM_024430 82 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 154687891 Nonpathogen bacB BacB RBAM_034920 1 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 154686937 Common mreC MreC RBAM_025070 122 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 154687013 Common araB AraB RBAM_025850 163 COG1069 AraB, Ribulose kinase Energy production and conversion 154686617 Common - hypothetical membrane protein RBAM_021860 187 COG0628 PerM, Predicted permease General function prediction only 154684945 Common ydbD YdbD RBAM_004760 46 COG3546 COG3546, Mn-containing catalase Inorganic ion transport and metabolism 154686152 Common nrdF NrdF RBAM_017190 140 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 154686327 Nonpathogen - hypothetical protein RBAM_018950 1 None None None 154686971 Common ysnA YsnA RBAM_025430 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 154685555 Common argB ArgB RBAM_011210 217 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 154687899 Common - putative two-component sensor histidine kinase RBAM_035000 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154686132 Common baeL BaeL RBAM_016990 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154684921 Common ydaM YdaM RBAM_004520 204 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154686063 Common cheD CheD RBAM_016300 71 COG1871 CheD, Chemotaxis protein; stimulates methylation of MCP proteins Cell motility and secretion / Signal transduction mechanisms 154686472 Common yppG YppG RBAM_020400 2 None None None 154687418 Common - hypothetical protein RBAM_030170 1 None None None 154687745 Common ywqE YwqE RBAM_033460 40 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 154687391 Common yusJ YusJ RBAM_029900 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 154687970 Common dltA DltA RBAM_035710 218 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686755 Common pstBB PstBB RBAM_023250 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 154687292 Common yueC YueC RBAM_028910 2 None None None 154685304 Common yfiT YfiT RBAM_008500 12 None None None 154685403 Common citR CitR RBAM_009690 190 COG0583 LysR, Transcriptional regulator Transcription 154687837 Common ywiE YwiE RBAM_034380 151 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 154686828 Common yqeG YqeG RBAM_023980 43 COG2179 COG2179, Predicted hydrolase of the HAD superfamily General function prediction only 154687302 Common dhbF DhbF RBAM_029010 221 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154684824 Common yciC YciC RBAM_003550 128 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 154687031 Common dnaB DnaB RBAM_026030 16 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 154686886 Common glnP GlnP RBAM_024560 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154685841 Common yknW YknW RBAM_014080 1 None None None 154686402 Nonpathogen yoqO YoqO RBAM_019700 1 COG2351 COG2351, Transthyretin-like protein General function prediction only 154686012 Nonpathogen - hypothetical protein RBAM_015790 1 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 154685703 Common ykaA YkaA RBAM_012700 70 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 154684732 Common yoaI YoaI RBAM_002630 50 COG2368 COG2368, Aromatic ring hydroxylase Secondary metabolites biosynthesis, transport, and catabolism 154687331 Common yuzB YuzB RBAM_029300 4 COG4844 COG4844, Uncharacterized protein conserved in bacteria Function unknown 154685325 Common yfhP YfhP RBAM_008710 31 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 154688160 Common sacB SacB RBAM_037650 16 None None None 154687547 Common yvfW YvfW RBAM_031460 94 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 154688083 Common yxbG YxbG RBAM_036840 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154684896 Common ycsE YcsE RBAM_004270 136 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154686427 Common ypkP YpkP RBAM_019950 1 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 154686250 Common bmyB BmyB RBAM_018170 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154685973 Common cysH CysH RBAM_015400 164 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 154687164 Common ytrD YtrD RBAM_027360 2 None None None 154688191 Common adaB AdaB RBAM_037960 218 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 154684978 Common ydcI YdcI RBAM_005090 207 COG2183 Tex, Transcriptional accessory protein Transcription 154684699 Common ybbT YbbT RBAM_002300 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 154686579 Common lysA LysA RBAM_021480 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 154686916 Common bofC BofC RBAM_024860 2 None None None 154688110 Nonpathogen - hypothetical protein RBAM_037110 1 None None None 154685459 Common yhaG YhaG RBAM_010250 7 None None None 154686853 Common yjdI YjdI RBAM_024230 88 COG2606 EbsC, Uncharacterized conserved protein Function unknown 154687945 Common galK GalK RBAM_035460 93 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 154684589 Common yacB YacB RBAM_000810 136 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 154686243 Common bglC BglC RBAM_018100 16 COG2730 BglC, Endoglucanase Carbohydrate transport and metabolism 154687637 Common swrA SwrA RBAM_032370 1 None None None 154684981 Common yrkL YrkL RBAM_005190 73 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 154686378 Common yozD YozD RBAM_019460 2 None None None 154685667 Common yjlA YjlA RBAM_012340 11 None None None 154684590 Common yacC YacC RBAM_000820 140 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 154687048 Common ytwI YtwI RBAM_026200 28 COG2707 COG2707, Predicted membrane protein Function unknown 154685392 Common yhcY YhcY RBAM_009580 147 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685544 Common ipi Ipi RBAM_011100 2 None None None 154686372 Common yodI YodI RBAM_019400 1 None None None 154686922 Common nadB NadB RBAM_024920 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 154686953 Common hemA HemA RBAM_025230 181 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 154685434 Common yheD YheD RBAM_010000 6 None None None 154687505 Common opuBB OpuBB RBAM_031040 156 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 154687603 Common yvcD YvcD RBAM_032030 17 None None None 154684943 Common ydbB YdbB RBAM_004740 35 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 154687144 Common opuD OpuD RBAM_027160 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 154687463 Common yvgS YvgS RBAM_030620 62 COG3973 COG3973, Superfamily I DNA and RNA helicases General function prediction only 154684648 Common rpsH RpsH RBAM_001550 248 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 154687928 Common sacP SacP RBAM_035290 43 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154685681 Common yjqA YjqA RBAM_012480 29 None None None 154685246 Common yflE YflE RBAM_007920 59 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 154687153 Common leuS LeuS RBAM_027250 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154686232 Common yjmF YjmF RBAM_017990 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154685269 Common yfkE YfkE RBAM_008150 48 COG0387 ChaA, Ca2+/H+ antiporter Inorganic ion transport and metabolism 154688098 Common ydgF YdgF RBAM_036990 146 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 154684862 Common yxeN YxeN RBAM_003930 176 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154687927 Common sacA SacA RBAM_035280 53 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 154686167 Common xylR XylR RBAM_017340 174 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 154686787 Common glyQ GlyQ RBAM_023570 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 154687386 Common yusE YusE RBAM_029850 22 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 154686166 Common xynB XynB RBAM_017330 37 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 154686714 Common yqhO YqhO RBAM_022830 25 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 154688144 Nonpathogen yyzB YyzB RBAM_037490 1 None None None 154684838 Common srfAD SrfAD RBAM_003690 52 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 154686303 Common yoxD YoxD RBAM_018710 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 154686991 Common ywbB YwbB RBAM_025630 1 None None None 154687644 Common prfB PrfB RBAM_032440 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 154687020 Common rpmI RpmI RBAM_025920 162 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 154685137 Common yebE YebE RBAM_006820 23 COG4843 COG4843, Uncharacterized protein conserved in bacteria Function unknown 154688049 Common yxeH YxeH RBAM_036500 138 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154685291 Common glvR GlvR RBAM_008370 37 COG1737 RpiR, Transcriptional regulators Transcription 154688071 Common iolG IolG RBAM_036720 180 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 154685108 Common gutR GutR RBAM_006530 8 COG5635 COG5635, Predicted NTPase (NACHT family) Signal transduction mechanisms 154685506 Common yhjG YhjG RBAM_010720 120 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 154685976 Common cysC CysC RBAM_015430 145 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 154686138 Common yoaK YoaK RBAM_017050 20 COG3619 COG3619, Predicted membrane protein Function unknown 154687318 Nonpathogen yuzG YuzG RBAM_029170 1 None None None 154685519 Common gerPE GerPE RBAM_010850 2 None None None 154687427 Common yvqI YvqI RBAM_030260 1 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 154686976 Common gerE GerE RBAM_025480 134 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154685507 Common yhjH YhjH RBAM_010730 11 COG1846 MarR, Transcriptional regulators Transcription 154686674 Common mmgC MmgC RBAM_022430 169 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 154687967 Common ywaC YwaC RBAM_035680 85 COG2357 COG2357, Uncharacterized protein conserved in bacteria Function unknown 154685540 Common - hypothetical protein RBAM_011060 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154686048 Common fliM FliM RBAM_016150 108 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 154685101 Common ydiL YdiL RBAM_006460 27 COG1266 COG1266, Predicted metal-dependent membrane protease General function prediction only 154684768 Common lmrA LmrA RBAM_002990 92 COG1309 AcrR, Transcriptional regulator Transcription 154685590 Common yjbH YjbH RBAM_011560 16 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 154687346 Common yunB YunB RBAM_029450 13 None None None 154686567 Common scpA ScpA RBAM_021360 146 COG1354 COG1354, Uncharacterized conserved protein Function unknown 154685028 Common - florfenicol/chloramphenicol resistance like protein RBAM_005660 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 154686720 Common gcvT GcvT RBAM_022890 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 154686356 Common - hypothetical protein RBAM_019240 2 None None None 154687325 Nonpathogen - hypothetical protein RBAM_029240 1 None None None 154685470 Common hemH HemH RBAM_010360 163 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 154684566 Common purR PurR RBAM_000560 97 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 154685060 Common - hypothetical protein RBAM_005980 57 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154685673 Common exuR ExuR RBAM_012400 131 COG1609 PurR, Transcriptional regulators Transcription 154686211 Common sspP SspP RBAM_017780 2 None None None 154686597 Common yqkK YqkK RBAM_021660 1 None None None 154688000 Common cydA CydA RBAM_036010 167 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 154685688 Common - hypothetical protein RBAM_012550 1 None None None 154684761 Common cwlJ CwlJ RBAM_002920 6 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 154687596 Common crh Crh RBAM_031960 147 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 154684588 Common ftsH FtsH RBAM_000800 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 154685462 Common ecsA EcsA RBAM_010280 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154686436 Common bsaA BsaA RBAM_020040 115 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 154685448 Common yhaP YhaP RBAM_010140 45 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 154687852 Common rapF RapF RBAM_034530 10 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 154684928 Nonpathogen - hypothetical protein RBAM_004590 1 None None None 154685351 Common ygaO YgaO RBAM_009160 1 None None None 154685815 Common ykuC YkuC RBAM_013820 135 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686815 Common rpsT RpsT RBAM_023850 205 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 154685921 Common coaD CoaD RBAM_014880 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 154687896 Common rocB RocB RBAM_034970 10 COG4187 RocB, Arginine degradation protein (predicted deacylase) Amino acid transport and metabolism 154688201 Common yyaC YyaC RBAM_038060 14 None None None 154688044 Common hutM HutM RBAM_036450 162 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 154687521 Common - hypothetical protein RBAM_031200 5 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 154687130 Common ytzH YtzH RBAM_027020 3 None None None 154684858 Common gerKB GerKB RBAM_003890 15 None None None 154686387 Common yodR YodR RBAM_019550 94 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 154687567 Common epsB EpsB RBAM_031660 169 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 154685371 Common cspB CspB RBAM_009370 181 COG1278 CspC, Cold shock proteins Transcription 154688057 Common - transposases lmo0828-like protein RBAM_036580 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 154686454 Common - hypothetical protein RBAM_020220 64 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 154687207 Common ytxM YtxM RBAM_027790 167 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154686629 Common dfnI DfnI RBAM_021980 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154688052 Nonpathogen yxeE YxeE RBAM_036530 1 COG2433 COG2433, Uncharacterized conserved protein Function unknown 154685090 Common thiL ThiL RBAM_006350 197 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 154685653 Common pgm Pgm RBAM_012200 107 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 154684519 Common dnaA DnaA RBAM_000010 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 154686929 Common rpmA RpmA RBAM_024990 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 154687882 Common ywfK YwfK RBAM_034830 192 COG0583 LysR, Transcriptional regulator Transcription 154687623 Common yxaF YxaF RBAM_032230 70 COG1309 AcrR, Transcriptional regulator Transcription 154684902 Common kipR KipR RBAM_004330 119 COG1414 IclR, Transcriptional regulator Transcription 154686145 Common ymaF YmaF RBAM_017120 4 None None None 154687885 Common ywfI YwfI RBAM_034860 35 COG3253 COG3253, Uncharacterized conserved protein Function unknown 154688124 Common rocD RocD RBAM_037250 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 154685172 Nonpathogen - hypothetical protein RBAM_007170 1 None None None 154688179 Common yxjF1 YxjF1 RBAM_037840 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154687432 Common yvrC YvrC RBAM_030310 178 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 154687738 Common - hypothetical protein RBAM_033390 3 COG5585 COG5585, NAD+--asparagine ADP-ribosyltransferase Signal transduction mechanisms 154687178 Common ytqB YtqB RBAM_027500 28 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 154686946 Common ysxE YsxE RBAM_025160 3 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 154685641 Common penP PenP RBAM_012080 57 COG2367 PenP, Beta-lactamase class A Defense mechanisms 154686964 Common leuA LeuA RBAM_025340 217 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 154684557 Common metS MetS RBAM_000470 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154686465 Common ypsB YpsB RBAM_020330 11 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 154687028 Common ytxC YtxC RBAM_026000 10 None None None 154687122 Common ytpQ YtpQ RBAM_026940 8 COG4848 COG4848, Uncharacterized protein conserved in bacteria Function unknown 154687622 Common yvoA YvoA RBAM_032220 150 COG2188 PhnF, Transcriptional regulators Transcription 154684550 Common holB HolB RBAM_000400 236 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 154686518 Common aroB AroB RBAM_020860 207 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 154687283 Common yuxH YuxH RBAM_028820 48 COG3434 COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains Signal transduction mechanisms 154687672 Common tuaE TuaE RBAM_032720 4 None None None 154686228 Common - 2-keto-3-deoxygluconokinase RBAM_017950 183 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 154684674 Common gerD GerD RBAM_001810 4 None None None 154685239 Common yflK YflK RBAM_007850 79 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 154687993 Common katX KatX RBAM_035940 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 154685416 Common yhdT YhdT RBAM_009820 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 154686053 Common fliQ FliQ RBAM_016200 109 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 154685617 Common yjcC YjcC RBAM_011830 3 None None None 154686551 Common ypaA YpaA RBAM_021200 24 COG3601 COG3601, Predicted membrane protein Function unknown 154685835 Common mobA MobA RBAM_014020 59 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 154686285 Common yoeD YoeD RBAM_018530 2 None None None 154685597 Common yjbO YjbO RBAM_011630 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 154687488 Common yvaG YvaG RBAM_030870 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686005 Common plsX PlsX RBAM_015720 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 154687473 Common yvaB YvaB RBAM_030720 99 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 154687103 Common - hypothetical protein RBAM_026750 221 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 154684821 Common nasC NasC RBAM_003520 195 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 154685118 Common yrhM YrhM RBAM_006630 9 None None None 154686640 Common - putative transcription antiterminator RBAM_022090 106 COG0250 NusG, Transcription antiterminator Transcription 154684723 Nonpathogen yolA1 YolA1 RBAM_002540 2 None None None 154687774 Common ywnG YwnG RBAM_033750 1 None None None 154687246 Common - hypothetical protein RBAM_028450 82 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 154686111 Common recA RecA RBAM_016780 221 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 154685259 Common - putative transcriptional regulator RBAM_008050 130 COG1609 PurR, Transcriptional regulators Transcription 154687792 Common ywmB YwmB RBAM_033930 4 None None None 154686037 Common fliF FliF RBAM_016040 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 154686491 Common birA BirA RBAM_020590 229 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 154686607 Nonpathogen yqkE YqkE RBAM_021760 1 None None None 154686407 Common - hypothetical protein RBAM_019750 194 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154685994 Common engC EngC RBAM_015610 163 COG1162 COG1162, Predicted GTPases General function prediction only 154685648 Common galK1 GalK1 RBAM_012150 105 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 154686219 Common yneQ YneQ RBAM_017860 4 None None None 154686692 Common yqiD YqiD RBAM_022610 242 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 154688105 Common - hypothetical protein RBAM_037060 14 COG4129 COG4129, Predicted membrane protein Function unknown 154684659 Common rpsM RpsM RBAM_001660 247 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 154686734 Common comGC ComGC RBAM_023030 7 COG4537 ComGC, Competence protein ComGC Intracellular trafficking and secretion 154686936 Common mreD MreD RBAM_025060 11 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 154687185 Common metK MetK RBAM_027570 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 154686872 Common greA GreA RBAM_024420 203 COG0782 GreA, Transcription elongation factor Transcription 154687901 Common - hypothetical protein RBAM_035020 1 None None None 154684711 Common ybdO1 YbdO1 RBAM_002420 1 None None None 154686751 Common yqgN YqgN RBAM_023210 89 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 154687636 Common yvjD YvjD RBAM_032360 12 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 154687270 Common mrpB MrpB RBAM_028690 78 COG2111 MnhB, Multisubunit Na+/H+ antiporter, MnhB subunit Inorganic ion transport and metabolism 154686821 Common yqeM YqeM RBAM_023910 144 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154684700 Nonpathogen - hypothetical protein RBAM_002310 1 None None None 154687369 Common - HTH transcription regulator RBAM_029680 109 COG0789 SoxR, Predicted transcriptional regulators Transcription 154687981 Common - putative ferrichrome transport system permease RBAM_035820 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154686195 Common - hypothetical protein RBAM_017620 16 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 154684613 Common yazC YazC RBAM_001200 39 COG1939 COG1939, Uncharacterized protein conserved in bacteria Function unknown 154685510 Common - hypothetical protein RBAM_010760 121 COG1309 AcrR, Transcriptional regulator Transcription 154684695 Common sigW SigW RBAM_002260 177 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154685209 Common yfnF YfnF RBAM_007540 10 None None None 154687933 Common - putative transposase RBAM_035340 6 None None None 154685346 Common ssuB SsuB RBAM_009110 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 154684814 Common ycgN YcgN RBAM_003450 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154686544 Common ypbG YpbG RBAM_021130 88 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 154684728 Common - hypothetical protein RBAM_002590 1 None None None 154686363 Common yodC YodC RBAM_019310 48 COG0778 NfnB, Nitroreductase Energy production and conversion 154685741 Common ykoD YkoD RBAM_013080 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 154687457 Common - putative multidrug ABC transporter, permease RBAM_030560 38 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 154688015 Nonpathogen yxiS YxiS RBAM_036160 2 None None None 154687701 Common ywtC YwtC RBAM_033010 1 None None None 154685783 Common ykvK YkvK RBAM_013500 90 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 154685361 Common yhbI YhbI RBAM_009270 35 COG1846 MarR, Transcriptional regulators Transcription 154687200 Common ythA YthA RBAM_027720 167 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 154684718 Common - two-component response regulator RBAM_002490 222 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154687115 Common aroA AroA RBAM_026870 189 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 154687262 Common yufK YufK RBAM_028610 1 None None None 154685846 Common fruK FruK RBAM_014130 104 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 154685627 Common yjcI YjcI RBAM_011930 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 154686721 Common yqhH YqhH RBAM_022900 222 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 154688034 Common bglH BglH RBAM_036350 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 154687014 Common araA AraA RBAM_025860 35 COG2160 AraA, L-arabinose isomerase Carbohydrate transport and metabolism 154687711 Common rbsA RbsA RBAM_033110 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 154684881 Common ycnE YcnE RBAM_004120 53 COG1359 COG1359, Uncharacterized conserved protein Function unknown 154687586 Common yraN YraN RBAM_031860 191 COG0583 LysR, Transcriptional regulator Transcription 154684818 Common nasF NasF RBAM_003490 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 154685654 Common - hypothetical protein RBAM_012210 31 COG3055 COG3055, Uncharacterized protein conserved in bacteria Function unknown 154684909 Common ydaB YdaB RBAM_004400 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154684521 Common yaaA YaaA RBAM_000030 38 COG2501 COG2501, Uncharacterized conserved protein Function unknown 154686638 Nonpathogen dfnY DfnY RBAM_022070 1 None None None 154687301 Common - hypothetical protein RBAM_029000 35 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 154685714 Common dppE DppE RBAM_012810 202 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 154686101 Common - hypothetical protein RBAM_016680 55 COG1846 MarR, Transcriptional regulators Transcription 154686771 Common zur Zur RBAM_023410 188 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 154684546 Common yaaO YaaO RBAM_000360 95 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 154685087 Common yndB YndB RBAM_006250 8 COG3832 COG3832, Uncharacterized conserved protein Function unknown 154685162 Common gatC GatC RBAM_007070 175 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 154686522 Common hepT HepT RBAM_020900 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 154686693 Common xseB XseB RBAM_022620 115 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 154686099 Common ymfC YmfC RBAM_016660 127 COG2188 PhnF, Transcriptional regulators Transcription 154685647 Common galE1 GalE1 RBAM_012140 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 154685709 Common yubD YubD RBAM_012760 48 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685792 Common ykvT YkvT RBAM_013590 34 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 154685109 Common gutB GutB RBAM_006540 216 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154687094 Common - putative sigma factor-like positive control protein RBAM_026660 6 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154686499 Common oxdC1 OxdC1 RBAM_020670 15 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 154685891 Common ylaB YlaB RBAM_014580 1 None None None 154685123 Nonpathogen - hypothetical protein RBAM_006680 1 None None None 154685217 Common - putative beta 1,4 glucosyltransferase RBAM_007620 110 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154686070 Common uppS UppS RBAM_016370 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 154685826 Common ykuO YkuO RBAM_013930 2 None None None 154686512 Common trpB TrpB RBAM_020800 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 154687046 Common citZ CitZ RBAM_026180 194 COG0372 GltA, Citrate synthase Energy production and conversion 154686235 Common yndG YndG RBAM_018020 4 None None None 154687053 Common accA AccA RBAM_026250 183 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 154684882 Common yczG YczG RBAM_004130 74 COG0640 ArsR, Predicted transcriptional regulators Transcription 154685726 Common proB ProB RBAM_012930 198 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 154687988 Common ydhO YdhO RBAM_035890 39 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 154685439 Nonpathogen yhaY YhaY RBAM_010050 1 None None None 154687679 Common lytA LytA RBAM_032790 1 None None None 154686335 Common yozO YozO RBAM_019030 25 None None None 154687235 Nonpathogen - hypothetical protein RBAM_028340 1 None None None 154684917 Common topB TopB RBAM_004480 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 154685755 Common sigI SigI RBAM_013220 18 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154687114 Common ccpA CcpA RBAM_026860 130 COG1609 PurR, Transcriptional regulators Transcription 154686588 Common spoIIAB SpoIIAB RBAM_021570 39 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 154687312 Common yuiD YuiD RBAM_029110 28 COG1963 COG1963, Uncharacterized protein conserved in bacteria Function unknown 154685031 Common - hypothetical protein RBAM_005690 98 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 154687747 Common ywqC YwqC RBAM_033480 22 COG3944 COG3944, Capsular polysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 154685370 Common yhcI YhcI RBAM_009360 9 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 154685073 Common ydhE YdhE RBAM_006110 40 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 154684702 Common - putative ATP binding protein of ABC transporter RBAM_002330 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154688069 Common iolI IolI RBAM_036700 55 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 154684687 Common ybbB YbbB RBAM_002130 138 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 154685698 Common xhlB XhlB RBAM_012650 2 None None None 154685731 Nonpathogen - hypothetical protein RBAM_012980 2 None None None 154684717 Common - sensory transduction protein kinase RBAM_002480 143 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685556 Common argD ArgD RBAM_011220 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 154684922 Common ydaN YdaN RBAM_004530 5 None None None 154685285 Common acoB AcoB RBAM_008310 204 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 154686616 Common yqzH YqzH RBAM_021850 1 None None None 154687297 Common yukE YukE RBAM_028960 8 COG4842 COG4842, Uncharacterized protein conserved in bacteria Function unknown 154687954 Common thiE ThiE RBAM_035550 209 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 154686590 Common dacF DacF RBAM_021590 158 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 154684597 Common folA FolA RBAM_000890 129 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 154685769 Common mtnE MtnE RBAM_013360 236 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154687286 Common yueI YueI RBAM_028850 10 COG5506 COG5506, Uncharacterized conserved protein Function unknown 154684604 Common clpC ClpC RBAM_001110 238 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 154684927 Common ypzD YpzD RBAM_004580 2 None None None 154685309 Common yfhC YfhC RBAM_008550 90 COG0778 NfnB, Nitroreductase Energy production and conversion 154684931 Common - hypothetical protein RBAM_004620 1 None None None 154687758 Common flhP FlhP RBAM_033590 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 154686293 Common gltB GltB RBAM_018610 204 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 154687661 Common comFB ComFB RBAM_032610 5 None None None 154685389 Common glpK GlpK RBAM_009550 180 COG0554 GlpK, Glycerol kinase Energy production and conversion 154686710 Common yqhT YqhT RBAM_022790 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 154686346 Common yojO YojO RBAM_019140 28 COG4548 NorD, Nitric oxide reductase activation protein Inorganic ion transport and metabolism 154686529 Common yphF YphF RBAM_020970 3 None None None 154686209 Common yneK YneK RBAM_017760 3 COG4630 XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A Nucleotide transport and metabolism 154686791 Common dgkA DgkA RBAM_023610 56 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 154685232 Common citS CitS RBAM_007780 136 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 154686892 Common yrvO YrvO RBAM_024620 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 154685966 Common pyrC PyrC RBAM_015330 216 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 154688010 Common yxjI YxjI RBAM_036110 10 COG4894 COG4894, Uncharacterized conserved protein Function unknown 154684636 Common rplW RplW RBAM_001430 212 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 154687431 Common yvrB YvrB RBAM_030300 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154688089 Common yxaL YxaL RBAM_036900 57 COG1520 COG1520, FOG: WD40-like repeat Function unknown 154684576 Common yabM YabM RBAM_000660 31 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 154685692 Common xtmA XtmA RBAM_012590 1 None None None 154686683 Common yqiG YqiG RBAM_022520 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 154687664 Common degU DegU RBAM_032640 217 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154684787 Common yceF YceF RBAM_003180 119 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 154685864 Common ykyA YkyA RBAM_014310 3 None None None 154686806 Common dnaJ DnaJ RBAM_023760 234 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 154687165 Common ytrC1 YtrC1 RBAM_027370 4 None None None 154686380 Common yodN YodN RBAM_019480 2 None None None 154684587 Common hprT HprT RBAM_000790 155 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 154685880 Common - putative polysaccharide deacetylase RBAM_014470 80 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154686119 Common ymcA YmcA RBAM_016860 9 COG4550 COG4550, Predicted membrane protein Function unknown 154685682 Common yjqB YjqB RBAM_012490 8 COG4195 COG4195, Phage-related replication protein General function prediction only 154686956 Common lonA LonA RBAM_025260 223 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 154686268 Common yngG YngG RBAM_018350 198 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 154688178 Common - putative HTH-type transcriptional regulator RBAM_037830 190 COG0583 LysR, Transcriptional regulator Transcription 154684969 Common ydcE YdcE RBAM_005000 42 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 154687611 Common hisB HisB RBAM_032110 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 154685583 Common yjbC YjbC RBAM_011490 2 None None None 154684801 Common ycgF YcgF RBAM_003320 44 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 154686222 Common yneT YneT RBAM_017890 128 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 154686641 Common - putative transcriptional regulators (LysR family) RBAM_022100 192 COG0583 LysR, Transcriptional regulator Transcription 154686998 Common pheT PheT RBAM_025700 248 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 154687381 Common yurZ YurZ RBAM_029800 13 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 154687910 Common spsF SpsF RBAM_035110 40 COG1861 SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog Cell envelope biogenesis, outer membrane 154687177 Common ytqA YtqA RBAM_027490 84 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 154687807 Common ywlF YwlF RBAM_034080 128 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 154686006 Common fabD FabD RBAM_015730 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 154685800 Common ptsH PtsH RBAM_013670 153 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 154687347 Common yunD YunD RBAM_029460 117 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 154687576 Common - hypothetical protein RBAM_031750 2 None None None 154684960 Common murF MurF RBAM_004910 212 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 154686276 Common fenD FenD RBAM_018430 223 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154685774 Common spo0E Spo0E RBAM_013410 1 None None None 154685499 Common yhjA YhjA RBAM_010650 1 None None None 154687766 Common ywoC YwoC RBAM_033670 131 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 154685911 Common ctaF CtaF RBAM_014780 4 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 154684990 Nonpathogen yddJ YddJ RBAM_005280 1 None None None 154685538 Common yitL YitL RBAM_011040 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 154686760 Common - hypothetical protein RBAM_023300 6 None None None 154686328 Common yocH YocH RBAM_018960 86 COG3584 COG3584, Uncharacterized protein conserved in bacteria Function unknown 154686019 Common trmD TrmD RBAM_015860 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 154686848 Common - hypothetical protein RBAM_024180 55 COG1737 RpiR, Transcriptional regulators Transcription 154687495 Common yvaN YvaN RBAM_030940 20 COG1396 HipB, Predicted transcriptional regulators Transcription 154686669 Common bkdR BkdR RBAM_022380 183 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 154687372 Common yurR YurR RBAM_029710 142 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 154687783 Common csbD CsbD RBAM_033840 9 None None None 154687034 Common gapB GapB RBAM_026060 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 154686843 Common yyaR YyaR RBAM_024130 2 None None None 154684946 Common dctB DctB RBAM_004770 96 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 154685202 Common - hypothetical protein RBAM_007470 42 COG1944 COG1944, Uncharacterized conserved protein Function unknown 154684606 Common yacK YacK RBAM_001130 30 COG1623 COG1623, Predicted nucleic-acid-binding protein (contains the HHH domain) General function prediction only 154687412 Common yvtA YvtA RBAM_030110 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 154686620 Common coaA CoaA RBAM_021890 70 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 154688157 Common yybR YybR RBAM_037620 149 COG1733 COG1733, Predicted transcriptional regulators Transcription 154687870 Common ywfO YwfO RBAM_034710 87 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 154687688 Common tagA TagA RBAM_032880 110 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 154684753 Common rtpA RtpA RBAM_002840 1 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 154687864 Common ywhD YwhD RBAM_034650 4 None None None 154685278 Common yfjP YfjP RBAM_008240 119 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 154685367 Common yhcF YhcF RBAM_009330 133 COG1725 COG1725, Predicted transcriptional regulators Transcription 154688019 Common licT LicT RBAM_036200 29 COG3711 BglG, Transcriptional antiterminator Transcription 154685932 Common yllB YllB RBAM_014990 137 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 154687073 Common yteJ YteJ RBAM_026450 16 COG1714 COG1714, Predicted membrane protein/domain Function unknown 154684618 Common secE SecE RBAM_001250 3 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 154686052 Common fliP FliP RBAM_016190 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 154687692 Common gerBA GerBA RBAM_032920 15 None None None 154686083 Common truB TruB RBAM_016500 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 154686471 Common ypqA YpqA RBAM_020390 1 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 154687255 Common patB PatB RBAM_028540 236 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 154686064 Common sigD SigD RBAM_016310 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154686066 Common rpsB RpsB RBAM_016330 244 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 154687139 Common ythP YthP RBAM_027110 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154685159 Common yerI YerI RBAM_007040 35 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 154686459 Common ypwA YpwA RBAM_020270 82 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 154686832 Common yqeD YqeD RBAM_024020 83 COG0398 COG0398, Uncharacterized conserved protein Function unknown 154685799 Common ptsG PtsG RBAM_013660 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154685150 Common purD PurD RBAM_006950 233 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 154687417 Common citG CitG RBAM_030160 237 COG0114 FumC, Fumarase Energy production and conversion 154687206 Common menB MenB RBAM_027780 181 COG0447 MenB, Dihydroxynaphthoic acid synthase Coenzyme metabolism 154686036 Common fliE FliE RBAM_016030 81 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 154688023 Nonpathogen - hypothetical protein RBAM_036240 1 None None None 154687536 Common yvbU YvbU RBAM_031350 193 COG0583 LysR, Transcriptional regulator Transcription 154685487 Common yhfS YhfS RBAM_010530 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 154686151 Common nrdE NrdE RBAM_017180 220 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 154687222 Common yubE YubE RBAM_028200 66 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 154687405 Common - hypothetical protein RBAM_030040 114 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 154686970 Common ysnB YsnB RBAM_025420 48 COG0622 COG0622, Predicted phosphoesterase General function prediction only 154687419 Common gerAA GerAA RBAM_030180 15 COG0785 CcdA, Cytochrome c biogenesis protein Posttranslational modification, protein turnover, chaperones 154685451 Common yhaM YhaM RBAM_010170 47 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 154685192 Common yetM YetM RBAM_007370 72 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 154686556 Common resE ResE RBAM_021250 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 154687064 Nonpathogen ytzD YtzD RBAM_026360 1 None None None 154685552 Common yitZ YitZ RBAM_011180 11 None None None 154686885 Common glnM GlnM RBAM_024550 178 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154687818 Common ywkC YwkC RBAM_034190 2 COG0789 SoxR, Predicted transcriptional regulators Transcription 154686863 Common yrhD YrhD RBAM_024330 3 COG2427 COG2427, Uncharacterized conserved protein Function unknown 154685906 Common ctaA CtaA RBAM_014730 41 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 154686307 Common yoaC YoaC RBAM_018750 171 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 154687824 Common ywjI YwjI RBAM_034250 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 154686171 Nonpathogen - hypothetical protein RBAM_017380 1 COG5268 TrbD, Type IV secretory pathway, TrbD component Cell motility and secretion / Intracellular trafficking and secretion 154684531 Common serS SerS RBAM_000160 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 154684842 Common ycxD YcxD RBAM_003730 171 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 154686483 Common asnS AsnS RBAM_020510 249 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 154685001 Nonpathogen - hypothetical protein RBAM_005390 1 None None None 154684756 Common ydfN YdfN RBAM_002870 117 COG0778 NfnB, Nitroreductase Energy production and conversion 154685760 Common ykrM YkrM RBAM_013270 107 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 154687147 Common msmE MsmE RBAM_027190 66 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 154686411 Common yrkJ1 YrkJ1 RBAM_019790 109 COG0730 COG0730, Predicted permeases General function prediction only 154687199 Common ytiA YtiA RBAM_027710 129 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 154687085 Common ytsP YtsP RBAM_026570 81 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 154685183 Nonpathogen - hypothetical protein RBAM_007280 1 None None None 154686077 Common nusA NusA RBAM_016440 225 COG0195 NusA, Transcription elongation factor Transcription 154687510 Common opuCB OpuCB RBAM_031090 148 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 154684731 Common ybeF YbeF RBAM_002620 2 None None None 154685855 Common abh Abh RBAM_014220 16 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 154687354 Nonpathogen - hypothetical protein RBAM_029530 1 None None None 154685324 Common fhO FhO RBAM_008700 10 COG4485 COG4485, Predicted membrane protein Function unknown 154687517 Common - hypothetical protein RBAM_031160 135 None None None 154684680 Common gutB1 GutB1 RBAM_002060 208 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154685766 Common mtnA MtnA RBAM_013330 132 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 154685445 Nonpathogen yhaS YhaS RBAM_010110 1 None None None 154686915 Common ruvA RuvA RBAM_024850 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 154684982 Common - hypothetical protein RBAM_005200 25 COG5485 COG5485, Predicted ester cyclase General function prediction only 154686903 Common yrvE YrvE RBAM_024730 197 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 154686652 Common yqjE YqjE RBAM_022210 125 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 154687008 Common araP AraP RBAM_025800 144 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 154685523 Common gerPA GerPA RBAM_010890 2 None None None 154686572 Common ribE RibE RBAM_021410 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 154686655 Common yqjB YqjB RBAM_022240 85 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 154685356 Common yhbD YhbD RBAM_009220 3 None None None 154686767 Common yqfZ YqfZ RBAM_023370 2 None None None 154686985 Common xsa Xsa RBAM_025570 29 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 154687180 Common ytpB YtpB RBAM_027520 7 None None None 154685222 Common yfml Yfml RBAM_007670 244 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 154686047 Common fliL FliL RBAM_016140 20 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 154684890 Common ycnK YcnK RBAM_004210 30 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 154688159 Common - hypothetical protein RBAM_037640 114 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 154685382 Common yhcU YhcU RBAM_009480 2 None None None 154686741 Common yqgY YqgY RBAM_023110 3 None None None 154685691 Common xpf Xpf RBAM_012580 4 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154687192 Common ytkD YtkD RBAM_027640 11 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 154686666 Common buk Buk RBAM_022350 30 COG3426 COG3426, Butyrate kinase Energy production and conversion 154688185 Common yyaL YyaL RBAM_037900 105 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 154686182 Nonpathogen - hypothetical protein RBAM_017490 1 None None None 154687107 Common tyrS TyrS RBAM_026790 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154685765 Common ogt Ogt RBAM_013320 218 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 154686272 Common yngJ YngJ RBAM_018390 171 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 154687422 Common yvqC YvqC RBAM_030210 207 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154686484 Common aspB AspB RBAM_020520 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154685905 Common pycA PycA RBAM_014720 240 COG1038 PycA, Pyruvate carboxylase Energy production and conversion 154685740 Common ykoC YkoC RBAM_013070 73 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 154685814 Common ykyB YkyB RBAM_013810 3 None None None 154687743 Common ywqG YwqG RBAM_033440 10 COG3878 COG3878, Uncharacterized protein conserved in bacteria Function unknown 154684944 Common ydbC YdbC RBAM_004750 3 None None None 154684964 Common ydcA YdcA RBAM_004950 157 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 154687284 Common yueK YueK RBAM_028830 131 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 154686570 Common ribH RibH RBAM_021390 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 154686667 Common bcd Bcd RBAM_022360 130 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 154687809 Common ywlD YwlD RBAM_034100 65 COG1971 COG1971, Predicted membrane protein Function unknown 154685275 Common yfjR YfjR RBAM_008210 163 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 154687793 Common ywzB YwzB RBAM_033940 4 COG4836 COG4836, Predicted membrane protein Function unknown 154685679 Nonpathogen phrA PhrA RBAM_012460 1 None None None 154685868 Common mlnC MlnC RBAM_014350 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154684780 Common ycdH YcdH RBAM_003110 177 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 154685831 Common ykuT YkuT RBAM_013980 158 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 154687384 Common yusC YusC RBAM_029830 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 154687733 Common - hypothetical protein RBAM_033330 2 None None None 154685360 Common yhbH YhbH RBAM_009260 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 154687443 Common fhuG FhuG RBAM_030420 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154684608 Common yacM YacM RBAM_001150 196 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 154685369 Common yhcH YhcH RBAM_009350 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154684563 Common veg Veg RBAM_000530 18 COG4466 Veg, Uncharacterized protein conserved in bacteria Function unknown 154684524 Common gyrB GyrB RBAM_000060 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 154686216 Common sspN SspN RBAM_017830 1 None None None 154686068 Common pyrH PyrH RBAM_016350 243 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 154684841 Common ycxC YcxC RBAM_003720 42 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 154687042 Common phoR PhoR RBAM_026140 221 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 154686073 Common yluC YluC RBAM_016400 213 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 154685002 Common cspC CspC RBAM_005400 183 COG1278 CspC, Cold shock proteins Transcription 154686461 Common yptA YptA RBAM_020290 1 None None None 154686525 Common mtrB MtrB RBAM_020930 11 None None None 154686395 Common cgeB CgeB RBAM_019630 5 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 154685611 Common cotX CotX RBAM_011770 2 None None None 154685751 Common ykoU YkoU RBAM_013180 99 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 154687231 Common mcpA McpA RBAM_028300 158 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154687261 Common yuxK YuxK RBAM_028600 34 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 154685990 Common rsmB RsmB RBAM_015570 210 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 154685465 Common yhaA YhaA RBAM_010310 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 154684617 Common rpmGB RpmGB RBAM_001240 69 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 154685672 Common yjmB YjmB RBAM_012390 83 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 154686621 Common dsdA DsdA RBAM_021900 37 COG3048 DsdA, D-serine dehydratase Amino acid transport and metabolism 154685497 Common - hypothetical protein RBAM_010630 14 COG4815 COG4815, Uncharacterized protein conserved in bacteria Function unknown 154687763 Common ywoG YwoG RBAM_033640 108 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686115 Common spoVS SpoVS RBAM_016820 24 COG2359 SpoVS, Uncharacterized protein conserved in bacteria Function unknown 154685758 Common ykrK YkrK RBAM_013250 3 None None None 154686159 Common glnA GlnA RBAM_017260 230 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 154687403 Common - putative transcriptional regulator (LysR family) RBAM_030020 193 COG0583 LysR, Transcriptional regulator Transcription 154685102 Common groES GroES RBAM_006470 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 154685933 Common ylxA YlxA RBAM_015000 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 154684758 Common ydfP YdfP RBAM_002890 32 COG2259 COG2259, Predicted membrane protein Function unknown 154686071 Common cdsA CdsA RBAM_016380 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 154687138 Common ythQ YthQ RBAM_027100 2 COG4473 EcsB, Predicted ABC-type exoprotein transport system, permease component Intracellular trafficking and secretion 154685598 Common yjbP YjbP RBAM_011640 108 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 154686671 Common yqiQ YqiQ RBAM_022400 136 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 154685785 Common ykvM YkvM RBAM_013520 145 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 154687816 Common prfA PrfA RBAM_034170 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 154686841 Common yrkN YrkN RBAM_024110 8 COG0456 RimI, Acetyltransferases General function prediction only 154687690 Common lytD LytD RBAM_032900 6 COG4193 LytD, Beta- N-acetylglucosaminidase Carbohydrate transport and metabolism 154686289 Common - hypothetical protein RBAM_018570 5 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154685858 Common ykqB YkqB RBAM_014250 166 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 154684826 Common yckC YckC RBAM_003570 19 COG1714 COG1714, Predicted membrane protein/domain Function unknown 154685500 Common - hypothetical protein RBAM_010660 106 COG0393 COG0393, Uncharacterized conserved protein Function unknown 154687332 Common yutJ YutJ RBAM_029310 212 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 154685533 Common yisT YisT RBAM_010990 22 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154686756 Common pstBA PstBA RBAM_023260 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 154687815 Common ywkE YwkE RBAM_034160 226 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 154687571 Common ywjB YwjB RBAM_031700 78 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 154687957 Common ywbH YwbH RBAM_035580 1 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 154686838 Common yrkQ YrkQ RBAM_024080 120 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154687846 Common narK NarK RBAM_034470 101 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 154688150 Common - hypothetical protein RBAM_037550 228 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154684691 Common ybbF YbbF RBAM_002170 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154687987 Common ydhN YdhN RBAM_035880 32 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 154687399 Common yusP YusP RBAM_029980 226 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686435 Common ypgQ YpgQ RBAM_020030 59 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 154687039 Common ytaF YtaF RBAM_026110 15 COG1971 COG1971, Predicted membrane protein Function unknown 154686239 Nonpathogen - hypothetical protein RBAM_018060 1 None None None 154685127 Common yeaB YeaB RBAM_006720 214 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 154685169 Common - type I restriction-modification system methyltransferase subunit like protein RBAM_007140 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 154686001 Common sdaAB SdaAB RBAM_015680 165 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 154684663 Common ybxA YbxA RBAM_001700 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 154684686 Common feuA FeuA RBAM_002120 37 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 154687274 Common mrpF MrpF RBAM_028730 24 COG2212 MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit Inorganic ion transport and metabolism 154685354 Common yhbB YhbB RBAM_009200 14 None None None 154686445 Common ypdQ YpdQ RBAM_020130 46 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 154687415 Common yirB YirB RBAM_030140 1 None None None 154687786 Common moaA MoaA RBAM_033870 207 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 154685410 Common sigM SigM RBAM_009760 166 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154688183 Nonpathogen ynaF YnaF RBAM_037880 1 None None None 154685806 Nonpathogen - hypothetical protein RBAM_013730 1 None None None 154686846 Common - putative hydrolase RBAM_024160 101 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154685616 Nonpathogen - hypothetical protein RBAM_011820 1 None None None 154686428 Common dfrA DfrA RBAM_019960 148 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 154685607 Common fabI FabI RBAM_011730 235 COG0623 FabI, Enoyl- acyl-carrier-protein 154685600 Common tenA TenA RBAM_011660 77 COG0819 TenA, Putative transcription activator Transcription 154684897 Common ycsF YcsF RBAM_004280 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 154686188 Nonpathogen - hypothetical protein RBAM_017550 1 None None None 154686909 Common yrbG YrbG RBAM_024790 73 COG2323 COG2323, Predicted membrane protein Function unknown 154685492 Common yhxC YhxC RBAM_010580 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686379 Nonpathogen - hypothetical protein RBAM_019470 1 None None None 154687047 Common yjdF YjdF RBAM_026190 9 None None None 154687317 Common yumC YumC RBAM_029160 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 154688022 Nonpathogen - hypothetical protein RBAM_036230 1 None None None 154687550 Common yvfI YvfI RBAM_031490 150 COG2186 FadR, Transcriptional regulators Transcription 154686910 Common yrzE YrzE RBAM_024800 3 None None None 154686108 Common ymfM YmfM RBAM_016750 36 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 154685640 Nonpathogen - hypothetical protein RBAM_012070 1 None None None 154687966 Common gspA GspA RBAM_035670 35 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 154687647 Common - hypothetical protein RBAM_032470 1 None None None 154688093 Common yxaI YxaI RBAM_036940 19 COG1714 COG1714, Predicted membrane protein/domain Function unknown 154687904 Common - putative ABC transporter (ATP-binding protein) RBAM_035050 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154686035 Common flgC FlgC RBAM_016020 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 154685450 Common yhaN YhaN RBAM_010160 55 COG4717 COG4717, Uncharacterized conserved protein Function unknown 154686408 Common - putative oxidoreductase RBAM_019760 98 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 154688039 Common hutP HutP RBAM_036400 2 None None None 154687638 Common yvjB YvjB RBAM_032380 184 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 154686581 Common spoVAE1 SpoVAE1 RBAM_021500 7 None None None 154684669 Common ybaJ YbaJ RBAM_001760 19 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154686470 Common ypqE YpqE RBAM_020380 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 154684552 Common yabA YabA RBAM_000420 17 COG4467 COG4467, Uncharacterized protein conserved in bacteria Function unknown 154684772 Common yccK YccK RBAM_003030 206 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 154684599 Common yacF YacF RBAM_000910 217 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 154687226 Common yubB YubB RBAM_028250 199 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 154686769 Common yqfX YqfX RBAM_023390 2 None None None 154685870 Common mlnE MlnE RBAM_014370 218 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687069 Common ytxK YtxK RBAM_026410 32 COG0827 COG0827, Adenine-specific DNA methylase DNA replication, recombination, and repair 154685068 Common ydzE YdzE RBAM_006060 67 COG2962 RarD, Predicted permeases General function prediction only 154685915 Common ylbC YlbC RBAM_014820 58 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 154688030 Nonpathogen - hypothetical protein RBAM_036310 1 None None None 154685820 Common ykuJ YkuJ RBAM_013870 4 COG4703 COG4703, Uncharacterized protein conserved in bacteria Function unknown 154684535 Common yaaH YaaH RBAM_000210 85 COG3858 COG3858, Predicted glycosyl hydrolase General function prediction only 154687820 Common ywkA YwkA RBAM_034210 202 COG0281 SfcA, Malic enzyme Energy production and conversion 154687561 Common epsH EpsH RBAM_031600 218 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154686329 Common yocI YocI RBAM_018970 236 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 154684545 Common yaaN YaaN RBAM_000350 43 COG3853 TelA, Uncharacterized protein involved in tellurite resistance Inorganic ion transport and metabolism 154685885 Common ykzI YkzI RBAM_014520 3 None None None 154687668 Common tagO TagO RBAM_032680 169 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 154687062 Common ytkL YtkL RBAM_026340 106 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 154687755 Common mscL MscL RBAM_033560 129 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 154686752 Common rpmGA RpmGA RBAM_023220 80 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 154686867 Common mtn Mtn RBAM_024370 95 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 154687940 Common qoxC QoxC RBAM_035410 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 154685625 Common yjcG YjcG RBAM_011910 17 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 154684977 Common rsbX RsbX RBAM_005080 17 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 154684622 Common rplJ RplJ RBAM_001290 217 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 154685985 Common rpoZ RpoZ RBAM_015520 17 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 154687853 Nonpathogen phrF PhrF RBAM_034540 1 None None None 154687328 Common yutM YutM RBAM_029270 163 COG0316 IscA, Uncharacterized conserved protein Function unknown 154687800 Common atpF AtpF RBAM_034010 159 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 154685332 Common ygaD YgaD RBAM_008780 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154686267 Common yngF YngF RBAM_018340 187 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 154686601 Common ansB AnsB RBAM_021700 239 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 154687466 Common bdbC BdbC RBAM_030650 21 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 154685211 Common yfnD YfnD RBAM_007560 10 None None None 154685089 Common ydjK YdjK RBAM_006270 151 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686709 Common efp Efp RBAM_022780 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 154686648 Common yqjI YqjI RBAM_022170 188 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 154687522 Common - hypothetical protein RBAM_031210 184 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 154686133 Common baeM BaeM RBAM_017000 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686141 Common ymaC YmaC RBAM_017080 8 COG4195 COG4195, Phage-related replication protein General function prediction only 154684627 Common ybxF YbxF RBAM_001340 31 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 154686451 Common ypbQ YpbQ RBAM_020190 32 COG1755 COG1755, Uncharacterized protein conserved in bacteria Function unknown 154687529 Common tpiA TpiA RBAM_031280 220 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 154684738 Common purT PurT RBAM_002690 224 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 154684916 Common lrpC LrpC RBAM_004470 152 COG1522 Lrp, Transcriptional regulators Transcription 154686790 Common cdd Cdd RBAM_023600 121 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 154684857 Common gerKC GerKC RBAM_003880 15 None None None 154687557 Common epsL EpsL RBAM_031560 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 154687358 Common - multidrug resistance protein RBAM_029570 238 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154688051 Nonpathogen yxeF YxeF RBAM_036520 1 None None None 154686797 Common yqfB YqfB RBAM_023670 1 None None None 154684762 Common phoD PhoD RBAM_002930 63 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 154685329 Common sspE SspE RBAM_008750 3 None None None 154688062 Common yxdJ YxdJ RBAM_036630 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154685954 Common ylmE YlmE RBAM_015210 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 154687295 Common yukC YukC RBAM_028940 7 COG4499 COG4499, Predicted membrane protein Function unknown 154684790 Common yceI YceI RBAM_003210 206 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686857 Common yrhI YrhI RBAM_024270 68 COG1309 AcrR, Transcriptional regulator Transcription 154687836 Common ywjA YwjA RBAM_034370 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154685076 Common pbpE PbpE RBAM_006140 151 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 154686639 Common dfnA DfnA RBAM_022080 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 154685963 Common pyrR PyrR RBAM_015300 116 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 154688043 Common hutG HutG RBAM_036440 156 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 154685190 Common yetJ YetJ RBAM_007350 54 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 154686700 Common spoIIIAH SpoIIIAH RBAM_022690 9 None None None 154686688 Common recN RecN RBAM_022570 206 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 154687032 Common ytcG YtcG RBAM_026040 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 154687120 Common ytpT YtpT RBAM_026920 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 154687494 Common yvzC YvzC RBAM_030930 1 None None None 154686320 Common yobW YobW RBAM_018880 1 None None None 154688067 Common mrsE MrsE RBAM_036680 7 COG4200 COG4200, Uncharacterized protein conserved in bacteria Function unknown 154684933 Nonpathogen - hypothetical protein RBAM_004640 1 None None None 154687019 Common rplT RplT RBAM_025910 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 154685935 Common pbpB PbpB RBAM_015020 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 154686543 Common mecB MecB RBAM_021120 10 COG4862 MecA, Negative regulator of genetic competence, sporulation and motility Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion 154685695 Common xkdX XkdX RBAM_012620 1 None None None 154686160 Common - hypothetical protein RBAM_017270 1 None None None 154687874 Common - hypothetical protein RBAM_034750 6 COG4709 COG4709, Predicted membrane protein Function unknown 154684848 Common yclA YclA RBAM_003790 190 COG0583 LysR, Transcriptional regulator Transcription 154686334 Nonpathogen yocN YocN RBAM_019020 1 None None None 154685095 Common ydiF YdiF RBAM_006400 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 154686208 Common ccdC CcdC RBAM_017750 6 COG4846 CcdC, Membrane protein involved in cytochrome C biogenesis Posttranslational modification, protein turnover, chaperones 154686531 Common gpsA GpsA RBAM_020990 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 154685666 Common yjkB YjkB RBAM_012330 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 154687613 Common hisG HisG RBAM_032130 207 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 154686618 Nonpathogen - hypothetical protein RBAM_021870 1 None None None 154688076 Common iolB IolB RBAM_036770 52 COG3718 IolB, Uncharacterized enzyme involved in inositol metabolism Carbohydrate transport and metabolism 154685458 Common yhaH YhaH RBAM_010240 3 COG4980 GvpP, Gas vesicle protein General function prediction only 154687430 Common yvrA YvrA RBAM_030290 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 154687251 Common alaT AlaT RBAM_028500 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154685112 Common yjdJ YjdJ RBAM_006570 2 None None None 154687052 Common pfkA PfkA RBAM_026240 161 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 154685440 Common yhaX YhaX RBAM_010060 132 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154687673 Common tuaD TuaD RBAM_032730 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 154684675 Common kbaA KbaA RBAM_001820 3 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 154687506 Common opuBA OpuBA RBAM_031050 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 154687214 Common yuaF YuaF RBAM_028120 2 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 154685553 Common argC ArgC RBAM_011190 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 154688171 Common ydgI YdgI RBAM_037760 136 COG0778 NfnB, Nitroreductase Energy production and conversion 154688177 Common - hypothetical protein RBAM_037820 92 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 154686414 Common yokI1 YokI1 RBAM_019820 2 COG5444 COG5444, Uncharacterized conserved protein Function unknown 154687717 Common alsS AlsS RBAM_033170 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 154688161 Common yveB YveB RBAM_037660 51 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 154687195 Common ytkA YtkA RBAM_027670 3 None None None 154686773 Common yqfT YqfT RBAM_023430 2 None None None 154687535 Common yvbT YvbT RBAM_031340 112 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154684749 Common ybgJ YbgJ RBAM_002800 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 154686740 Common yqgZ YqgZ RBAM_023100 64 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 154687514 Common yvbI YvbI RBAM_031130 1 None None None 154687893 Common ywfA YwfA RBAM_034940 206 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154684692 Common ybbI YbbI RBAM_002180 84 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 154686207 Common ccdB CcdB RBAM_017740 214 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 154684649 Common rplF RplF RBAM_001560 242 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 154687608 Common hisF HisF RBAM_032080 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 154687116 Common ytxJ YtxJ RBAM_026880 7 None None None 154687095 Nonpathogen - hypothetical protein RBAM_026670 1 None None None 154686728 Common yqzG YqzG RBAM_022970 1 None None None 154687625 Common yvlD YvlD RBAM_032250 6 COG1950 COG1950, Predicted membrane protein Function unknown 154686240 Nonpathogen - hypothetical protein RBAM_018070 1 None None None 154685065 Common ydhB YdhB RBAM_006030 159 COG0730 COG0730, Predicted permeases General function prediction only 154687829 Common ywjG YwjG RBAM_034300 3 None None None 154687329 Common dapF DapF RBAM_029280 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 154687977 Common licC LicC RBAM_035780 40 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 154686969 Nonpathogen - hypothetical protein RBAM_025390 1 None None None 154686364 Common yodD YodD RBAM_019320 42 COG0400 COG0400, Predicted esterase General function prediction only 154685578 Common oppB OppB RBAM_011440 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 154686749 Common nhaC NhaC RBAM_023190 55 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 154688133 Nonpathogen - hypothetical protein RBAM_037340 1 None None None 154685706 Common ykcB YkcB RBAM_012730 19 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 154687459 Common yvgO YvgO RBAM_030580 1 None None None 154687264 Common yufM YufM RBAM_028630 222 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 154686490 Common panB PanB RBAM_020580 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 154687482 Common ytmM YtmM RBAM_030810 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154685986 Common yloI YloI RBAM_015530 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 154687597 Common yvcL YvcL RBAM_031970 54 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 154688204 Common yyaA YyaA RBAM_038090 184 COG1475 Spo0J, Predicted transcriptional regulators Transcription 154685377 Common yhcP YhcP RBAM_009430 1 None None None 154686676 Common mmgA MmgA RBAM_022450 183 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 154687168 Common ytrA YtrA RBAM_027400 142 COG1725 COG1725, Predicted transcriptional regulators Transcription 154684676 Common ybaN YbaN RBAM_001830 99 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154685287 Common acoL AcoL RBAM_008330 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 154684644 Common rplN RplN RBAM_001510 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 154687450 Common yvgK YvgK RBAM_030490 71 COG1910 COG1910, Periplasmic molybdate-binding protein/domain Inorganic ion transport and metabolism 154684577 Common yabN YabN RBAM_000670 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 154686225 Common - hypothetical protein RBAM_017920 1 None None None 154685565 Common comZ ComZ RBAM_011310 1 None None None 154686032 Common clpY ClpY RBAM_015990 211 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 154687902 Common - hypothetical protein RBAM_035030 2 None None None 154688054 Nonpathogen yxeC YxeC RBAM_036550 1 None None None 154687880 Nonpathogen - hypothetical protein RBAM_034810 1 None None None 154686172 Nonpathogen - hypothetical protein RBAM_017390 1 None None None 154686824 Common yqeJ YqeJ RBAM_023940 196 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 154685638 Nonpathogen - hypothetical protein RBAM_012050 1 None None None 154687298 Common yukF YukF RBAM_028970 41 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 154685178 Common yeeI YeeI RBAM_007230 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 154685206 Common yfnI YfnI RBAM_007510 61 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 154687489 Common yrdF YrdF RBAM_030880 12 COG2732 COG2732, Barstar, RNAse (barnase) inhibitor Transcription 154686200 Common yneB YneB RBAM_017670 38 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 154686684 Nonpathogen - hypothetical protein RBAM_022530 1 None None None 154684949 Common dctP DctP RBAM_004800 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 154687449 Common yvgJ YvgJ RBAM_030480 61 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 154687500 Common spaG SpaG RBAM_030990 4 COG4200 COG4200, Uncharacterized protein conserved in bacteria Function unknown 154684891 Common ycnL YcnL RBAM_004220 1 None None None 154687377 Common yurV YurV RBAM_029760 169 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 154686144 Common ebrA EbrA RBAM_017110 107 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154687684 Common tagG TagG RBAM_032840 121 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 154684560 Common rnmV RnmV RBAM_000500 21 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 154685801 Common ptsI PtsI RBAM_013680 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 154687789 Common ywmC YwmC RBAM_033900 16 None None None 154686104 Common ymfH YmfH RBAM_016710 191 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 154686405 Common rapA1 RapA1 RBAM_019730 8 None None None 154684729 Common glpQ GlpQ RBAM_002600 175 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 154687300 Common yukJ YukJ RBAM_028990 13 COG5634 COG5634, Uncharacterized conserved protein Function unknown 154685256 Common - hypothetical protein RBAM_008020 31 COG5438 COG5438, Predicted multitransmembrane protein Function unknown 154687875 Common - putative ABC transporter ATP-binding protein RBAM_034760 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154686464 Common ypsC YpsC RBAM_020320 136 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 154687289 Common yueF YueF RBAM_028880 205 COG0628 PerM, Predicted permease General function prediction only 154687587 Common yraM YraM RBAM_031870 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 154684908 Common mtlR MtlR RBAM_004390 35 COG3711 BglG, Transcriptional antiterminator Transcription 154686636 Common dfnB DfnB RBAM_022050 220 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154685778 Common motA MotA RBAM_013450 123 COG1291 MotA, Flagellar motor component Cell motility and secretion 154687225 Nonpathogen yjcN YjcN RBAM_028230 1 None None None 154684629 Common rpsG RpsG RBAM_001360 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 154686575 Common sipS SipS RBAM_021440 175 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 154687015 Common abnA AbnA RBAM_025870 38 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 154686681 Common - hypothetical protein RBAM_022500 5 COG3339 COG3339, Uncharacterized conserved protein Function unknown 154686981 Common yslB YslB RBAM_025530 7 None None None 154686782 Common dnaG DnaG RBAM_023520 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 154687439 Common - hypothetical protein RBAM_030380 1 None None None 154687861 Common speE SpeE RBAM_034620 111 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 154685655 Nonpathogen - hypothetical protein RBAM_012220 1 None None None 154685022 Common czcD CzcD RBAM_005600 216 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 154685793 Common ykvU YkvU RBAM_013600 20 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 154685171 Common - hypothetical protein RBAM_007160 136 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 154684901 Common kipA KipA RBAM_004320 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 154684889 Common ycnJ YcnJ RBAM_004200 55 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 154686908 Common spoVB SpoVB RBAM_024780 41 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 154687205 Common menE MenE RBAM_027770 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154687307 Common yuiI YuiI RBAM_029060 39 COG2819 COG2819, Predicted hydrolase of the alpha/beta superfamily General function prediction only 154684737 Common - putative Iron-containing alcohol dehydrogenase RBAM_002680 46 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 154686502 Common qcrC QcrC RBAM_020700 9 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 154686557 Common resD ResD RBAM_021260 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154688211 Common rpmH RpmH RBAM_038160 9 None None None 154685033 Common - putative phosphomethylpyrimidine kinase RBAM_005710 221 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 154684713 Common yxaC YxaC RBAM_002440 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 154686513 Common trpF TrpF RBAM_020810 193 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 154686631 Common dfnG DfnG RBAM_022000 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686961 Common leuD LeuD RBAM_025310 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 154687025 Common lytS LytS RBAM_025970 107 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 154685632 Nonpathogen - hypothetical protein RBAM_011990 3 None None None 154685366 Nonpathogen yhcE YhcE RBAM_009320 1 None None None 154687503 Common opuBD OpuBD RBAM_031020 156 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 154684724 Common csgA CsgA RBAM_002550 2 None None None 154686194 Common yndL YndL RBAM_017610 9 COG4195 COG4195, Phage-related replication protein General function prediction only 154685132 Common - putative sigma factor RBAM_006770 156 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154687580 Common - hypothetical protein RBAM_031790 3 None None None 154686611 Common yqkA YqkA RBAM_021800 45 COG2320 GrpB, Uncharacterized conserved protein Function unknown 154684873 Common yclM YclM RBAM_004040 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 154686549 Common ypbB YpbB RBAM_021180 10 COG4955 COG4955, Uncharacterized protein conserved in bacteria Function unknown 154687850 Common ywhL YwhL RBAM_034510 42 COG3391 COG3391, Uncharacterized conserved protein Function unknown 154687121 Common ytpR YtpR RBAM_026930 185 COG0073 ARC1, EMAP domain General function prediction only 154688149 Common - hypothetical protein RBAM_037540 51 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 154688117 Common yycP YycP RBAM_037180 1 None None None 154685037 Common yraB YraB RBAM_005750 122 COG0789 SoxR, Predicted transcriptional regulators Transcription 154685946 Common bpr Bpr RBAM_015130 118 COG4412 COG4412, Uncharacterized protein conserved in bacteria Function unknown 154687100 Common yraA YraA RBAM_026720 160 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 154686540 Common ypdC YpdC RBAM_021090 23 COG2339 COG2339, Predicted membrane protein Function unknown 154685413 Common cueR CueR RBAM_009790 68 COG0789 SoxR, Predicted transcriptional regulators Transcription 154685749 Common ykoM YkoM RBAM_013160 128 COG1846 MarR, Transcriptional regulators Transcription 154684984 Common lrpA LrpA RBAM_005220 129 COG1522 Lrp, Transcriptional regulators Transcription 154686429 Common thyB ThyB RBAM_019970 141 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 154686357 Common yojE YojE RBAM_019250 96 COG2962 RarD, Predicted permeases General function prediction only 154686598 Common - hypothetical protein RBAM_021670 1 None None None 154685221 Common yfmM YfmM RBAM_007660 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 154684988 Common - putative permease RBAM_005260 174 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154684598 Common folK FolK RBAM_000900 202 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 154687143 Common ytfP YtfP RBAM_027150 146 COG2081 COG2081, Predicted flavoproteins General function prediction only 154686311 Nonpathogen - hypothetical protein RBAM_018790 1 None None None 154684833 Common hxlR HxlR RBAM_003640 119 COG1733 COG1733, Predicted transcriptional regulators Transcription 154684898 Common ycsG YcsG RBAM_004290 23 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 154687676 Common tuaA TuaA RBAM_032760 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 154686730 Common comGG ComGG RBAM_022990 1 None None None 154686508 Common aroE AroE RBAM_020760 232 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 154687847 Common argS ArgS RBAM_034480 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154685357 Common yhbE YhbE RBAM_009230 4 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 154684583 Common spoIIE SpoIIE RBAM_000750 32 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 154686297 Common proH ProH RBAM_018650 215 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 154688147 Common - hypothetical protein RBAM_037520 227 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154687084 Common yttP YttP RBAM_026560 79 COG1309 AcrR, Transcriptional regulator Transcription 154685509 Common blt Blt RBAM_010750 200 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686245 Common yvrG YvrG RBAM_018120 221 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 154685244 Common nagP NagP RBAM_007900 54 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154685838 Common mobB MobB RBAM_014050 67 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 154687650 Common fliD FliD RBAM_032500 85 COG1345 FliD, Flagellar capping protein Cell motility and secretion 154684831 Common hxlB HxlB RBAM_003620 60 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 154684635 Common rplD RplD RBAM_001420 217 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 154685646 Common galT1 GalT1 RBAM_012130 14 COG4468 GalT, Galactose-1-phosphate uridyltransferase Carbohydrate transport and metabolism 154685262 Common aroC AroC RBAM_008080 50 COG0710 AroD, 3-dehydroquinate dehydratase Amino acid transport and metabolism 154685739 Common ykoB YkoB RBAM_013060 32 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154685049 Common yraD YraD RBAM_005870 4 COG5577 COG5577, Spore coat protein Cell envelope biogenesis, outer membrane 154687385 Common yusD YusD RBAM_029840 2 None None None 154685622 Common - ABC (ATP-binding cassette) transporter nucleotide-binding domain RBAM_011880 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154685979 Common ylnF YlnF RBAM_015460 146 COG1648 CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) Coenzyme metabolism 154686955 Common ysxC YsxC RBAM_025250 196 COG0218 COG0218, Predicted GTPase General function prediction only 154684569 Common gcaD GcaD RBAM_000590 237 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 154686539 Common sleB SleB RBAM_021080 48 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 154686807 Common dnaK DnaK RBAM_023770 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 154685546 Common - hypothetical protein RBAM_011120 2 None None None 154685009 Common yrkI YrkI RBAM_005470 107 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 154686139 Nonpathogen ymzB YmzB RBAM_017060 1 None None None 154686939 Common radC RadC RBAM_025090 178 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 154686374 Common deoD DeoD RBAM_019420 102 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 154687645 Common secA SecA RBAM_032450 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 154685339 Common - hypothetical protein RBAM_009040 55 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 154684612 Common cysS CysS RBAM_001190 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154687808 Common ywlE YwlE RBAM_034090 96 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 154686827 Common yqeH YqeH RBAM_023970 70 COG1161 COG1161, Predicted GTPases General function prediction only 154686711 Common yqhR YqhR RBAM_022800 3 None None None 154685514 Common addA AddA RBAM_010800 227 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 154685044 Common - hypothetical protein RBAM_005820 7 COG0398 COG0398, Uncharacterized conserved protein Function unknown 154684742 Nonpathogen ybfN YbfN RBAM_002730 1 None None None 154685014 Common ybfA YbfA RBAM_005520 65 COG1846 MarR, Transcriptional regulators Transcription 154686925 Common pheA PheA RBAM_024950 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 154685443 Common yhaU YhaU RBAM_010090 194 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 154687991 Common ydhS YdhS RBAM_035920 51 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 154686974 Common racE RacE RBAM_025460 189 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 154685062 Common ydgK YdgK RBAM_006000 146 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685408 Common yhdK YhdK RBAM_009740 1 None None None 154685027 Nonpathogen - hypothetical protein RBAM_005650 1 None None None 154684605 Common radA RadA RBAM_001120 215 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 154684559 Common yabE YabE RBAM_000490 35 COG3583 COG3583, Uncharacterized protein conserved in bacteria Function unknown 154687549 Common - hypothetical protein RBAM_031480 204 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 154687606 Common yvcC YvcC RBAM_032060 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154687351 Common pucH PucH RBAM_029500 213 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 154685840 Common moaD MoaD RBAM_014070 22 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 154686833 Common - hypothetical protein RBAM_024030 43 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 154688070 Common iolH IolH RBAM_036710 25 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 154686591 Common punA PunA RBAM_021600 160 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 154686876 Common yrrM YrrM RBAM_024460 109 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 154685808 Common ykwD YkwD RBAM_013750 78 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 154686772 Common yqfU YqfU RBAM_023420 49 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154686856 Common yrhJ YrhJ RBAM_024260 130 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 154684991 Common ydeM YdeM RBAM_005290 67 COG2030 MaoC, Acyl dehydratase Lipid metabolism 154687360 Common pucF PucF RBAM_029590 87 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 154686282 Common yoeA YoeA RBAM_018490 152 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 154685212 Common yfnC YfnC RBAM_007570 127 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 154686149 Common ymzA YmzA RBAM_017160 1 None None None 154687998 Common cydC CydC RBAM_035990 249 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 154686932 Common spoIVFB SpoIVFB RBAM_025020 66 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 154687969 Common - hypothetical protein RBAM_035700 2 None None None 154686526 Common mtrA MtrA RBAM_020940 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 154687101 Common - phi ETA orf 55-like protein RBAM_026730 4 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 154685411 Common yhdO YhdO RBAM_009770 120 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 154684765 Common pcp Pcp RBAM_002960 56 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 154685426 Common ymcC YmcC RBAM_009920 13 None None None 154687926 Common ywdA YwdA RBAM_035270 1 None None None 154687311 Common yuiE YuiE RBAM_029100 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 154685899 Common ylaJ YlaJ RBAM_014660 8 None None None 154687232 Common tlpA TlpA RBAM_028310 160 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154686231 Common uxuA UxuA RBAM_017980 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 154685396 Common yhdC YhdC RBAM_009620 1 None None None 154687398 Common yusO YusO RBAM_029970 128 COG1846 MarR, Transcriptional regulators Transcription 154685972 Common pyrE PyrE RBAM_015390 168 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 154688101 Common - putative xanthine dehydrogenase FAD-binding subunit RBAM_037020 55 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 154685890 Common ylaA2 YlaA2 RBAM_014570 1 None None None 154685730 Common ohrB OhrB RBAM_012970 87 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 154688122 Common rocF RocF RBAM_037230 134 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 154685399 Common ygxB YgxB RBAM_009650 31 None None None 154687108 Common acsA AcsA RBAM_026800 224 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 154685151 Common yerA YerA RBAM_006960 68 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 154685142 Common purC PurC RBAM_006870 221 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 154686154 Common cwlC CwlC RBAM_017210 177 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154687559 Common epsJ EpsJ RBAM_031580 202 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154685671 Common uxaC UxaC RBAM_012380 59 COG1904 UxaC, Glucuronate isomerase Carbohydrate transport and metabolism 154686619 Common yqjT YqjT RBAM_021880 13 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154687866 Common ywhB YwhB RBAM_034670 28 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 154685126 Common gabP GabP RBAM_006710 138 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 154686457 Common pbuX PbuX RBAM_020250 134 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 154687434 Common yvrE YvrE RBAM_030330 73 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 154686043 Common fliK FliK RBAM_016100 3 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 154686664 Common bkdAA BkdAA RBAM_022330 164 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 154686587 Common sigF SigF RBAM_021560 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154685428 Common yheI YheI RBAM_009940 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154686187 Common - putative chitin binding protein RBAM_017540 27 COG3397 COG3397, Uncharacterized protein conserved in bacteria Function unknown 154687155 Common ytvA YtvA RBAM_027270 112 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154686839 Common yrkP YrkP RBAM_024090 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154685055 Common ydfI YdfI RBAM_005930 225 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154685601 Common tenI TenI RBAM_011670 152 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 154686050 Common cheY CheY RBAM_016170 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 154688024 Common - hypothetical protein RBAM_036250 5 None None None 154685773 Common mtnD MtnD RBAM_013400 37 COG1791 COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 154686333 Nonpathogen yozN YozN RBAM_019010 1 None None None 154686869 Common yrzA YrzA RBAM_024390 2 None None None 154685480 Common yhfK YhfK RBAM_010460 68 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 154687648 Common fliT FliT RBAM_032480 3 None None None 154685078 Common ydhL YdhL RBAM_006160 212 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685520 Common gerPD GerPD RBAM_010860 2 None None None 154686931 Common rplU RplU RBAM_025010 215 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 154686654 Common yqjC YqjC RBAM_022230 93 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154685355 Common cspR CspR RBAM_009210 160 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 154685559 Common argF ArgF RBAM_011250 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 154684662 Common rplQ RplQ RBAM_001690 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 154687511 Common opuCA OpuCA RBAM_031100 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 154687956 Common ywbI YwbI RBAM_035570 193 COG0583 LysR, Transcriptional regulator Transcription 154685373 Common yhcK YhcK RBAM_009390 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 154687273 Common mrpE MrpE RBAM_028720 43 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 154687898 Common rocG RocG RBAM_034990 179 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 154685839 Common moaE MoaE RBAM_014060 165 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 154685624 Common yjcF YjcF RBAM_011900 63 COG2153 ElaA, Predicted acyltransferase General function prediction only 154686084 Common ribC RibC RBAM_016510 211 COG0196 RibF, FAD synthase Coenzyme metabolism 154684796 Common ycgB YcgB RBAM_003270 1 None None None 154687007 Common araQ AraQ RBAM_025790 143 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 154686446 Common sspL SspL RBAM_020140 1 None None None 154687686 Common - minor teichoic acid biosynthesis protein ggaA like protein RBAM_032860 90 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154684536 Common yaaI YaaI RBAM_000220 102 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 154687674 Common tuaC TuaC RBAM_032740 215 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154686013 Common ylxM YlxM RBAM_015800 28 COG2739 COG2739, Uncharacterized protein conserved in bacteria Function unknown 154686580 Common spoVAF SpoVAF RBAM_021490 15 None None None 154688182 Nonpathogen - hypothetical protein RBAM_037870 1 None None None 154687420 Common gerAB GerAB RBAM_030190 13 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 154686938 Common mreB MreB RBAM_025080 235 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 154684827 Common yckD YckD RBAM_003580 4 None None None 154686986 Common etfA EtfA RBAM_025580 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 154685608 Common yjbX YjbX RBAM_011740 1 None None None 154687182 Common ytoA YtoA RBAM_027540 184 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 154686089 Common ymxH YmxH RBAM_016560 14 COG1873 COG1873, Uncharacterized conserved protein Function unknown 154687000 Common ysgA YsgA RBAM_025720 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 154684633 Common rpsJ RpsJ RBAM_001400 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 154686288 Common - hypothetical protein RBAM_018560 65 COG0640 ArsR, Predicted transcriptional regulators Transcription 154684900 Common kipI KipI RBAM_004310 102 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 154685550 Common fosB FosB RBAM_011160 19 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154687128 Common ytnP YtnP RBAM_027000 67 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154685181 Common cotJC CotJC RBAM_007260 46 COG3546 COG3546, Mn-containing catalase Inorganic ion transport and metabolism 154686396 Common phy Phy RBAM_019640 19 COG4247 Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) Lipid metabolism 154684781 Common ycdI YcdI RBAM_003120 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 154687137 Common ytiP YtiP RBAM_027090 151 COG2252 COG2252, Permeases General function prediction only 154688158 Common ppaC PpaC RBAM_037630 63 COG1227 PPX1, Inorganic pyrophosphatase/exopolyphosphatase Energy production and conversion 154684564 Common sspF SspF RBAM_000540 10 None None None 154687444 Common fhuB FhuB RBAM_030430 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154685656 Common - hypothetical protein RBAM_012230 119 COG1285 SapB, Uncharacterized membrane protein Function unknown 154687281 Common degQ DegQ RBAM_028800 1 None None None 154686118 Common ymcB YmcB RBAM_016850 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 154686413 Common yokK YokK RBAM_019810 3 None None None 154686811 Common lepA LepA RBAM_023810 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 154687149 Common amyC AmyC RBAM_027210 152 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 154685436 Common yheB YheB RBAM_010020 24 COG4399 COG4399, Uncharacterized protein conserved in bacteria Function unknown 154685479 Common yhfJ YhfJ RBAM_010450 88 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 154686350 Common yojK YojK RBAM_019180 57 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 154686493 Common ypjH YpjH RBAM_020610 218 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 154685936 Common spoVD SpoVD RBAM_015030 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 154686874 Common yrrO YrrO RBAM_024440 140 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 154687190 Common ytlC YtlC RBAM_027620 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 154686736 Common comGA ComGA RBAM_023050 209 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 154687827 Common fbaA FbaA RBAM_034280 177 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 154686830 Common yqeF YqeF RBAM_024000 15 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 154685220 Common yfmO YfmO RBAM_007650 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154684607 Common yacL YacL RBAM_001140 46 COG4956 COG4956, Integral membrane protein (PIN domain superfamily) General function prediction only 154687041 Common polA PolA RBAM_026130 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 154687269 Common mrpA MrpA RBAM_028680 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 154686275 Common fenE FenE RBAM_018420 220 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154685971 Common pyrF PyrF RBAM_015380 152 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 154686646 Common rnz Rnz RBAM_022150 120 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 154685469 Common hemE HemE RBAM_010350 180 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 154686818 Common comEB ComEB RBAM_023880 95 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 154687801 Common atpE AtpE RBAM_034020 18 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 154684993 Common ywnA1 YwnA1 RBAM_005310 61 COG1959 COG1959, Predicted transcriptional regulator Transcription 154684523 Common yaaB YaaB RBAM_000050 11 None None None 154685180 Common cotJB CotJB RBAM_007250 9 None None None 154686074 Common proS ProS RBAM_016410 242 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154684703 Common - hypothetical protein RBAM_002340 5 None None None 154685934 Common ftsL FtsL RBAM_015010 6 COG4839 FtsL, Protein required for the initiation of cell division Cell division and chromosome partitioning 154687905 Common spsL SpsL RBAM_035060 137 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 154685166 Common swrC SwrC RBAM_007110 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 154687333 Common yuzD YuzD RBAM_029320 5 COG4837 COG4837, Uncharacterized protein conserved in bacteria Function unknown 154684992 Common - hypothetical protein RBAM_005300 42 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 154686649 Common yqjH YqjH RBAM_022180 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 154686901 Common relA RelA RBAM_024710 206 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 154685210 Common yfnE YfnE RBAM_007550 153 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 154685904 Common ftsW FtsW RBAM_014710 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 154685914 Common ylbB YlbB RBAM_014810 176 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 154687579 Common - hypothetical protein RBAM_031780 2 None None None 154685757 Common sspD SspD RBAM_013240 15 None None None 154685200 Nonpathogen - hypothetical protein RBAM_007450 1 None None None 154685619 Nonpathogen - hypothetical protein RBAM_011850 1 None None None 154685164 Common gatB GatB RBAM_007090 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 154686072 Common dxr Dxr RBAM_016390 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 154687764 Common ywoE YwoE RBAM_033650 64 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 154686173 Nonpathogen - hypothetical protein RBAM_017400 1 None None None 154684851 Common yclD1 YclD1 RBAM_003820 11 None None None 154687117 Common ytxH YtxH RBAM_026890 4 COG4980 GvpP, Gas vesicle protein General function prediction only 154685610 Common cotY CotY RBAM_011760 2 None None None 154685512 Common ydfS YdfS RBAM_010780 51 COG2323 COG2323, Predicted membrane protein Function unknown 154684755 Common ydfM YdfM RBAM_002860 197 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 154685794 Common stoA StoA RBAM_013610 150 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 154687051 Common pyk Pyk RBAM_026230 240 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 154687935 Common nfrA NfrA RBAM_035360 82 COG0778 NfnB, Nitroreductase Energy production and conversion 154688151 Common - hypothetical protein RBAM_037560 43 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 154685011 Common racX RacX RBAM_005490 84 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 154686278 Common fenB FenB RBAM_018450 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687092 Nonpathogen - hypothetical protein RBAM_026640 1 None None None 154686742 Common yqgX YqgX RBAM_023120 223 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154684591 Common yacD YacD RBAM_000830 137 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 154685384 Common yhcW YhcW RBAM_009500 187 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 154685233 Common citT CitT RBAM_007790 206 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 154685964 Common pyrP PyrP RBAM_015310 125 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 154685529 Common asnO AsnO RBAM_010950 171 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 154686840 Common yrkO YrkO RBAM_024100 58 COG2311 COG2311, Predicted membrane protein Function unknown 154684934 Common - hypothetical protein RBAM_004650 1 None None None 154687986 Common ydhM YdhM RBAM_035870 30 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 154684840 Nonpathogen - hypothetical protein RBAM_003710 1 None None None 154688198 Common - hypothetical protein RBAM_038030 27 COG4481 COG4481, Uncharacterized protein conserved in bacteria Function unknown 154687588 Common - putative transport protein RBAM_031880 147 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 154688061 Common yxdK YxdK RBAM_036620 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685219 Common yfmP YfmP RBAM_007640 143 COG0789 SoxR, Predicted transcriptional regulators Transcription 154685589 Common - hypothetical protein RBAM_011550 1 None None None 154686592 Common drm Drm RBAM_021610 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 154686940 Common maf Maf RBAM_025100 196 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 154687160 Common bceS BceS RBAM_027320 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154687731 Common ywqL YwqL RBAM_033310 70 COG1515 Nfi, Deoxyinosine 3'endonuclease (endonuclease V) DNA replication, recombination, and repair 154686689 Common ahrC AhrC RBAM_022580 81 COG1438 ArgR, Arginine repressor Transcription 154687662 Common comFA ComFA RBAM_032620 137 COG4098 comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) DNA replication, recombination, and repair 154685707 Common ykcC YkcC RBAM_012740 197 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154687296 Common yukD YukD RBAM_028950 2 COG5417 COG5417, Uncharacterized small protein Function unknown 154686899 Common yrvJ YrvJ RBAM_024690 189 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154686161 Common - hypothetical protein RBAM01751 RBAM_017280 1 None None None 154686321 Common yozA YozA RBAM_018890 177 COG0640 ArsR, Predicted transcriptional regulators Transcription 154685554 Common argJ ArgJ RBAM_011200 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 154688170 Common - hypothetical protein RBAM_037750 30 COG3759 COG3759, Predicted membrane protein Function unknown 154688176 Common - hypothetical protein RBAM_037810 16 None None None 154684819 Common nasE NasE RBAM_003500 75 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 154687314 Common yuiB YuiB RBAM_029130 3 None None None 154687308 Common yuiH YuiH RBAM_029070 115 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 154686532 Common engA EngA RBAM_021000 223 COG1160 COG1160, Predicted GTPases General function prediction only 154685694 Nonpathogen yomQ YomQ RBAM_012610 1 None None None 154686365 Common yodE YodE RBAM_019330 38 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154685665 Common yjkA YjkA RBAM_012320 70 COG0390 COG0390, ABC-type uncharacterized transport system, permease component General function prediction only 154686610 Common yqkB YqkB RBAM_021790 4 COG4918 COG4918, Uncharacterized protein conserved in bacteria Function unknown 154685075 Nonpathogen ydcS YdcS RBAM_006130 1 None None None 154685157 Common ligA LigA RBAM_007020 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 154687252 Common alaR AlaR RBAM_028510 25 COG1522 Lrp, Transcriptional regulators Transcription 154686774 Common yqfS YqfS RBAM_023440 104 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 154687440 Common oxdC OxdC RBAM_030390 15 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 154687258 Common kapD KapD RBAM_028570 16 COG5018 KapD, Inhibitor of the KinA pathway to sporulation, predicted exonuclease General function prediction only 154685188 Nonpathogen yezD YezD RBAM_007330 1 COG5583 COG5583, Uncharacterized small protein Function unknown 154685764 Common kinE KinE RBAM_013310 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154685111 Common ydjE YdjE RBAM_006560 197 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 154687089 Nonpathogen yokH YokH RBAM_026610 2 None None None 154688075 Common iolC IolC RBAM_036760 179 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 154686420 Common ypmS YpmS RBAM_019880 11 COG4698 COG4698, Uncharacterized protein conserved in bacteria Function unknown 154686183 Common yoaO YoaO RBAM_017500 1 None None None 154686761 Common - putative transposase RBAM_023310 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 154687016 Common ysdC YsdC RBAM_025880 90 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 154687129 Common trmB TrmB RBAM_027010 178 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 154686992 Common yshE YshE RBAM_025640 16 COG3766 COG3766, Predicted membrane protein Function unknown 154685678 Common rapA RapA RBAM_012450 5 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 154686768 Common ispG IspG RBAM_023380 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 154687577 Common - hypothetical protein RBAM_031760 1 None None None 154686046 Common - hypothetical protein RBAM_016130 26 COG1582 FlgEa, Uncharacterized protein, possibly involved in motility Cell motility and secretion 154684582 Common yabR YabR RBAM_000720 233 COG1098 VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) Translation, ribosomal structure and biogenesis 154684773 Common ycdA YcdA RBAM_003040 2 None None None 154687828 Common spo0F Spo0F RBAM_034290 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 154687718 Common alsR AlsR RBAM_033180 192 COG0583 LysR, Transcriptional regulator Transcription 154687323 Nonpathogen - hypothetical protein RBAM_029220 1 None None None 154686266 Common yngE YngE RBAM_018330 151 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 154686519 Common aroF AroF RBAM_020870 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 154686866 Common yrhA YrhA RBAM_024360 224 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 154684962 Common ydbS YdbS RBAM_004930 37 COG3402 COG3402, Uncharacterized conserved protein Function unknown 154687280 Common comQ ComQ RBAM_028790 20 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 154686295 Common gltC GltC RBAM_018630 191 COG0583 LysR, Transcriptional regulator Transcription 154684623 Common rplL RplL RBAM_001300 211 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 154687560 Common epsI EpsI RBAM_031590 20 COG5039 COG5039, Exopolysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 154685464 Common ecsC EcsC RBAM_010300 8 None None None 154687732 Common - hypothetical protein RBAM_033320 2 None None None 154687708 Common rbsR RbsR RBAM_033080 127 COG1609 PurR, Transcriptional regulators Transcription 154685720 Common ykgA YkgA RBAM_012870 87 COG1834 COG1834, N-Dimethylarginine dimethylaminohydrolase Amino acid transport and metabolism 154687753 Common ywpG YwpG RBAM_033540 1 None None None 154687167 Common ytrB YtrB RBAM_027390 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154685828 Common ykuQ YkuQ RBAM_013950 163 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 154687374 Common yncE YncE RBAM_029730 1 None None None 154685145 Common purL PurL RBAM_006900 234 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 154684578 Common yabO YabO RBAM_000680 48 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 154684628 Common rpsL RpsL RBAM_001350 243 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 154686555 Common sigX SigX RBAM_021240 142 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 154686600 Common mleN MleN RBAM_021690 75 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 154684668 Common rpsI RpsI RBAM_001750 248 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 154684907 Common ycsN YcsN RBAM_004380 181 COG4989 COG4989, Predicted oxidoreductase General function prediction only 154687353 Nonpathogen - hypothetical protein RBAM_029520 1 None None None 154685103 Common groEL GroEL RBAM_006480 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 154686780 Common cccA CccA RBAM_023500 3 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 154686097 Common - hypothetical protein RBAM_016640 4 None None None 154684883 Common gabR GabR RBAM_004140 173 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 154686134 Common baeN BaeN RBAM_017010 236 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687941 Common qoxB QoxB RBAM_035420 169 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 154687756 Common fabZ FabZ RBAM_033570 188 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 154687451 Common yvgL YvgL RBAM_030500 159 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 154684652 Common rpmD RpmD RBAM_001590 138 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 154686685 Common yncD YncD RBAM_022540 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 154684791 Common opuAA OpuAA RBAM_003220 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 154684959 Common ddl Ddl RBAM_004900 210 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 154687421 Common gerAC GerAC RBAM_030200 14 None None None 154684963 Common ydbT YdbT RBAM_004940 38 COG3428 COG3428, Predicted membrane protein Function unknown 154684915 Common ydzA YdzA RBAM_004460 16 None None None 154684763 Common tatAD TatAD RBAM_002940 2 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 154684979 Common - hypothetical protein RBAM_005100 1 None None None 154685170 Common - hypothetical protein RBAM_007150 56 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 154687578 Common - hypothetical protein RBAM_031770 1 None None None 154686520 Common cheR CheR RBAM_020880 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 154686389 Common yodT YodT RBAM_019570 235 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 154686406 Common uvrX UvrX RBAM_019740 62 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 154687709 Common rbsK RbsK RBAM_033090 217 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 154687646 Common yvyD YvyD RBAM_032460 178 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 154685021 Common - hypothetical protein RBAM_005590 45 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 154686131 Common baeJ BaeJ RBAM_016980 238 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686129 Common baeH BaeH RBAM_016960 130 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 154686900 Common yrvI YrvI RBAM_024700 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 154685400 Common spoVR SpoVR RBAM_009660 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 154686622 Common yqjQ YqjQ RBAM_021910 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 154686950 Common hemD HemD RBAM_025200 92 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 154688116 Nonpathogen - hypothetical protein RBAM_037170 1 None None None 154687493 Nonpathogen - hypothetical protein RBAM_030920 1 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 154687213 Common yuaG YuaG RBAM_028110 101 COG2268 COG2268, Uncharacterized protein conserved in bacteria Function unknown 154687903 Common - hypothetical protein RBAM_035040 2 None None None 154685664 Common yjjA YjjA RBAM_012310 45 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 154687224 Common - hypothetical protein RBAM_028220 3 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 154687527 Common eno Eno RBAM_031260 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 154688096 Common ahpF AhpF RBAM_036970 245 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 154688106 Nonpathogen - hypothetical protein RBAM_037070 1 None None None 154686647 Common zwf Zwf RBAM_022160 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 154685809 Common ykuA YkuA RBAM_013760 201 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 154686124 Common baeC BaeC RBAM_016910 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 154685513 Common addB AddB RBAM_010790 24 COG3857 AddB, ATP-dependent nuclease, subunit B DNA replication, recombination, and repair 154686434 Common ypgR YpgR RBAM_020020 32 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 154685980 Common yloA YloA RBAM_015470 91 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 154687349 Common yunF YunF RBAM_029480 78 COG1801 COG1801, Uncharacterized conserved protein Function unknown 154687781 Common ureB UreB RBAM_033820 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 154684685 Common feuB FeuB RBAM_002110 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154687683 Common tagH TagH RBAM_032830 249 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 154687504 Common opuBC OpuBC RBAM_031030 88 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 154688203 Common soj Soj RBAM_038080 236 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 154686637 Nonpathogen dfnX DfnX RBAM_022060 1 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154685817 Common ykuE YkuE RBAM_013840 110 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 154686781 Common rpoD RpoD RBAM_023510 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 154686542 Common gudB GudB RBAM_021110 179 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 154685414 Common yhdR YhdR RBAM_009800 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154687890 Common bacC BacC RBAM_034910 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686143 Common ebrB EbrB RBAM_017100 76 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154684820 Common nasD NasD RBAM_003510 215 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 154687729 Common ywrB YwrB RBAM_033290 113 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 154685376 Common yhcN YhcN RBAM_009420 9 None None None 154684941 Common ydbA YdbA RBAM_004720 10 None None None 154687872 Common rsfA RsfA RBAM_034730 3 None None None 154687630 Common uvrA UvrA RBAM_032300 244 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 154685096 Common ydiG YdiG RBAM_006410 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 154687925 Common thiD ThiD RBAM_035260 219 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 154684712 Common kdgR1 KdgR1 RBAM_002430 161 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 154686947 Common spoVID SpoVID RBAM_025170 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 154687026 Common ysaA YsaA RBAM_025980 117 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 154687851 Common ywhK YwhK RBAM_034520 39 COG3391 COG3391, Uncharacterized conserved protein Function unknown 154686440 Common degR DegR RBAM_020080 1 None None None 154685034 Common - hypothetical protein RBAM_005720 177 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 154686624 Common proI ProI RBAM_021930 215 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 154686193 Common yncF YncF RBAM_017600 133 COG0756 Dut, dUTPase Nucleotide transport and metabolism 154687772 Common spoIIQ SpoIIQ RBAM_033730 165 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 154685570 Common appD AppD RBAM_011360 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 154684832 Common hxlA HxlA RBAM_003630 58 COG0269 SgbH, 3-hexulose-6-phosphate synthase and related proteins Carbohydrate transport and metabolism 154685293 Common - hypothetical protein RBAM_008390 5 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 154684551 Common yaaT YaaT RBAM_000410 58 COG1774 COG1774, Uncharacterized homolog of PSP1 Function unknown 154687257 Common kapB KapB RBAM_028560 3 None None None 154684733 Common ybfE YbfE RBAM_002640 1 None None None 154686630 Common dfnH DfnH RBAM_021990 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686548 Common recQ RecQ RBAM_021170 223 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 154685633 Nonpathogen - hypothetical protein RBAM_012000 1 None None None 154687700 Common pgdS PgdS RBAM_033000 134 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 154686813 Common spoIIP SpoIIP RBAM_023830 15 None None None 154688012 Common yxjB YxjB RBAM_036130 53 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154686962 Common leuC LeuC RBAM_025320 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 154686501 Common ypjA YpjA RBAM_020690 16 COG4347 COG4347, Predicted membrane protein Function unknown 154685686 Common xkdB XkdB RBAM_012530 1 None None None 154687474 Common - hypothetical protein RBAM_030730 41 None None None 154688046 Common nupC NupC RBAM_036470 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 154684872 Nonpathogen - hypothetical protein RBAM_004030 1 None None None 154687569 Common slr Slr RBAM_031680 16 COG1396 HipB, Predicted transcriptional regulators Transcription 154686887 Common - hypothetical protein RBAM_024570 10 None None None 154684856 Common gerKA GerKA RBAM_003870 15 None None None 154685070 Common - hypothetical protein RBAM_006080 201 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154687083 Common hisJ HisJ RBAM_026550 35 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 154684533 Common dcK DcK RBAM_000190 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 154687725 Nonpathogen - hypothetical protein RBAM_033250 1 None None None 154687196 Common luxS LuxS RBAM_027680 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 154685453 Common prsA PrsA RBAM_010190 166 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 154685257 Common yfkN YfkN RBAM_008030 142 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 154687483 Common ytmL YtmL RBAM_030820 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 154687883 Common - hypothetical protein RBAM_034840 111 COG2855 COG2855, Predicted membrane protein Function unknown 154685272 Common yfkA YfkA RBAM_008180 9 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 154686727 Common yqxM YqxM RBAM_022960 1 None None None 154685582 Common - hypothetical protein RBAM_011480 19 COG1306 COG1306, Uncharacterized conserved protein Function unknown 154686400 Nonpathogen - hypothetical protein RBAM_019680 1 None None None 154685821 Common ykuK YkuK RBAM_013880 14 COG1978 COG1978, Uncharacterized protein conserved in bacteria Function unknown 154687263 Common yufL YufL RBAM_028620 189 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 154684693 Common ybbJ YbbJ RBAM_002190 9 COG0456 RimI, Acetyltransferases General function prediction only 154686347 Common yojN YojN RBAM_019150 145 COG0714 COG0714, MoxR-like ATPases General function prediction only 154685322 Common yfhM YfhM RBAM_008680 157 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154686452 Common bcsA BcsA RBAM_020200 58 COG3424 BcsA, Predicted naringenin-chalcone synthase Secondary metabolites biosynthesis, transport, and catabolism 154686731 Common comGF ComGF RBAM_023000 1 COG4940 ComGF, Competence protein ComGF Intracellular trafficking and secretion 154687934 Common - putative transposase RBAM_035350 136 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 154685251 Common treP TreP RBAM_007970 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 154686485 Common ypmB YpmB RBAM_020530 5 COG5353 COG5353, Uncharacterized protein conserved in bacteria Function unknown 154688132 Nonpathogen - hypothetical protein RBAM_037330 6 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154686206 Common ccdA CcdA RBAM_017730 129 COG0785 CcdA, Cytochrome c biogenesis protein Posttranslational modification, protein turnover, chaperones 154686079 Common ylxQ YlxQ RBAM_016460 27 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 154684677 Common glcP1 GlcP1 RBAM_002030 38 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 154686898 Common yrzK YrzK RBAM_024680 1 None None None 154685747 Common ykzB YkzB RBAM_013140 1 None None None 154687607 Common hisI HisI RBAM_032070 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 154686034 Common flgB FlgB RBAM_016010 95 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 154685579 Common oppC OppC RBAM_011450 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 154686042 Common ylxF YlxF RBAM_016090 6 COG3334 COG3334, Uncharacterized conserved protein Function unknown 154685566 Common yjzB YjzB RBAM_011320 1 None None None 154685007 Common yrkF YrkF RBAM_005450 161 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 154685738 Common ispA IspA RBAM_013050 148 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 154686184 Nonpathogen - hypothetical protein RBAM_017510 1 None None None 154686478 Common recU RecU RBAM_020460 18 COG3331 PrfA, Penicillin-binding protein-related factor A, putative recombinase General function prediction only 154687187 Common ytmB YtmB RBAM_027590 3 None None None 154684970 Common rsbR RsbR RBAM_005010 32 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154685156 Common pcrA PcrA RBAM_007010 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 154688053 Nonpathogen yxeD YxeD RBAM_036540 1 None None None 154685992 Common prpC PrpC RBAM_015590 140 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 154686201 Common ynzC YnzC RBAM_017680 17 COG4224 COG4224, Uncharacterized protein conserved in bacteria Function unknown 154685080 Common - putative transcriptional regulator (gntr family RBAM_006180 134 COG2186 FadR, Transcriptional regulators Transcription 154685363 Common yhcA YhcA RBAM_009290 216 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686351 Common yojJ YojJ RBAM_019190 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 154687400 Common yusQ YusQ RBAM_029990 33 None None None 154687869 Common ywgA YwgA RBAM_034700 7 COG3465 COG3465, Uncharacterized conserved protein Function unknown 154685207 Common yfnH YfnH RBAM_007520 191 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 154686993 Common mutSB MutSB RBAM_025650 203 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 154685319 Common yfhJ YfhJ RBAM_008650 2 None None None 154687441 Common yvrL YvrL RBAM_030400 1 None None None 154686554 Common rsiX RsiX RBAM_021230 2 None None None 154686743 Common yqgW YqgW RBAM_023130 1 None None None 154687465 Common - hypothetical protein RBAM_030640 2 None None None 154687779 Common ywnA YwnA RBAM_033800 60 COG1959 COG1959, Predicted transcriptional regulator Transcription 154685442 Common - putative lysine/ornithine N-monooxygenase RBAM_010080 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 154686467 Common cotD CotD RBAM_020350 2 None None None 154688078 Common iolR IolR RBAM_036790 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 154684544 Common xpaC XpaC RBAM_000340 9 COG4915 XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein General function prediction only 154687990 Common ydhR YdhR RBAM_035910 134 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 154685398 Common yhdE YhdE RBAM_009640 107 COG1959 COG1959, Predicted transcriptional regulator Transcription 154686103 Common - hypothetical protein RBAM_016700 111 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 154685229 Common - collagen like triple helix protein with GXT repeats RBAM_007750 3 None None None 154686599 Common mleA MleA RBAM_021680 198 COG0281 SfcA, Malic enzyme Energy production and conversion 154686875 Common yrrN YrrN RBAM_024450 138 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 154685836 Common moeB MoeB RBAM_014030 209 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 154685843 Common yknY YknY RBAM_014100 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 154685433 Common yheE YheE RBAM_009990 1 None None None 154685419 Common yhdW YhdW RBAM_009850 183 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 154684611 Common cysE CysE RBAM_001180 214 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 154685405 Common yhdF YhdF RBAM_009710 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686924 Common yrxA YrxA RBAM_024940 15 COG1827 COG1827, Predicted small molecule binding protein (contains 3H domain) General function prediction only 154687605 Common - putative two-component response regulator RBAM_032050 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154685750 Common ykoP YkoP RBAM_013170 5 None None None 154686226 Common ynfC YnfC RBAM_017930 1 None None None 154687350 Common yunG YunG RBAM_029490 2 None None None 154687361 Common bsn Bsn RBAM_029600 22 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 154688196 Common engD EngD RBAM_038010 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 154686855 Common yybF1 YybF1 RBAM_024250 166 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154687240 Common yugP YugP RBAM_028390 42 COG2738 COG2738, Predicted Zn-dependent protease General function prediction only 154688146 Common yycA YycA RBAM_037510 7 None None None 154686527 Common hupA HupA RBAM_020950 214 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 154686748 Common yqgQ YqgQ RBAM_023180 7 COG4483 COG4483, Uncharacterized protein conserved in bacteria Function unknown 154686861 Common yrhF YrhF RBAM_024310 5 COG5609 COG5609, Uncharacterized conserved protein Function unknown 154685748 Common ykoL YkoL RBAM_013150 1 None None None 154686514 Common trpC TrpC RBAM_020820 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 154687538 Common yvbW YvbW RBAM_031370 68 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 154686463 Common yqgA YqgA RBAM_020310 1 None None None 154686691 Common dxs Dxs RBAM_022600 230 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 154687639 Common ywoF YwoF RBAM_032390 41 None None None 154687744 Common ywqF YwqF RBAM_033450 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 154685630 Common yokI YokI RBAM_011970 2 COG5444 COG5444, Uncharacterized conserved protein Function unknown 154686168 Common xylA XylA RBAM_017350 70 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 154686230 Common kdgA KdgA RBAM_017970 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 154685425 Common pksA PksA RBAM_009910 64 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 154688148 Nonpathogen - hypothetical protein RBAM_037530 1 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 154687480 Common ytmO YtmO RBAM_030790 116 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154684741 Common psd Psd RBAM_002720 96 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 154686891 Common trmU TrmU RBAM_024610 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 154688141 Common yycE YycE RBAM_037460 12 None None None 154685000 Common - putitative fatty acid desaturase RBAM_005380 37 COG3239 DesA, Fatty acid desaturase Lipid metabolism 154685077 Common ydhK YdhK RBAM_006150 6 None None None 154687790 Common spoIID SpoIID RBAM_033910 46 COG2385 SpoIID, Sporulation protein and related proteins Cell division and chromosome partitioning 154685700 Common spoIISB SpoIISB RBAM_012670 1 None None None 154684983 Common yddR YddR RBAM_005210 30 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 154685129 Common yeaD YeaD RBAM_006740 49 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 154685038 Common - putative Na+/H+ antiporter RBAM_005760 34 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 154687237 Common yugU YugU RBAM_028360 139 COG0432 COG0432, Uncharacterized conserved protein Function unknown 154687942 Common qoxA QoxA RBAM_035430 150 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 154685951 Common ylmB YlmB RBAM_015180 202 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 154684987 Common - hypothetical protein RBAM_005250 4 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 154685066 Common bltD BltD RBAM_006040 27 COG0456 RimI, Acetyltransferases General function prediction only 154685412 Common yhdP YhdP RBAM_009780 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 154685898 Common ylaI YlaI RBAM_014650 5 COG4896 COG4896, Uncharacterized protein conserved in bacteria Function unknown 154686059 Common cheB CheB RBAM_016260 221 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 154686382 Common yozE YozE RBAM_019500 12 COG4479 COG4479, Uncharacterized protein conserved in bacteria Function unknown 154687590 Common yvdC YvdC RBAM_031900 8 COG1694 MazG, Predicted pyrophosphatase General function prediction only 154685135 Common yebC YebC RBAM_006800 1 None None None 154688111 Common - hypothetical protein RBAM_037120 68 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 154686213 Common citB CitB RBAM_017800 223 COG1048 AcnA, Aconitase A Energy production and conversion 154687044 Common mdh Mdh RBAM_026160 189 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 154685508 Common yhjN YhjN RBAM_010740 56 COG3180 AbrB, Putative ammonia monooxygenase General function prediction only 154687979 Common licR LicR RBAM_035800 46 COG3711 BglG, Transcriptional antiterminator Transcription 154684899 Common ycsI YcsI RBAM_004300 41 COG4336 COG4336, Uncharacterized conserved protein Function unknown 154687156 Common yttB YttB RBAM_027280 124 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685097 Common rex Rex RBAM_006420 56 COG2344 COG2344, AT-rich DNA-binding protein General function prediction only 154688085 Common yocF YocF RBAM_036860 135 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154686576 Common - hypothetical protein RBAM_021450 1 COG4846 CcdC, Membrane protein involved in cytochrome C biogenesis Posttranslational modification, protein turnover, chaperones 154686031 Common clpQ ClpQ RBAM_015980 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 154684869 Common yclK YclK RBAM_004000 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154686312 Common - putative transcriptional regulator RBAM_018800 13 COG1846 MarR, Transcriptional regulators Transcription 154685056 Common ydfJ YdfJ RBAM_005940 67 COG2409 COG2409, Predicted drug exporters of the RND superfamily General function prediction only 154684811 Common cah Cah RBAM_003420 20 COG3458 COG3458, Acetyl esterase (deacetylase) Secondary metabolites biosynthesis, transport, and catabolism 154688059 Common yxdM YxdM RBAM_036600 17 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 154686712 Common yqhQ YqhQ RBAM_022810 31 COG3872 COG3872, Predicted metal-dependent enzyme General function prediction only 154687961 Common - putative Zn-dependent protease RBAM_035620 5 COG5504 COG5504, Predicted Zn-dependent protease Posttranslational modification, protein turnover, chaperones 154687976 Common licA LicA RBAM_035770 31 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 154685245 Common yfmQ YfmQ RBAM_007910 1 None None None 154686256 Common yxjC YxjC RBAM_018230 41 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 154686028 Common topA TopA RBAM_015950 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 154684634 Common rplC RplC RBAM_001410 248 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 154687247 Common yugK YugK RBAM_028460 170 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 154684929 Common rapH RapH RBAM_004600 9 None None None 154686251 Common bmyA BmyA RBAM_018180 243 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686507 Common ypiA YpiA RBAM_020750 98 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 154684830 Common nucA NucA RBAM_003610 2 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 154685263 Common yfkL YfkL RBAM_008090 12 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686313 Common - hypothetical protein RBAM_018810 1 None None None 154687171 Common nrsE NrsE RBAM_027430 4 COG0640 ArsR, Predicted transcriptional regulators Transcription 154687598 Common yvcK YvcK RBAM_031980 99 COG0391 COG0391, Uncharacterized conserved protein Function unknown 154686296 Common proJ ProJ RBAM_018640 200 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 154687916 Common ywdL YwdL RBAM_035170 5 None None None 154685345 Common - hypothetical protein RBAM_009100 41 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 154687290 Common yueE YueE RBAM_028890 3 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 154686358 Common yozR YozR RBAM_019260 1 None None None 154686757 Common pstA PstA RBAM_023270 233 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 154687788 Common ywmD YwmD RBAM_033890 20 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 154686008 Common acpA AcpA RBAM_015750 175 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154686029 Common gid Gid RBAM_015960 194 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 154685886 Common suhB SuhB RBAM_014530 205 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 154685945 Common ftsZ FtsZ RBAM_015120 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 154686826 Common aroD AroD RBAM_023960 224 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 154685013 Common - putative transcriptional regulator RBAM_005510 20 COG1695 COG1695, Predicted transcriptional regulators Transcription 154687968 Common menA MenA RBAM_035690 114 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 154685093 Common ydiD YdiD RBAM_006380 205 COG0456 RimI, Acetyltransferases General function prediction only 154685727 Common proA ProA RBAM_012940 191 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 154686367 Common - hypothetical protein RBAM_019350 23 COG5520 COG5520, O-Glycosyl hydrolase Cell envelope biogenesis, outer membrane 154685276 Common - hypothetical protein RBAM_008220 1 None None None 154685387 Common glpP GlpP RBAM_009530 26 COG1954 GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) Transcription 154687581 Common - hypothetical protein RBAM_031800 1 None None None 154686954 Common ysxD YsxD RBAM_025240 1 None None None 154687876 Common - hypothetical protein RBAM_034770 6 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 154686762 Common pbpA PbpA RBAM_023320 201 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 154684774 Common ycdB YcdB RBAM_003050 2 None None None 154685030 Common - hypothetical protein RBAM_005680 5 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 154686613 Common yqjY YqjY RBAM_021820 13 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 154684906 Common pbpC PbpC RBAM_004370 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 154687017 Common ysdB YsdB RBAM_025890 2 None None None 154687127 Common malS MalS RBAM_026990 198 COG0281 SfcA, Malic enzyme Energy production and conversion 154684823 Common nasA NasA RBAM_003540 189 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 154686896 Common aspS AspS RBAM_024660 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154684914 Common ydaH YdaH RBAM_004450 11 None None None 154685330 Common ygaB YgaB RBAM_008760 1 None None None 154685174 Common - hypothetical protein RBAM_007190 2 None None None 154685564 Common med Med RBAM_011300 92 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 154686995 Common yshB YshB RBAM_025670 14 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 154687775 Common ywnF YwnF RBAM_033760 1 None None None 154687704 Common ywsC YwsC RBAM_033040 13 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 154684537 Common yaaJ YaaJ RBAM_000230 214 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 154686265 Common yngC YngC RBAM_018320 108 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 154687410 Common yusZ YusZ RBAM_030090 234 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 154687659 Common yvyF YvyF RBAM_032590 9 None None None 154686283 Common yoeB YoeB RBAM_018500 1 None None None 154684624 Common ybxB YbxB RBAM_001310 101 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 154686775 Common yqfR YqfR RBAM_023450 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 154687802 Common atpB AtpB RBAM_034030 206 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 154686095 Common ymfA YmfA RBAM_016620 154 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 154684868 Common yclJ YclJ RBAM_003990 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154684879 Common ycnC YcnC RBAM_004100 3 COG1309 AcrR, Transcriptional regulator Transcription 154687803 Common atpI AtpI RBAM_034040 5 None None None 154684956 Common ydbO1 YdbO1 RBAM_004870 122 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 154688006 Nonpathogen yxkC YxkC RBAM_036070 2 None None None 154685736 Common - putative Catabolite gene activator RBAM_013030 33 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 154687228 Common yulF YulF RBAM_028270 166 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 154685336 Common perR PerR RBAM_008820 209 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 154685909 Common ctaD CtaD RBAM_014760 170 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 154687589 Common yvdD YvdD RBAM_031890 131 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 154687492 Common yvaK YvaK RBAM_030910 53 COG1647 COG1647, Esterase/lipase General function prediction only 154687784 Common ywmF YwmF RBAM_033850 1 None None None 154687754 Common ywpF YwpF RBAM_033550 4 None None None 154687798 Common atpA AtpA RBAM_033990 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 154687930 Nonpathogen ywcI YwcI RBAM_035310 1 None None None 154687093 Common - hypothetical protein RBAM_026650 7 None None None 154687119 Common murC MurC RBAM_026910 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 154686105 Common ymfI YmfI RBAM_016720 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686686 Common spo0A Spo0A RBAM_022550 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154686081 Common ylxP YlxP RBAM_016480 37 COG1550 COG1550, Uncharacterized protein conserved in bacteria Function unknown 154685609 Common cotZ CotZ RBAM_011750 2 None None None 154687077 Common ytcI YtcI RBAM_026490 223 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 154684861 Common yxeM YxeM RBAM_003920 182 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 154686135 Common baeR BaeR RBAM_017020 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686237 Common yndJ YndJ RBAM_018040 4 None None None 154686678 Common yqiI YqiI RBAM_022470 182 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 154684592 Common cysK CysK RBAM_000840 226 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 154686859 Common yrzI YrzI RBAM_024290 1 None None None 154685254 Common yfkO YfkO RBAM_008000 100 COG0778 NfnB, Nitroreductase Energy production and conversion 154685380 Common yhcS YhcS RBAM_009460 34 COG3764 SrtA, Sortase (surface protein transpeptidase) Cell envelope biogenesis, outer membrane 154685961 Common lspA LspA RBAM_015280 155 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 154688197 Common yyaE YyaE RBAM_038020 185 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 154685853 Nonpathogen ykpC YkpC RBAM_014200 1 None None None 154688074 Common iolD IolD RBAM_036750 221 COG3962 COG3962, Acetolactate synthase Amino acid transport and metabolism 154685124 Common ydjO YdjO RBAM_006690 2 None None None 154684935 Common mntH MntH RBAM_004660 106 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 154687914 Common spsB SpsB RBAM_035150 3 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 154687319 Common guaC GuaC RBAM_029180 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 154686941 Common spoIIB SpoIIB RBAM_025110 1 None None None 154685327 Common yfhS YfhS RBAM_008730 3 None None None 154687913 Common spsC SpsC RBAM_035140 198 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 154685213 Common yfnA YfnA RBAM_007580 180 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154684816 Common ycgP YcgP RBAM_003470 44 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 154685228 Nonpathogen - hypothetical protein RBAM_007740 1 None None None 154685857 Common ykqA YkqA RBAM_014240 5 COG3703 ChaC, Uncharacterized protein involved in cation transport Inorganic ion transport and metabolism 154687253 Common yugF YugF RBAM_028520 148 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154686458 Common xpt Xpt RBAM_020260 75 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 154686564 Common dacB DacB RBAM_021330 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 154684654 Common secY SecY RBAM_001610 216 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 154686322 Common yocA YocA RBAM_018900 8 None None None 154686657 Common yqiZ YqiZ RBAM_022260 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 154686795 Common yqfD YqfD RBAM_023650 15 None None None 154685199 Common - hypothetical protein RBAM_007440 16 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 154685054 Common ydfH YdfH RBAM_005920 149 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 154685833 Common rok Rok RBAM_014000 1 None None None 154687675 Common tuaB TuaB RBAM_032750 94 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 154687835 Common ywjC YwjC RBAM_034360 1 None None None 154685721 Common ykhA YkhA RBAM_012880 137 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 154687058 Common ytrI YtrI RBAM_026300 4 None None None 154685623 Common - abrB-like protein RBAM_011890 9 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 154686524 Common hepS HepS RBAM_020920 4 None None None 154687537 Common yvbV YvbV RBAM_031360 171 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 154688060 Common yxdL YxdL RBAM_036610 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 154687436 Common yvrH1 YvrH1 RBAM_030350 226 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154686263 Common yngA YngA RBAM_018300 16 COG2246 COG2246, Predicted membrane protein Function unknown 154685588 Common yjbG YjbG RBAM_011540 87 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 154685822 Common ykzF YkzF RBAM_013890 2 None None None 154685969 Common pyrK PyrK RBAM_015360 86 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 154686421 Common ypmR YpmR RBAM_019890 20 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 154687615 Common yvpB YvpB RBAM_032150 4 COG4990 COG4990, Uncharacterized protein conserved in bacteria Function unknown 154685824 Common ccpC CcpC RBAM_013910 192 COG0583 LysR, Transcriptional regulator Transcription 154687161 Common bceR BceR RBAM_027330 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154687088 Common ywdH YwdH RBAM_026600 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154686794 Common phoH PhoH RBAM_023640 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 154684938 Common ydaT YdaT RBAM_004690 9 COG4876 COG4876, Uncharacterized protein conserved in bacteria Function unknown 154685154 Common yerD YerD RBAM_006990 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 154686697 Common yqhY YqhY RBAM_022660 42 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 154688066 Common mrsG MrsG RBAM_036670 4 COG4200 COG4200, Uncharacterized protein conserved in bacteria Function unknown 154684961 Common ydbR YdbR RBAM_004920 242 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 154685289 Common sspH SspH RBAM_008350 3 None None None 154686393 Nonpathogen cgeC CgeC RBAM_019610 1 None None None 154686492 Common cca Cca RBAM_020600 214 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 154685804 Common mcpC McpC RBAM_013710 180 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154687376 Common yurU YurU RBAM_029750 187 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 154685677 Common yjoA YjoA RBAM_012440 4 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154684782 Common yceA YceA RBAM_003130 181 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 154687140 Common ytzE YtzE RBAM_027120 2 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 154687150 Common melA MelA RBAM_027220 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 154686433 Common ilvD IlvD RBAM_020010 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 154688009 Nonpathogen yxjJ YxjJ RBAM_036100 1 None None None 154684966 Common ydcC YdcC RBAM_004970 6 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 154685928 Common ylbO YlbO RBAM_014950 4 COG4026 COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease General function prediction only 154685160 Common sapB SapB RBAM_007050 114 COG1285 SapB, Uncharacterized membrane protein Function unknown 154685490 Common hemAT HemAT RBAM_010560 157 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154684632 Common ybaC YbaC RBAM_001390 23 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154685104 Common ykuG YkuG RBAM_006490 12 COG3409 COG3409, Putative peptidoglycan-binding domain-containing protein Cell envelope biogenesis, outer membrane 154685995 Common rpe Rpe RBAM_015620 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 154686907 Common yrzD YrzD RBAM_024770 4 None None None 154686348 Common yojM YojM RBAM_019160 83 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 154684797 Common amyE AmyE RBAM_003280 40 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 154685704 Common ykbA YkbA RBAM_012710 188 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154686831 Common - putative polysaccharide deacetylase RBAM_024010 112 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154684638 Common rpsS RpsS RBAM_001450 241 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 154686665 Common lpdV LpdV RBAM_022340 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 154687761 Common spoIIID SpoIIID RBAM_033620 15 None None None 154687321 Nonpathogen - hypothetical protein RBAM_029200 4 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 154686003 Common recG RecG RBAM_015700 210 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 154687740 Common ywqJ YwqJ RBAM_033410 3 COG5444 COG5444, Uncharacterized conserved protein Function unknown 154687906 Common spsK SpsK RBAM_035070 198 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 154687183 Common ytnA YtnA RBAM_027550 184 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 154684580 Common yabQ YabQ RBAM_000700 9 None None None 154684958 Common ydbP YdbP RBAM_004890 202 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 154685896 Common ylaG YlaG RBAM_014630 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 154684752 Common - hypothetical protein RBAM_002830 1 None None None 154687749 Common ywqA YwqA RBAM_033500 143 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 154687136 Common ytjP YtjP RBAM_027080 149 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 154684942 Common gsiB GsiB RBAM_004730 9 COG3729 GsiB, General stress protein General function prediction only 154685197 Common - putative ABC transporter (ATP-binding protein) RBAM_007420 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154688103 Common - putative xanthine dehydrogenase RBAM_037040 33 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 154686110 Common cinA CinA RBAM_016770 212 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 154686973 Common gerM GerM RBAM_025450 9 COG5401 COG5401, Spore germination protein General function prediction only 154687858 Nonpathogen - hypothetical protein RBAM_034590 1 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 154684759 Common ydfQ YdfQ RBAM_002900 20 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 154684884 Common gabT GabT RBAM_004150 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 154685937 Common murE MurE RBAM_015040 214 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 154687118 Common ytxG YtxG RBAM_026900 10 COG4768 COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain General function prediction only 154685561 Common yjzD YjzD RBAM_011270 1 None None None 154685315 Common yfhI YfhI RBAM_008610 165 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685795 Common ykvW YkvW RBAM_013620 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 154687040 Common mutM MutM RBAM_026120 182 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 154685362 Common yhbJ YhbJ RBAM_009280 120 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 154687424 Common yvqF YvqF RBAM_030230 10 COG4758 COG4758, Predicted membrane protein Function unknown 154685515 Common sbcD SbcD RBAM_010810 123 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 154685903 Common ylaN YlaN RBAM_014700 7 COG4838 COG4838, Uncharacterized protein conserved in bacteria Function unknown 154687105 Common - putative amino acid permease RBAM_026770 108 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 154686868 Common yrrT YrrT RBAM_024380 9 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154686844 Common yrdA YrdA RBAM_024140 5 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154688020 Common yxiO YxiO RBAM_036210 74 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 154685771 Common mtnX MtnX RBAM_013380 17 COG4359 COG4359, Uncharacterized conserved protein Function unknown 154685670 Common yjlD YjlD RBAM_012370 198 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 154687334 Common yutI YutI RBAM_029330 101 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 154685711 Common dppB DppB RBAM_012780 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 154686989 Common ysiA YsiA RBAM_025610 98 COG1309 AcrR, Transcriptional regulator Transcription 154684828 Common yckE YckE RBAM_003590 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 154685618 Common yjcD YjcD RBAM_011840 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 154686417 Common msrB MsrB RBAM_019850 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 154687959 Common ywbE YwbE RBAM_035600 22 COG4895 COG4895, Uncharacterized conserved protein Function unknown 154686586 Common spoVAA SpoVAA RBAM_021550 4 None None None 154687433 Common yvrD YvrD RBAM_030320 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154685298 Common ctaO CtaO RBAM_008440 166 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 154687429 Common yvqK YvqK RBAM_030280 131 COG2096 COG2096, Uncharacterized conserved protein Function unknown 154685602 Common goxB GoxB RBAM_011680 163 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 154685495 Common - hypothetical protein RBAM_010610 9 COG5646 COG5646, Uncharacterized conserved protein Function unknown 154687520 Common - hypothetical protein RBAM_031190 38 None None None 154687233 Common mcpB McpB RBAM_028320 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 154687413 Common cssR CssR RBAM_030120 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154686323 Common yozB YozB RBAM_018910 22 COG2322 COG2322, Predicted membrane protein Function unknown 154686817 Common comEC ComEC RBAM_023870 168 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 154688082 Nonpathogen yxcA YxcA RBAM_036830 1 None None None 154687067 Common moaB MoaB RBAM_026390 189 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 154687649 Common fliS FliS RBAM_032490 86 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 154686865 Common yrhB YrhB RBAM_024350 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 154684661 Common rpoA RpoA RBAM_001680 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 154687813 Nonpathogen ywlA YwlA RBAM_034140 1 None None None 154685372 Common yhcJ YhcJ RBAM_009380 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 154686153 Common ymaB YmaB RBAM_017200 8 COG4112 COG4112, Predicted phosphoesterase (MutT family) General function prediction only 154687696 Common ywtG YwtG RBAM_032960 201 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686573 Common ribD RibD RBAM_021420 234 COG1985 RibD, Pyrimidine reductase, riboflavin biosynthesis Coenzyme metabolism 154685446 Common yhaR YhaR RBAM_010120 163 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 154687860 Common speB SpeB RBAM_034610 160 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 154686087 Common ylxY YlxY RBAM_016540 111 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154686286 Common ggt Ggt RBAM_018540 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 154685595 Common yjbM YjbM RBAM_011610 35 COG2357 COG2357, Uncharacterized protein conserved in bacteria Function unknown 154687593 Common yvcT YvcT RBAM_031930 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 154688091 Common - hypothetical protein RBAM_036920 33 COG0640 ArsR, Predicted transcriptional regulators Transcription 154685120 Common ydjL YdjL RBAM_006650 202 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154686014 Common ffh Ffh RBAM_015810 246 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 154686447 Common ypcP YpcP RBAM_020150 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 154686273 Common yngK YngK RBAM_018400 40 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 154684994 Common ywnB YwnB RBAM_005320 56 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 154685816 Common ykuD YkuD RBAM_013830 94 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 154685249 Nonpathogen ydgA YdgA RBAM_007950 1 None None None 154686148 Nonpathogen ymzC YmzC RBAM_017150 1 None None None 154685189 Nonpathogen - hypothetical protein RBAM_007340 1 None None None 154686360 Common yodA YodA RBAM_019280 32 None None None 154687049 Common ytvI YtvI RBAM_026210 82 COG0628 PerM, Predicted permease General function prediction only 154687728 Common ywrC YwrC RBAM_033280 155 COG1522 Lrp, Transcriptional regulators Transcription 154687629 Common yvkN YvkN RBAM_032290 1 None None None 154686186 Common - hypothetical protein RBAM_017530 70 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154685882 Common speA SpeA RBAM_014490 107 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 154684684 Common feuC FeuC RBAM_002100 186 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154685438 Common yhaZ YhaZ RBAM_010040 35 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 154685234 Common yflP YflP RBAM_007800 72 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 154687070 Common tpx Tpx RBAM_026420 124 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 154685877 Common pdhC PdhC RBAM_014440 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 154688181 Common yyaL1 YyaL1 RBAM_037860 104 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 154685639 Common - hypothetical protein RBAM_012060 2 None None None 154686948 Common hemL HemL RBAM_025180 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 154686366 Common yodF YodF RBAM_019340 160 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 154687276 Common yuxO YuxO RBAM_028750 94 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 154684643 Common rpsQ RpsQ RBAM_001500 231 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 154685502 Common yhjC YhjC RBAM_010680 7 None None None 154686247 Common ynfF YnfF RBAM_018140 12 COG5520 COG5520, O-Glycosyl hydrolase Cell envelope biogenesis, outer membrane 154688108 Common - hypothetical protein RBAM_037090 2 None None None 154685948 Common sigE SigE RBAM_015150 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154685503 Common yhjD YhjD RBAM_010690 2 None None None 154686703 Common spoIIIAE SpoIIIAE RBAM_022720 15 None None None 154685149 Common purH PurH RBAM_006940 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 154685141 Common purB PurB RBAM_006860 241 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 154687591 Common yvdB YvdB RBAM_031910 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 154686912 Common tgt Tgt RBAM_024820 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 154685242 Common yflH YflH RBAM_007880 8 None None None 154687937 Common ysnE YsnE RBAM_035380 61 COG0456 RimI, Acetyltransferases General function prediction only 154687948 Nonpathogen - hypothetical protein RBAM_035490 1 None None None 154684986 Nonpathogen - hypothetical protein RBAM_005240 1 None None None 154686121 Common mutS MutS RBAM_016880 205 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 154686359 Nonpathogen - hypothetical protein RBAM_019270 1 None None None 154686858 Common yrhH YrhH RBAM_024280 17 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 154687689 Common tagB TagB RBAM_032890 36 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 154688029 Nonpathogen - hypothetical protein RBAM_036300 1 None None None 154687068 Common ackA AckA RBAM_026400 162 COG0282 ackA, Acetate kinase Energy production and conversion 154687555 Common epsN EpsN RBAM_031540 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 154687335 Common yuxL YuxL RBAM_029340 190 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 154686242 Common - hypothetical protein RBAM_018090 8 None None None 154685035 Common - hypothetical protein RBAM_005730 89 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 154686190 Common - hypothetical protein RBAM_017570 1 None None None 154687356 Nonpathogen - hypothetical protein RBAM_029550 1 None None None 154687543 Common - putative transcriptional regulator, RpiR family RBAM_031420 122 COG1737 RpiR, Transcriptional regulators Transcription 154685016 Common yvdO YvdO RBAM_005540 18 COG3621 COG3621, Patatin General function prediction only 154686706 Common spoIIIAB SpoIIIAB RBAM_022750 14 None None None 154686027 Common smf Smf RBAM_015940 211 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 154684543 Common csfB CsfB RBAM_000330 3 None None None 154685917 Common ylbE YlbE RBAM_014840 3 None None None 154688207 Common trmE TrmE RBAM_038120 237 COG0486 ThdF, Predicted GTPase General function prediction only 154686889 Common yrrC YrrC RBAM_024590 143 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 154685861 Common ykzG YkzG RBAM_014280 10 COG5503 COG5503, Uncharacterized conserved small protein Function unknown 154685264 Common yfkK YfkK RBAM_008100 5 COG4840 COG4840, Uncharacterized protein conserved in bacteria Function unknown 154686092 Common asd Asd RBAM_016590 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 154687481 Common ytmN YtmN RBAM_030800 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 154687822 Common rpmE RpmE RBAM_034230 172 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 154688088 Common aldX AldX RBAM_036890 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154685320 Common yfhK YfhK RBAM_008660 2 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 154686257 Common bioI BioI RBAM_018240 86 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 154685039 Common - putative transcriptional regulator (GntR family) RBAM_005770 177 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 154687383 Common yusB YusB RBAM_029820 103 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 154686509 Common tyrA TyrA RBAM_020770 154 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 154688188 Common yyaH YyaH RBAM_037930 19 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154687172 Common nrsD NrsD RBAM_027440 232 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687628 Common yvlA YvlA RBAM_032280 5 None None None 154685883 Common yktA YktA RBAM_014500 11 COG4476 COG4476, Uncharacterized protein conserved in bacteria Function unknown 154685441 Common hemZ HemZ RBAM_010070 211 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 154684835 Common srfAB SrfAB RBAM_003660 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686959 Common tig Tig RBAM_025290 214 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 154686033 Common codY CodY RBAM_016000 20 COG4465 CodY, Pleiotropic transcriptional repressor Transcription 154686920 Common nadA NadA RBAM_024900 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 154688186 Common yyaK YyaK RBAM_037910 14 COG1266 COG1266, Predicted metal-dependent membrane protease General function prediction only 154686128 Common baeG BaeG RBAM_016950 50 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 154685394 Common yhdA YhdA RBAM_009600 54 COG0431 COG0431, Predicted flavoprotein General function prediction only 154688045 Common pdp Pdp RBAM_036460 118 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 154686593 Common xerD XerD RBAM_021620 230 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 154688140 Common purA PurA RBAM_037450 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 154685082 Common yvdR YvdR RBAM_006200 127 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 154686983 Common uvrC UvrC RBAM_025550 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 154687248 Common yugJ YugJ RBAM_028470 169 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 154685344 Common katA KatA RBAM_009090 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 154685685 Common - hypothetical 6.8Kb protein (xre 5' region) RBAM_012520 1 None None None 154685466 Common yhfA YhfA RBAM_010320 15 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 154687392 Common yusK YusK RBAM_029910 185 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 154684892 Common mtlA MtlA RBAM_004230 41 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 154685029 Nonpathogen ydeH YdeH RBAM_005670 1 None None None 154685401 Common phoA PhoA RBAM_009670 85 COG1785 PhoA, Alkaline phosphatase Inorganic ion transport and metabolism 154685301 Common yfiQ YfiQ RBAM_008470 4 COG3936 COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation Carbohydrate transport and metabolism 154684704 Nonpathogen - hypothetical protein RBAM_002350 1 None None None 154684744 Common gltP GltP RBAM_002750 157 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 154687343 Common yutD YutD RBAM_029420 11 COG4470 COG4470, Uncharacterized protein conserved in bacteria Function unknown 154687055 Common ytsJ YtsJ RBAM_026270 202 COG0281 SfcA, Malic enzyme Energy production and conversion 154687212 Common yuaJ YuaJ RBAM_028100 14 COG3859 COG3859, Predicted membrane protein Function unknown 154684610 Common gltX GltX RBAM_001170 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 154687401 Common yusR YusR RBAM_030000 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154685295 Common yfiC YfiC RBAM_008410 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 154687924 Common - putative transcriptional regulator RBAM_035250 102 COG1695 COG1695, Predicted transcriptional regulators Transcription 154687843 Common arfM ArfM RBAM_034440 1 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 154684777 Common rapJ RapJ RBAM_003080 2 None None None 154687362 Common yurJ YurJ RBAM_029610 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 154687923 Nonpathogen ywdD YwdD RBAM_035240 1 None None None 154686934 Common minD MinD RBAM_025040 164 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 154685516 Common yirY YirY RBAM_010820 116 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 154687845 Common fnr Fnr RBAM_034460 148 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 154686113 Common ymdA YmdA RBAM_016800 78 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 154686473 Common yppF YppF RBAM_020410 2 None None None 154687678 Common lytB LytB RBAM_032780 51 COG2385 SpoIID, Sporulation protein and related proteins Cell division and chromosome partitioning 154686290 Common yofA YofA RBAM_018580 193 COG0583 LysR, Transcriptional regulator Transcription 154685717 Common ykfC YkfC RBAM_012840 158 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 154684808 Common - hypothetical protein RBAM_003390 25 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 154686236 Common yndH YndH RBAM_018030 5 None None None 154685631 Nonpathogen - hypothetical protein RBAM_011980 1 None None None 154686383 Common yokU YokU RBAM_019510 1 None None None 154686972 Common rph Rph RBAM_025440 216 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 154685952 Common ylmC YlmC RBAM_015190 15 COG1873 COG1873, Uncharacterized conserved protein Function unknown 154686918 Common coxA CoxA RBAM_024880 1 None None None 154687475 Common - hypothetical protein RBAM_030740 99 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685424 Common dat Dat RBAM_009900 191 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 154685752 Common ykoV YkoV RBAM_013190 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 154685842 Common yknX YknX RBAM_014090 141 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 154685897 Common ylaH YlaH RBAM_014640 3 None None None 154687724 Common ywrF YwrF RBAM_033240 75 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 154687082 Common ezrA EzrA RBAM_026540 22 COG4477 EzrA, Negative regulator of septation ring formation Cell division and chromosome partitioning 154687157 Common ywaF YwaF RBAM_027290 11 COG5522 COG5522, Predicted integral membrane protein Function unknown 154687655 Common flgL FlgL RBAM_032550 107 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 154687282 Common yuzC YuzC RBAM_028810 2 None None None 154687197 Common ytjA YtjA RBAM_027690 188 COG0759 COG0759, Uncharacterized conserved protein Function unknown 154686717 Common yqhL YqhL RBAM_022860 120 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 154686058 Common ylxH YlxH RBAM_016250 234 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 154686804 Common yqeU YqeU RBAM_023740 181 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 154687791 Common murAA MurAA RBAM_033920 208 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 154687304 Common dhbE DhbE RBAM_029030 222 COG1021 EntE, Peptide arylation enzymes Secondary metabolites biosynthesis, transport, and catabolism 154684734 Common ybfG YbfG RBAM_002650 10 COG3409 COG3409, Putative peptidoglycan-binding domain-containing protein Cell envelope biogenesis, outer membrane 154687179 Common - glycerophosphoryl diester phosphodiesterase RBAM_027510 151 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 154686205 Common ynzD YnzD RBAM_017720 1 None None None 154687241 Common yugO YugO RBAM_028400 120 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 154687892 Common bacA BacA RBAM_034930 6 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 154684923 Common ydaO YdaO RBAM_004540 44 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154685214 Common yfmT YfmT RBAM_007590 225 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154686888 Common yrrD YrrD RBAM_024580 2 COG3881 COG3881, Uncharacterized protein conserved in bacteria Function unknown 154684690 Common ybbE YbbE RBAM_002160 138 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 154685746 Common tnrA TnrA RBAM_013130 30 COG0789 SoxR, Predicted transcriptional regulators Transcription 154685657 Common yjfB YjfB RBAM_012240 1 None None None 154685488 Common yhfT YhfT RBAM_010540 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154685531 Common yisQ YisQ RBAM_010970 171 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 154686726 Common sipW SipW RBAM_022950 22 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 154688175 Common yyaT YyaT RBAM_037800 88 COG2153 ElaA, Predicted acyltransferase General function prediction only 154688131 Common - putative signal transduction histidine kinase RBAM_037320 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154686486 Common ypmA YpmA RBAM_020540 2 None None None 154684739 Common pssA PssA RBAM_002700 149 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 154685024 Common yrkC YrkC RBAM_005620 18 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 154687219 Common yuaC YuaC RBAM_028170 15 COG1510 COG1510, Predicted transcriptional regulators Transcription 154685311 Nonpathogen yfhE YfhE RBAM_008570 1 None None None 154686547 Common ypbD YpbD RBAM_021160 20 None None None 154688168 Common yybF YybF RBAM_037730 160 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154688056 Common - putative transposase RBAM_036570 6 None None None 154687452 Common yvgM YvgM RBAM_030510 217 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 154687889 Common bacD BacD RBAM_034900 51 COG0439 AccC, Biotin carboxylase Lipid metabolism 154684642 Common rpmC RpmC RBAM_001490 186 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 154686280 Common dacC DacC RBAM_018470 108 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 154687918 Common ywdJ YwdJ RBAM_035190 51 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 154687189 Common ytlA YtlA RBAM_027610 76 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 154687484 Common ytmK YtmK RBAM_030830 137 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 154685807 Common - hypothetical protein RBAM_013740 1 None None None 154686895 Common yrvM YrvM RBAM_024650 222 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 154686314 Common yobK YobK RBAM_018820 3 None None None 154685628 Common yjcJ YjcJ RBAM_011940 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 154685008 Common yrkH YrkH RBAM_005460 175 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154685645 Common ganA GanA RBAM_012120 20 COG3867 COG3867, Arabinogalactan endo-1,4-beta-galactosidase Carbohydrate transport and metabolism 154687982 Common - putative ferrichrome ABC transporter (permease) RBAM_035830 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 154687886 Common ywfH YwfH RBAM_034870 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686202 Common tkt Tkt RBAM_017690 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 154686784 Common yqfL YqfL RBAM_023540 112 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 154685064 Common - hypothetical protein RBAM_006020 41 None None None 154687461 Common yvgQ YvgQ RBAM_030600 152 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 154686504 Common qcrA QcrA RBAM_020720 32 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 154687787 Common fdhD FdhD RBAM_033880 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 154688139 Common yycF YycF RBAM_037400 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 154684670 Common yizA YizA RBAM_001770 3 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 154687023 Common ysbA YsbA RBAM_025950 3 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 154687599 Common yvcJ YvcJ RBAM_031990 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 154686469 Common yprA YprA RBAM_020370 219 COG1205 COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster General function prediction only 154687573 Common paiA PaiA RBAM_031720 53 COG0456 RimI, Acetyltransferases General function prediction only 154687682 Common gtaB GtaB RBAM_032820 233 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 154687193 Common ytkC YtkC RBAM_027650 11 COG4824 COG4824, Phage-related holin (Lysis protein) General function prediction only 154685988 Common defA DefA RBAM_015550 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 154687348 Common yunE YunE RBAM_029470 76 COG0730 COG0730, Predicted permeases General function prediction only 154687706 Common gerKB1 GerKB1 RBAM_033060 14 None None None 154685636 Nonpathogen - hypothetical protein RBAM_012030 1 None None None 154685474 Common fabHB FabHB RBAM_010400 222 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 154686199 Common yneA YneA RBAM_017660 3 None None None 154685177 Common yeeF1 YeeF1 RBAM_007220 7 COG5444 COG5444, Uncharacterized conserved protein Function unknown 154685787 Common ykvO YkvO RBAM_013540 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686169 Common xylB XylB RBAM_017360 185 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 154686422 Common ypmQ YpmQ RBAM_019900 86 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 154688011 Common yxjG YxjG RBAM_036120 83 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 154686625 Common dfnM DfnM RBAM_021940 167 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 154684714 Common yxaD YxaD RBAM_002450 31 COG1846 MarR, Transcriptional regulators Transcription 154686162 Nonpathogen - hypothetical protein RBAM_017290 1 None None None 154686673 Common mmgD MmgD RBAM_022420 194 COG0372 GltA, Citrate synthase Energy production and conversion 154685368 Common yhcG YhcG RBAM_009340 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154687863 Nonpathogen - hypothetical protein RBAM_034640 1 None None None 154686623 Common yqjP YqjP RBAM_021920 106 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 154685663 Common yjiC YjiC RBAM_012300 46 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 154684947 Common dctS DctS RBAM_004780 212 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 154686223 Common parE ParE RBAM_017900 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 154685959 Common ileS IleS RBAM_015260 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154686633 Common dfnE DfnE RBAM_022020 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687997 Common cydD CydD RBAM_035980 249 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 154687379 Common yurX YurX RBAM_029780 182 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 154687939 Common qoxD QoxD RBAM_035400 39 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 154685563 Common yjaV YjaV RBAM_011290 1 None None None 154685205 Common - hypothetical protein RBAM_007500 9 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 154685481 Common yhfL YhfL RBAM_010470 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154685539 Common - hypothetical protein RBAM_011050 105 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 154686340 Common sodF SodF RBAM_019080 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 154684554 Common yazA YazA RBAM_000440 81 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 154688037 Common - hypothetical protein RBAM_036380 160 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 154687327 Common dltE DltE RBAM_029260 237 COG3967 DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cell envelope biogenesis, outer membrane 154687516 Common yvbK YvbK RBAM_031150 24 COG0456 RimI, Acetyltransferases General function prediction only 154684600 Common lysS LysS RBAM_000920 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 154686758 Common yqgH YqgH RBAM_023280 230 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 154687076 Common ytcJ YtcJ RBAM_026480 113 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 154687631 Common uvrB UvrB RBAM_032310 232 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 154687370 Nonpathogen ybgB YbgB RBAM_029690 1 COG5658 COG5658, Predicted integral membrane protein Function unknown 154685115 Common ydjH YdjH RBAM_006600 5 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 154685379 Common yhcR YhcR RBAM_009450 128 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 154685391 Common yhxB YhxB RBAM_009570 240 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 154685573 Common appB AppB RBAM_011390 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 154685776 Common ykvE YkvE RBAM_013430 116 COG1846 MarR, Transcriptional regulators Transcription 154687204 Common menC MenC RBAM_027760 155 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 154686462 Common - hypothetical protein RBAM_020300 1 None None None 154688115 Nonpathogen - hypothetical protein RBAM_037160 1 None None None 154685452 Common yhaL YhaL RBAM_010180 2 None None None 154687582 Common - hypothetical protein RBAM_031820 54 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 154686106 Common ymfJ YmfJ RBAM_016730 7 None None None 154686906 Common secDF SecDF RBAM_024760 221 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 154685737 Common metE MetE RBAM_013040 142 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 154685571 Common appF AppF RBAM_011370 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 154687778 Common xynA XynA RBAM_033790 8 None None None 154685910 Common ctaE CtaE RBAM_014770 156 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 154686967 Common ilvB IlvB RBAM_025370 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 154687617 Common hprP HprP RBAM_032170 196 COG0546 Gph, Predicted phosphatases General function prediction only 154685710 Common dppA DppA RBAM_012770 35 COG2362 DppA, D-aminopeptidase Amino acid transport and metabolism 154687110 Common acuB AcuB RBAM_026820 104 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 154687915 Common spsA SpsA RBAM_035160 150 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 154686687 Common spoIVB SpoIVB RBAM_022560 17 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 154687090 Nonpathogen - phage-related, Zn finger domain containing protein RBAM_026620 2 None None None 154688005 Common yxkD YxkD RBAM_036060 47 COG1284 COG1284, Uncharacterized conserved protein Function unknown 154685381 Common yhcT YhcT RBAM_009470 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 154687660 Common comFC ComFC RBAM_032600 148 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 154685735 Common - hypothetical protein RBAM_013020 51 None None None 154685942 Common murB MurB RBAM_015090 206 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 154687653 Common yviF YviF RBAM_032530 39 COG1699 COG1699, Uncharacterized protein conserved in bacteria Function unknown 154685314 Common yfhH YfhH RBAM_008600 4 None None None 154685719 Common ykgB YkgB RBAM_012860 56 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 154687239 Common yugS YugS RBAM_028380 222 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 154687814 Nonpathogen ywkF YwkF RBAM_034150 1 None None None 154684930 Nonpathogen - hypothetical protein RBAM_004610 1 None None None 154687558 Common epsK EpsK RBAM_031570 18 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 154685856 Common kinC KinC RBAM_014230 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154687723 Nonpathogen cotG CotG RBAM_033230 1 None None None 154684871 Nonpathogen phrC PhrC RBAM_004020 1 None None None 154686224 Common parC ParC RBAM_017910 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 154687834 Common uvsE UvsE RBAM_034350 24 COG4294 Uve, UV damage repair endonuclease DNA replication, recombination, and repair 154684705 Nonpathogen - hypothetical protein RBAM_002360 1 None None None 154685191 Common yetL YetL RBAM_007360 101 COG1846 MarR, Transcriptional regulators Transcription 154686796 Common yqfC YqfC RBAM_023660 15 None None None 154687057 Common - hypothetical protein RBAM_026290 8 None None None 154684810 Common aroK AroK RBAM_003410 198 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 154688068 Common fbaB FbaB RBAM_036690 179 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 154684957 Common ydbO2 YdbO2 RBAM_004880 121 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 154686067 Common tsf Tsf RBAM_016340 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 154686802 Common yqeW YqeW RBAM_023720 89 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 154687037 Common ytbE YtbE RBAM_026090 184 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 154684667 Common rplM RplM RBAM_001740 231 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 154685850 Common ykpA YkpA RBAM_014170 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 154687435 Common yvrG1 YvrG1 RBAM_030340 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154684817 Common ycgT YcgT RBAM_003480 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 154686565 Common ypuI YpuI RBAM_021340 1 None None None 154687316 Common yumB YumB RBAM_029150 203 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 154685587 Common yjbF YjbF RBAM_011530 12 COG4469 CoiA, Competence protein General function prediction only 154685705 Common ykcA YkcA RBAM_012720 39 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 154687734 Common - hypothetical protein RBAM_033340 9 COG5620 COG5620, Uncharacterized conserved protein Function unknown 154688100 Common - putative carbon monoxide dehydrogenase small subunit RBAM_037010 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 154688153 Common rplI RplI RBAM_037580 215 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 154688174 Common yybA YybA RBAM_037790 87 COG1846 MarR, Transcriptional regulators Transcription 154685527 Nonpathogen - hypothetical protein RBAM_010930 1 None None None 154684584 Common yabS YabS RBAM_000760 4 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 154685823 Common ykuL YkuL RBAM_013900 9 COG0517 COG0517, FOG: CBS domain General function prediction only 154685155 Common pcrB PcrB RBAM_007000 37 COG1646 COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold General function prediction only 154685235 Common citM CitM RBAM_007810 32 COG2851 CitM, H+/citrate symporter Energy production and conversion 154686634 Common dfnD DfnD RBAM_022030 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686339 Common sqhC SqhC RBAM_019070 42 COG1657 SqhC, Squalene cyclase Lipid metabolism 154685476 Common gltT GltT RBAM_010420 160 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 154688038 Common yxiA YxiA RBAM_036390 24 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 154686185 Common ynaE YnaE RBAM_017520 5 None None None 154687960 Common - putative transcriptional regulator (MerR family RBAM_035610 123 COG0789 SoxR, Predicted transcriptional regulators Transcription 154685962 Common ylyB YlyB RBAM_015290 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 154685491 Common yhfW YhfW RBAM_010570 112 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 154686349 Common yojL YojL RBAM_019170 155 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 154685227 Common yflS YflS RBAM_007730 112 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 154685722 Common ykkB YkkB RBAM_012890 93 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154687087 Common rpsD RpsD RBAM_026590 243 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 154688073 Common iolE IolE RBAM_036740 69 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 154688065 Common mrsF MrsF RBAM_036660 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154685825 Common ykuN YkuN RBAM_013920 85 COG0716 FldA, Flavodoxins Energy production and conversion 154687254 Common yugE YugE RBAM_028530 2 None None None 154684905 Common yczJ YczJ RBAM_004360 31 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 154687476 Common - hypothetical protein RBAM_030750 67 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 154684526 Common yaaC YaaC RBAM_000110 4 None None None 154686715 Common mntR MntR RBAM_022840 103 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 154685094 Common gcp Gcp RBAM_006390 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 154685113 Common pspA PspA RBAM_006580 84 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 154686942 Common comC ComC RBAM_025120 128 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 154684885 Common gabD GabD RBAM_004160 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154686262 Common bioW BioW RBAM_018290 8 COG1424 BioW, Pimeloyl-CoA synthetase Coenzyme metabolism 154687799 Common atpH AtpH RBAM_034000 190 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 154687061 Common ytoI YtoI RBAM_026330 90 COG4109 COG4109, Predicted transcriptional regulator containing CBS domains Transcription 154686264 Common yngB YngB RBAM_018310 233 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 154686057 Common flhF FlhF RBAM_016240 158 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 154686994 Common yshC YshC RBAM_025660 89 COG1796 POL4, DNA polymerase IV (family X) DNA replication, recombination, and repair 154686604 Common yqxK YqxK RBAM_021730 35 COG1379 COG1379, Uncharacterized conserved protein Function unknown 154686602 Common ansA AnsA RBAM_021710 145 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 154686612 Common yqjZ YqjZ RBAM_021810 21 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 154686897 Common hisS HisS RBAM_024670 248 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154686739 Common yqhA YqhA RBAM_023080 32 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154685455 Common yhaK YhaK RBAM_010210 4 None None None 154687173 Common nrsC NrsC RBAM_027450 220 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686215 Common - hypothetical protein RBAM_017820 1 None None None 154685557 Common carA CarA RBAM_011230 235 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 154687984 Common ydeT YdeT RBAM_035850 184 COG0640 ArsR, Predicted transcriptional regulators Transcription 154685728 Common ohrA OhrA RBAM_012950 98 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 154686368 Common bglA BglA RBAM_019360 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 154686147 Common hfq Hfq RBAM_017140 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 154686763 Common yqgE YqgE RBAM_023330 8 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 154684538 Common dnaX DnaX RBAM_000250 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 154686503 Common qcrB QcrB RBAM_020710 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 154685613 Common cotV CotV RBAM_011790 2 None None None 154685331 Common ygaC YgaC RBAM_008770 15 COG3557 COG3557, Uncharacterized domain/protein associated with RNAses G and E Translation, ribosomal structure and biogenesis 154687751 Common glcR GlcR RBAM_033520 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 154685168 Common yefA YefA RBAM_007130 210 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 154687018 Common ysdA YsdA RBAM_025900 25 COG3326 COG3326, Predicted membrane protein Function unknown 154687491 Common rnr Rnr RBAM_030900 206 COG0557 VacB, Exoribonuclease R Transcription 154686142 Common ymaD YmaD RBAM_017090 41 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 154686776 Common yqfQ YqfQ RBAM_023460 2 COG4499 COG4499, Predicted membrane protein Function unknown 154685290 Common glvA GlvA RBAM_008360 53 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 154685884 Common yktB YktB RBAM_014510 9 COG4493 COG4493, Uncharacterized protein conserved in bacteria Function unknown 154687695 Common - hypothetical protein RBAM_032950 192 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 154685871 Common mlnF MlnF RBAM_014380 214 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686136 Common baeS BaeS RBAM_017030 79 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 154687234 Common tgl Tgl RBAM_028330 5 None None None 154686094 Common dapA DapA RBAM_016610 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 154685982 Common yloC YloC RBAM_015490 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 154687769 Common - cell-division protein RBAM_033700 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 154688169 Common yybE YybE RBAM_037740 192 COG0583 LysR, Transcriptional regulator Transcription 154685337 Common ygzB YgzB RBAM_008830 3 None None None 154684793 Common opuAC OpuAC RBAM_003240 58 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 154686975 Common ysmB YsmB RBAM_025470 91 COG1846 MarR, Transcriptional regulators Transcription 154687249 Common yuzA YuzA RBAM_028480 24 COG2155 COG2155, Uncharacterized conserved protein Function unknown 154687404 Common - putative acetoacetate decarboxylase RBAM_030030 18 COG4689 Adc, Acetoacetate decarboxylase Secondary metabolites biosynthesis, transport, and catabolism 154687106 Common - hypothetical protein RBAM_026780 20 COG4392 COG4392, Predicted membrane protein Function unknown 154687111 Common acuC AcuC RBAM_026830 161 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 154684860 Common yxeL YxeL RBAM_003910 9 COG0456 RimI, Acetyltransferases General function prediction only 154686127 Common acpK AcpK RBAM_016940 5 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154687562 Common epsG EpsG RBAM_031610 10 None None None 154685770 Common mtnW MtnW RBAM_013370 64 COG1850 RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit Carbohydrate transport and metabolism 154686324 Nonpathogen yocB YocB RBAM_018920 4 None None None 154685534 Common yisX YisX RBAM_011000 46 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 154687359 Common pucG PucG RBAM_029580 154 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 154686679 Common yqiH YqiH RBAM_022480 1 None None None 154685328 Common fabL FabL RBAM_008740 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154686656 Common yqjA YqjA RBAM_022250 10 COG4129 COG4129, Predicted membrane protein Function unknown 154686745 Common yqgU YqgU RBAM_023150 2 None None None 154684913 Common ydaG YdaG RBAM_004440 18 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 154687572 Common yyaS YyaS RBAM_031710 37 COG2364 COG2364, Predicted membrane protein Function unknown 154686680 Common - hypothetical protein RBAM_022490 15 COG1971 COG1971, Predicted membrane protein Function unknown 154686574 Common ypuD YpuD RBAM_021430 1 None None None 154685496 Common - hypothetical protein RBAM_010620 7 COG5646 COG5646, Uncharacterized conserved protein Function unknown 154686952 Common hemX HemX RBAM_025220 46 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 154684972 Common rsbT RsbT RBAM_005030 40 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 154686864 Common yrhC YrhC RBAM_024340 1 None None None 154686816 Common yqeN YqeN RBAM_023860 70 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 154685779 Common clpE ClpE RBAM_013460 223 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 154686107 Common - hypothetical protein RBAM_016740 5 None None None 154686881 Common alaS AlaS RBAM_024510 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 154685580 Common oppD OppD RBAM_011460 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 154684660 Common rpsK RpsK RBAM_001670 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 154685121 Common ydjM YdjM RBAM_006660 1 None None None 154687275 Common mrpG MrpG RBAM_028740 68 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 154687859 Nonpathogen - hypothetical protein RBAM_034600 1 None None None 154686416 Common ypqP YpqP RBAM_019840 134 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 154685603 Common thiS ThiS RBAM_011690 20 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 154685053 Common yraG YraG RBAM_005910 3 None None None 154687594 Common - ribonuclease precursor (Barnase) RBAM_031940 11 COG4290 COG4290, Guanyl-specific ribonuclease Sa Nucleotide transport and metabolism 154686254 Common scoB ScoB RBAM_018210 92 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 154686030 Common codV CodV RBAM_015970 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 154686076 Common ylxS YlxS RBAM_016430 179 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 154687727 Common ywrD YwrD RBAM_033270 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 154685277 Common yfjQ YfjQ RBAM_008230 176 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 154686980 Common sdhC SdhC RBAM_025520 18 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 154686415 Common yokA YokA RBAM_019830 53 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 154686088 Common mlpA MlpA RBAM_016550 202 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 154687416 Common yuxN YuxN RBAM_030150 89 COG1309 AcrR, Transcriptional regulator Transcription 154686041 Common fliJ FliJ RBAM_016080 6 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 154687614 Common hisZ HisZ RBAM_032140 249 COG3705 HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis Amino acid transport and metabolism 154684849 Common yclB YclB RBAM_003800 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 154685596 Common yjbN YjbN RBAM_011620 220 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 154686847 Common - hypothetical protein RBAM_024170 125 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 154685067 Common bltR BltR RBAM_006050 44 COG0789 SoxR, Predicted transcriptional regulators Transcription 154687030 Common dnaI DnaI RBAM_026020 26 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 154687958 Common ywbG YwbG RBAM_035590 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 154684950 Common ydbI YdbI RBAM_004810 82 COG0628 PerM, Predicted permease General function prediction only 154686448 Nonpathogen - hypothetical protein RBAM_020160 1 None None None 154685859 Common adeC AdeC RBAM_014260 97 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 154684631 Common tufA TufA RBAM_001380 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 154686670 Common yqzF YqzF RBAM_022390 3 None None None 154686911 Common yrbF YrbF RBAM_024810 127 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 154687259 Common yuxJ YuxJ RBAM_028580 221 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154687868 Common - putative amino acid transporter RBAM_034690 186 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 154684834 Common srfAA SrfAA RBAM_003650 223 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154688180 Common - hypothetical protein RBAM_037850 2 None None None 154684746 Common ybgF YbgF RBAM_002770 164 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 154684829 Common nin Nin RBAM_003600 1 None None None 154685805 Common ykwC YkwC RBAM_013720 189 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 154687877 Nonpathogen - hypothetical protein RBAM_034780 1 None None None 154684936 Nonpathogen - hypothetical protein RBAM_004670 1 None None None 154685869 Common mlnD MlnD RBAM_014360 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686394 Nonpathogen cgeA CgeA RBAM_019620 1 None None None 154687513 Common yvbG YvbG RBAM_031120 157 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 154684783 Common yceB YceB RBAM_003140 109 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 154687641 Common ftsE FtsE RBAM_032410 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 154685938 Common mraY MraY RBAM_015050 209 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 154684562 Common yabG YabG RBAM_000520 11 COG1429 CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases Coenzyme metabolism 154685949 Common sigG SigG RBAM_015160 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 154687009 Common araN AraN RBAM_025810 87 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 154684750 Common ycbA YcbA RBAM_002810 163 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 154686475 Nonpathogen yppD YppD RBAM_020430 1 None None None 154685133 Common - hypothetical protein RBAM_006780 3 None None None 154687762 Common ywoH YwoH RBAM_033630 83 COG1846 MarR, Transcriptional regulators Transcription 154685895 Common ylaF YlaF RBAM_014620 1 None None None 154687951 Common ywbO YwbO RBAM_035520 86 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 154687320 Nonpathogen - hypothetical protein RBAM_029190 1 None None None 154685286 Common acoC AcoC RBAM_008320 196 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 154685161 Common opuE OpuE RBAM_007060 187 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 154687442 Common fhuC FhuC RBAM_030410 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 154686060 Common cheA CheA RBAM_016270 162 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 154684639 Common rplV RplV RBAM_001460 229 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 154685927 Common rpmF RpmF RBAM_014940 85 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 154684804 Common ycgI YcgI RBAM_003350 57 COG3665 COG3665, Uncharacterized conserved protein Function unknown 154687458 Common yvgN YvgN RBAM_030570 192 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 154687907 Common spsJ SpsJ RBAM_035080 234 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 154684893 Common - PTS mannitol-specific enzyme IIA component RBAM_004240 68 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 154686352 Common yojI YojI RBAM_019200 166 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 154686175 Common - hypothetical protein RBAM_017420 1 None None None 154687741 Common ywqI YwqI RBAM_033420 1 None None None 154684571 Common ctc Ctc RBAM_000610 176 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 154687742 Common ywqH YwqH RBAM_033430 1 None None None 154686450 Common ypbR YpbR RBAM_020180 39 COG1159 Era, GTPase General function prediction only 154684757 Common ydfO YdfO RBAM_002880 39 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154687699 Common yttA YttA RBAM_032990 4 COG2433 COG2433, Uncharacterized conserved protein Function unknown 154684806 Nonpathogen lci Lci RBAM_003370 1 None None None 154685196 Common - hypothetical protein RBAM_007410 33 COG1846 MarR, Transcriptional regulators Transcription 154686837 Common yrkR YrkR RBAM_024070 20 COG3223 COG3223, Predicted membrane protein Function unknown 154685198 Common - putative ABC transporter permease RBAM_007430 134 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 154685562 Common yjaU YjaU RBAM_011280 2 COG2267 PldB, Lysophospholipase Lipid metabolism 154687135 Common ytkP YtkP RBAM_027070 228 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 154687184 Common asnB AsnB RBAM_027560 171 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 154685916 Common ylbD YlbD RBAM_014830 3 None None None 154685501 Common yhjB YhjB RBAM_010670 143 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 154687528 Common pgm2 Pgm2 RBAM_031270 126 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 154687159 Common bceA BceA RBAM_027310 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 154687080 Common nifZ NifZ RBAM_026520 237 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 154684998 Common - hypothetical protein RBAM_005360 186 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 154687227 Common yubA YubA RBAM_028260 183 COG0628 PerM, Predicted permease General function prediction only 154685274 Common pdaA PdaA RBAM_008200 117 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154685658 Common yjgA YjgA RBAM_012250 11 None None None 154687467 Common bdbD BdbD RBAM_030660 41 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 154686082 Common rbfA RbfA RBAM_016490 162 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 154685079 Common ydhQ YdhQ RBAM_006170 121 COG2188 PhnF, Transcriptional regulators Transcription 154687393 Common yusL YusL RBAM_029920 163 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 154687544 Common gntK GntK RBAM_031430 185 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 154686783 Common yqxD YqxD RBAM_023530 98 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 154686659 Common yqiX YqiX RBAM_022280 187 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 154686877 Common yrrL YrrL RBAM_024470 186 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 154687447 Common sspJ SspJ RBAM_030460 1 None None None 154687996 Common yxkO YxkO RBAM_035970 220 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 154685402 Common lytE LytE RBAM_009680 134 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 154685435 Common yheC YheC RBAM_010010 6 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 154684743 Common ybfQ YbfQ RBAM_002740 110 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 154685300 Common - hypothetical protein RBAM_008460 76 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 154687919 Common ywdI YwdI RBAM_035200 2 None None None 154686926 Common pheB PheB RBAM_024960 14 COG4492 PheB, ACT domain-containing protein General function prediction only 154687363 Common yurK YurK RBAM_029620 131 COG2188 PhnF, Transcriptional regulators Transcription 154685397 Common lytF LytF RBAM_009630 153 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 154687342 Common yutE YutE RBAM_029410 6 COG2445 COG2445, Uncharacterized conserved protein Function unknown 154688199 Common yyaD YyaD RBAM_038040 20 COG3949 COG3949, Uncharacterized membrane protein Function unknown 154687306 Common dhbA DhbA RBAM_029050 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154684764 Common tatCD TatCD RBAM_002950 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 154685430 Common yheG YheG RBAM_009960 52 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 154685876 Common pdhB PdhB RBAM_014430 183 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 154684974 Common rsbV RsbV RBAM_005050 46 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 154686836 Common - hypothetical protein RBAM_024060 7 COG1695 COG1695, Predicted transcriptional regulators Transcription 154686933 Common spoIVFA SpoIVFA RBAM_025030 7 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 154687842 Common narG NarG RBAM_034430 112 COG5013 NarG, Nitrate reductase alpha subunit Energy production and conversion 154684788 Common yceG YceG RBAM_003190 4 None None None 154687081 Common braB BraB RBAM_026530 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 154684809 Common ycbE YcbE RBAM_003400 199 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 154686919 Common safA SafA RBAM_024890 7 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 154686480 Common ypoC YpoC RBAM_020480 2 None None None 154687716 Common alsD AlsD RBAM_033160 40 COG3527 AlsD, Alpha-acetolactate decarboxylase Secondary metabolites biosynthesis, transport, and catabolism 154687833 Common ywjE YwjE RBAM_034340 150 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 154684997 Common - hypothetical protein RBAM_005350 166 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 154684867 Common yclI YclI RBAM_003980 34 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 154685296 Common yfiD YfiD RBAM_008420 94 COG2259 COG2259, Predicted membrane protein Function unknown 154686530 Common yphE YphE RBAM_020980 2 None None None 154688143 Common yycD YycD RBAM_037480 2 None None None 154685423 Common yheN YheN RBAM_009890 92 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 154685407 Common yhdH YhdH RBAM_009730 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 154685045 Common ydeR YdeR RBAM_005830 66 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685569 Common yjaZ YjaZ RBAM_011350 4 COG5504 COG5504, Predicted Zn-dependent protease Posttranslational modification, protein turnover, chaperones 154687570 Common pnbA PnbA RBAM_031690 79 COG2272 PnbA, Carboxylesterase type B Lipid metabolism 154685549 Common yitW YitW RBAM_011150 152 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 154686476 Nonpathogen sspM SspM RBAM_020440 1 None None None 154687509 Common opuCC OpuCC RBAM_031080 90 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 154688194 Common ssb Ssb RBAM_037990 214 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 154685716 Common ykfB YkfB RBAM_012830 157 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 154686538 Common ypeB YpeB RBAM_021070 14 None None None 154687922 Nonpathogen ywdE YwdE RBAM_035230 1 None None None 154686585 Common spoVAB SpoVAB RBAM_021540 4 None None None 154685036 Common adhA AdhA RBAM_005740 192 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 154687158 Common bceB BceB RBAM_027300 17 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 154688080 Common csbC CsbC RBAM_036810 164 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685970 Common pyrD PyrD RBAM_015370 238 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 154686541 Common ypdA YpdA RBAM_021100 153 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 154685947 Common spoIIGA SpoIIGA RBAM_015140 14 None None None 154686718 Common gcvPB GcvPB RBAM_022870 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 154685321 Common yfhL YfhL RBAM_008670 2 COG5658 COG5658, Predicted integral membrane protein Function unknown 154685148 Common purN PurN RBAM_006930 226 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 154685243 Common yflG YflG RBAM_007890 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 154687963 Common ywbC YwbC RBAM_035640 81 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 154685138 Common yebG YebG RBAM_006830 3 None None None 154684989 Common - putative transcriptional regulato RBAM_005270 75 COG1846 MarR, Transcriptional regulators Transcription 154685143 Common purS PurS RBAM_006880 115 COG1828 PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Nucleotide transport and metabolism 154685179 Common cotJA CotJA RBAM_007240 2 None None None 154685644 Common - putative transcription regulator, MarR family RBAM_012110 24 COG1846 MarR, Transcriptional regulators Transcription 154687336 Common thrB ThrB RBAM_029350 121 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 154686705 Common spoIIIAC SpoIIIAC RBAM_022740 14 None None None 154686189 Nonpathogen - hypothetical protein RBAM_017560 1 None None None 154685265 Common yfkJ YfkJ RBAM_008110 140 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 154687592 Common yvdA YvdA RBAM_031920 41 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 154686968 Nonpathogen - hypothetical protein RBAM_025380 1 None None None 154686315 Common yobL YobL RBAM_018830 6 COG5444 COG5444, Uncharacterized conserved protein Function unknown 154684985 Common - hypothetical protein RBAM_005230 84 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154686423 Common ypmP YpmP RBAM_019910 2 None None None 154687821 Common tdk Tdk RBAM_034220 97 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 154686210 Common cotM CotM RBAM_017770 1 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 154686441 Common ypzA YpzA RBAM_020090 2 None None None 154685977 Common ylnD YlnD RBAM_015440 204 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 154686279 Common fenA FenA RBAM_018460 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154687974 Common ywaA YwaA RBAM_035750 212 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 154684561 Common ksgA KsgA RBAM_000510 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 154685040 Common - putative transcriptional repressor of sporulation and degradative enzymes production RBAM_005780 60 COG2808 PaiB, Transcriptional regulator Transcription 154687021 Common infC InfC RBAM_025930 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 154685957 Common ylmH YlmH RBAM_015240 32 COG2302 COG2302, Uncharacterized conserved protein, contains S4-like domain Function unknown 154684678 Common gabT1 GabT1 RBAM_002040 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 154686537 Common ypfB YpfB RBAM_021050 2 None None None 154686026 Common sucD SucD RBAM_015930 214 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 154687627 Common yvlB YvlB RBAM_032270 10 COG3595 COG3595, Uncharacterized conserved protein Function unknown 154685081 Common yycB YycB RBAM_006190 98 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 154687382 Common yusA YusA RBAM_029810 101 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 154685637 Nonpathogen - hypothetical protein RBAM_012040 1 None None None 154687640 Common ftsX FtsX RBAM_032400 118 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 154684593 Common pabB PabB RBAM_000850 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 154684641 Common rplP RplP RBAM_001480 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 154685860 Common ykqC YkqC RBAM_014270 159 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 154686850 Common manP ManP RBAM_024200 133 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 154688206 Common gidA GidA RBAM_038110 194 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 154685920 Common ylbH YlbH RBAM_014870 212 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 154684948 Common dctR DctR RBAM_004790 224 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 154685338 Common ygxA YgxA RBAM_008840 3 None None None 154685987 Common priA PriA RBAM_015540 215 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 154685593 Common yjbK YjbK RBAM_011590 9 COG4116 COG4116, Uncharacterized protein conserved in bacteria Function unknown 154685811 Common patA PatA RBAM_013780 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 154688114 Common yydA YydA RBAM_037150 166 COG1576 COG1576, Uncharacterized conserved protein Function unknown 154685176 Common - hypothetical protein RBAM_007210 2 None None None 154686825 Common yqeI YqeI RBAM_023950 98 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 154685061 Common - putative glycerol dehydrogenase RBAM_005990 60 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 154687681 Common mnaA MnaA RBAM_032810 156 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 154684725 Common yqeB YqeB RBAM_002560 1 None None None 154686002 Common sdaAA SdaAA RBAM_015690 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 154687633 Common yvkC YvkC RBAM_032330 190 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 154687770 Common ywoA YwoA RBAM_033710 68 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 154686632 Common dfnF DfnF RBAM_022010 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 154686759 Common pstS PstS RBAM_023290 166 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 154687540 Common - hypothetical protein RBAM_031390 129 COG1609 PurR, Transcriptional regulators Transcription 154687938 Common ywcE YwcE RBAM_035390 1 None None None 154684553 Common yabB YabB RBAM_000430 101 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 154687856 Common - hypothetical protein RBAM_034570 1 None None None 154686341 Common yocR YocR RBAM_019090 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 154685482 Common yhfM YhfM RBAM_010480 1 None None None 154684653 Common rplO RplO RBAM_001600 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 154688205 Common gidB GidB RBAM_038100 189 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 154687600 Common yvcI YvcI RBAM_032000 36 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 154685454 Common - hypothetical protein RBAM_010200 2 None None None 154687949 Common - hypothetical protein RBAM_035500 96 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 154685378 Common yhcQ YhcQ RBAM_009440 6 COG5577 COG5577, Spore coat protein Cell envelope biogenesis, outer membrane 154688040 Common hutH HutH RBAM_036410 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 154687999 Common cydB CydB RBAM_036000 156 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 154687632 Common csbA CsbA RBAM_032320 4 COG4897 CsbA, Uncharacterized protein conserved in bacteria Function unknown 154685114 Common ydjG YdjG RBAM_006590 20 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 154688210 Common rnpA RnpA RBAM_038150 107 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 154684792 Common opuAB OpuAB RBAM_003230 156 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 154685140 Common purK PurK RBAM_006850 194 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 154687211 Common ytaB YtaB RBAM_027830 36 COG3476 COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) Signal transduction mechanisms 154685574 Common appC AppC RBAM_011400 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 154688094 Common - hypothetical protein RBAM_036950 7 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 154684878 Common ycnB YcnB RBAM_004090 206 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154685072 Common ydhC YdhC RBAM_006100 143 COG1802 GntR, Transcriptional regulators Transcription 154685830 Common ykuS YkuS RBAM_013970 10 None None None 154687777 Common ywnC YwnC RBAM_033780 1 None None None 154686391 Common cgeE CgeE RBAM_019590 1 COG0456 RimI, Acetyltransferases General function prediction only 154684720 Common yfiM YfiM RBAM_002510 57 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 154686960 Common ysoA YsoA RBAM_025300 7 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 154685784 Common ykvL YkvL RBAM_013510 104 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 154687525 Common - hypothetical protein RBAM_031240 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 154687371 Common yurQ YurQ RBAM_029700 7 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 154686949 Common hemB HemB RBAM_025190 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 154688014 Common - hypothetical protein RBAM_036150 22 None None None 154685489 Common yhfU YhfU RBAM_010550 36 COG1268 BioY, Uncharacterized conserved protein General function prediction only 154686662 Common bkdB BkdB RBAM_022310 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 154686198 Common lexA LexA RBAM_017650 173 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 154688123 Common rocE RocE RBAM_037240 169 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 154686819 Common comEA ComEA RBAM_023890 126 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 154687326 Common yjcK YjcK RBAM_029250 142 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 154684775 Common ycdC YcdC RBAM_003060 2 None None None 154686174 Nonpathogen - hypothetical protein RBAM_017410 1 None None None 154687198 Common ytiB YtiB RBAM_027700 41 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 154688128 Common - hypothetical protein RBAM_037290 50 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154687075 Common ytdI YtdI RBAM_026470 184 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 154685572 Common appA AppA RBAM_011380 208 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 154687203 Nonpathogen - hypothetical protein RBAM_027750 1 None None None 154687266 Common yufO YufO RBAM_028650 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 154685759 Common ykrL YkrL RBAM_013260 187 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 154686725 Common tasA TasA RBAM_022940 2 None None None 154687656 Common flgK FlgK RBAM_032560 124 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 154686116 Common tdh Tdh RBAM_016830 207 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 154686248 Common xynD XynD RBAM_018150 21 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 154686880 Common yrzL YrzL RBAM_024500 24 COG4472 COG4472, Uncharacterized protein conserved in bacteria Function unknown 154686704 Common spoIIIAD SpoIIIAD RBAM_022730 15 None None None 154684924 Common mutT MutT RBAM_004550 111 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 154686696 Common nusB NusB RBAM_022650 204 COG0781 NusB, Transcription termination factor Transcription 154687936 Common rodA RodA RBAM_035370 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 154687242 Common yugN YugN RBAM_028410 3 None None None 154685365 Nonpathogen yhcC YhcC RBAM_009310 1 None None None 154686203 Common yneE YneE RBAM_017700 1 None None None 154686805 Common yqeT YqeT RBAM_023750 191 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 154687218 Common gbsA GbsA RBAM_028160 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 154687985 Common ydfA YdfA RBAM_035860 123 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 154687844 Common ywiC YwiC RBAM_034450 11 None None None 154688130 Common - hypothetical protein RBAM_037310 110 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 154687705 Common gerKA1 GerKA1 RBAM_033050 15 None None None 154687881 Common ywfL YwfL RBAM_034820 19 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 154686738 Common yqhB YqhB RBAM_023070 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 154684955 Common ydbN YdbN RBAM_004860 1 None None None 154685528 Common yisN YisN RBAM_010940 1 None None None 154684719 Common yfiL YfiL RBAM_002500 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 154685662 Common yjiB YjiB RBAM_012290 78 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 154688109 Nonpathogen - hypothetical protein RBAM_037100 1 None None None 154686024 Common ylqH YlqH RBAM_015910 111 COG2257 COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Function unknown 154686040 Common fliI FliI RBAM_016070 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 154686177 Common - putative NADP-dependent alcohol dehydrogenase RBAM_017440 209 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 154686562 Common spmB SpmB RBAM_021310 39 COG0700 SpmB, Uncharacterized membrane protein Function unknown 154687453 Common - two-component response regulator RBAM_030520 217 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 154687609 Common hisA HisA RBAM_032090 215 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 154686546 Common ypbE YpbE RBAM_021150 5 None None None 154686373 Common yodJ YodJ RBAM_019410 45 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 154685851 Common ykpB YkpB RBAM_014180 103 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 154686635 Common dfnC DfnC RBAM_022040 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 154685310 Common yfhD YfhD RBAM_008560 2 None None None 154687181 Common ytpA YtpA RBAM_027530 111 COG2267 PldB, Lysophospholipase Lipid metabolism 154685997 Common spoVM SpoVM RBAM_015640 1 None None None 154687460 Common yvgP YvgP RBAM_030590 103 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 154688152 Common - hypothetical protein RBAM_037570 7 COG2112 COG2112, Predicted Ser/Thr protein kinase Signal transduction mechanisms 154686603 Common ansR AnsR RBAM_021720 17 COG1396 HipB, Predicted transcriptional regulators Transcription 154688138 Common yycG YycG RBAM_037390 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 154687485 Common ytmJ YtmJ RBAM_030840 142 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 154686009 Common rnc Rnc RBAM_015760 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 154687626 Common yvlC YvlC RBAM_032260 29 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 154687134 Common ytlP YtlP RBAM_027060 46 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 154687888 Common bacE BacE RBAM_034890 27 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 154686644 Common yqjL YqjL RBAM_022130 27 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 154687707 Common gerKC1 GerKC1 RBAM_033070 14 None None None 154685477 Common yhfH YhfH RBAM_010430 2 None None None 154684671 Common ybaK YbaK RBAM_001780 2 None None None 154687305 Common dhbC DhbC RBAM_029040 222 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 154686733 Common comGD ComGD RBAM_023020 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion