Yersinia pseudotuberculosis IP 31758, complete genome NC_009708 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 153949371 Common - transporter, Ni2+-Co2+ transporter (NiCoT) family YpsIP31758_1164 42 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 153948495 Common - sirB family protein YpsIP31758_2064 38 COG3094 COG3094, Uncharacterized protein conserved in bacteria Function unknown 153949275 Common fliZ protein FliZ YpsIP31758_2278 9 None None None 153949162 Common - Luciferase-like monooxygenase family protein YpsIP31758_3587 109 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 153950305 Common - citrate transporter family protein YpsIP31758_1447 160 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 153950283 Common wecF 4-alpha-L-fucosyltransferase YpsIP31758_0191 18 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 153948412 Common - hypothetical protein YpsIP31758_0235 15 COG4517 COG4517, Uncharacterized protein conserved in bacteria Function unknown 153947755 Common - tail protein YpsIP31758_2190 7 None None None 153947403 Common rob right origin-binding protein YpsIP31758_3481 122 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153949293 Common tam trans-aconitate 2-methyltransferase YpsIP31758_1498 69 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 153948417 Common motB2 flagellar motor protein B YpsIP31758_0662 103 COG1360 MotB, Flagellar motor protein Cell motility and secretion 153947906 Pathogen - hypothetical protein YpsIP31758_0978 1 None None None 153948441 Common - ABC transporter, permease protein YpsIP31758_2660 105 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 153950554 Common - prevent-host-death family protein YpsIP31758_2237 13 None None None 153946960 Common - hypothetical protein YpsIP31758_1385 9 None None None 153949875 Common lpxA acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase YpsIP31758_1025 144 COG1043 LpxA, Acyl- acyl carrier protein 153948356 Common - hypothetical protein YpsIP31758_0372 7 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 153948186 Common yut urea transporter YpsIP31758_1084 19 COG4413 Utp, Urea transporter Amino acid transport and metabolism 153949118 Common - hypothetical protein YpsIP31758_0768 7 None None None 153949750 Common potD spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein YpsIP31758_1219 56 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 153947587 Common cysD sulfate adenylyltransferase, small subunit YpsIP31758_3304 137 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 153947411 Common - conserved hypothetical protein TIGR00726 YpsIP31758_3213 180 COG1496 COG1496, Uncharacterized conserved protein Function unknown 153948256 Common - hypothetical protein YpsIP31758_0762 7 None None None 153947996 Common ccmF cytochrome c-type biogenesis protein CcmF YpsIP31758_1392 163 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 153948748 Pathogen - hypothetical protein YpsIP31758_2415 1 None None None 153949607 Common - putative sugar ABC transporter, periplasmic sugar-binding protein YpsIP31758_0148 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153949906 Common hpt hypoxanthine phosphoribosyltransferase YpsIP31758_3351 151 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 153949268 Common ybgC tol-pal system-associated acyl-CoA thioesterase YpsIP31758_2872 134 COG0824 FcbC, Predicted thioesterase General function prediction only 153947298 Common - hypothetical protein YpsIP31758_1821 117 COG2353 COG2353, Uncharacterized conserved protein Function unknown 153950444 Common - heavy metal ABC transporter (HMT) family, permease protein/ATP-binding protein YpsIP31758_2965 249 COG5265 ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components Posttranslational modification, protein turnover, chaperones 153947093 Common - hypothetical protein YpsIP31758_0098 17 COG3152 COG3152, Predicted membrane protein Function unknown 153948847 Common - oxidoreductase, NAD-binding YpsIP31758_0345 140 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153948146 Common lysP lysine-specific permease LysP YpsIP31758_2670 144 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 153950512 Common ubiG 3-demethylubiquinone-9 3-methyltransferase YpsIP31758_2768 166 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 153949528 Common - hypothetical protein YpsIP31758_3715 80 COG0433 COG0433, Predicted ATPase General function prediction only 153950335 Pathogen - hypothetical protein YpsIP31758_0537 1 None None None 153947691 Common - putative spermidine/putrescine ABC transporter, ATP-binding protein YpsIP31758_2056 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 153947984 Common - cold shock DNA-binding domain protein YpsIP31758_2958 181 COG1278 CspC, Cold shock proteins Transcription 153949434 Common ispB octaprenyl-diphosphate synthase YpsIP31758_3613 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 153948868 Common arnA bifunctional polymyxin resistance ArnA protein YpsIP31758_1727 244 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 153949615 Common - DNA-binding response regulator, LuxR family YpsIP31758_2402 192 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153948072 Pathogen - hypothetical protein YpsIP31758_1489 1 None None None 153950123 Common - IS1541, transposase YpsIP31758_3224 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949243 Common slyD peptidyl-prolyl cis-trans isomerase SlyD YpsIP31758_3928 118 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 153949139 Pathogen - hypothetical protein YpsIP31758_2378 3 None None None 153950682 Common minD septum site-determining protein MinD YpsIP31758_2011 144 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 153947170 Pathogen - hypothetical protein YpsIP31758_0846 1 None None None 153950143 Common - ABC transporter, ATP-binding protein YpsIP31758_0442 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 153946904 Common - transcriptional regulator, PadR family YpsIP31758_0905 73 COG1695 COG1695, Predicted transcriptional regulators Transcription 153948915 Common - putative virulence factor SrfB YpsIP31758_1843 14 COG4457 SrfB, Uncharacterized protein conserved in bacteria, putative virulence factor Function unknown 153949487 Common - acetyltransferase, GNAT family YpsIP31758_1252 48 COG1444 COG1444, Predicted P-loop ATPase fused to an acetyltransferase General function prediction only 153947438 Common - hypothetical protein YpsIP31758_0754 23 None None None 153949736 Pathogen - hypothetical protein YpsIP31758_2315 1 None None None 153950851 Common - carbonic anhydrase YpsIP31758_3350 115 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 153948861 Common rcsC sensor kinase protein RcsC YpsIP31758_2765 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153948980 Common - hypothetical protein YpsIP31758_2199 8 None None None 153947088 Common nuoA NADH-quinone oxidoreductase, A subunit YpsIP31758_1454 162 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 153949910 Common hasA hemophore HasA YpsIP31758_0131 3 None None None 153948095 Common aguA agmatine deiminase YpsIP31758_0832 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 153950472 Common mlc Mlc protein YpsIP31758_1869 157 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 153950457 Common fepD ferric enterobactin ABC transporter, permease protein FepD YpsIP31758_2442 184 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 153950234 Common - hypothetical protein YpsIP31758_3791 24 None None None 153949963 Common sdhD succinate dehydrogenase, hydrophobic membrane anchor protein YpsIP31758_2884 54 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 153950364 Common - putative insecticidal toxin complex protein YpsIP31758_0408 45 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153947261 Common metQ D-methionine ABC transporter, periplasmic D-methionine-binding protein YpsIP31758_1041 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 153948820 Common - transporter, major facilitator family YpsIP31758_3242 73 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 153948546 Common - membrane protein TerC family/CBS domain protein YpsIP31758_2450 219 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 153947112 Common - M23 peptidase domain protein YpsIP31758_2500 8 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 153948719 Common oppC oligopeptide ABC transporter, permease protein OppC YpsIP31758_1958 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153950324 Pathogen - hypothetical protein YpsIP31758_3009 1 None None None 153949363 Common - lipase family protein YpsIP31758_1123 7 COG5153 CVT17, Putative lipase essential for disintegration of autophagic bodies inside the vacuole Intracellular trafficking and secretion / Lipid metabolism 153947511 Pathogen - hypothetical protein YpsIP31758_3693 3 None None None 153948975 Common rbsB5 ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_3253 100 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153947616 Common moeA molybdopterin biosynthesis protein YpsIP31758_2480 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 153948987 Pathogen - hypothetical protein YpsIP31758_1975 1 None None None 153950896 Common - hypothetical protein YpsIP31758_0168 10 None None None 153946869 Common - UDP-glycosyltransferase family protein YpsIP31758_2100 13 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 153948837 Common frwC PTS system, fructose-specific EIIC component 2 YpsIP31758_3529 67 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 153948895 Common cmtB mannitol-specific cryptic phosphotransferase enzyme IIA component YpsIP31758_1440 67 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 153949948 Common mdoH glucans biosynthesis glucosyltransferase H YpsIP31758_1553 53 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 153950362 Common - glycosyl transferase, group 2 family protein YpsIP31758_3933 178 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 153948036 Common - peptidase, M16 family YpsIP31758_4063 62 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 153949107 Common fabF 3-oxoacyl-(acyl-carrier-protein) synthase 2 YpsIP31758_1580 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153950433 Common - IS3 family transposase, orfB YpsIP31758_2077 122 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 153948466 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, permease protein YpsIP31758_2310 99 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153949515 Common - TonB-dependent siderophore receptor YpsIP31758_0815 120 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 153948171 Common - hypothetical protein YpsIP31758_0519 24 None None None 153949835 Pathogen - hypothetical protein YpsIP31758_0751 1 None None None 153949316 Common - putative insecticidal toxin complex protein YpsIP31758_0407 48 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153950849 Common trxB thioredoxin-disulfide reductase YpsIP31758_2598 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 153946947 Common - conserved hypothetical protein TIGR00246 YpsIP31758_2948 163 COG1576 COG1576, Uncharacterized conserved protein Function unknown 153948695 Common suhB inositol-1-monophosphatase YpsIP31758_1165 214 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 153950105 Common - acylphosphatase YpsIP31758_2530 63 COG1254 AcyP, Acylphosphatases Energy production and conversion 153947389 Common nagC N-acetylglucosamine repressor YpsIP31758_2911 164 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 153950033 Common - competence/damage-inducible protein CinA domain protein YpsIP31758_3241 192 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 153947827 Common pgm phosphoglucomutase, alpha-D-glucose phosphate-specific YpsIP31758_1099 224 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 153948455 Pathogen - hypothetical protein YpsIP31758_0360 1 None None None 153950672 Common - iron-sulfur cluster-binding protein, KamA family YpsIP31758_3673 126 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 153948124 Pathogen - hypothetical protein YpsIP31758_1558 1 None None None 153949887 Common - conserved hypothetical protein TIGR00103 YpsIP31758_3058 173 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 153949577 Pathogen - hypothetical protein YpsIP31758_2897 1 None None None 153947163 Common ribD riboflavin biosynthesis protein RibD YpsIP31758_3117 221 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 153949492 Pathogen - hypothetical protein YpsIP31758_0810 1 None None None 153947233 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase YpsIP31758_3124 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 153947720 Pathogen - viral enhancin protein YpsIP31758_3749 3 None None None 153948408 Common - putative insecticial toxin complex protein YpsIP31758_0416 6 None None None 153947057 Common - sensor histidine kinase CpxA YpsIP31758_1314 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153948281 Pathogen - hypothetical protein YpsIP31758_3502 1 COG5487 COG5487, Small integral membrane protein Function unknown 153949490 Common lamB maltoporin LamB YpsIP31758_0309 27 COG4580 LamB, Maltoporin (phage lambda and maltose receptor) Carbohydrate transport and metabolism 153950899 Common - putative ribose ABC transporter, ATP-binding protein YpsIP31758_2688 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153947415 Common phoR phosphate regulon sensor kinase PhoR YpsIP31758_3135 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 153950705 Pathogen - hypothetical protein YpsIP31758_2490 6 None None None 153949894 Common - efflux ABC transporter, ATP-binding/permease protein YpsIP31758_1311 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153947518 Common - acyl-coenzyme A dehydrogenase domain protein YpsIP31758_3171 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 153946898 Common folC FolC bifunctional protein YpsIP31758_1423 217 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 153950495 Common - phosphonate ABC transporter, permease protein YpsIP31758_2796 90 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 153948732 Common rnk regulator of nucleoside diphosphate kinase YpsIP31758_0429 74 COG0782 GreA, Transcription elongation factor Transcription 153947200 Common pntA NAD(P) transhydrogenase, alpha subunit YpsIP31758_1830 166 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 153948313 Common - gram-negative pili assembly chaperone YpsIP31758_2677 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153948840 Common - transcriptional regulator, AraC family YpsIP31758_0588 133 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153947408 Common fliF1 flagellar M-ring protein FliF YpsIP31758_2290 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 153947364 Common - hypothetical protein YpsIP31758_3451 43 COG2966 COG2966, Uncharacterized conserved protein Function unknown 153949957 Pathogen - hypothetical protein YpsIP31758_1278 1 None None None 153950887 Common - DNA-binding protein YpsIP31758_1817 26 COG1476 COG1476, Predicted transcriptional regulators Transcription 153947386 Pathogen - hypothetical protein YpsIP31758_0987 5 None None None 153949708 Common dinJ DNA-damage-inducible protein J YpsIP31758_0357 5 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 153948230 Common - putative permease YpsIP31758_3542 82 COG0795 COG0795, Predicted permeases General function prediction only 153949303 Common htrB2 lipid A biosynthesis lauroyl acyltransferase YpsIP31758_0361 79 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 153947559 Common - antioxidant, AhpC/TSA family YpsIP31758_3126 220 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 153950910 Common cheZ chemotaxis protein CheZ YpsIP31758_1647 42 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153947082 Common - membrane protein TerC family/CBS domain protein YpsIP31758_2367 217 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 153950198 Common hpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YpsIP31758_2363 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153950757 Common livF high-affinity branched-chain amino acid ABC transporter, ATP-binding protein YpsIP31758_0248 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 153949288 Common - Sua5/YciO/YrdC/YwlC family protein YpsIP31758_1929 226 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 153950861 Common - hypothetical protein YpsIP31758_1285 2 None None None 153949605 Pathogen - hypothetical protein YpsIP31758_2934 1 None None None 153948749 Common pmbA pmbA protein YpsIP31758_0426 158 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 153948578 Common znuB high-affinity zinc uptake ABC transporter, permease protein YpsIP31758_2029 182 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 153947124 Common - twitching motility protein YpsIP31758_0831 215 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 153946924 Common - hypothetical protein YpsIP31758_0572 19 COG5463 COG5463, Predicted integral membrane protein Function unknown 153949983 Common speE spermidine synthase YpsIP31758_3354 128 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 153947603 Common - hypothetical protein YpsIP31758_3793 24 None None None 153950317 Common - hypothetical protein YpsIP31758_0888 13 None None None 153950006 Common - tellurium resistance protein YpsIP31758_0507 27 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 153949656 Pathogen - hypothetical protein YpsIP31758_1504 1 None None None 153947034 Common mutT mutator mutT protein YpsIP31758_3377 168 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 153947271 Common pabA para-aminobenzoate synthase glutamine amidotransferase component II YpsIP31758_3948 235 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 153949324 Common - putative autotransporter protein YpsIP31758_0673 105 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153949499 Common truD tRNA pseudouridine synthase D YpsIP31758_3297 85 COG0585 COG0585, Uncharacterized conserved protein Function unknown 153947146 Common basS sensor protein BasS/PmrB YpsIP31758_3608 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153950371 Common - transporter, major facilitator family YpsIP31758_2005 16 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153949581 Common fliA1 RNA polymerase sigma factor for flagellar operon YpsIP31758_2280 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 153949791 Common - aminotransferase, classes I and II YpsIP31758_1307 231 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 153947228 Common rho transcription termination factor Rho YpsIP31758_0180 201 COG1158 Rho, Transcription termination factor Transcription 153948650 Pathogen - hypothetical protein YpsIP31758_2484 1 None None None 153950352 Pathogen - hypothetical protein YpsIP31758_4156 1 None None None 153946864 Common - DNA-binding response regulator YpsIP31758_1304 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153949109 Common surA chaperone SurA YpsIP31758_3442 156 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 153950699 Common gmhA1 phosphoheptose isomerase YpsIP31758_3170 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 153948668 Common pepA cytosol aminopeptidase YpsIP31758_3543 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 153949126 Common zntB zinc transport protein zntB YpsIP31758_1799 119 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 153949207 Common - tartrate dehydrogenase YpsIP31758_1512 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 153946814 Common - sulfatase YpsIP31758_0931 86 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 153949102 Common - sodium:dicarboxylate symporter family protein YpsIP31758_1685 154 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 153947789 Common tauB taurine ABC transporter, ATP-binding protein YpsIP31758_3937 249 COG4525 TauB, ABC-type taurine transport system, ATPase component Inorganic ion transport and metabolism 153949818 Common sfsB Sugar fermentation stimulation protein B YpsIP31758_3615 24 COG3423 Nlp, Predicted transcriptional regulator Transcription 153950523 Common ilvC ketol-acid reductoisomerase YpsIP31758_0163 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 153949197 Common hpaX 4-hydroxyphenylacetate permease YpsIP31758_2358 132 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153950932 Common - hypothetical protein YpsIP31758_2254 10 None None None 153947018 Common - putative sugar-binding domain protein YpsIP31758_1813 67 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 153947781 Common - hypothetical protein YpsIP31758_2631 4 COG4408 COG4408, Uncharacterized protein conserved in bacteria Function unknown 153950291 Common fliE2 flagellar hook-basal body complex protein FliE YpsIP31758_0630 45 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 153947331 Pathogen - hypothetical protein YpsIP31758_1386 1 None None None 153947769 Common - putative DNA-binding response regulator EsrB YpsIP31758_3833 183 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153947221 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_2472 168 COG0583 LysR, Transcriptional regulator Transcription 153946928 Common - hypothetical protein YpsIP31758_2587 40 COG1944 COG1944, Uncharacterized conserved protein Function unknown 153950870 Common - hypothetical protein YpsIP31758_0801 39 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 153946876 Common - hypothetical protein YpsIP31758_0718 19 COG4099 COG4099, Predicted peptidase General function prediction only 153948647 Common - RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YpsIP31758_0668 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153949453 Common nuoG NADH-quinone oxidoreductase, G subunit YpsIP31758_1459 181 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 153947041 Common - putative deoxyribose-phosphate aldolase YpsIP31758_0350 120 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 153947717 Common - IS1541, transposase YpsIP31758_3858 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153950419 Common phnP phosphonate metabolism protein PhnP YpsIP31758_3568 87 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 153948754 Common leuS leucyl-tRNA synthetase YpsIP31758_2926 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153949800 Common - hypothetical protein YpsIP31758_3792 15 None None None 153949781 Pathogen - hypothetical protein YpsIP31758_2629 1 None None None 153948044 Common mrdB rod shape-determining protein RodA YpsIP31758_2950 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 153949672 Common uxaC glucuronate isomerase YpsIP31758_0491 59 COG1904 UxaC, Glucuronate isomerase Carbohydrate transport and metabolism 153946873 Common gltK glutamate/aspartate ABC transporter, permease protein GltK YpsIP31758_2922 176 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153950766 Common fcl GDP-L-fucose synthetase YpsIP31758_3040 215 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153948041 Common psiF phosphate starvation-inducible protein PsiF YpsIP31758_2859 22 None None None 153948024 Pathogen - hypothetical protein YpsIP31758_2232 1 None None None 153948767 Common - putative transposase YpsIP31758_3726 29 COG5464 COG5464, Uncharacterized conserved protein Function unknown 153950100 Pathogen - hypothetical protein YpsIP31758_1148 1 None None None 153949591 Common fadI acetyl-CoA C-acyltransferase FadI YpsIP31758_1399 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 153949222 Common cyoE protoheme IX farnesyltransferase YpsIP31758_3102 171 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 153947629 Common oppB oligopeptide ABC transporter, permease protein OppB YpsIP31758_1959 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153946859 Common - hypothetical protein YpsIP31758_2071 10 None None None 153947329 Pathogen - hypothetical protein YpsIP31758_4109 1 None None None 153948603 Common - hypothetical protein YpsIP31758_1360 40 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 153950310 Common rpmI ribosomal protein L35 YpsIP31758_1714 140 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 153947985 Common - translation initiation factor IF-2 YpsIP31758_3596 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 153948920 Common - putative sugar-specific permease, SgaT/UlaA family YpsIP31758_1437 36 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 153948836 Common - lipoprotein, NlpC/P60 family YpsIP31758_1757 129 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 153949811 Common fdhE formate dehydrogenase accessory protein FdhE YpsIP31758_4116 40 COG3058 FdhE, Uncharacterized protein involved in formate dehydrogenase formation Posttranslational modification, protein turnover, chaperones 153947448 Common - AsmA family protein YpsIP31758_4058 36 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 153950450 Common priB primosomal replication protein n YpsIP31758_3638 28 COG2965 PriB, Primosomal replication protein N DNA replication, recombination, and repair 153947487 Common - fimbrial protein YpsIP31758_4107 17 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153947218 Common endA endonuclease I YpsIP31758_0839 32 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 153950204 Common xylA xylose isomerase YpsIP31758_4102 69 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 153948582 Common - transcriptional regulator, RpiR family YpsIP31758_1297 136 COG1737 RpiR, Transcriptional regulators Transcription 153950359 Common cyoA cytochrome o ubiquinol oxidase, subunit II YpsIP31758_3098 107 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 153949475 Pathogen - hypothetical protein YpsIP31758_0488 2 None None None 153948193 Common - putative DNA circulation protein YpsIP31758_2737 19 COG4228 COG4228, Mu-like prophage DNA circulation protein General function prediction only 153949952 Common rsmE ribosomal small subunit methyltransferase RsmE YpsIP31758_0837 198 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 153948506 Common tolB Tol-Pal system beta propeller repeat protein TolB YpsIP31758_2868 161 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 153948791 Common basR transcriptional regulatory protein BasR/PmrA YpsIP31758_3607 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153947833 Pathogen - hypothetical protein YpsIP31758_1657 3 None None None 153947314 Common - hypothetical protein YpsIP31758_4018 3 None None None 153947744 Common phnM phosphonate metabolism protein PhnM YpsIP31758_3566 52 COG3454 COG3454, Metal-dependent hydrolase involved in phosphonate metabolism Inorganic ion transport and metabolism 153949820 Common yafA esterase YafA YpsIP31758_3152 26 COG3458 COG3458, Acetyl esterase (deacetylase) Secondary metabolites biosynthesis, transport, and catabolism 153950774 Common deoC1 deoxyribose-phosphate aldolase YpsIP31758_3498 135 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 153947446 Common ytbI N-acylhomoserine lactone synthase YtbI YpsIP31758_0719 19 COG3916 LasI, N-acyl-L-homoserine lactone synthetase Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 153948996 Common ftsY cell division protein FtsY YpsIP31758_0239 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 153948248 Pathogen - hypothetical protein YpsIP31758_0346 1 None None None 153948177 Common - conserved hypothetical protein TIGR00247 YpsIP31758_1582 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 153950587 Pathogen - hypothetical protein YpsIP31758_3229 1 None None None 153946881 Common - hypothetical protein YpsIP31758_0729 21 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 153948524 Pathogen - hypothetical protein YpsIP31758_3176 1 None None None 153949549 Common - hypothetical protein YpsIP31758_0474 125 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 153948105 Common - hypothetical protein YpsIP31758_3695 43 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153950833 Pathogen - hypothetical protein YpsIP31758_2709 1 None None None 153946830 Common - hypothetical protein YpsIP31758_2095 21 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 153947238 Common - glycerophosphoryl diester phosphodiesterase family protein YpsIP31758_2060 77 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 153948902 Common - asmA family protein YpsIP31758_0033 13 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 153950228 Common - 4'-phosphopantetheinyl transferase family protein YpsIP31758_2398 36 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 153947353 Pathogen - hypothetical protein YpsIP31758_1490 1 None None None 153949566 Common - putative haemagglutinin/invasin YpsIP31758_2585 20 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 153948086 Pathogen - hypothetical protein YpsIP31758_0251 2 None None None 153947062 Pathogen - hypothetical protein YpsIP31758_0773 1 None None None 153950649 Common hisQ histidine ABC transporter, permease protein HisQ YpsIP31758_1429 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 153949410 Common speA biosynthetic arginine decarboxylase YpsIP31758_0843 165 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 153948343 Common artM arginine ABC transporter, permease protein ArtM YpsIP31758_2628 170 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 153947638 Common hasD type I secretion ATP-binding protein YpsIP31758_0132 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 153949013 Common - ABC transporter, ATP-binding protein YpsIP31758_2483 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 153950641 Common betB betaine aldehyde dehydrogenase YpsIP31758_2830 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153948616 Common - hypothetical protein YpsIP31758_1609 4 None None None 153950866 Common - chorismate binding enzyme domain protein YpsIP31758_2109 125 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 153947811 Common priC primosomal replication protein n'' YpsIP31758_3062 20 COG3923 PriC, Primosomal replication protein N'' DNA replication, recombination, and repair 153948006 Common menD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YpsIP31758_1482 77 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 153948942 Common lsrB autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein YpsIP31758_3524 51 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153948502 Common trmA tRNA (uracil-5-)-methyltransferase YpsIP31758_0141 151 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 153948541 Common sodC copper/zinc superoxide dismutase YpsIP31758_3315 87 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 153949258 Pathogen - hypothetical protein YpsIP31758_2755 1 None None None 153947097 Common - haemagglutinin repeat protein YpsIP31758_0868 22 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 153949381 Common accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit YpsIP31758_1422 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 153949719 Common speC ornithine decarboxylase, constitutive YpsIP31758_0811 81 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 153947304 Pathogen - hypothetical protein YpsIP31758_0512 1 None None None 153949283 Pathogen - hypothetical protein YpsIP31758_0523 1 None None None 153950177 Common - Fic family protein YpsIP31758_0548 30 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 153949436 Common - MaoC domain protein YpsIP31758_2157 73 COG2030 MaoC, Acyl dehydratase Lipid metabolism 153948934 Pathogen - hypothetical protein YpsIP31758_2144 1 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 153948923 Common - hypothetical protein YpsIP31758_1188 63 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 153950030 Common - transporter, betaine/carnitine/choline transporter (BCCT) family protein YpsIP31758_1515 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 153947662 Common - thioester dehydratase family protein YpsIP31758_2521 183 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 153948092 Common - sensory box histidine kinase/response regulator YpsIP31758_4031 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153950357 Common - PTS system, mannose/fructose/sorbose family, IID component YpsIP31758_2370 41 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 153950196 Common - hypothetical protein YpsIP31758_2214 3 None None None 153947138 Common - sulfite reductase [NADPH] flavoprotein, alpha-component YpsIP31758_3311 102 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 153950219 Common - amino acid ABC transporter, permease protein YpsIP31758_2273 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153947333 Common rluB ribosomal large subunit pseudouridine synthase B YpsIP31758_1928 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 153949666 Common recD exodeoxyribonuclease V, alpha subunit YpsIP31758_0992 125 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 153948510 Common - transporter, major facilitator family YpsIP31758_2592 88 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948527 Common rpoE RNA polymerase sigma factor RpoE YpsIP31758_1129 175 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 153949421 Common - methyl-accepting chemotaxis protein YpsIP31758_4122 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153948128 Common - transcriptional regulator, IclR family, C-terminal domain protein YpsIP31758_1683 124 COG1414 IclR, Transcriptional regulator Transcription 153947885 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, periplasmic carbohydrate-binding protein YpsIP31758_3265 77 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153947791 Common - hypothetical protein YpsIP31758_0727 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 153950044 Common rpoB DNA-directed RNA polymerase, beta subunit YpsIP31758_3860 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 153946987 Common malG maltose ABC transporter, permease protein YpsIP31758_0304 186 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 153949994 Common - hypothetical protein YpsIP31758_1253 11 None None None 153947196 Pathogen - hypothetical protein YpsIP31758_1222 1 None None None 153946915 Common - transcriptional regulator, AraC family YpsIP31758_1897 89 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153950661 Common acrA acriflavine resistance protein A YpsIP31758_3067 146 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153950330 Common glmM phosphoglucosamine mutase YpsIP31758_3600 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 153949468 Common flgH2 flagellar L-ring protein FlgH YpsIP31758_0645 99 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 153950212 Pathogen - hypothetical protein YpsIP31758_0223 3 None None None 153948375 Common - transcriptional regulator, AraC family YpsIP31758_1417 85 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153949783 Pathogen - hypothetical protein YpsIP31758_2279 1 None None None 153949177 Common - thioesterase family protein YpsIP31758_3086 26 COG0824 FcbC, Predicted thioesterase General function prediction only 153949564 Common - PTS system, EIIB component YpsIP31758_0919 49 COG1264 PtsG, Phosphotransferase system IIB components Carbohydrate transport and metabolism 153950800 Common gor glutathione-disulfide reductase YpsIP31758_4049 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 153946955 Common panE 2-dehydropantoate 2-reductase YpsIP31758_3106 101 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 153947118 Common - hypothetical protein YpsIP31758_0320 49 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 153948645 Common - sugar ABC transporter, ATP-binding protein YpsIP31758_0813 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153948755 Common katG catalase/peroxidase HPI YpsIP31758_3254 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 153949234 Common - spore coat U domain protein YpsIP31758_1661 18 COG5430 COG5430, Uncharacterized secreted protein Function unknown 153950342 Common - putative lipoprotein YpsIP31758_3845 11 None None None 153948338 Common - lipoprotein, NlpC/P60 family YpsIP31758_1732 129 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 153949920 Common - putative lipoprotein YpsIP31758_0230 10 None None None 153950464 Common - putative membrane-bound lytic murein transglycosylase C YpsIP31758_0817 123 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 153948682 Common clpS ATP-dependent Clp protease adaptor protein ClpS YpsIP31758_2607 122 COG2127 COG2127, Uncharacterized conserved protein Function unknown 153947829 Pathogen - hypothetical protein YpsIP31758_3816 1 None None None 153949374 Common - aspartate aminotransferase YpsIP31758_2560 73 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 153950134 Pathogen - hypothetical protein YpsIP31758_3983 1 None None None 153950392 Common - LemA family protein YpsIP31758_1382 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 153948543 Common fnt formate/nitrite transporter YpsIP31758_3958 88 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 153950399 Common - peptidase, M48 family YpsIP31758_1239 129 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 153948004 Common wbyH O-antigen synthesis protein WbyH YpsIP31758_3047 29 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 153946892 Common purN phosphoribosylglycinamide formyltransferase YpsIP31758_1233 222 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 153949632 Common - hypothetical protein YpsIP31758_0419 13 None None None 153947652 Common - hypothetical protein YpsIP31758_1367 49 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 153950206 Common rtn protein rtn YpsIP31758_2710 163 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 153947107 Common - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family YpsIP31758_0862 138 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 153947505 Common glgA glycogen synthase YpsIP31758_4003 128 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 153948014 Common - putative prepilin peptidase dependent protein YpsIP31758_0986 16 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 153948909 Common - conserved hypothetical protein TIGR02293 YpsIP31758_1793 23 COG5642 COG5642, Uncharacterized conserved protein Function unknown 153947055 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2311 230 COG3347 COG3347, Uncharacterized conserved protein Function unknown 153949451 Pathogen - hypothetical protein YpsIP31758_1708 1 None None None 153949558 Common oppD oligopeptide ABC transporter, ATP-binding protein OppD YpsIP31758_1957 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 153947631 Pathogen - putative flagellar protein YpsIP31758_0659 4 None None None 153948670 Common malK1 maltose/maltodextrin ABC transporter, ATP-binding protein YpsIP31758_0913 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153947708 Common cysI sulfite reductase (NADPH) hemoprotein, beta-component YpsIP31758_3310 149 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 153949340 Common prmA ribosomal protein L11 methyltransferase YpsIP31758_0388 173 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 153948112 Common - NAD dependent epimerase/dehydratase family protein YpsIP31758_2621 104 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153948398 Common - hypothetical protein YpsIP31758_1952 3 None None None 153949045 Pathogen - hypothetical protein YpsIP31758_1654 1 None None None 153949388 Common artP arginine ABC transporter, ATP-binding protein YpsIP31758_2625 249 COG4161 ArtP, ABC-type arginine transport system, ATPase component Amino acid transport and metabolism 153949771 Common proV glycine betaine/L-proline ABC transporter, ATP-binding protein YpsIP31758_1061 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 153946832 Common - hypothetical protein YpsIP31758_2693 35 COG3970 COG3970, Fumarylacetoacetate (FAA) hydrolase family protein General function prediction only 153946974 Common - methyltransferase family protein YpsIP31758_3507 105 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 153947864 Common - hypothetical protein YpsIP31758_3794 23 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 153950685 Common wzz chain length determinant family protein Wzz YpsIP31758_3036 13 COG3765 WzzB, Chain length determinant protein Cell envelope biogenesis, outer membrane 153946854 Common - mce family protein YpsIP31758_1668 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 153950754 Common pip proline iminopeptidase YpsIP31758_2344 106 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 153949676 Common - hypothetical protein YpsIP31758_1209 31 COG3422 COG3422, Uncharacterized conserved protein Function unknown 153950530 Common - siderophore biosynthesis protein, IucA/IucC family YpsIP31758_2439 49 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 153949863 Common hisS histidyl-tRNA synthetase YpsIP31758_1187 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153949745 Pathogen - hypothetical protein YpsIP31758_0362 1 None None None 153950807 Common - haemolysin secretion/activation protein, ShlB/FhaC/HecB family YpsIP31758_1518 56 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 153948069 Common iucD aerobactin siderophore biosynthesis protein IucD YpsIP31758_0711 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 153949009 Common - oxidase, FAD binding YpsIP31758_1739 202 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 153948243 Common sulA cell division inhibitor SulA YpsIP31758_2540 15 COG5404 SulA, SOS-response cell division inhibitor, blocks FtsZ ring formation Cell division and chromosome partitioning 153949132 Common rpsK ribosomal protein S11 YpsIP31758_3892 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 153950337 Common ddhD CDP-6-deoxy-delta-3,4-glucoseen reductase YpsIP31758_3052 153 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 153950827 Common - hypothetical protein YpsIP31758_1357 5 None None None 153948655 Common - transcriptional regulator YpsIP31758_0652 22 COG3710 CadC, DNA-binding winged-HTH domains Transcription 153950154 Common - Mg chelatase-like protein YpsIP31758_0153 191 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 153949546 Common phnD phosphonate ABC transporter, periplasmic phosphonate-binding protein YpsIP31758_2798 86 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 153950731 Common kdpC K+-transporting ATPase, C subunit YpsIP31758_1104 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 153950095 Common - hydrophobic amino acid ABC transporter (HAAT) family, permease protein YpsIP31758_2792 144 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 153949033 Common - glyoxalase family protein YpsIP31758_1030 42 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 153948773 Common nagB glucosamine-6-phosphate isomerase YpsIP31758_2909 86 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 153947517 Common secE preprotein translocase, SecE subunit YpsIP31758_3866 69 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 153950487 Common - putative lipoprotein YpsIP31758_0906 6 None None None 153950796 Common kefG glutathione-regulated potassium-efflux system ancillary protein KefG YpsIP31758_3931 62 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 153947395 Common - IS1541, transposase YpsIP31758_2543 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153948986 Common sixA phosphohistidine phosphatase SixA YpsIP31758_1402 70 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 153950610 Common hmuT hemin ABC transporter, periplasmic hemin-binding protein YpsIP31758_3803 127 COG4558 ChuT, ABC-type hemin transport system, periplasmic component Inorganic ion transport and metabolism 153948238 Common kduD2 2-deoxy-D-gluconate 3-dehydrogenase YpsIP31758_0935 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153950008 Common - Divergent polysaccharide deacetylase YpsIP31758_0073 66 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 153950417 Pathogen - hypothetical protein YpsIP31758_3558 1 None None None 153950916 Pathogen - hypothetical protein YpsIP31758_4039 1 None None None 153947678 Common sthA soluble pyridine nucleotide transhydrogenase YpsIP31758_0137 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 153947004 Pathogen - hypothetical protein YpsIP31758_1658 1 None None None 153950260 Common pyrE orotate phosphoribosyltransferase YpsIP31758_0057 139 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 153950740 Common nadC nicotinate-nucleotide pyrophosphorylase YpsIP31758_3369 205 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 153949053 Common ispZ intracellular septation protein A YpsIP31758_1944 92 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 153949723 Common hisJ histidine ABC transporter, periplasmic histidine-binding protein YpsIP31758_1428 180 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153947557 Common - putative NAD(P)H quinone oxidoreductase, PIG3 family YpsIP31758_1628 199 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 153947919 Common - hypothetical protein YpsIP31758_4019 7 None None None 153950166 Common tldD TldD protein YpsIP31758_0405 170 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 153949318 Common - putative sulfatase regulator YpsIP31758_0932 77 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 153947246 Common - hypothetical protein YpsIP31758_0504 9 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 153947612 Common purF amidophosphoribosyltransferase YpsIP31758_1426 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 153948351 Common deoD purine nucleoside phosphorylase YpsIP31758_3495 94 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 153950656 Pathogen - hypothetical protein YpsIP31758_2925 1 None None None 153949349 Common fdoI aerobic formate dehydrogenase, cytochrome b556 subunit YpsIP31758_4117 66 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 153949827 Common - putative autotransporter protein YpsIP31758_3775 81 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153949706 Common - class II aldolase/adducin N-terminal domain protein YpsIP31758_3182 95 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 153949245 Pathogen trpL trp operon leader peptide YpsIP31758_1931 1 None None None 153950140 Common - NAD dependent epimerase/dehydratase family protein YpsIP31758_2419 16 COG3320 COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 153950729 Common rfaD ADP-L-glycero-D-manno-heptose-6-epimerase YpsIP31758_0070 229 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153946841 Pathogen - hypothetical protein YpsIP31758_2679 1 None None None 153949911 Common - frimbrial protein YpsIP31758_1363 21 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153948271 Common - peptidyl-prolyl cis-trans isomerase, FKBP-type YpsIP31758_3926 139 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 153946907 Common flhA1 flagellar biosynthesis protein FlhA YpsIP31758_2333 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 153947913 Common asnA aspartate--ammonia ligase YpsIP31758_0003 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 153949083 Common - amino acid permease family protein YpsIP31758_0565 114 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 153947464 Common - DJ-1 family protein YpsIP31758_3107 93 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 153948825 Common - hypothetical protein YpsIP31758_0097 11 None None None 153950909 Common cmk cytidylate kinase YpsIP31758_2581 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 153948801 Common - fimbrial protein YpsIP31758_2163 19 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153947424 Pathogen - hypothetical protein YpsIP31758_1621 1 None None None 153950112 Common - bacterial shufflon protein YpsIP31758_3727 12 None None None 153948973 Common - hypothetical protein YpsIP31758_1734 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 153947873 Common - hypothetical protein YpsIP31758_1809 18 None None None 153949219 Common hutC histidine utilization repressor YpsIP31758_2112 126 COG2188 PhnF, Transcriptional regulators Transcription 153948530 Common rpmH ribosomal protein L34 YpsIP31758_4154 86 None None None 153947636 Common - IS1541, transposase YpsIP31758_3398 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947528 Common - crispr-associated protein, Csy2 family YpsIP31758_1538 19 None None None 153950349 Pathogen - hypothetical protein YpsIP31758_2991 1 None None None 153949359 Common - hypothetical protein YpsIP31758_0545 28 COG3531 COG3531, Predicted protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 153948438 Common - outer membrane lipoprotein, Slp family YpsIP31758_2015 28 COG3065 Slp, Starvation-inducible outer membrane lipoprotein Cell envelope biogenesis, outer membrane 153950121 Common - acetyltransferase, GNAT family YpsIP31758_3546 30 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 153950053 Common - hypothetical protein YpsIP31758_3569 44 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153949712 Common - inner membrane protein CreD YpsIP31758_0877 29 COG4452 CreD, Inner membrane protein involved in colicin E2 resistance Defense mechanisms 153948620 Common fliN1 flagellar motor switch protein FliN YpsIP31758_2300 124 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 153949761 Common tuf1 translation elongation factor Tu YpsIP31758_3918 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 153946829 Pathogen - hypothetical protein YpsIP31758_1379 1 None None None 153948573 Common - pentapeptide repeat protein YpsIP31758_3427 79 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 153947853 Common ureG urease accessory protein UreG YpsIP31758_1082 149 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 153949961 Common - hypothetical protein YpsIP31758_2674 110 COG2855 COG2855, Predicted membrane protein Function unknown 153950760 Common mrcB penicillin-binding protein 1B YpsIP31758_3334 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 153948632 Common pdhR pyruvate dehydrogenase complex repressor YpsIP31758_3364 144 COG2186 FadR, Transcriptional regulators Transcription 153947254 Pathogen - hypothetical protein YpsIP31758_2090 1 None None None 153947086 Common menB naphthoate synthase YpsIP31758_1484 179 COG0447 MenB, Dihydroxynaphthoic acid synthase Coenzyme metabolism 153948629 Common - hypothetical protein YpsIP31758_2037 31 COG3788 COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily General function prediction only 153949266 Common pstA1 phosphate ABC transporter, permease protein PstA YpsIP31758_4169 227 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 153947994 Common - cyaY protein YpsIP31758_0203 43 COG1965 CyaY, Protein implicated in iron transport, frataxin homolog Inorganic ion transport and metabolism 153949212 Pathogen - hypothetical protein YpsIP31758_2684 1 None None None 153948876 Pathogen - hypothetical protein YpsIP31758_2105 1 None None None 153948483 Pathogen - hypothetical protein YpsIP31758_2989 3 None None None 153948697 Common - hypothetical protein YpsIP31758_3432 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 153947671 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_1441 126 COG1609 PurR, Transcriptional regulators Transcription 153947760 Common - methyltransferase family protein YpsIP31758_0500 89 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 153947903 Common flgM negative regulator of flagellin synthesis YpsIP31758_2327 14 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 153949594 Common - oxidoreductase, aldo/keto reductase family YpsIP31758_2998 185 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 153947539 Common - Rhs element Vgr protein YpsIP31758_0785 51 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153948089 Common - transcriptional regulator, DeoR family YpsIP31758_2746 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 153950369 Common fldA flavodoxin 1 YpsIP31758_2901 74 COG0716 FldA, Flavodoxins Energy production and conversion 153949999 Pathogen - hypothetical protein YpsIP31758_4041 2 None None None 153947736 Common - ABC maltose/maltodextrin transporter, permease subunit YpsIP31758_0915 139 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153950651 Common betA choline dehydrogenase YpsIP31758_2831 91 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 153950566 Common - hypothetical protein YpsIP31758_1761 2 None None None 153948226 Pathogen - hypothetical protein YpsIP31758_2185 1 None None None 153950709 Common adiC arginine/agmatine antiporter YpsIP31758_2782 188 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 153950267 Common frdA fumarate reductase, flavoprotein subunit YpsIP31758_3667 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 153947694 Common - hypothetical protein YpsIP31758_1711 16 None None None 153950552 Pathogen - hypothetical protein YpsIP31758_2159 1 None None None 153947498 Common potH putrescine ABC transporter, permease protein YpsIP31758_2643 207 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 153948144 Common priA primosomal protein n' YpsIP31758_0116 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 153949157 Common - transporter, divalent anion:Na+ symporter (DASS) family YpsIP31758_0706 150 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 153946912 Common glnD protein-P-II uridylyltransferase YpsIP31758_1011 123 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 153948158 Common phnI phosphonate metabolism protein PhnI YpsIP31758_3562 45 COG3626 PhnI, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 153949445 Common shlA hemolysin YpsIP31758_0299 41 None None None 153950786 Common hasR TonB-dependent heme receptor HasR YpsIP31758_0130 44 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 153946844 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_3952 128 COG1609 PurR, Transcriptional regulators Transcription 153946949 Common - quaternary amine uptake ABC transporter (QAT) family, permease protein YpsIP31758_2783 138 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 153948153 Common rhaD rhamnulose-1-phosphate aldolase YpsIP31758_3757 26 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 153947172 Common - cytochrome c family protein YpsIP31758_1032 64 COG2863 COG2863, Cytochrome c553 Energy production and conversion 153947675 Common - putative N-acetylneuraminate lyase YpsIP31758_1293 206 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 153947729 Common - flagellin YpsIP31758_0654 116 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 153948786 Common - Rof protein YpsIP31758_1033 13 COG4568 Rof, Transcriptional antiterminator Transcription 153949406 Pathogen - hypothetical protein YpsIP31758_2204 1 None None None 153948585 Common ccmE cytochrome c-type biogenesis protein CcmE YpsIP31758_1391 94 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 153947975 Common - penicillin-binding protein YpsIP31758_3393 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 153950431 Common rpmF ribosomal protein L32 YpsIP31758_1574 97 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 153947471 Common - Dyp-type peroxidase family protein YpsIP31758_2262 37 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 153950609 Pathogen - hypothetical protein YpsIP31758_1955 1 None None None 153950723 Common - hypothetical protein YpsIP31758_0231 75 COG1738 COG1738, Uncharacterized conserved protein Function unknown 153949461 Common - hypothetical protein YpsIP31758_0619 4 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 153949116 Common - hypothetical protein YpsIP31758_0514 44 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153950466 Common argS arginyl-tRNA synthetase YpsIP31758_2043 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153949403 Pathogen - hypothetical protein YpsIP31758_1653 1 None None None 153948367 Common agaE PTS system, N-acetylgalactosamine-specific IID component YpsIP31758_0938 40 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 153947375 Common idnK thermosensitive gluconokinase YpsIP31758_1469 80 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 153949892 Common - addiction module antitoxin, RelB/DinJ family YpsIP31758_2226 13 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 153947771 Common - hypothetical protein YpsIP31758_2992 10 COG4984 COG4984, Predicted membrane protein Function unknown 153949941 Common cysN sulfate adenylyltransferase, large subunit YpsIP31758_3303 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 153948678 Common - tail tube protein YpsIP31758_2188 27 COG3498 COG3498, Phage tail tube protein FII General function prediction only 153949694 Common nrdI nrdI protein YpsIP31758_1064 36 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 153949397 Common - transporter, major facilitator family YpsIP31758_1871 80 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153947954 Common - NADPH-dependent FMN reductase YpsIP31758_0352 56 COG0431 COG0431, Predicted flavoprotein General function prediction only 153950749 Common leuD 3-isopropylmalate dehydratase, small subunit YpsIP31758_3408 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 153950826 Common kdgM1 oligogalacturonate-specific porin protein KdgM YpsIP31758_4068 12 None None None 153950402 Common recB exodeoxyribonuclease V, beta subunit YpsIP31758_0991 217 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 153950041 Common - AbgT family protein YpsIP31758_0678 38 COG2978 AbgT, Putative p-aminobenzoyl-glutamate transporter Coenzyme metabolism 153947958 Common - hypothetical protein YpsIP31758_2584 9 None None None 153948997 Common - oxidoreductase, zinc-binding dehydrogenase family protein YpsIP31758_1506 212 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 153948424 Common - putative hexuronate transporter YpsIP31758_0926 166 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153949765 Common cdsA2 phosphatidate cytidylyltransferase YpsIP31758_3005 215 COG4589 COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase General function prediction only 153947574 Pathogen - hypothetical protein YpsIP31758_0791 4 None None None 153947038 Common hns DNA-binding protein H-NS YpsIP31758_1966 24 COG2916 Hns, DNA-binding protein H-NS General function prediction only 153950326 Common rbsD cytoplasmic D-ribose-binding protein RbsD YpsIP31758_0007 46 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 153947646 Pathogen - hypothetical protein YpsIP31758_0838 1 None None None 153949979 Common - NAD dependent epimerase/dehydratase family protein YpsIP31758_1432 122 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 153949930 Common - hypothetical protein YpsIP31758_2940 7 COG3566 COG3566, Uncharacterized protein conserved in bacteria Function unknown 153948893 Common epaR type III secretion apparatus protein SpaR/YscT/HrcT YpsIP31758_3812 122 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 153950075 Common - transporter, major facilitator family YpsIP31758_2142 85 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153949645 Common - PAP2 family protein YpsIP31758_2651 32 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 153947015 Common mdtA multidrug resistance protein MdtA YpsIP31758_1215 171 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153947223 Pathogen - hypothetical protein YpsIP31758_2178 1 None None None 153950816 Common - putative chaperone protein YpsIP31758_1223 174 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 153949617 Common hutF formiminoglutamate deiminase YpsIP31758_2111 127 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 153949333 Pathogen - putative enterobacterial membrane protein YpsIP31758_0159 6 None None None 153947856 Common - HNH endonuclease domain protein YpsIP31758_2803 26 None None None 153948555 Common nqrC NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YpsIP31758_3164 47 COG2869 NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC Energy production and conversion 153946992 Common ileS isoleucyl-tRNA synthetase YpsIP31758_3460 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153947659 Common - hypothetical protein YpsIP31758_1948 34 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 153946936 Common pstS phosphate ABC transporter, phosphate-binding protein PstS YpsIP31758_4171 129 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 153948884 Common rplU ribosomal protein L21 YpsIP31758_3612 215 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 153948990 Common btuC vitamin B12 import system permease protein BtuC YpsIP31758_1720 191 COG4139 BtuC, ABC-type cobalamin transport system, permease component Coenzyme metabolism 153949627 Common dadA D-amino acid dehydrogenase, small subunit YpsIP31758_1997 140 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 153950601 Common rpoC DNA-directed RNA polymerase, beta' subunit YpsIP31758_3859 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 153948796 Pathogen - hypothetical protein YpsIP31758_0568 1 None None None 153949079 Common - putative phage minor structural protein YpsIP31758_0824 16 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 153949935 Pathogen - putative transposase, truncation YpsIP31758_0124 1 None None None 153947165 Common - putative anti-anti-sigma factor YpsIP31758_0452 18 COG3113 COG3113, Predicted NTP binding protein (contains STAS domain) General function prediction only 153950097 Common ppsA phosphoenolpyruvate synthase YpsIP31758_1737 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 153948053 Common - DedA protein YpsIP31758_1421 171 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 153950259 Common fadH 2,4-dienoyl-coa reductase YpsIP31758_0501 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 153950383 Common - putative ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_2689 89 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153948415 Common flgK1 flagellar hook-associated protein FlgK YpsIP31758_2314 125 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 153949392 Common - putative transmembrane protein YpsIP31758_1331 41 COG4125 COG4125, Predicted membrane protein Function unknown 153948596 Common - hypothetical protein YpsIP31758_0521 24 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153949298 Common nqrE2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YpsIP31758_3162 76 COG2209 NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE Energy production and conversion 153949151 Common - addiction module toxin, RelE/StbE family YpsIP31758_2227 30 COG2026 RelE, Cytotoxic translational repressor of toxin-antitoxin stability system Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning 153949314 Common aceF pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YpsIP31758_3362 197 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 153950894 Common malS alpha-amylase YpsIP31758_4138 153 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 153947595 Common - hypothetical protein YpsIP31758_0444 26 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 153950090 Common def peptide deformylase YpsIP31758_3882 212 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 153948989 Common - hypothetical protein YpsIP31758_2613 21 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 153949228 Pathogen - hypothetical protein YpsIP31758_2647 5 None None None 153949482 Common - iron chelate ABC transporter (FeCT) family, periplasmic iron/siderophore-binding protein YpsIP31758_2635 70 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 153949105 Common trmD tRNA (guanine-N1)-methyltransferase YpsIP31758_3226 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 153948160 Common - PIN domain protein YpsIP31758_3737 36 COG3744 COG3744, Uncharacterized protein conserved in bacteria Function unknown 153948765 Common - hypothetical protein YpsIP31758_0050 2 None None None 153950714 Common - DNA-binding protein YpsIP31758_0337 23 COG1396 HipB, Predicted transcriptional regulators Transcription 153949067 Pathogen - hypothetical protein YpsIP31758_4014 1 None None None 153950493 Common dapA dihydrodipicolinate synthase YpsIP31758_1247 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 153948775 Common - hypothetical protein YpsIP31758_2446 43 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 153946817 Common - hypothetical protein YpsIP31758_1623 7 None None None 153947286 Common - type IVB pilus formation outer membrane protein, R64 PilN family YpsIP31758_3734 48 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 153947078 Common comEC DNA internalization-related competence protein ComEC/Rec2 YpsIP31758_2578 143 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 153948551 Common - hydrolase, carbon-nitrogen family YpsIP31758_3184 175 COG0388 COG0388, Predicted amidohydrolase General function prediction only 153946959 Pathogen - hypothetical protein YpsIP31758_2242 1 None None None 153948468 Common flgN flagella synthesis protein FlgN YpsIP31758_2328 13 COG3418 COG3418, Flagellar biosynthesis/type III secretory pathway chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 153949866 Common - carbohydrate uptake ABC transporter-1 (CUT1) family, permease protein YpsIP31758_3574 152 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153950435 Common - ABC transporter, permease protein YpsIP31758_2137 99 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 153948429 Common - AP endonuclease, family 2 YpsIP31758_2745 75 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 153948485 Common yntE nickel ABC transporter, ATP-binding protein YpsIP31758_1075 248 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 153949508 Common mppA murein tripeptide ABC transporter, periplasmic murein peptide-binding protein YpsIP31758_1798 200 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 153950360 Common - DJ-1/PfpI family protein YpsIP31758_0928 96 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 153949239 Common - putative oxidoreductase, FAD-binding YpsIP31758_3776 20 COG3979 COG3979, Uncharacterized protein contain chitin-binding domain type 3 General function prediction only 153949480 Common - antibiotic biosynthesis monooxygenase domain protein YpsIP31758_3526 26 COG1359 COG1359, Uncharacterized conserved protein Function unknown 153948290 Common rplD ribosomal protein L4 YpsIP31758_3914 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 153947807 Common gapA glyceraldehyde-3-phosphate dehydrogenase, type I YpsIP31758_1987 219 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 153947524 Common astB succinylarginine dihydrolase YpsIP31758_2118 34 COG3724 AstB, Succinylarginine dihydrolase Amino acid transport and metabolism 153948311 Common ureA urease, gamma subunit YpsIP31758_1077 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 153947248 Common ptsN nitrogen regulatory IIA protein YpsIP31758_0439 133 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 153947161 Common - ABC transporter, permease/ATP-binding protein YpsIP31758_0690 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 153949658 Common gspD general secretion pathway protein D YpsIP31758_0953 142 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 153950389 Common - eIF-2B alpha/beta/delta family protein YpsIP31758_3179 132 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 153949494 Common iucC aerobactin siderophore biosynthesis protein IucC YpsIP31758_0712 50 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 153950207 Common - von Willebrand factor type A domain protein YpsIP31758_1306 64 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 153947536 Common - transcriptional regulator, lacI family YpsIP31758_1526 123 COG1609 PurR, Transcriptional regulators Transcription 153950725 Common - hypothetical protein YpsIP31758_4125 13 None None None 153947476 Common - metallo-beta-lactamase family protein YpsIP31758_1052 196 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 153950459 Common rstA transcriptional regulatory protein RstA YpsIP31758_1826 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153948448 Common - hypothetical protein YpsIP31758_3821 5 None None None 153948476 Common nuoM NADH-quinone oxidoreductase, M subunit YpsIP31758_1465 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 153948285 Common cueR Cu(I)-responsive transcriptional regulator YpsIP31758_3026 135 COG0789 SoxR, Predicted transcriptional regulators Transcription 153950670 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, permease protein YpsIP31758_3267 107 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153948461 Common - hypothetical protein YpsIP31758_0807 55 COG3972 COG3972, Superfamily I DNA and RNA helicases General function prediction only 153950026 Common - polysaccharide deacetylase family protein YpsIP31758_1058 62 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 153950505 Common ptsG PTS system, glucose-specific IIBC component YpsIP31758_1586 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 153947059 Common flgF2 flagellar basal-body rod protein FlgF YpsIP31758_2320 123 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 153947307 Common metB cystathionine gamma-synthase YpsIP31758_0121 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 153949955 Common gyrA DNA gyrase, A subunit YpsIP31758_2767 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 153950083 Common aroH phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive YpsIP31758_1735 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 153950507 Common yntB nickel ABC transporter, permease protein YpsIP31758_1072 215 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153948453 Common - transcriptional regulator, CopG family YpsIP31758_2899 21 None None None 153948734 Common thiK thiamine kinase YpsIP31758_1591 18 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 153947070 Common - hypothetical protein YpsIP31758_0755 2 None None None 153948961 Common - hypothetical protein YpsIP31758_3431 31 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 153950868 Common - hypothetical protein YpsIP31758_1378 11 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 153947202 Common - type I secretion membrane fusion protein, HlyD family protein YpsIP31758_1890 121 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153946953 Common - Mandelate racemase/muconate lactonizing enzyme family protein YpsIP31758_1796 113 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 153948593 Common - cytochrome c family protein YpsIP31758_2134 7 COG2863 COG2863, Cytochrome c553 Energy production and conversion 153947291 Common glmU UDP-N-acetylglucosamine pyrophosphorylase YpsIP31758_4174 234 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 153948315 Common - hypothetical protein YpsIP31758_1907 24 COG2879 COG2879, Uncharacterized small protein Function unknown 153949256 Common coaD pantetheine-phosphate adenylyltransferase YpsIP31758_0065 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 153949889 Common ssb single-strand binding protein YpsIP31758_3760 213 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 153948665 Common acsA acetate--CoA ligase YpsIP31758_3835 216 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 153950314 Pathogen - hypothetical protein YpsIP31758_3589 1 None None None 153949420 Common - HAD hydrolase, IA family YpsIP31758_1837 105 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 153948419 Common fliH2 flagellar assembly protein FliH YpsIP31758_2292 38 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 153947622 Common - hydrolase, TatD family YpsIP31758_1585 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 153949291 Common aroB 3-dehydroquinate synthase YpsIP31758_3965 205 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 153950145 Common - radical SAM domain protein YpsIP31758_0585 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 153947889 Common - iron-sulfur cluster assembly accessory protein YpsIP31758_3328 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 153948059 Common - hypothetical protein YpsIP31758_4043 7 None None None 153949146 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_0922 126 COG1609 PurR, Transcriptional regulators Transcription 153949135 Common cydC ABC transporter, permease/ATP-binding protein CydC YpsIP31758_2601 249 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 153948098 Common prfB peptide chain release factor 2 YpsIP31758_0882 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 153948283 Common - hypothetical protein YpsIP31758_0589 70 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 153947908 Common infA translation initiation factor IF-1 YpsIP31758_2604 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 153949308 Common - hypothetical protein YpsIP31758_1109 11 None None None 153949908 Common sfsA sugar fermentation stimulation protein YpsIP31758_3337 106 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 153947585 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase YpsIP31758_0582 84 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 153949093 Common dinG ATP-dependent helicase dinG YpsIP31758_2777 125 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 153950481 Common - cold shock DNA-binding domain protein YpsIP31758_0375 179 COG1278 CspC, Cold shock proteins Transcription 153948746 Common - IS1541, transposase YpsIP31758_0496 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153946969 Common sodA superoxide dismutase (Mn) YpsIP31758_4121 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 153947341 Common hofQ protein transporter HofQ YpsIP31758_3967 139 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 153947967 Common malP maltodextrin phosphorylase YpsIP31758_3993 144 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 153950787 Common hslV ATP-dependent protease HslV YpsIP31758_0113 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 153949065 Common pyrI aspartate carbamoyltransferase, regulatory subunit YpsIP31758_0435 64 COG1781 PyrI, Aspartate carbamoyltransferase, regulatory subunit Nucleotide transport and metabolism 153949427 Common - hypothetical protein YpsIP31758_2491 9 COG4104 COG4104, Uncharacterized conserved protein Function unknown 153948354 Common glyA serine hydroxymethyltransferase YpsIP31758_1158 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 153950738 Pathogen - hypothetical protein YpsIP31758_0584 1 None None None 153950643 Common rseP RIP metalloprotease RseP YpsIP31758_1020 215 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 153950831 Common - putative insecticial toxin complex protein YpsIP31758_0409 49 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153949830 Common - pilus assembly chaperone YpsIP31758_1664 26 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153947179 Common bioD1 dethiobiotin synthase YpsIP31758_1868 149 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 153948827 Common - hypothetical protein YpsIP31758_2789 6 None None None 153950519 Common - putative lipoprotein YpsIP31758_1339 22 COG4380 COG4380, Uncharacterized protein conserved in bacteria Function unknown 153948839 Common - putative helicase YpsIP31758_3687 25 None None None 153948436 Common coaE dephospho-CoA kinase YpsIP31758_3374 204 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 153950711 Common - NAD(P)H-flavin reductase YpsIP31758_0281 98 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 153950442 Common - peptidase, M48 family YpsIP31758_0845 69 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 153950689 Common - flagellin YpsIP31758_2281 110 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 153948728 Common - putative ABC transporter, periplasmic iron siderophore/cobalamin-binding protein YpsIP31758_2669 90 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 153947626 Pathogen - putative lipoprotein YpsIP31758_1911 1 None None None 153949489 Common - PTS system, glucose-specific EIIA component YpsIP31758_1315 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 153947051 Common motA2 chemotaxis protein MotA YpsIP31758_0661 88 COG1291 MotA, Flagellar motor component Cell motility and secretion 153949412 Common dnaX DNA polymerase III, subunits gamma and tau YpsIP31758_3059 245 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 153947413 Common tauD alpha-ketoglutarate-dependent taurine dioxygenase YpsIP31758_3935 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 153948184 Common - hypothetical protein YpsIP31758_3836 52 COG3162 COG3162, Predicted membrane protein Function unknown 153949668 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_1545 158 COG0583 LysR, Transcriptional regulator Transcription 153950510 Common emrB multidrug resistance protein B YpsIP31758_3202 203 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948830 Pathogen - hypothetical protein YpsIP31758_2335 5 None None None 153950422 Common - syd protein YpsIP31758_1005 20 None None None 153949881 Common aceE pyruvate dehydrogenase, E1 component YpsIP31758_3363 135 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 153947119 Common pntB NAD(P) transhydrogenase, beta subunit YpsIP31758_1831 124 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 153947884 Common - aminotransferase, classes I and II YpsIP31758_1857 226 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 153947377 Common nadD nicotinate (nicotinamide) nucleotide adenylyltransferase YpsIP31758_2929 181 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 153950232 Common - thioesterase family protein YpsIP31758_0216 54 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 153949731 Common rapA RNA polymerase-associated protein RapA YpsIP31758_3419 134 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 153949738 Common serA phosphoglycerate dehydrogenase YpsIP31758_0856 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 153947681 Pathogen - hypothetical protein YpsIP31758_0895 1 None None None 153949296 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_3808 155 COG0583 LysR, Transcriptional regulator Transcription 153949759 Common fliT flagellar protein FliT YpsIP31758_2285 12 None None None 153950301 Common tatA1 twin arginine-targeting protein translocase TatA YpsIP31758_0274 23 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 153947936 Common dcd deoxycytidine triphosphate deaminase YpsIP31758_2452 160 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 153948913 Common rpoZ DNA-directed RNA polymerase, omega subunit YpsIP31758_0040 110 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 153948684 Common fbpB iron(III) ABC transporter, permease protein YpsIP31758_1349 177 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 153949277 Common dam DNA adenine methylase YpsIP31758_3963 85 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 153947320 Pathogen - hypothetical protein YpsIP31758_3365 1 None None None 153949021 Common - ROK family protein YpsIP31758_2054 130 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 153948931 Common - putative shikimate 5-dehydrogenase YpsIP31758_1587 209 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 153948175 Common - repressor protein C2 YpsIP31758_2248 33 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 153948026 Common - hypothetical protein YpsIP31758_0541 48 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 153948943 Common parC DNA topoisomerase IV, A subunit YpsIP31758_0581 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 153947561 Common - aerobic formate dehydrogenase accessory protein YpsIP31758_4120 136 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 153948793 Common rluC ribosomal large subunit pseudouridine synthase C YpsIP31758_1570 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 153947211 Pathogen - hypothetical protein YpsIP31758_2744 2 None None None 153948516 Common - Ornithine cyclodeaminase/mu-crystallin family YpsIP31758_4147 91 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 153947746 Common - phospholipase/carboxylesterase family protein YpsIP31758_3640 40 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 153950246 Common - ribosomal protein L31P family YpsIP31758_3069 98 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 153950929 Pathogen - hypothetical protein YpsIP31758_1199 3 None None None 153948807 Common iciA chromosome initiation inhibitor YpsIP31758_0854 72 COG0583 LysR, Transcriptional regulator Transcription 153949329 Pathogen - hypothetical protein YpsIP31758_1503 1 None None None 153949787 Common - SPFH/band 7 family protein YpsIP31758_2636 86 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 153948217 Common - hypothetical protein YpsIP31758_2982 9 None None None 153947711 Common grxC glutaredoxin 3 YpsIP31758_0077 127 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 153949473 Common - transcriptional regulator, AsnC family YpsIP31758_3081 152 COG1522 Lrp, Transcriptional regulators Transcription 153947042 Common ychF GTP-binding protein YchF YpsIP31758_2075 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 153947431 Common - putative succinate-semialdehyde dehydrogenase (NADP+) YpsIP31758_2692 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153947842 Common - Putative phospholipid-binding domain protein YpsIP31758_1939 48 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 153949220 Common dnaG DNA primase YpsIP31758_0554 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 153950776 Common - hypothetical protein YpsIP31758_1202 7 None None None 153949201 Common - carbon starvation protein CstA YpsIP31758_1905 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 153948702 Common - type I restriction-modification system, M subunit YpsIP31758_3536 160 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 153949854 Common - MOSC/iron-sulfur cluster binding domain protein YpsIP31758_2553 53 COG3217 COG3217, Uncharacterized Fe-S protein General function prediction only 153947862 Common - iron-sulfur cluster-binding protein YpsIP31758_3683 143 COG1142 HycB, Fe-S-cluster-containing hydrogenase components 2 Energy production and conversion 153949950 Common - carbohydrate uptake (CUT1 family) ABC transporter, ATP-binding protein YpsIP31758_2169 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153950694 Pathogen - hypothetical protein YpsIP31758_1544 1 None None None 153949512 Common - bacteriophage Mu P protein YpsIP31758_2736 20 COG4379 COG4379, Mu-like prophage tail protein gpP General function prediction only 153947710 Common - barstar YpsIP31758_0424 11 COG2732 COG2732, Barstar, RNAse (barnase) inhibitor Transcription 153950035 Common - hypothetical protein YpsIP31758_2837 87 COG0391 COG0391, Uncharacterized conserved protein Function unknown 153947316 Common - Ail/Lom family protein YpsIP31758_1951 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 153947912 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, periplasmic carbohydrate-binding protein YpsIP31758_2309 77 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949393 Common - putative NADH-quinone reductase mdaB YpsIP31758_0580 51 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 153950200 Common acrD acriflavine resistance protein D YpsIP31758_1268 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153947064 Pathogen - type III secretion system protein, YseE family YpsIP31758_3828 1 None None None 153947489 Common - putative sugar-binding domain protein YpsIP31758_2312 70 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 153949466 Common - TonB-dependent receptor YpsIP31758_0681 120 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 153948900 Common - putative chorismate mutase YpsIP31758_2624 10 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 153947509 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 YpsIP31758_1446 171 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 153948601 Common - integral membrane protein, PqiA family YpsIP31758_1669 54 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 153949384 Common - radical SAM domain/HemN domain protein YpsIP31758_3797 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 153950303 Common ccmA heme ABC exporter, ATP-binding protein CcmA YpsIP31758_1387 249 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 153948303 Common - ribonuclease Ba YpsIP31758_0423 10 COG4290 COG4290, Guanyl-specific ribonuclease Sa Nucleotide transport and metabolism 153947397 Pathogen - hypothetical protein YpsIP31758_2146 1 None None None 153948508 Common - putative sanA protein YpsIP31758_2464 40 COG2949 SanA, Uncharacterized membrane protein Function unknown 153950750 Common - aspartate-semialdehyde dehydrogenase family protein YpsIP31758_1419 202 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 153947813 Common ndk nucleoside diphosphate kinase YpsIP31758_1182 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 153949343 Common - transcriptional regulator, LuxR family YpsIP31758_1353 5 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153947960 Common - putative polyketide cyclase/dehydrase YpsIP31758_2892 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 153949932 Common - acetyltransferase, GNAT family YpsIP31758_1281 70 COG0456 RimI, Acetyltransferases General function prediction only 153948062 Common - hypothetical protein YpsIP31758_2650 23 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 153948295 Common araA L-arabinose isomerase YpsIP31758_1887 37 COG2160 AraA, L-arabinose isomerase Carbohydrate transport and metabolism 153947067 Common - acetyltransferase, GNAT family YpsIP31758_1499 36 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 153948100 Common sdhC succinate dehydrogenase, cytochrome b556 subunit YpsIP31758_2885 93 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 153948422 Common - hypothetical protein YpsIP31758_0312 30 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153947750 Common - putative autotransporter protein YpsIP31758_1288 25 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153948509 Common - kinase, pfkB family YpsIP31758_4025 66 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 153950001 Pathogen - hypothetical protein YpsIP31758_3456 1 None None None 153947084 Common tusA sulfurtransferase TusA YpsIP31758_0232 104 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 153949987 Pathogen - hypothetical protein YpsIP31758_2296 1 None None None 153949596 Common pilR type IV pilus biogenesis protein PilR YpsIP31758_3730 11 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 153950128 Common - transcriptional regulator, RpiR family YpsIP31758_1142 86 COG1737 RpiR, Transcriptional regulators Transcription 153948070 Common - hydrolase, NUDIX family domain protein YpsIP31758_2686 97 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 153950114 Common - hypothetical protein YpsIP31758_3798 18 COG3721 HugX, Putative heme iron utilization protein Inorganic ion transport and metabolism 153949583 Pathogen - hypothetical protein YpsIP31758_2091 2 None None None 153948251 Common ubiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase YpsIP31758_0861 131 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 153947926 Common - P-loop ATPase protein family YpsIP31758_0438 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 153948652 Pathogen - hypothetical protein YpsIP31758_1965 1 None None None 153947194 Common - hypothetical protein YpsIP31758_0316 47 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 153948210 Common - phosphocarrier protein, HPr family YpsIP31758_0437 131 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 153949917 Common mreC rod shape-determining protein MreC YpsIP31758_0399 154 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 153948504 Common - transcriptional regulator, NmrA family YpsIP31758_1619 103 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153948136 Pathogen - hypothetical protein YpsIP31758_1069 3 None None None 153950312 Common fliP2 flagellar biosynthetic protein FliP YpsIP31758_2302 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 153950838 Common prlC oligopeptidase A YpsIP31758_4047 125 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 153950872 Common pspA phage shock protein A YpsIP31758_1786 88 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 153947144 Common - crispr-associated helicase Cas3, yersinia-type YpsIP31758_1536 19 COG1203 COG1203, Predicted helicases General function prediction only 153949209 Common - hypothetical protein YpsIP31758_2514 5 None None None 153947952 Pathogen - hypothetical protein YpsIP31758_1243 4 None None None 153950350 Pathogen - hypothetical protein YpsIP31758_1110 1 None None None 153950255 Common - Fic family protein YpsIP31758_0896 100 COG3177 COG3177, Uncharacterized conserved protein Function unknown 153948169 Common thiH thiazole biosynthesis protein ThiH YpsIP31758_3857 56 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 153946866 Common prfC peptide chain release factor 3 YpsIP31758_3504 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 153948084 Common - hypothetical protein YpsIP31758_3142 52 COG3123 COG3123, Uncharacterized protein conserved in bacteria Function unknown 153948568 Common holD DNA polymerase III, psi subunit YpsIP31758_3506 20 COG3050 HolD, DNA polymerase III, psi subunit DNA replication, recombination, and repair 153949368 Common hmp flavohemoprotein YpsIP31758_1157 131 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 153946979 Common - adhesin/haemagluttinin repeat protein YpsIP31758_2044 33 None None None 153950863 Common dnaJ chaperone protein DnaJ YpsIP31758_3465 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 153947500 Common trpA tryptophan synthase, alpha subunit YpsIP31758_1937 212 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 153949073 Common dusA tRNA-dihydrouridine synthase A YpsIP31758_3768 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 153946970 Common - putative uroporphyrinogen III methylase YpsIP31758_0196 55 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 153948208 Pathogen - hypothetical protein YpsIP31758_1383 1 None None None 153949128 Common - DNA-binding response regulator ArcA YpsIP31758_3478 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153948890 Common birA birA bifunctional protein YpsIP31758_3871 223 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 153949981 Common - cytoplasmic chaperone, TorD family YpsIP31758_2052 20 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 153947605 Common - hydrolase, Cof family YpsIP31758_2847 126 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 153950319 Common - phage uncharacterized protein YpsIP31758_2225 22 COG5410 COG5410, Uncharacterized protein conserved in bacteria Function unknown 153949603 Common - thiamine pyrophosphate-dependent enzyme YpsIP31758_2976 221 COG3962 COG3962, Acetolactate synthase Amino acid transport and metabolism 153948107 Common - hypothetical protein YpsIP31758_0867 11 None None None 153947496 Common - phosphoribosylglycinamide synthetase family protein YpsIP31758_4090 30 COG0439 AccC, Biotin carboxylase Lipid metabolism 153950293 Common pstA2 phosphate ABC transporter, permease protein PstA YpsIP31758_1229 220 COG4985 COG4985, ABC-type phosphate transport system, auxiliary component Inorganic ion transport and metabolism 153949305 Common - transporter, AcrB/AcrD/AcrF family YpsIP31758_3512 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153948224 Common menE O-succinylbenzoate-CoA ligase YpsIP31758_1486 206 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153949232 Common hemL glutamate-1-semialdehyde-2,1-aminomutase YpsIP31758_3330 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 153948392 Common togB oligogalacturonide ABC transporter, periplasmic oligogalacturonide-binding protein YpsIP31758_1688 72 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949804 Pathogen - hypothetical protein YpsIP31758_1698 1 None None None 153950703 Common xylB xylulokinase YpsIP31758_4103 185 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 153947568 Common amn AMP nucleosidase YpsIP31758_1846 54 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 153949455 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YpsIP31758_2251 197 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 153949000 Common - putative permease YpsIP31758_3541 108 COG0795 COG0795, Predicted permeases General function prediction only 153949909 Pathogen - hypothetical protein YpsIP31758_3539 1 None None None 153946926 Pathogen - hypothetical protein YpsIP31758_2234 2 None None None 153946942 Common pncB nicotinate phosphoribosyltransferase YpsIP31758_2557 75 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 153949361 Common - hybrid peroxiredoxin hyPrx5 YpsIP31758_0136 118 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 153947016 Common - ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein YpsIP31758_2668 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 153948609 Common - pyridoxal-phosphate dependent protein YpsIP31758_4087 222 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 153949639 Common dkgB 2,5-diketo-D-gluconic acid reductase B YpsIP31758_1048 173 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 153950744 Common - transcriptional regulator, MerR family YpsIP31758_1800 10 COG0789 SoxR, Predicted transcriptional regulators Transcription 153947987 Common glgB 1,4-alpha-glucan branching enzyme YpsIP31758_4006 147 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 153949365 Common chbC PTS system, cellobiose-specific IIC component YpsIP31758_1092 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 153947787 Common - hypothetical protein YpsIP31758_1954 18 COG3099 COG3099, Uncharacterized protein conserved in bacteria Function unknown 153948800 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2093 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 153948046 Common mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase YpsIP31758_3620 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 153947757 Common - putative YraP protein YpsIP31758_0472 65 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 153946878 Common - putative GTPase YpsIP31758_0759 65 COG3596 COG3596, Predicted GTPase General function prediction only 153946983 Common - bacterial Ig-like domain (group 2) protein YpsIP31758_2930 7 None None None 153950764 Common proB glutamate 5-kinase YpsIP31758_3150 189 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 153948246 Common - cold shock DNA-binding domain protein YpsIP31758_2574 164 COG1278 CspC, Cold shock proteins Transcription 153948982 Common nuoH NADH-quinone oxidoreductase, H subunit YpsIP31758_1460 185 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 153946858 Pathogen - hypothetical protein YpsIP31758_0511 1 None None None 153948576 Common dnaB1 replicative DNA helicase YpsIP31758_3765 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 153947149 Pathogen - hypothetical protein YpsIP31758_1097 1 None None None 153950065 Common - putative LppC lipoprotein YpsIP31758_0475 41 COG3107 LppC, Putative lipoprotein General function prediction only 153946922 Pathogen wzy O-antigen biosynthesis protein Wxy YpsIP31758_3043 2 None None None 153948886 Common araF L-arabinose ABC transporter, periplasmic L-arabinose-binding protein YpsIP31758_1885 30 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153948951 Common rpmE ribosomal protein L31 YpsIP31758_0118 167 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 153948236 Common - DNA repair protein, RadC family YpsIP31758_0750 178 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 153947101 Common - haemagglutinin repeat protein YpsIP31758_1650 57 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 153950805 Common - RNA pseudouridine synthase family protein YpsIP31758_2990 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 153948079 Common - YD/RHS repeat protein YpsIP31758_0698 66 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153947767 Common - putative acyltransferase YpsIP31758_4108 31 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 153950199 Common - putative thiamine biosynthesis lipoprotein apbE YpsIP31758_3160 140 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 153948122 Pathogen - hypothetical protein YpsIP31758_2615 1 None None None 153947965 Pathogen - hypothetical protein YpsIP31758_2126 1 None None None 153950063 Common metA homoserine O-succinyltransferase YpsIP31758_0292 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 153947822 Pathogen - hypothetical protein YpsIP31758_0908 1 None None None 153946852 Common - peptidase, M48 family YpsIP31758_1674 190 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 153948067 Common chbA PTS system, cellobiose specific IIA subunit YpsIP31758_1093 32 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 153950170 Common - IS1, transposase orfA YpsIP31758_0724 11 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949210 Common ftsK DNA translocase FtsK YpsIP31758_2596 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 153950794 Pathogen - hypothetical protein YpsIP31758_3779 1 None None None 153948722 Common - type III secretion apparatus lipoprotein, YscJ/HrcJ family YpsIP31758_3822 28 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 153950139 Common - hypothetical protein YpsIP31758_1659 34 COG4405 COG4405, Uncharacterized protein conserved in bacteria Function unknown 153948657 Common pflB formate acetyltransferase YpsIP31758_2589 58 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 153947460 Common lon ATP-dependent protease La YpsIP31758_3090 215 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 153950449 Common rplA ribosomal protein L1 YpsIP31758_3863 244 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 153948138 Common pspC phage shock protein C YpsIP31758_1788 29 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 153948480 Common - putative lipoprotein YpsIP31758_1810 26 None None None 153948299 Common moaA molybdenum cofactor biosynthesis protein A YpsIP31758_2836 198 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 153947614 Common gshA glutamate--cysteine ligase YpsIP31758_3234 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 153947225 Common hisF imidazoleglycerol phosphate synthase, cyclase subunit YpsIP31758_2434 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 153946985 Common nuoL NADH-quinone oxidoreductase, L subunit YpsIP31758_1464 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 153949471 Common fcuA ferrichrome receptor FcuA YpsIP31758_2373 83 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 153948110 Common - cytoplasmic chaperone, TorD family YpsIP31758_1341 21 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 153947001 Common - DNA replication and repair protein recF YpsIP31758_4151 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 153947030 Common pdxB erythronate-4-phosphate dehydrogenase YpsIP31758_1418 230 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 153949721 Pathogen - hypothetical protein YpsIP31758_2379 1 None None None 153948497 Common - hypothetical protein YpsIP31758_2348 16 COG3097 COG3097, Uncharacterized protein conserved in bacteria Function unknown 153950397 Common gspE general secretory pathway protein E YpsIP31758_0954 221 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 153950322 Pathogen - hypothetical protein YpsIP31758_2963 2 None None None 153949505 Common - beta-ketoacyl synthase family protein YpsIP31758_2547 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153950262 Common - putative myo-inositol catabolism protein IolB YpsIP31758_2967 52 COG3718 IolB, Uncharacterized enzyme involved in inositol metabolism Carbohydrate transport and metabolism 153950168 Common - hypothetical protein YpsIP31758_0552 3 None None None 153950880 Common hemA glutamyl-tRNA reductase YpsIP31758_2067 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 153949195 Common - putative VgrG protein YpsIP31758_0339 58 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153950918 Common - putative permease PerM YpsIP31758_1240 188 COG0628 PerM, Predicted permease General function prediction only 153948253 Pathogen - hypothetical protein YpsIP31758_0335 2 None None None 153947917 Common ubiA 4-hydroxybenzoate polyprenyl transferase YpsIP31758_3773 175 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 153947466 Common gspI general secretion pathway protein I YpsIP31758_0957 17 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 153948511 Common atpD ATP synthase F1, beta subunit YpsIP31758_4176 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 153950329 Common lysR transcriptional activator protein LysR YpsIP31758_0970 179 COG0583 LysR, Transcriptional regulator Transcription 153949055 Common - putatitve ABC transporter, ATP-binding protein YpsIP31758_3020 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 153950617 Common - putative ribokinase YpsIP31758_0349 199 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 153948866 Common - transcriptional regulator, TetR family YpsIP31758_3685 25 COG1309 AcrR, Transcriptional regulator Transcription 153947180 Common ppiC peptidyl-prolyl cis-trans isomerase C YpsIP31758_0173 146 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 153950024 Common tyrA T-protein YpsIP31758_3219 84 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 153949695 Common aspA aspartate ammonia-lyase YpsIP31758_3678 232 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 153949438 Common mdtK multidrug resistance protein MdtK YpsIP31758_1750 175 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 153950269 Common secY preprotein translocase, SecY subunit YpsIP31758_3894 225 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 153950152 Common - hypothetical protein YpsIP31758_0808 85 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 153950635 Pathogen - hypothetical protein YpsIP31758_1710 1 None None None 153950332 Common - transporter, major facilitator family YpsIP31758_0715 42 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153949431 Common - DsrE family protein YpsIP31758_3065 24 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 153946834 Common phoB phosphate regulon transcriptional regulatory protein PhoB YpsIP31758_3136 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153948016 Common apaG apaG protein YpsIP31758_3445 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 153947890 Common kdpB K+-transporting ATPase, B subunit YpsIP31758_1106 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 153950099 Common - transporter, major facilitator family YpsIP31758_0382 136 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 153950186 Common - hypothetical protein YpsIP31758_0753 3 None None None 153950355 Common - hypothetical protein YpsIP31758_4027 18 COG3822 COG3822, ABC-type sugar transport system, auxiliary component General function prediction only 153948704 Common - hydrolase, NUDIX family YpsIP31758_3851 105 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 153948377 Common - hypothetical protein YpsIP31758_1373 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 153950663 Common rpmA ribosomal protein L27 YpsIP31758_3611 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 153950746 Common - hypothetical protein YpsIP31758_3358 22 COG3112 COG3112, Uncharacterized protein conserved in bacteria Function unknown 153947401 Common sapA peptide ABC transporter, periplasmic peptide-binding protein YpsIP31758_1784 204 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 153950103 Pathogen - hypothetical protein YpsIP31758_0045 1 None None None 153948929 Common - mandelate racemase/muconate lactonizing enzyme family protein YpsIP31758_2410 104 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 153950542 Common - hypothetical protein YpsIP31758_2562 63 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 153947479 Pathogen - hypothetical protein YpsIP31758_0569 1 None None None 153948936 Common grcA autonomous glycyl radical cofactor YpsIP31758_1122 51 COG3445 COG3445, Acid-induced glycyl radical enzyme General function prediction only 153947673 Common emrA multidrug resistance protein A YpsIP31758_3201 156 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153949015 Common - oxidoreductase, aldo/keto reductase family YpsIP31758_2999 199 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 153948878 Common kdpE KDP operon transcriptional regulatory protein KdpE YpsIP31758_1102 205 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153947932 Pathogen - hypothetical protein YpsIP31758_2802 1 None None None 153947090 Common - hypothetical protein YpsIP31758_1346 19 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153947006 Common - hemerythrin HHE cation binding domain protein YpsIP31758_3632 44 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 153950471 Common - glycosyl hydrolase, family 53 YpsIP31758_0917 21 COG3867 COG3867, Arabinogalactan endo-1,4-beta-galactosidase Carbohydrate transport and metabolism 153948672 Common mdtJ multidrug resistance protein MdtJ YpsIP31758_2020 108 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 153946827 Common - F5/8 type C domain protein YpsIP31758_4065 9 None None None 153948183 Common gdhA NADP-specific glutamate dehydrogenase YpsIP31758_4036 173 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 153949714 Common purB adenylosuccinate lyase YpsIP31758_1610 229 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 153950478 Common - PrkA serine protein kinase YpsIP31758_1991 70 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 153949585 Common rpsG ribosomal protein S7 YpsIP31758_3920 236 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 153949816 Common ntrB nitrogen regulation protein NR(II) YpsIP31758_0026 213 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 153950561 Common iclR acetate operon repressor YpsIP31758_0297 123 COG1414 IclR, Transcriptional regulator Transcription 153949681 Common - hypothetical protein YpsIP31758_1035 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 153950584 Common atpI ATP synthase F0, I subunit YpsIP31758_4183 13 COG3312 AtpI, F0F1-type ATP synthase, subunit I Energy production and conversion 153950003 Common ubiB 2-polyprenylphenol 6-hydroxylase YpsIP31758_0273 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 153950017 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_1870 182 COG0583 LysR, Transcriptional regulator Transcription 153949175 Pathogen - hypothetical protein YpsIP31758_0725 1 None None None 153950132 Common - methyltransferase family protein YpsIP31758_1127 105 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 153950537 Common - hypothetical protein YpsIP31758_1876 12 None None None 153947139 Pathogen - hypothetical protein YpsIP31758_1854 2 None None None 153950161 Pathogen - hypothetical protein YpsIP31758_2345 1 None None None 153948201 Common - transporter, monovalent cation:proton antiporter-2 (CPA2) family YpsIP31758_1549 109 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 153949168 Common - hypothetical protein YpsIP31758_1893 9 None None None 153949187 Common trmE tRNA modification GTPase TrmE YpsIP31758_4158 230 COG0486 ThdF, Predicted GTPase General function prediction only 153947187 Common - ImpA domain protein YpsIP31758_2492 18 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153946976 Pathogen - hypothetical protein YpsIP31758_1451 1 None None None 153950339 Common - putative spermidine/putrescine ABC transporter, permease protein YpsIP31758_2058 215 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 153948564 Common uxaA altronate dehydratase YpsIP31758_0493 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 153948030 Common ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YpsIP31758_2069 186 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 153947502 Common - site-specific recombinase, phage integrase family, truncation YpsIP31758_0743 24 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 153949634 Pathogen - hypothetical protein YpsIP31758_4160 2 None None None 153950595 Common araG L-arabinose ABC transporter, ATP-binding protein YpsIP31758_1884 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153950559 Common - putative O-unit flippase protein Wzx YpsIP31758_3046 2 None None None 153949376 Common gcvH glycine cleavage system H protein YpsIP31758_0864 186 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 153947949 Common - oxidoreductase, aldo/keto reductase family YpsIP31758_1541 203 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 153949342 Common - putative hexuronate MFS transporter ExuT YpsIP31758_0490 151 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153947910 Pathogen - hypothetical protein YpsIP31758_1477 1 None None None 153947551 Pathogen - hypothetical protein YpsIP31758_3750 1 None None None 153949046 Common cheB chemotaxis response regulator protein-glutamate methylesterase YpsIP31758_1645 208 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 153949877 Common - gram-negative pili assembly chaperone YpsIP31758_2164 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153949285 Common - pili assembly chaperone protein YpsIP31758_4105 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153947155 Pathogen - hypothetical protein YpsIP31758_2195 1 None None None 153950821 Pathogen - hypothetical protein YpsIP31758_2256 1 None None None 153950420 Common - putative sensor histidine kinase/response regulator EsrA YpsIP31758_3832 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153950829 Common - transcriptional regulator, RpiR family YpsIP31758_3191 79 COG1737 RpiR, Transcriptional regulators Transcription 153948788 Common - hypothetical protein YpsIP31758_1336 13 COG1598 COG1598, Uncharacterized conserved protein Function unknown 153950756 Common - hypothetical protein YpsIP31758_1850 10 COG5618 COG5618, Predicted periplasmic lipoprotein General function prediction only 153950931 Common cutA divalent-cation tolerance protein cutA YpsIP31758_3680 118 COG1324 CutA, Uncharacterized protein involved in tolerance to divalent cations Inorganic ion transport and metabolism 153949401 Common brnQ branched-chain amino acid transport system II carrier protein YpsIP31758_3133 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 153950382 Common - transporter, major facilitator family YpsIP31758_2152 197 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948638 Common tadA tRNA-specific adenosine deaminase YpsIP31758_1145 216 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 153947573 Common fdhF anaerobic formate dehydrogenase, alpha subunit, archaeal-type YpsIP31758_3682 192 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 153947727 Common - putative lipoprotein YpsIP31758_1370 18 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 153950668 Common dnaA chromosomal replication initiator protein DnaA YpsIP31758_4153 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 153948598 Common - putative aspartate aminotransferase YpsIP31758_0538 241 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 153949998 Common thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein YpsIP31758_3415 186 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 153948815 Common - hypothetical protein YpsIP31758_0756 6 None None None 153948968 Common thiE thiamine-phosphate pyrophosphorylase YpsIP31758_3854 199 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 153949728 Common ccmC heme exporter protein CcmC YpsIP31758_1389 121 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 153949007 Common - hypothetical protein YpsIP31758_0212 19 COG5564 COG5564, Predicted TIM-barrel enzyme, possibly a dioxygenase General function prediction only 153947634 Common - YhhW family protein YpsIP31758_4023 145 COG1741 COG1741, Pirin-related protein General function prediction only 153950147 Common iscS cysteine desulfurase IscS YpsIP31758_1168 240 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 153947252 Common katA catalase YpsIP31758_2776 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 153947391 Common - hypothetical protein YpsIP31758_1627 10 None None None 153948369 Common frdC fumarate reductase, C subunit YpsIP31758_3669 23 COG3029 FrdC, Fumarate reductase subunit C Energy production and conversion 153949943 Pathogen - acid shock repeat protein YpsIP31758_1066 1 None None None 153949640 Common rseB sigma-E factor regulatory protein RseB YpsIP31758_1131 48 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 153946999 Common dsbB disulfide bond formation protein DsbB YpsIP31758_2001 51 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 153949035 Common iscA iron-sulfur cluster assembly protein IscA YpsIP31758_1170 164 COG0316 IscA, Uncharacterized conserved protein Function unknown 153950390 Pathogen pheL phe operon leader peptide YpsIP31758_3217 1 None None None 153948002 Common iucA aerobactin siderophore biosynthesis protein IucA YpsIP31758_0714 44 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 153950791 Common - periplasmic pectate lyase YpsIP31758_1692 5 None None None 153949353 Common truB tRNA pseudouridine synthase B YpsIP31758_3594 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 153950047 Common araH L-arabinose ABC transporter, permease protein YpsIP31758_1883 141 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153946990 Common tdh L-threonine 3-dehydrogenase YpsIP31758_0072 214 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 153948325 Common kdpD sensor protein KdpD YpsIP31758_1103 221 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 153948553 Common - hypothetical protein YpsIP31758_2935 12 None None None 153950175 Common - hypothetical protein YpsIP31758_0161 7 None None None 153949797 Common malQ 4-alpha-glucanotransferase YpsIP31758_3992 119 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 153947898 Pathogen - hypothetical protein YpsIP31758_3751 2 None None None 153949776 Common rpmJ ribosomal protein L36 YpsIP31758_3070 64 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 153950568 Common - gpr1/fun34/yaaH family protein YpsIP31758_3467 52 COG1584 COG1584, Predicted membrane protein Function unknown 153948871 Common ureH high-affinity nickel transport protein YpsIP31758_1085 37 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 153948557 Pathogen - hypothetical protein YpsIP31758_2099 1 None None None 153948364 Common rbsC5 ribose ABC transporter, permease protein YpsIP31758_2971 146 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153947020 Common - carboxylate/amino acid/amine transporter YpsIP31758_0263 28 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 153948851 Common pgk phosphoglycerate kinase YpsIP31758_0849 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 153949701 Pathogen - hypothetical protein YpsIP31758_3666 1 None None None 153948194 Common - oxidoreductase, Gfo/Idh/MocA family YpsIP31758_0497 129 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153950073 Common fliK2 flagellar hook-length control protein YpsIP31758_0658 16 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 153946997 Common - SufI protein YpsIP31758_0583 73 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 153948349 Common rbsC2 ribose ABC transporter, permease protein YpsIP31758_1509 111 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153950718 Pathogen - hypothetical protein YpsIP31758_0384 1 None None None 153947851 Common - glycosyl hydrolase, family 18 YpsIP31758_0611 22 COG3469 COG3469, Chitinase Carbohydrate transport and metabolism 153948858 Common - hypothetical protein YpsIP31758_3425 4 None None None 153947013 Common - hypothetical protein YpsIP31758_1347 5 COG4331 COG4331, Predicted membrane protein Function unknown 153948571 Common - transcriptional regulator, AsnC family YpsIP31758_0002 134 COG1522 Lrp, Transcriptional regulators Transcription 153949414 Common - topoisomerase DNA binding C4 zinc finger domain protein YpsIP31758_3879 144 COG0551 TopA, Zn-finger domain associated with topoisomerase type I DNA replication, recombination, and repair 153949629 Common - hypothetical protein YpsIP31758_2371 16 COG4811 COG4811, Predicted membrane protein Function unknown 153950055 Common clpX ATP-dependent Clp protease, ATP-binding subunit ClpX YpsIP31758_3091 230 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 153949937 Common - putative arginine/ornithine antiporter ArcD YpsIP31758_1828 112 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 153949647 Common - OsmC family protein YpsIP31758_3944 87 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 153949026 Pathogen - hypothetical protein YpsIP31758_0604 1 None None None 153948798 Common - putative enterotoxin YpsIP31758_3275 3 None None None 153948640 Common chbB PTS system, cellobiose-specific IIB component YpsIP31758_1091 28 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 153947339 Common - hypothetical protein YpsIP31758_3708 21 None None None 153947978 Pathogen - hypothetical protein YpsIP31758_1648 1 None None None 153948273 Common hpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YpsIP31758_2360 64 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 153948780 Common - heavy metal sensor histidine kinase YpsIP31758_2085 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153947726 Common clpB chaperone ClpB YpsIP31758_3212 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153949141 Common - ribonucleoside-diphosphate reductase, beta subunit YpsIP31758_1062 145 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 153947765 Common pyrB aspartate carbamoyltransferase YpsIP31758_0436 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 153947597 Common - hypothetical protein YpsIP31758_4096 15 COG3888 COG3888, Predicted transcriptional regulator Transcription 153948630 Common tyrB aromatic-amino-acid aminotransferase YpsIP31758_3763 80 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 153950707 Common - 6-phospho-beta-glucosidase BglA YpsIP31758_2729 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 153950010 Common - HAD hydrolase, IA family YpsIP31758_0029 62 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 153948757 Common cysA sulfate/thiosulfate ABC transporter, ATP-binding protein CysA YpsIP31758_1302 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 153949155 Common glnP glutamine ABC transporter, permease protein YpsIP31758_1494 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153950897 Common recR recombination protein RecR YpsIP31758_3057 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 153947429 Common - hypothetical protein YpsIP31758_2222 20 COG3566 COG3566, Uncharacterized protein conserved in bacteria Function unknown 153948260 Common cpxR2 transcriptional regulatory protein CpxR YpsIP31758_0084 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153948706 Pathogen - hypothetical protein YpsIP31758_1559 1 None None None 153946910 Common proC pyrroline-5-carboxylate reductase YpsIP31758_0829 212 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 153948627 Common ppx exopolyphosphatase YpsIP31758_1226 180 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 153949579 Common hemF coproporphyrinogen III oxidase, aerobic YpsIP31758_1280 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 153950625 Pathogen - hypothetical protein YpsIP31758_3696 3 None None None 153948539 Common dppD dipeptide ABC transporter, ATP-binding protein DppD YpsIP31758_4072 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 153947136 Common rplB ribosomal protein L2 YpsIP31758_3912 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 153947485 Common - tail collar domain protein YpsIP31758_2731 21 None None None 153949172 Common serC phosphoserine aminotransferase YpsIP31758_2583 114 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 153949332 Common - putative protein kinase YpsIP31758_0503 17 COG4248 COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains General function prediction only 153950528 Common oxyR hydrogen peroxide-inducible genes activator YpsIP31758_0138 192 COG0583 LysR, Transcriptional regulator Transcription 153947129 Common grpE co-chaperone GrpE YpsIP31758_2887 229 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 153948618 Common - phage P2 GpU YpsIP31758_2192 29 COG3499 COG3499, Phage protein U General function prediction only 153947454 Common - polysaccharide biosynthesis protein YpsIP31758_0190 24 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 153948261 Common - hypothetical protein YpsIP31758_0699 3 None None None 153947126 Common selA L-seryl-tRNA selenium transferase YpsIP31758_4115 72 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 153947836 Common acpH acyl carrier protein phosphodiesterase YpsIP31758_3125 32 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 153949217 Pathogen - hypothetical protein YpsIP31758_0249 1 None None None 153950367 Common - amidohydrolase family protein YpsIP31758_2151 46 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 153950747 Common rpe ribulose-phosphate 3-epimerase YpsIP31758_3962 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 153947546 Common - IS3 family transposase, orfA YpsIP31758_2076 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949846 Common - OmpA domain protein YpsIP31758_2507 131 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153950550 Common - phage antitermination protein Q YpsIP31758_2749 6 None None None 153948087 Common rpoA DNA-directed RNA polymerase, alpha subunit YpsIP31758_3890 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 153949773 Common fdx ferredoxin, 2Fe-2S type, ISC system YpsIP31758_1173 100 COG0633 Fdx, Ferredoxin Energy production and conversion 153947380 Pathogen - putative lipoprotein YpsIP31758_0723 1 None None None 153950769 Pathogen - hypothetical protein YpsIP31758_0104 1 None None None 153950780 Common thrC threonine synthase YpsIP31758_3474 144 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 153949992 Pathogen - hypothetical protein YpsIP31758_3172 3 None None None 153949513 Common bfr bacterioferritin YpsIP31758_3917 109 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 153947259 Common - transcriptional regulator, LuxR family YpsIP31758_1563 10 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153949837 Common pcp1 outer membrane lipoprotein PcP YpsIP31758_0378 26 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 153947491 Common dinI DNA-damage-inducible protein I YpsIP31758_1566 12 None None None 153950578 Common - chloride transporter, chloride channel (ClC) family YpsIP31758_1867 108 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 153947871 Common - hypothetical protein YpsIP31758_3145 136 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153950159 Common gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) YpsIP31758_0079 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 153947618 Common - drug resistance transporter, Bcr/CflA family YpsIP31758_1753 162 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153949399 Common xseA exodeoxyribonuclease VII, large subunit YpsIP31758_1193 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 153947023 Common - antirestriction protein YpsIP31758_3690 49 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 153948580 Common - peptidyl-prolyl cis-trans isomerase YpsIP31758_3088 140 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 153948241 Common - fimbrial assembly chaperone protein YpsIP31758_1676 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153947348 Common pepN aminopeptidase N YpsIP31758_2556 161 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 153950696 Common glpQ glycerophosphoryl diester phosphodiesterase YpsIP31758_0224 115 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 153948388 Common - putative lipoprotein YpsIP31758_1189 124 COG1520 COG1520, FOG: WD40-like repeat Function unknown 153950814 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_2150 179 COG0583 LysR, Transcriptional regulator Transcription 153949447 Common pspG phage shock protein G YpsIP31758_3767 9 None None None 153948328 Common - polar amino amino acid ABC transporter, PAAT family, permease protein YpsIP31758_4163 176 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153947683 Pathogen - hypothetical protein YpsIP31758_1197 1 None None None 153946846 Common rnhB ribonuclease HII YpsIP31758_1027 240 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 153948591 Common poxB pyruvate dehydrogenase (cytochrome) YpsIP31758_2619 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 153950653 Common aaeR transcriptional activator AaeR YpsIP31758_0418 159 COG0583 LysR, Transcriptional regulator Transcription 153949085 Common frwB PTS system, fructose-specific EIIB component 2 YpsIP31758_3530 68 COG1445 FrwB, Phosphotransferase system fructose-specific component IIB Carbohydrate transport and metabolism 153948611 Common ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YpsIP31758_0280 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 153948154 Common - hypothetical protein YpsIP31758_3473 91 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 153950521 Common - hypothetical protein YpsIP31758_2494 7 None None None 153950479 Common luxS S-ribosylhomocysteine lyase YpsIP31758_3233 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 153950869 Common wecD TDP-D-fucosamine acetyltransferase YpsIP31758_0188 16 COG0456 RimI, Acetyltransferases General function prediction only 153947607 Common recQ ATP-dependent DNA helicase RecQ YpsIP31758_0218 236 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 153950645 Common phoU phosphate transport system regulatory protein PhoU YpsIP31758_4167 195 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 153947739 Common - CrcB-like protein YpsIP31758_1089 148 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 153946967 Common - hypothetical protein YpsIP31758_3721 21 None None None 153950415 Common - transcriptional regulator, RpiR family YpsIP31758_2978 91 COG1737 RpiR, Transcriptional regulators Transcription 153949448 Common nrdR transcriptional regulator, NrdR family YpsIP31758_3118 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 153947226 Common rluE ribosomal large subunit pseudouridine synthase E YpsIP31758_1614 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 153949186 Common - hypothetical protein YpsIP31758_3199 8 None None None 153948764 Common - integral membrane protein YpsIP31758_1101 45 COG2510 COG2510, Predicted membrane protein Function unknown 153950002 Common - antibiotic biosynthesis monooxygenase domain protein YpsIP31758_1568 46 COG1359 COG1359, Uncharacterized conserved protein Function unknown 153950779 Pathogen - putative lipoprotein YpsIP31758_0787 1 None None None 153949457 Pathogen - hypothetical protein YpsIP31758_0387 1 None None None 153947677 Common - hydrolase, alpha/beta fold family YpsIP31758_1483 53 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 153947816 Pathogen - hypothetical protein YpsIP31758_2743 1 None None None 153947989 Common hutU urocanate hydratase YpsIP31758_4086 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 153950116 Common csdA cysteine sulfinate desulfinase YpsIP31758_0998 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 153948390 Pathogen - hypothetical protein YpsIP31758_4111 4 None None None 153947141 Common - hypothetical protein YpsIP31758_2838 37 COG4628 COG4628, Uncharacterized conserved protein Function unknown 153949122 Common - putative phosphoesterase YpsIP31758_2053 58 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 153950295 Common clpV2 type VI secretion ATPase, ClpV1 family YpsIP31758_0322 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153949985 Common rnb exoribonuclease II YpsIP31758_1904 191 COG4776 Rnb, Exoribonuclease II Transcription 153949193 Common chaA calcium/proton antiporter YpsIP31758_2124 54 COG0387 ChaA, Ca2+/H+ antiporter Inorganic ion transport and metabolism 153949980 Common cysK cysteine synthase A YpsIP31758_1318 218 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 153947214 Common ftsW cell division protein FtsW YpsIP31758_3388 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 153947506 Common fliL flagellar basal body-associated protein FliL YpsIP31758_2298 16 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 153949915 Pathogen - hypothetical protein YpsIP31758_3698 1 None None None 153950937 Common - hypothetical protein YpsIP31758_3987 10 None None None 153946855 Pathogen - hypothetical protein YpsIP31758_0804 1 None None None 153950469 Common aat leucyl/phenylalanyl-tRNA--protein transferase YpsIP31758_2603 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 153950878 Common - sigma-54 dependent transcriptional regulator YpsIP31758_0629 169 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153949169 Common - lysine N6-hydroxylase/L-ornithine N5-oxygenase family YpsIP31758_2447 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 153948301 Common - putative sugar-binding domain protein YpsIP31758_3245 69 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 153949060 Common rplJ ribosomal protein L10 YpsIP31758_3862 202 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 153946872 Common ppiB peptidyl-prolyl cis-trans isomerase B YpsIP31758_3015 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 153949225 Common fxsA protein fxsA YpsIP31758_3677 73 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 153949856 Common ushA protein ushA YpsIP31758_3032 140 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 153948624 Common bcp peroxiredoxin, bacterioferritin comigratory protein YpsIP31758_1245 216 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 153950036 Common - transcriptional regulator, LysR family YpsIP31758_1974 65 COG0583 LysR, Transcriptional regulator Transcription 153950126 Common nusB transcription antitermination factor NusB YpsIP31758_3115 198 COG0781 NusB, Transcription termination factor Transcription 153947565 Common rbsB2 ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_1507 101 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949203 Common nagA N-acetylglucosamine-6-phosphate deacetylase YpsIP31758_2910 119 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 153950762 Common yhbN cell envelope biogenesis protein YhbN YpsIP31758_0443 54 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 153949686 Common - methyl-accepting chemotaxis protein YpsIP31758_1643 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153949677 Common - fimbrial usher protein YpsIP31758_2676 32 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153947382 Common - nicotinamide-nucleotide adenylyltransferase YpsIP31758_3491 33 COG3172 NadR, Predicted ATPase/kinase involved in NAD metabolism Coenzyme metabolism 153946865 Common mltD membrane-bound lytic murein transglycosylase D YpsIP31758_1051 154 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 153949633 Pathogen - hypothetical protein YpsIP31758_2383 4 None None None 153947268 Common - conserved hypothetical protein TIGR00104 YpsIP31758_1039 95 COG1720 COG1720, Uncharacterized conserved protein Function unknown 153947929 Common gntP high-affinity gluconate transporter GntP YpsIP31758_0693 77 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 153950572 Common ybaK ybaK/ebsC protein YpsIP31758_3029 124 COG2606 EbsC, Uncharacterized conserved protein Function unknown 153949367 Common mglA galactose ABC transporter, ATP-binding protein YpsIP31758_2466 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153946860 Pathogen - hypothetical protein YpsIP31758_2271 1 None None None 153947367 Pathogen - hypothetical protein YpsIP31758_2340 1 None None None 153949160 Common - auxiliary transport protein, membrane fusion protein (MFP) family YpsIP31758_0106 87 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153949824 Common metC1 cystathionine beta-lyase YpsIP31758_0590 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 153948214 Common - hypothetical protein YpsIP31758_0498 38 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 153949010 Common - iron-sulfur cluster-binding protein YpsIP31758_2771 53 COG0633 Fdx, Ferredoxin Energy production and conversion 153950702 Common - protein GntX YpsIP31758_3989 135 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 153950812 Common sapD peptide ABC transporter, ATP-binding protein SapD YpsIP31758_1781 249 COG4170 SapD, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153949479 Common - hypothetical protein YpsIP31758_2269 3 None None None 153948686 Pathogen - hypothetical protein YpsIP31758_1938 1 None None None 153948906 Common - HpcH/HpaI aldolase/citrate lyase family protein YpsIP31758_2156 111 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 153949814 Common - IS1541, transposase YpsIP31758_1768 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153950316 Common - putative transcriptional regulator YpsIP31758_2213 8 COG4226 HicB, Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters Function unknown 153947319 Common mutY A/G-specific adenine glycosylase YpsIP31758_0819 231 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 153946944 Common - transporter, solute:sodium symporter (SSS) family YpsIP31758_1309 153 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 153949649 Common uxuR uxu operon transcriptional regulator YpsIP31758_2703 149 COG2186 FadR, Transcriptional regulators Transcription 153948396 Common - cupin domain protein YpsIP31758_1696 35 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 153948347 Pathogen - hypothetical protein YpsIP31758_0866 1 None None None 153949470 Common fliQ1 flagellar biosynthetic protein FliQ YpsIP31758_2303 112 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 153948108 Common - hypothetical protein YpsIP31758_0540 10 None None None 153947174 Pathogen - putative enterobacterial membrane protein YpsIP31758_3999 6 None None None 153950603 Common dnaN DNA polymerase III, beta subunit YpsIP31758_4152 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 153948409 Common - putative ABC transporter, aliphatic sulfonates binding protein YpsIP31758_0353 77 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 153947461 Common - PAP2 family protein YpsIP31758_2706 16 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 153948604 Pathogen - putative phage-related protein YpsIP31758_0413 5 None None None 153948162 Pathogen - hypothetical protein YpsIP31758_2230 1 None None None 153948197 Common gmhA2 phosphoheptose isomerase YpsIP31758_0473 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 153948512 Common rluD ribosomal large subunit pseudouridine synthase D YpsIP31758_3214 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 153947288 Pathogen - hypothetical protein YpsIP31758_2246 4 None None None 153947336 Common - hypothetical protein YpsIP31758_4016 3 None None None 153949622 Common - putative lipoprotein YpsIP31758_1841 22 None None None 153950278 Common - phosphoglycerate mutase family protein YpsIP31758_3480 157 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 153946879 Common fepG ferric enterobactin ABC transporter, permease protein FepG YpsIP31758_2443 176 COG4779 FepG, ABC-type enterobactin transport system, permease component Inorganic ion transport and metabolism 153950734 Common hmuU hemin ABC transporter, permease protein HmuU YpsIP31758_3804 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 153947310 Common - putative YggT family membrane protein YpsIP31758_0828 100 COG0762 COG0762, Predicted integral membrane protein Function unknown 153947844 Common - hypothetical protein YpsIP31758_2486 11 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 153950421 Common - hypothetical protein YpsIP31758_2041 20 COG3102 COG3102, Uncharacterized protein conserved in bacteria Function unknown 153949914 Common - HAD hydrolase, IA family YpsIP31758_3975 39 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 153949840 Common coaA pantothenate kinase YpsIP31758_3870 76 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 153949642 Common - putative xylose transport system permease protein XylH YpsIP31758_4099 110 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 153950224 Common folE GTP cyclohydrolase I YpsIP31758_2470 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 153948082 Common ptrB protease II YpsIP31758_2346 102 COG1770 PtrB, Protease II Amino acid transport and metabolism 153950164 Common potA spermidine/putrescine ABC transporter, ATP-binding subunit YpsIP31758_1216 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 153947442 Common phnA alkylphosphonate utilization operon protein PhnA YpsIP31758_1380 107 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 153947961 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2412 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153949016 Common lacZ beta-galactosidase YpsIP31758_1629 71 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 153947356 Pathogen - hypothetical protein YpsIP31758_0692 1 None None None 153948015 Pathogen - hypothetical protein YpsIP31758_2098 3 None None None 153948708 Common moaD molybdopterin converting factor, subunit 1 YpsIP31758_2834 69 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 153948520 Common yfeC chelated iron ABC transporter, permease protein YfeC YpsIP31758_1703 187 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 153946921 Common - hypothetical protein YpsIP31758_4017 3 None None None 153950509 Common iscU FeS cluster assembly scaffold IscU YpsIP31758_1169 150 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 153950919 Common - AlpA family protein YpsIP31758_0763 12 COG3311 AlpA, Predicted transcriptional regulator Transcription 153947628 Common - RHS/YD repeat protein YpsIP31758_3692 73 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153950809 Common - carbohydrate uptake ABC transporter-1 (CUT1) family, ATP-binding protein YpsIP31758_3572 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153947450 Common dsbE thiol:disulfide interchange protein DsbE YpsIP31758_1393 115 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 153947712 Common recJ single-stranded-DNA-specific exonuclease RecJ YpsIP31758_0881 196 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 153949847 Common flgK2 flagellar hook-associated protein FlgK YpsIP31758_0648 124 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 153948887 Common - ABC transporter, periplasmic substrate-binding protein YpsIP31758_1258 53 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 153949272 Common - hypothetical protein YpsIP31758_3649 12 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 153948420 Common typA GTP-binding protein TypA/BipA YpsIP31758_0028 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 153948028 Common - fimbrial protein YpsIP31758_0613 17 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153949238 Pathogen - hypothetical protein YpsIP31758_1195 1 None None None 153946884 Common mglC galactose ABC transporter, permease protein YpsIP31758_2465 119 COG4211 MglC, ABC-type glucose/galactose transport system, permease component Carbohydrate transport and metabolism 153948305 Common - hypothetical protein YpsIP31758_3710 17 None None None 153947845 Common - putative tellurium resistance protein YpsIP31758_0505 25 COG4245 TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain General function prediction only 153949181 Common pncA pyrazinamidase/nicotinamidase YpsIP31758_1984 121 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 153948451 Common prt CDP-paratose synthetase YpsIP31758_3048 33 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153948831 Pathogen - hypothetical protein YpsIP31758_0053 1 None None None 153949598 Common - hypothetical protein YpsIP31758_4038 49 None None None 153950101 Common - OmpA domain protein YpsIP31758_3422 111 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 153947473 Common - hypothetical protein YpsIP31758_1225 7 None None None 153947950 Common murI glutamate racemase YpsIP31758_0143 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 153950354 Common - hypothetical protein YpsIP31758_3235 76 COG1238 COG1238, Predicted membrane protein Function unknown 153948465 Common tolR protein TolR YpsIP31758_2870 110 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 153948021 Pathogen - hypothetical protein YpsIP31758_0749 5 None None None 153949570 Common gppA guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YpsIP31758_0177 181 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 153949769 Pathogen - hypothetical protein YpsIP31758_0200 1 None None None 153947204 Common - plasmid conserved hypothetical protein, RAQPRD family YpsIP31758_3713 18 None None None 153947944 Common rpsT ribosomal protein S20 YpsIP31758_3462 141 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 153948927 Common - hypothetical protein YpsIP31758_2181 24 COG3514 COG3514, Uncharacterized protein conserved in bacteria Function unknown 153949137 Common - HAD-superfamily hydrolase, subfamily IB, TIGR01490 YpsIP31758_2664 67 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 153947134 Common - porin YpsIP31758_2761 31 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 153947514 Common - Rhs element Vgr protein YpsIP31758_3429 57 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153950209 Common - haemolysin secretion/activation protein, ShlB/FhaC/HecB family YpsIP31758_4076 30 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 153948280 Common hmuR TonB-dependent hemin receptor HmuR YpsIP31758_3801 100 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 153948681 Common - hypothetical protein YpsIP31758_2186 6 None None None 153949099 Common - AsmA protein YpsIP31758_2451 41 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 153949790 Common - hypothetical protein YpsIP31758_2891 68 COG2914 COG2914, Uncharacterized protein conserved in bacteria Function unknown 153950500 Common - YaiI/YqxD family protein YpsIP31758_1279 97 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 153948744 Pathogen - hypothetical protein YpsIP31758_2475 1 None None None 153950892 Common nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit YpsIP31758_3166 40 COG1726 NqrA, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA Energy production and conversion 153949290 Pathogen - hypothetical protein YpsIP31758_0790 1 None None None 153947795 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_3022 224 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 153947704 Common fliR2 flagellar biosynthetic protein FliR YpsIP31758_0624 117 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 153949143 Common - putative phage integrase YpsIP31758_3686 124 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 153950687 Common - flagella basal body P-ring formation protein FlgA YpsIP31758_0638 45 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 153950238 Common - hydrolase, Cof family YpsIP31758_0222 116 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 153950320 Common msrA methionine-S-sulfoxide reductase YpsIP31758_3626 204 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 153948842 Common feoB ferrous iron transport protein B YpsIP31758_3985 184 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 153947433 Common hisI histidine biosynthesis bifunctional protein hisIE YpsIP31758_2435 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 153947583 Common - lipoprotein, NLPA family YpsIP31758_2662 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 153948729 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_1864 229 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 153950067 Common - 5,10-methenyltetrahydrofolate synthetase YpsIP31758_0857 192 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 153950517 Common - electron transport complex, RnfABCDGE type, D subunit YpsIP31758_1898 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 153949757 Common - hypothetical protein YpsIP31758_1371 49 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 153950677 Common - carbohydrate uptake (CUT2 family) ABC transporter, periplasmic carbohydrate-binding protein YpsIP31758_0364 88 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949732 Common - ImpA domain protein YpsIP31758_1359 18 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153950440 Common mrcA penicillin-binding protein 1A YpsIP31758_3972 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 153947266 Common - hypothetical protein YpsIP31758_0485 19 COG1422 COG1422, Predicted membrane protein Function unknown 153950388 Common setA sugar efflux transporter A YpsIP31758_3409 54 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153947125 Common - hypothetical protein YpsIP31758_0697 5 None None None 153948076 Common - hypothetical protein YpsIP31758_1496 37 COG1434 COG1434, Uncharacterized conserved protein Function unknown 153946981 Common - ABC transporter, permease/ATP-binding protein YpsIP31758_0689 247 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 153950529 Common ygbF tol-pal system protein YbgF YpsIP31758_2866 69 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 153946837 Common - IS1541, transposase YpsIP31758_0181 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153948430 Common mioC MioC protein YpsIP31758_0001 81 COG0716 FldA, Flavodoxins Energy production and conversion 153949524 Common - ABC dipeptide/oligopeptide/nickel transporter, periplasmic dipeptide/oligopeptide/nickel-binding protein YpsIP31758_3551 179 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 153950836 Common putP sodium/proline symporter YpsIP31758_2265 180 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 153947152 Common - hypothetical protein YpsIP31758_3327 129 COG2860 COG2860, Predicted membrane protein Function unknown 153948984 Common - hypothetical protein YpsIP31758_2097 107 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 153948562 Common rimI ribosomal-protein-alanine acetyltransferase YpsIP31758_3505 199 COG0456 RimI, Acetyltransferases General function prediction only 153948001 Common - hypothetical protein YpsIP31758_1530 33 COG2152 COG2152, Predicted glycosylase Carbohydrate transport and metabolism 153949584 Common - ompA family protein YpsIP31758_3488 158 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153948718 Common - putative GTP-binding protein EngB YpsIP31758_0022 176 COG0218 COG0218, Predicted GTPase General function prediction only 153950407 Pathogen - hypothetical protein YpsIP31758_1448 1 None None None 153947532 Common - membrane protein YpsIP31758_0394 73 COG2717 COG2717, Predicted membrane protein Function unknown 153947593 Common nhaC Na+/H+ antiporter NhaC YpsIP31758_1856 50 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 153949902 Pathogen - hypothetical protein YpsIP31758_2716 1 None None None 153948918 Common smg smg protein YpsIP31758_3880 40 COG2922 Smg, Uncharacterized protein conserved in bacteria Function unknown 153948487 Pathogen - hypothetical protein YpsIP31758_0035 1 None None None 153948077 Common - hypothetical protein YpsIP31758_1009 17 None None None 153947072 Pathogen - hypothetical protein YpsIP31758_0651 2 None None None 153950565 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase YpsIP31758_3654 213 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 153950447 Common - peptidase, M23 family domain protein YpsIP31758_0074 187 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 153948498 Common - pirin family protein YpsIP31758_1995 147 COG1741 COG1741, Pirin-related protein General function prediction only 153948317 Common - hypothetical protein YpsIP31758_3748 128 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 153948736 Common - radical SAM domain protein, Cfr family YpsIP31758_1183 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 153947893 Pathogen - hypothetical protein YpsIP31758_0757 4 None None None 153950093 Common - fimbrial protein YpsIP31758_0171 20 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153949441 Common - Methylenetetrahydrofolate reductase YpsIP31758_3796 127 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 153948945 Common gltX glutamyl-tRNA synthetase YpsIP31758_1325 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 153947116 Common - cyclic diguanylate phosphodiesterase (EAL) domain protein YpsIP31758_1433 21 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 153949504 Common - conserved hypothetical protein TIGR00275 YpsIP31758_4032 136 COG2081 COG2081, Predicted flavoproteins General function prediction only 153949927 Common - hypothetical protein YpsIP31758_2108 200 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 153950579 Common - hypothetical protein YpsIP31758_0823 12 None None None 153949539 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase YpsIP31758_3443 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 153950850 Common - putative oxidoreductase YpsIP31758_2047 157 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153949484 Common - Polysaccharide deacetylase YpsIP31758_1728 21 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 153947027 Common - putative soluble lytic murein transglycosylase YpsIP31758_3484 169 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 153949602 Common nrdD anaerobic ribonucleoside-triphosphate reductase YpsIP31758_3556 99 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 153947859 Common - fructosamine kinase family protein YpsIP31758_1700 70 COG3001 COG3001, Uncharacterized protein conserved in bacteria Function unknown 153948414 Common - transporter, major facilitator family YpsIP31758_3103 213 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153950922 Common - putative quinone oxidoreductase, YhdH/YhfP family protein YpsIP31758_0396 111 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 153950855 Common lrp leucine-responsive regulatory protein YpsIP31758_2597 158 COG1522 Lrp, Transcriptional regulators Transcription 153950533 Common - glutaminase YpsIP31758_2143 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 153949519 Common aroC chorismate synthase YpsIP31758_1405 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 153948958 Common - hypothetical protein YpsIP31758_1156 12 COG2186 FadR, Transcriptional regulators Transcription 153946908 Common dppB dipeptide ABC transporter, permease protein DppB YpsIP31758_4074 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153950873 Common - site-specific recombinase, phage integrase family YpsIP31758_0809 104 COG0582 XerC, Integrase DNA replication, recombination, and repair 153946894 Common - sulfatase YpsIP31758_0945 86 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 153947399 Common - putative autotransporter protein YpsIP31758_0695 88 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153950242 Common - ABC transporter, ATP-binding protein YpsIP31758_1260 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 153950202 Common - hypothetical protein YpsIP31758_3169 54 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 153947820 Common - hypothetical protein YpsIP31758_1827 5 None None None 153948948 Common - hypothetical protein YpsIP31758_0900 6 None None None 153950499 Pathogen - hypothetical protein YpsIP31758_2168 1 None None None 153949802 Common hpaG2 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit YpsIP31758_2364 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 153948357 Common - hypothetical protein YpsIP31758_1284 4 COG4849 COG4849, Uncharacterized protein conserved in bacteria Function unknown 153948434 Common hemD uroporphyrinogen-III synthase YpsIP31758_0197 54 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 153948133 Common - putative phoH protein YpsIP31758_2125 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 153947242 Pathogen - hypothetical protein YpsIP31758_1532 1 None None None 153950577 Common gluQ glutamyl-Q tRNA(Asp) synthetase YpsIP31758_3339 246 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 153947168 Common - glutathione S-transferase YpsIP31758_0370 96 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 153949831 Pathogen thrL thr operon leader peptide YpsIP31758_3477 1 None None None 153947069 Common nirD nitrite reductase [NAD(P)H], small subunit YpsIP31758_3957 45 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 153948816 Common hscA Fe-S protein assembly chaperone HscA YpsIP31758_1172 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 153950452 Common - hypothetical protein YpsIP31758_2740 10 None None None 153948458 Common rpmC ribosomal protein L29 YpsIP31758_3907 86 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 153948427 Common - carboxymuconolactone decarboxylase family protein YpsIP31758_2086 83 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 153950845 Common - hypothetical protein YpsIP31758_2942 3 None None None 153947044 Common astD succinylglutamic semialdehyde dehydrogenase YpsIP31758_2119 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153950378 Common msrB methionine-R-sulfoxide reductase YpsIP31758_1986 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 153949861 Pathogen - hypothetical protein YpsIP31758_2342 1 None None None 153948287 Common - hypothetical protein YpsIP31758_0237 16 COG3776 COG3776, Predicted membrane protein Function unknown 153948667 Common crp catabolite gene activator YpsIP31758_3945 170 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 153949114 Common - hypothetical protein YpsIP31758_1296 30 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 153948787 Pathogen - hypothetical protein YpsIP31758_3635 2 None None None 153947624 Common folB dihydroneopterin aldolase YpsIP31758_0558 57 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 153948121 Common - sensor histidine kinase YpsIP31758_4007 105 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 153947053 Common argB acetylglutamate kinase YpsIP31758_0128 210 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 153949350 Common terB tellurite resistance protein YpsIP31758_3787 16 COG3793 TerB, Tellurite resistance protein Inorganic ion transport and metabolism 153950615 Common malF maltose ABC transporter, permease protein YpsIP31758_0305 160 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153947887 Common - transporter, auxin efflux carrier (AEC) family protein YpsIP31758_0261 146 COG0679 COG0679, Predicted permeases General function prediction only 153949521 Common apt adenine phosphoribosyltransferase YpsIP31758_3060 190 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 153950437 Common - hypothetical protein YpsIP31758_3925 48 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 153947360 Pathogen - hypothetical protein YpsIP31758_4172 1 None None None 153949883 Common artJ arginine ABC transporter, periplasmic substrate-binding protein ArtJ YpsIP31758_2639 182 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153948207 Common - adhesin/haemagluttinin repeat protein YpsIP31758_0510 86 COG3210 FhaB, Large exoproteins involved in heme utilization or adhesion Intracellular trafficking and secretion 153950217 Common metN D-methionine ABC transporter, ATP-binding protein YpsIP31758_1043 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 153950627 Common fbaA fructose-bisphosphate aldolase, class II YpsIP31758_0850 170 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 153947343 Common - conserved hypothetical protein TIGR00255 YpsIP31758_0055 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 153946848 Pathogen - hypothetical protein YpsIP31758_3438 1 COG5419 COG5419, Uncharacterized conserved protein Function unknown 153947971 Common - putative sulfatase regulator YpsIP31758_1264 113 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 153948382 Common - hypothetical protein YpsIP31758_0899 4 None None None 153948534 Common - hypothetical protein YpsIP31758_2200 16 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 153947535 Common hpaR homoprotocatechuate degradation operon regulator, HpaR YpsIP31758_2366 58 COG1846 MarR, Transcriptional regulators Transcription 153950671 Common pemA pectinesterase A YpsIP31758_3511 15 COG4677 PemB, Pectin methylesterase Carbohydrate transport and metabolism 153950914 Common guaB inosine-5'-monophosphate dehydrogenase YpsIP31758_1194 234 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 153950759 Common - putative autotransporter protein YpsIP31758_2985 31 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153948783 Common sprT sprT protein YpsIP31758_0840 26 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 153948222 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase YpsIP31758_3390 226 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 153950527 Common glnB nitrogen regulatory protein P-II 1 YpsIP31758_1155 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 153947308 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_2672 183 COG0583 LysR, Transcriptional regulator Transcription 153949652 Common - TRAP transporter, DctQ-like membrane protein YpsIP31758_2400 55 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 153947527 Common argO arginine exporter protein ArgO YpsIP31758_0852 82 COG1279 COG1279, Lysine efflux permease General function prediction only 153950763 Common htrB1 lipid A biosynthesis lauroyl acyltransferase YpsIP31758_1556 89 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 153950546 Common - putative lipoprotein YpsIP31758_2051 20 None None None 153948012 Common togA oligogalacturonide ABC transporter, ATP-binding protein YpsIP31758_1689 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153949933 Common phnE phosphonate ABC transporter, permease protein YpsIP31758_2797 130 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 153948276 Common - glycerophosphoryl diester phosphodiesterase family YpsIP31758_2055 129 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 153948805 Pathogen - hypothetical protein YpsIP31758_1453 1 None None None 153950563 Common cfa cyclopropane-fatty-acyl-phospholipid synthase YpsIP31758_1752 144 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 153947258 Common rhaB rhamnulokinase YpsIP31758_3755 138 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 153949355 Common - nucleoside triphosphatase, D5 family YpsIP31758_0890 40 COG3378 COG3378, Predicted ATPase General function prediction only 153950365 Pathogen - hypothetical protein YpsIP31758_2235 1 None None None 153949613 Common - hypothetical protein YpsIP31758_3598 178 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 153949170 Common - putative diguanylate cyclase/cyclic diguanylate phosphodiesterase protein YpsIP31758_0397 147 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 153947374 Common dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YpsIP31758_1010 140 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 153947594 Common azoR FMN-dependent NADH-azoreductase YpsIP31758_1814 98 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 153950210 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_4022 127 COG1609 PurR, Transcriptional regulators Transcription 153947928 Common - putative lipoprotein YpsIP31758_4144 10 COG5645 COG5645, Predicted periplasmic lipoprotein General function prediction only 153949703 Common - SirB1 protein YpsIP31758_2063 51 COG2912 COG2912, Uncharacterized conserved protein Function unknown 153948385 Common rpoS RNA polymerase sigma factor RpoS YpsIP31758_3293 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 153948137 Common - putative lipoprotein YpsIP31758_0596 7 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 153947456 Pathogen - putative antigen YpsIP31758_2678 1 None None None 153947270 Common minE cell division topological specificity factor MinE YpsIP31758_2012 76 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 153947209 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YpsIP31758_0264 142 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 153949327 Pathogen - hypothetical protein YpsIP31758_2220 1 None None None 153950823 Common - hypothetical protein YpsIP31758_0152 23 COG3085 COG3085, Uncharacterized protein conserved in bacteria Function unknown 153948032 Common - hydrolase, NUDIX family YpsIP31758_0574 65 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 153950557 Common - baseplate assembly protein V, truncation YpsIP31758_2183 26 COG4540 gpV, Phage P2 baseplate assembly protein gpV General function prediction only 153946978 Common tmk thymidylate kinase YpsIP31758_1583 231 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 153948360 Common rplQ ribosomal protein L17 YpsIP31758_3889 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 153948157 Common - hypothetical protein YpsIP31758_3436 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 153947877 Pathogen - hypothetical protein YpsIP31758_2219 1 None None None 153948750 Common - type III secretion protein, YscU/HrpY family YpsIP31758_3811 130 COG4792 EscU, Type III secretory pathway, component EscU Intracellular trafficking and secretion 153949352 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_3129 208 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153947553 Common - transporter, major facilitator family YpsIP31758_2406 60 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153948745 Common - methyl-accepting chemotaxis protein YpsIP31758_1631 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153948148 Common polA DNA polymerase I YpsIP31758_0021 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 153947990 Common - electron transport complex, RnfABCDGE type, C subunit YpsIP31758_1896 74 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 153949795 Common - MazG family protein YpsIP31758_3318 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 153947494 Common - kinase, pfkB family YpsIP31758_2969 157 COG3892 COG3892, Uncharacterized protein conserved in bacteria Function unknown 153949995 Common - hypothetical protein YpsIP31758_0871 19 COG5472 COG5472, Predicted small integral membrane protein Function unknown 153947837 Common - hypothetical protein YpsIP31758_2816 8 None None None 153949428 Common rne ribonuclease E YpsIP31758_1569 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 153949346 Common - peptidase, M24 family YpsIP31758_1308 220 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 153950071 Common - glutaminase YpsIP31758_0822 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 153949726 Common - ribonucleoside-diphosphate reductase, alpha subunit YpsIP31758_1063 217 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 153949097 Common rpsJ ribosomal protein S10 YpsIP31758_3916 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 153948460 Common - ParB family protein YpsIP31758_0771 78 COG1475 Spo0J, Predicted transcriptional regulators Transcription 153948298 Common thiF adenylyltransferase ThiF YpsIP31758_3855 206 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 153948911 Common - IS1541, transposase YpsIP31758_3905 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947997 Common - site-specific recombinase, resolvase family YpsIP31758_0770 52 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 153947475 Common - hypothetical protein YpsIP31758_4082 34 COG2267 PldB, Lysophospholipase Lipid metabolism 153948363 Common - nonribosomal peptide synthetase YpsIP31758_0683 236 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 153950719 Common - putative manno(fructo)kinase YpsIP31758_3140 153 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 153947277 Common - CrcB-like protein YpsIP31758_1088 116 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 153949623 Common cydD ABC transporter, permease/ATP-binding protein CydD YpsIP31758_2600 245 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 153946935 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_0927 112 COG1609 PurR, Transcriptional regulators Transcription 153947699 Common - putative penicillin-binding protein AmpH YpsIP31758_2758 130 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 153948074 Pathogen - hypothetical protein YpsIP31758_2700 1 None None None 153947686 Common psiE protein PsiE YpsIP31758_0303 22 COG3223 COG3223, Predicted membrane protein Function unknown 153950858 Common - hypothetical protein YpsIP31758_0746 13 None None None 153950428 Pathogen - hypothetical protein YpsIP31758_3839 1 None None None 153949183 Common ccmI cytochrome c-type biogenesis protein CcmI YpsIP31758_1395 52 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 153947571 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, ATP-binding protein YpsIP31758_2308 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153947852 Common - tail collar domain protein YpsIP31758_2198 15 None None None 153948970 Pathogen - hypothetical protein YpsIP31758_2937 1 None None None 153947206 Common - CAAX amino terminal protease family protein YpsIP31758_2854 38 None None None 153949896 Common - hypothetical protein YpsIP31758_0103 21 COG3074 COG3074, Uncharacterized protein conserved in bacteria Function unknown 153949358 Common sbcC nuclease SbcCD, C subunit YpsIP31758_3139 97 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 153949464 Common - fumarylacetoacetate hydrolase family protein YpsIP31758_2411 183 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 153948636 Common fabD malonyl CoA-acyl carrier protein transacylase YpsIP31758_1577 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 153950659 Common - hypothetical protein YpsIP31758_1992 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 153949385 Common - hypothetical protein YpsIP31758_3745 24 None None None 153948559 Common - CAAX amino terminal protease family protein YpsIP31758_0721 39 None None None 153947654 Common - ABC transporter, permease protein YpsIP31758_2814 140 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 153948538 Common - carbohydrate uptake (CUT1 family) ABC transporter, permease protein YpsIP31758_1529 145 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 153950056 Common rpsE ribosomal protein S5 YpsIP31758_3897 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 153950905 Common - phospholipase, patatin family YpsIP31758_3501 55 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 153949975 Pathogen - hypothetical protein YpsIP31758_0765 1 None None None 153949770 Common - hypothetical protein YpsIP31758_2469 49 COG2311 COG2311, Predicted membrane protein Function unknown 153948037 Common galK galactokinase YpsIP31758_2857 96 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 153949075 Common - hypothetical protein YpsIP31758_1086 5 None None None 153948445 Common - outer membrane efflux protein YpsIP31758_0533 124 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153950137 Common - putative autotransporter protein YpsIP31758_4055 38 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153947562 Common - hypothetical protein YpsIP31758_0669 6 None None None 153948566 Common - ImpA domain protein YpsIP31758_2485 10 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153948165 Common gltD glutamate synthase, small subunit YpsIP31758_0465 212 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 153950344 Common lnt apolipoprotein N-acyltransferase YpsIP31758_2919 165 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 153950605 Common aroF phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive YpsIP31758_3220 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 153948873 Pathogen - hypothetical protein YpsIP31758_0842 1 None None None 153947578 Common mraW S-adenosyl-methyltransferase MraW YpsIP31758_3395 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 153948051 Common rseA sigma E factor negative regulatory protein YpsIP31758_1130 31 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 153948692 Common mutS DNA mismatch repair protein MutS YpsIP31758_3292 203 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 153950243 Common - dihydroxyacetone kinase, L subunit YpsIP31758_3285 67 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 153947577 Pathogen - hypothetical protein YpsIP31758_2208 1 None None None 153949966 Common purH bifunctional purine biosynthesis protein PurH YpsIP31758_3843 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 153948994 Common - glycosyl hydrolase, family 3 YpsIP31758_2994 121 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 153948642 Common dmsC anaerobic dimethyl sulfoxide reductase, C subunit YpsIP31758_3259 21 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 153949241 Common argR arginine repressor YpsIP31758_3617 73 COG1438 ArgR, Arginine repressor Transcription 153946932 Common - hypothetical protein YpsIP31758_1491 28 COG3129 COG3129, Predicted SAM-dependent methyltransferase General function prediction only 153948821 Common - hypothetical protein YpsIP31758_4124 9 None None None 153947731 Common treB pts system, trehalose-specific IIBC component YpsIP31758_0431 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 153947349 Common - hypothetical protein YpsIP31758_1323 6 None None None 153948977 Common - hypothetical protein YpsIP31758_0550 2 None None None 153949402 Common - class II aldolase/adducin N-terminal domain protein YpsIP31758_2747 151 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 153948060 Common sseA 3-mercaptopyruvate sulfurtransferase YpsIP31758_2787 145 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 153950395 Common sapC peptide ABC transporter, permease protein SapC YpsIP31758_1782 208 COG4171 SapC, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 153950048 Common - putative amino acid ABC transporter, ATP-binding protein YpsIP31758_2840 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 153948674 Common gidA glucose-inhibited division protein A YpsIP31758_4186 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 153948570 Common flgE2 flagellar hook protein flgE YpsIP31758_0642 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 153949409 Common - hypothetical protein YpsIP31758_0966 31 COG3531 COG3531, Predicted protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 153947777 Common galT galactose-1-phosphate uridylyltransferase YpsIP31758_2856 79 COG1085 GalT, Galactose-1-phosphate uridylyltransferase Energy production and conversion 153947008 Common ansP L-asparagine permease YpsIP31758_2147 178 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153948379 Common - multidrug resistance protein, SMR family protein YpsIP31758_1804 139 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 153950633 Common - hypothetical protein YpsIP31758_3063 14 None None None 153948725 Common glnH glutamine ABC transporter, periplasmic glutamine-binding protein YpsIP31758_1495 184 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153949568 Common rbsA1 ribose ABC transporter, ATP-binding protein YpsIP31758_0912 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153949095 Common - hypothetical protein YpsIP31758_3716 21 None None None 153950150 Common - hypothetical protein YpsIP31758_2696 36 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 153950804 Common - putative lipoprotein YpsIP31758_1472 39 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 153950620 Common hisB histidine biosynthesis bifunctional protein HisB YpsIP31758_2431 217 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 153949536 Common - ABC transporter, periplamic substrate-binding protein YpsIP31758_2711 179 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 153948769 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 YpsIP31758_0208 60 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 153947868 Common rpmG ribosomal protein L33 YpsIP31758_0063 136 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 153947235 Common - PP-loop family protein YpsIP31758_1802 162 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 153950192 Common ptsP phosphoenolpyruvate-protein phosphotransferase PtsP YpsIP31758_0982 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 153949780 Common lolE lipoprotein releasing system, transmembrane protein LolE YpsIP31758_1602 165 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 153947294 Common - transcriptional regulator, LysR family YpsIP31758_0417 75 COG0583 LysR, Transcriptional regulator Transcription 153948751 Pathogen - hypothetical protein YpsIP31758_1159 1 None None None 153948372 Common xerD tyrosine recombinase XerD YpsIP31758_0879 230 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 153949322 Common - HAMP domain protein YpsIP31758_2287 106 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 153948334 Common rluA ribosomal large subunit pseudouridine synthase A YpsIP31758_3439 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 153947667 Common - CoA binding domain protein YpsIP31758_2533 131 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 153948938 Common rplO ribosomal protein L15 YpsIP31758_3895 203 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 153948649 Pathogen - hypothetical protein YpsIP31758_1988 1 None None None 153949080 Common - hypothetical protein YpsIP31758_2748 57 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 153949049 Common copD copper resistance protein D YpsIP31758_2338 34 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 153950180 Common phnK phosphonate C-P lyase system protein PhnK YpsIP31758_3564 249 COG4107 PhnK, ABC-type phosphonate transport system, ATPase component Inorganic ion transport and metabolism 153950638 Common uppS undecaprenyl diphosphate synthase YpsIP31758_1018 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 153947881 Common dsbA thiol:disulfide interchange protein DsbA YpsIP31758_0020 67 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 153949036 Common ftsQ cell division protein FtsQ YpsIP31758_3384 77 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 153950544 Common - transcriptional regulator, GntR family YpsIP31758_0383 132 COG1802 GntR, Transcriptional regulators Transcription 153948599 Common - hypothetical protein YpsIP31758_3434 22 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153946939 Common - OmpA domain protein YpsIP31758_0730 131 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153950844 Common - carbon starvation protein CstA YpsIP31758_0268 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 153948252 Common - hypothetical protein YpsIP31758_3433 10 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 153949087 Common - fimbrial family protein YpsIP31758_1678 15 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153949700 Pathogen - hypothetical protein YpsIP31758_0107 1 None None None 153948017 Pathogen - hypothetical protein YpsIP31758_0806 1 None None None 153949554 Common - hypothetical protein YpsIP31758_0901 9 None None None 153947060 Common tuf2 translation elongation factor Tu YpsIP31758_3867 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 153947010 Common mgtE magnesium transporter YpsIP31758_1224 170 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 153950482 Common gabT 4-aminobutyrate transaminase YpsIP31758_1218 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 153950019 Common - nodulation efficiency protein D YpsIP31758_3025 42 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 153949841 Common - transporter, monovalent cation:proton antiporter-2 (CPA2) family YpsIP31758_3034 213 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 153947322 Common - transcriptional regulator, AraC family YpsIP31758_2387 133 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153950029 Common betI transcriptional regulator BetI YpsIP31758_2829 62 COG1309 AcrR, Transcriptional regulator Transcription 153950535 Common - hypothetical protein YpsIP31758_0782 31 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153948713 Common - oxidoreductase, aldo/keto reductase family YpsIP31758_1766 158 COG4989 COG4989, Predicted oxidoreductase General function prediction only 153949742 Pathogen - hypothetical protein YpsIP31758_3645 1 None None None 153947150 Common - Endoribonuclease L-PSP YpsIP31758_2018 95 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 153950174 Common - hypothetical protein YpsIP31758_2511 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 153949924 Common cutF copper homeostasis protein CutF YpsIP31758_1037 24 COG3015 CutF, Uncharacterized lipoprotein NlpE involved in copper resistance Cell envelope biogenesis, outer membrane / Inorganic ion transport and metabolism 153949636 Common - Ankyrin repeat protein YpsIP31758_1125 22 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 153950582 Common cpdP 3',5'-cyclic-nucleotide phosphodiesterase YpsIP31758_1113 26 COG5212 PDE1, Low-affinity cAMP phosphodiesterase Signal transduction mechanisms 153950274 Common - hypothetical protein YpsIP31758_0331 10 None None None 153950375 Common oppA oligopeptide ABC transporter, periplasmic oligopeptide-binding protein YpsIP31758_1960 208 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 153950477 Pathogen - hypothetical protein YpsIP31758_2932 1 None None None 153947934 Common fliS2 flagellar protein FliS YpsIP31758_2284 93 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 153947947 Common - acyl-CoA dehydrogenase family protein YpsIP31758_3643 140 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 153949029 Common cycA D-serine/D-alanine/glycine transporter YpsIP31758_2259 167 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153949788 Common - RIO1 family protein kinase YpsIP31758_2390 65 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 153948720 Common - hypothetical protein YpsIP31758_1192 9 None None None 153949031 Pathogen - hypothetical protein YpsIP31758_4061 1 None None None 153950770 Common - nucleoid-associated protein NdpA YpsIP31758_2721 31 COG3081 COG3081, Nucleoid-associated protein General function prediction only 153948889 Common ligK 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YpsIP31758_0093 59 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 153947085 Pathogen - hypothetical protein YpsIP31758_0793 1 None None None 153950737 Common lexA LexA repressor YpsIP31758_3770 174 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 153949684 Common - hypothetical protein YpsIP31758_3527 16 None None None 153949433 Common - GlcNAc-PI de-N-acetylase family YpsIP31758_0094 38 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 153950590 Common - UDP-glucose/GDP-mannose dehydrogenase family protein YpsIP31758_1968 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 153949715 Common kdgK 2-dehydro-3-deoxygluconokinase YpsIP31758_4062 124 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 153947741 Pathogen - hypothetical protein YpsIP31758_0783 1 None None None 153947748 Common - sulfate ABC transporter, sulfate-binding protein YpsIP31758_0090 91 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 153947157 Common ilvY transcriptional regulator IlvY YpsIP31758_0162 180 COG0583 LysR, Transcriptional regulator Transcription 153946895 Common - hypothetical protein YpsIP31758_1719 9 None None None 153950149 Common lpxH UDP-2,3-diacylglucosamine hydrolase YpsIP31758_3016 79 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 153947632 Pathogen - hypothetical protein YpsIP31758_1523 1 None None None 153946902 Common - hypothetical protein YpsIP31758_3571 7 None None None 153947513 Pathogen - hypothetical protein YpsIP31758_1096 1 None None None 153949860 Common - putative sodium/bile acid symporter family protein YpsIP31758_1880 56 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 153948374 Common atpG ATP synthase F1, gamma subunit YpsIP31758_4177 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 153946973 Common - MATE efflux family protein YpsIP31758_2407 141 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 153950690 Common uhpA transcriptional regulatory protein UhpA YpsIP31758_4080 184 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153950221 Common ilvM acetolactate synthase isozyme II small subunit YpsIP31758_0155 23 COG3978 COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit Function unknown 153948404 Common - crispr-associated protein, Csy4 family YpsIP31758_1540 21 None None None 153950681 Common - hypothetical protein YpsIP31758_1861 2 None None None 153949867 Common - iron chelate ABC transporter, permease protein YpsIP31758_4092 182 COG4606 CeuB, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 153947388 Common yedY yedY protein YpsIP31758_0395 116 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 153948267 Common - site-specific recombinase, phage integrase family YpsIP31758_0054 108 COG0582 XerC, Integrase DNA replication, recombination, and repair 153947645 Common rbsA2 ribose ABC transporter, ATP-binding protein YpsIP31758_1508 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153950333 Common - ATP-dependent RNA helicase, DEAD/DEAH box family YpsIP31758_2810 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 153948471 Common bioA adenosylmethionine-8-amino-7-oxononanoate transaminase YpsIP31758_2845 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 153950064 Pathogen - putative lipoprotein YpsIP31758_0620 6 None None None 153947805 Common rplN ribosomal protein L14 YpsIP31758_3904 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 153947665 Common - ribonuclease BN-like family protein YpsIP31758_4056 38 COG1295 Rbn, Predicted membrane protein Function unknown 153948658 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YpsIP31758_3299 194 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 153947785 Common - AP endonuclease, family 2 YpsIP31758_2968 65 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 153950169 Common modA molybdate ABC transporter, periplasmic molybdate-binding protein YpsIP31758_2850 157 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 153948770 Common tesB acyl-CoA thioesterase II YpsIP31758_3076 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 153950263 Common mreB rod shape-determining protein MreB YpsIP31758_0398 234 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 153950091 Common sdaC serine transporter YpsIP31758_2656 39 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 153947033 Pathogen - hypothetical protein YpsIP31758_3969 2 None None None 153950061 Pathogen - hypothetical protein YpsIP31758_0513 1 None None None 153948478 Pathogen - hypothetical protein YpsIP31758_2685 1 None None None 153948794 Common gcvP glycine dehydrogenase YpsIP31758_0865 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 153949970 Common rplK ribosomal protein L11 YpsIP31758_3864 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 153947181 Common - hypothetical protein YpsIP31758_1328 9 None None None 153947191 Pathogen - hypothetical protein YpsIP31758_3291 1 None None None 153949066 Common - chitin binding domain protein YpsIP31758_3154 24 COG3397 COG3397, Uncharacterized protein conserved in bacteria Function unknown 153950327 Common - transcriptional regulator YpsIP31758_2680 5 COG3710 CadC, DNA-binding winged-HTH domains Transcription 153949215 Common - transporter, major facilitator family YpsIP31758_2050 125 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153950158 Common - nucleoside transporter, NupC family YpsIP31758_3499 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 153948953 Common - 'Cold-shock' DNA-binding domain YpsIP31758_0374 179 COG1278 CspC, Cold shock proteins Transcription 153947113 Common - putative hydroxymethylglutaryl-coenzyme A synthase YpsIP31758_2518 60 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 153950085 Common arnT undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase YpsIP31758_1729 83 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 153950882 Common - PAAR/S-type pyocin domain protein YpsIP31758_0897 12 COG5529 COG5529, Pyocin large subunit General function prediction only 153948600 Common - fimbrial usher protein YpsIP31758_0614 33 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153947814 Common phnH phosphonate metabolism protein PhnH YpsIP31758_3561 34 COG3625 PhnH, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 153947758 Common uspE universal stress protein E YpsIP31758_1832 35 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 153946824 Pathogen - hypothetical protein YpsIP31758_2807 1 None None None 153948777 Common cysB cys regulon transcriptional activator YpsIP31758_1922 188 COG0583 LysR, Transcriptional regulator Transcription 153950252 Common - M23 peptidase domain protein YpsIP31758_0738 9 COG3179 COG3179, Predicted chitinase General function prediction only 153947003 Common - transcriptional regulator, LysR family YpsIP31758_3155 136 COG0583 LysR, Transcriptional regulator Transcription 153950665 Pathogen - hypothetical protein YpsIP31758_3823 1 None None None 153948234 Common rdgB non-canonical purine NTP pyrophosphatase RdgB YpsIP31758_0826 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 153949416 Common - transporter, major facilitator family YpsIP31758_2762 60 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153947359 Common uxuA mannonate dehydratase YpsIP31758_2699 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 153949391 Common - pilus biogenesis protein YpsIP31758_3736 22 None None None 153946986 Common deoA thymidine phosphorylase YpsIP31758_3497 118 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 153950373 Common yfeB chelated iron ABC transporter, ATP-binding protein YfeB YpsIP31758_1704 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 153950772 Common fabA beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YpsIP31758_2546 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 153949261 Common add adenosine deaminase YpsIP31758_1878 107 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 153948998 Common - sensory box histidine kinase YpsIP31758_2821 223 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 153946867 Common nudH (di)nucleoside polyphosphate hydrolase YpsIP31758_0981 118 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 153948904 Pathogen - PilM protein YpsIP31758_3735 4 None None None 153948416 Common - hypothetical protein YpsIP31758_0324 11 None None None 153948991 Pathogen - hypothetical protein YpsIP31758_0176 1 None None None 153948683 Common - Rhs element Vgr protein YpsIP31758_2504 50 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153947312 Common - fliB family protein YpsIP31758_1231 9 None None None 153949005 Common ureC urease, alpha subunit YpsIP31758_1079 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 153949443 Common slyA transcriptional regulator SlyA YpsIP31758_1767 103 COG1846 MarR, Transcriptional regulators Transcription 153948588 Common terA tellurite resistance protein YpsIP31758_3788 25 COG4110 COG4110, Uncharacterized protein involved in stress response General function prediction only 153947358 Common - hypothetical protein YpsIP31758_1181 4 None None None 153950834 Common ribH 6,7-dimethyl-8-ribityllumazine synthase YpsIP31758_3116 229 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 153949477 Common - phospholipase, patatin family YpsIP31758_1656 11 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 153949450 Common - hypothetical protein YpsIP31758_1542 25 COG1795 COG1795, Uncharacterized conserved protein Function unknown 153949620 Common cyoB cytochrome o ubiquinol oxidase, subunit I YpsIP31758_3099 165 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 153947483 Common map1 methionine aminopeptidase, type I YpsIP31758_1012 248 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 153950901 Common vacJ lipoprotein VacJ YpsIP31758_1396 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 153949586 Common - glycosyl transferase domain protein YpsIP31758_1487 81 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 153949705 Common - rieske 2Fe-2S domain protein YpsIP31758_1516 89 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 153948048 Pathogen - plasmid stabilization system protein, RelE/ParE family YpsIP31758_2238 5 None None None 153947444 Common - hypothetical protein YpsIP31758_2570 10 None None None 153950926 Common - hypothetical protein YpsIP31758_4104 9 None None None 153947588 Common - glycerophosphoryl diester phosphodiesterase family protein YpsIP31758_3158 68 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 153950308 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2695 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153950031 Common trx thioredoxin YpsIP31758_0179 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 153949018 Common ftsZ cell division protein FtsZ YpsIP31758_3382 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 153949008 Common flgC2 flagellar basal-body rod protein FlgC YpsIP31758_0640 115 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 153949687 Common mltA membrane-bound lytic murein transglycosylase A YpsIP31758_0995 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 153947323 Common - hypothetical protein YpsIP31758_1067 8 None None None 153948178 Common fumC fumarate hydratase, class II YpsIP31758_1873 216 COG0114 FumC, Fumarase Energy production and conversion 153947697 Common rplR ribosomal protein L18 YpsIP31758_3898 214 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 153950411 Common - hypothetical protein YpsIP31758_0085 15 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 153947230 Common - IS1541, transposase YpsIP31758_2877 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949119 Common - carbohydrate kinase, FGGY family YpsIP31758_2691 181 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 153947499 Common flgG2 flagellar basal-body rod protein FlgG YpsIP31758_2319 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 153949378 Common - putative autotransporter protein YpsIP31758_0947 29 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 153947366 Common - integral membrane protein YpsIP31758_1500 61 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 153949680 Common pitA low-affinity inorganic phosphate transporter YpsIP31758_4033 155 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 153948811 Common - cation diffusion facilitator family transporter YpsIP31758_1502 75 COG3965 COG3965, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 153949076 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_1330 135 COG0583 LysR, Transcriptional regulator Transcription 153947959 Common ompX outer membrane protein X YpsIP31758_1501 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 153949644 Common nuoJ NADH-quinone oxidoreductase, J subunit YpsIP31758_1462 35 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 153950254 Common pykA pyruvate kinase II YpsIP31758_2024 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 153948394 Common - putative methyltransferase YpsIP31758_3144 24 COG3963 COG3963, Phospholipid N-methyltransferase Lipid metabolism 153947600 Common flhB1 flagellar biosynthetic protein FlhB YpsIP31758_2334 129 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 153947847 Common livM high-affinity branched-chain amino acid ABC transporter, permease protein YpsIP31758_0246 139 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 153947963 Common - hypothetical protein YpsIP31758_0236 8 None None None 153946886 Common - carbohydrate uptake (CUT2 family) ABC transporter, ATP-binding protein YpsIP31758_0365 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153947714 Common secM secretion monitor protein SecM YpsIP31758_3379 11 None None None 153949236 Common - hypothetical protein YpsIP31758_0267 44 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 153948560 Common secF protein-export membrane protein SecF YpsIP31758_3120 218 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 153950118 Common - phage antitermination protein Q YpsIP31758_2239 6 None None None 153947081 Common - putative ATPase Mrp YpsIP31758_2454 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 153948622 Common galM galactose mutarotase YpsIP31758_2858 89 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 153950038 Pathogen - hypothetical protein YpsIP31758_1358 2 None None None 153947216 Common - RNA methyltransferase, TrmH family, group 1 YpsIP31758_1166 157 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 153949191 Common deoC2 deoxyribose-phosphate aldolase YpsIP31758_2652 138 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 153949808 Common cyoD cytochrome o ubiquinol oxidase, subunit IV YpsIP31758_3101 58 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 153949124 Common - aminotransferase, class V YpsIP31758_3186 150 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 153948103 Common rpmB ribosomal protein L28 YpsIP31758_0062 162 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 153946862 Common araC arabinose operon regulatory protein YpsIP31758_1882 120 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153949593 Common - quaternary amine uptake ABC transporter (QAT) family, permease protein YpsIP31758_2785 136 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 153949534 Common actP cation/acetate symporter ActP YpsIP31758_3837 178 COG4147 DhlC, Predicted symporter General function prediction only 153946906 Common rbfA ribosome-binding factor A YpsIP31758_3595 158 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 153949167 Common - kinase, pfkB family YpsIP31758_2306 179 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 153947523 Common recG ATP-dependent DNA helicase RecG YpsIP31758_0037 210 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 153948762 Common - metallo-beta-lactamase family protein YpsIP31758_0968 28 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 153947922 Common rbsA4 ribose ABC transporter, ATP-binding protein YpsIP31758_2972 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153947753 Common - IS1541, transposase YpsIP31758_1725 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947955 Common terZ tellurium resistance protein YpsIP31758_3789 28 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 153947148 Common - hypothetical protein YpsIP31758_1660 10 None None None 153947902 Common fliF2 flagellar M-ring protein FliF YpsIP31758_0631 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 153947504 Common - hypothetical protein YpsIP31758_2724 14 COG5519 COG5519, Superfamily II helicase and inactivated derivatives DNA replication, recombination, and repair 153947609 Common potG putrescine ABC transporter, ATP-binding protein YpsIP31758_2644 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 153947783 Common - putative insecticidal toxin complex protein YpsIP31758_0414 19 None None None 153948258 Common - tail sheath protein YpsIP31758_2187 36 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 153947273 Common zur zinc uptake regulation protein YpsIP31758_3769 127 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 153949199 Pathogen - hypothetical protein YpsIP31758_3130 1 None None None 153947567 Common - putative tellurium resistance protein YpsIP31758_0506 23 COG4245 TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain General function prediction only 153950767 Pathogen - hypothetical protein YpsIP31758_3410 1 None None None 153947326 Pathogen - putative biofilm PGA synthesis protein PgaD YpsIP31758_2128 1 None None None 153949301 Common - saccharopine dehydrogenase YpsIP31758_0685 7 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 153947296 Common - sugar ABC transporter, periplasmic sugar-binding protein YpsIP31758_0812 100 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949851 Common - hypothetical protein YpsIP31758_0314 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 153950777 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_2818 170 COG0583 LysR, Transcriptional regulator Transcription 153947370 Pathogen - hypothetical protein YpsIP31758_0612 1 None None None 153950700 Pathogen leuL leucine operon leader peptide YpsIP31758_3404 1 None None None 153950753 Common rpoD RNA polymerase sigma factor RpoD YpsIP31758_0553 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 153950810 Common - ABC transporter, permease protein YpsIP31758_2138 168 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 153948528 Common - hypothetical protein YpsIP31758_1736 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 153949600 Common dapF diaminopimelate epimerase YpsIP31758_0205 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 153950589 Common - late control gene D protein YpsIP31758_2193 37 COG3500 COG3500, Phage protein D General function prediction only 153949675 Pathogen - hypothetical protein YpsIP31758_0307 1 None None None 153946874 Common - HNH endonuclease domain protein YpsIP31758_2725 9 None None None 153949223 Common pyrG CTP synthase YpsIP31758_3317 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 153949459 Common - glutathione S-transferase domain protein YpsIP31758_0479 79 COG0435 ECM4, Predicted glutathione S-transferase Posttranslational modification, protein turnover, chaperones 153949858 Common - putative methyltransferase YpsIP31758_0238 209 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 153949279 Common fliM flagellar motor switch protein FliM YpsIP31758_2299 109 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 153950525 Pathogen - hypothetical protein YpsIP31758_3968 1 None None None 153948644 Common - hypothetical protein YpsIP31758_4166 55 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 153950069 Common - fibronectin type III domain protein/ chitin binding domain protein YpsIP31758_0610 42 COG3397 COG3397, Uncharacterized protein conserved in bacteria Function unknown 153948212 Common - integral membrane protein, YccS/YhfK family YpsIP31758_3946 49 COG1289 COG1289, Predicted membrane protein Function unknown 153947818 Pathogen - hypothetical protein YpsIP31758_0531 1 None None None 153946820 Common - trp operon repressor YpsIP31758_3482 21 COG2973 TrpR, Trp operon repressor Transcription 153947670 Common - hypothetical protein YpsIP31758_2832 141 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 153949205 Common ugpE glycerol-3-phosphate ABC transporter, permease protein YpsIP31758_0258 149 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 153949022 Common hasE HlyD family hemolysin secretion protein YpsIP31758_0133 119 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153947122 Common - aspartate racemase family protein YpsIP31758_1412 82 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 153949369 Common glyQ glycyl-tRNA synthetase, alpha subunit YpsIP31758_4131 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 153948880 Common - hypothetical protein YpsIP31758_3307 6 COG1724 COG1724, Predicted periplasmic or secreted lipoprotein Cell motility and secretion 153949311 Common - electron transport complex, RnfABCDGE type, E subunit YpsIP31758_1900 76 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 153948244 Common - conserved hypothetical protein TIGR00150 YpsIP31758_3657 206 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 153949563 Common rhaU L-rhamnose 1-epimerase YpsIP31758_3759 40 COG3254 COG3254, Uncharacterized conserved protein Function unknown 153950183 Pathogen - hypothetical protein YpsIP31758_3831 1 None None None 153950570 Common - putative acyl carrier protein YpsIP31758_2513 2 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153950862 Common icd isocitrate dehydrogenase, NADP-dependent YpsIP31758_1615 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 153949176 Common - hypothetical protein YpsIP31758_2403 30 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 153949556 Common - methyl-accepting chemotaxis protein YpsIP31758_2753 125 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153949904 Common eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YpsIP31758_2021 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 153948456 Common - putative anaerobic formate dehydrogenase, iron-sulfur subunit YpsIP31758_3684 214 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 153947074 Common glgC glucose-1-phosphate adenylyltransferase YpsIP31758_4004 174 COG0448 GlgC, ADP-glucose pyrophosphorylase Carbohydrate transport and metabolism 153949893 Common - putative lipoprotein YpsIP31758_1589 12 COG5633 COG5633, Predicted periplasmic lipoprotein General function prediction only 153948008 Common - ABC transporter, ATP-binding protein YpsIP31758_2813 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 153950276 Common - acetyltransferase, GNAT family YpsIP31758_4133 50 COG0456 RimI, Acetyltransferases General function prediction only 153950613 Pathogen - hypothetical protein YpsIP31758_0293 1 None None None 153950439 Pathogen - hypothetical protein YpsIP31758_0311 1 None None None 153949263 Common - hypothetical protein YpsIP31758_2508 18 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 153947338 Common - hypothetical protein YpsIP31758_3570 19 COG3787 COG3787, Uncharacterized protein conserved in bacteria Function unknown 153949833 Common fhuC ferrichrome ABC transporter, ATP-binding protein YpsIP31758_3333 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 153947105 Common rplT ribosomal protein L20 YpsIP31758_1715 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 153949537 Common - hypothetical protein YpsIP31758_2384 8 None None None 153950325 Common recN DNA repair protein RecN YpsIP31758_2889 200 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 153948203 Common yopM outer membrane protein YopM YpsIP31758_0676 8 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 153948181 Common - purine transporter, AzgA family YpsIP31758_4161 135 COG2252 COG2252, Permeases General function prediction only 153947281 Common - putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN YpsIP31758_3567 56 COG3709 COG3709, Uncharacterized component of phosphonate metabolism Inorganic ion transport and metabolism 153949543 Common hflX GTP-binding protein HflX YpsIP31758_3652 223 COG2262 HflX, GTPases General function prediction only 153947166 Common hspQ heat shock protein HspQ YpsIP31758_2532 38 COG3785 COG3785, Uncharacterized conserved protein Function unknown 153947591 Common - putative gram-negative pili assembly chaperone YpsIP31758_3781 8 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153947029 Common - hypothetical protein YpsIP31758_1118 28 COG3819 COG3819, Predicted membrane protein Function unknown 153949959 Common - ABC dipeptide/oligopeptide/nickel transporter, permease protein YpsIP31758_3552 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153947530 Common - site-specific recombinase, phage integrase family YpsIP31758_0884 120 COG0582 XerC, Integrase DNA replication, recombination, and repair 153948173 Common - hypothetical protein YpsIP31758_0285 131 COG1739 COG1739, Uncharacterized conserved protein Function unknown 153949925 Common - cyclic diguanylate phosphodiesterase (EAL) domain protein YpsIP31758_4059 98 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 153950675 Pathogen - hypothetical protein YpsIP31758_2975 1 None None None 153949517 Common pagP antimicrobial peptide resistance/lipid A acylation protein YpsIP31758_2380 14 None None None 153950531 Pathogen - hypothetical protein YpsIP31758_1918 1 None None None 153947909 Common tfoX DNA transformation protein tfoX YpsIP31758_2539 27 COG3070 TfoX, Regulator of competence-specific genes Transcription 153946901 Common - iron-sulfur cluster-binding protein YpsIP31758_3660 134 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 153948489 Common - NAD-dependent epimerase/dehydratase family protein YpsIP31758_2622 122 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153950853 Pathogen - hypothetical protein YpsIP31758_1513 1 None None None 153947409 Pathogen - hypothetical protein YpsIP31758_1107 1 None None None 153949486 Common - putative oxygen-independent coproporphyrinogen III oxidase YpsIP31758_0825 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 153950907 Common tolQ protein TolQ YpsIP31758_2871 147 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 153950281 Common - hypothetical protein YpsIP31758_1000 63 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 153947930 Common pepP Xaa-Pro aminopeptidase YpsIP31758_0860 243 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 153949251 Common thiD phosphomethylpyrimidine kinase YpsIP31758_1203 219 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 153949188 Common - hypothetical protein YpsIP31758_2202 12 None None None 153950575 Common sdaA L-serine ammonia-lyase YpsIP31758_2355 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 153950268 Common - ImpE family protein YpsIP31758_1377 23 COG4455 ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion General function prediction only 153950077 Common - membrane protein, MarC family YpsIP31758_4015 154 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 153948814 Common - hypothetical protein YpsIP31758_3072 10 None None None 153947418 Pathogen - hypothetical protein YpsIP31758_1376 2 None None None 153949885 Common - surface antigen/outer membrane protein, OMP85 family YpsIP31758_1021 161 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 153948131 Common - hypothetical protein YpsIP31758_2726 2 None None None 153947421 Pathogen - hypothetical protein YpsIP31758_3105 1 None None None 153948406 Common - oxidoreductase, Gfo/Idh/MocA family protein YpsIP31758_1881 179 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153950454 Common - gram-negative pili assembly chaperone YpsIP31758_1679 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153948432 Common nhaB Na+/H+ antiporter NhaB YpsIP31758_2000 26 COG3067 NhaB, Na+/H+ antiporter Inorganic ion transport and metabolism 153949274 Common - replicative DNA helicase YpsIP31758_2244 215 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 153950022 Common - hypothetical protein YpsIP31758_3887 17 COG3036 COG3036, Uncharacterized protein conserved in bacteria Function unknown 153949131 Common - putative helicase YpsIP31758_2719 142 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 153947390 Common zwf glucose-6-phosphate 1-dehydrogenase YpsIP31758_2022 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 153948834 Common htpG chaperone protein HtpG YpsIP31758_3055 151 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 153947825 Common - sulfatase family protein YpsIP31758_2723 39 COG3083 COG3083, Predicted hydrolase of alkaline phosphatase superfamily General function prediction only 153948425 Common - hypothetical protein YpsIP31758_0794 6 None None None 153949112 Common cheY chemotaxis protein CheY YpsIP31758_1646 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153949962 Common - hypothetical protein YpsIP31758_0502 55 COG3247 HdeD, Uncharacterized conserved protein Function unknown 153948198 Pathogen - hypothetical protein YpsIP31758_1467 1 None None None 153948289 Pathogen - hypothetical protein YpsIP31758_3725 1 None None None 153947099 Pathogen - hypothetical protein YpsIP31758_4139 1 None None None 153948319 Pathogen - hypothetical protein YpsIP31758_0949 1 None None None 153948738 Common - prevent-host-death family protein YpsIP31758_3738 14 COG4118 Phd, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 153950497 Common - hypothetical protein YpsIP31758_3423 47 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 153950393 Common pepQ Xaa-Pro dipeptidase YpsIP31758_0284 116 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 153947185 Pathogen - hypothetical protein YpsIP31758_1261 1 None None None 153950847 Common - putative ABC transporter, ATP-binding protein YrbF YpsIP31758_0448 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 153950240 Common - hypothetical protein YpsIP31758_1006 32 COG3098 COG3098, Uncharacterized protein conserved in bacteria Function unknown 153948789 Common yntD nickel ABC transporter, ATP-binding protein YpsIP31758_1074 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 153949879 Common - hypothetical protein YpsIP31758_3929 23 COG3529 COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain General function prediction only 153947942 Common - IS285, transposase YpsIP31758_0291 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 153948514 Common gspK general secretion pathway protein K YpsIP31758_0959 10 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 153949751 Common rbsB3 ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_1853 110 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153950890 Pathogen - hypothetical protein YpsIP31758_3712 2 None None None 153949870 Common hcr NADH oxidoreductase Hcr YpsIP31758_2618 126 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 153950285 Common - Rhs element Vgr protein YpsIP31758_0788 50 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153949609 Common - quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein YpsIP31758_2786 90 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 153947264 Common csrA carbon storage regulator YpsIP31758_3237 81 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 153949654 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase YpsIP31758_0059 181 COG0756 Dut, dUTPase Nucleotide transport and metabolism 153950515 Common pstB2 phosphate ABC transporter, ATP-binding protein YpsIP31758_1230 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 153949164 Pathogen - hypothetical protein YpsIP31758_3342 1 None None None 153947516 Pathogen - hypothetical protein YpsIP31758_2605 1 None None None 153950721 Common - hypothetical protein YpsIP31758_0340 6 COG5435 COG5435, Uncharacterized conserved protein Function unknown 153946965 Common - integral membrane protein YpsIP31758_1859 148 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 153948716 Pathogen - hypothetical protein YpsIP31758_2801 4 None None None 153949734 Common rsuA ribosomal small subunit pseudouridine synthase A YpsIP31758_2718 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 153948145 Common fghA S-formylglutathione hydrolase YpsIP31758_2474 96 COG0627 COG0627, Predicted esterase General function prediction only 153948742 Common - hypothetical protein YpsIP31758_0575 27 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 153948844 Common - transporter, gluconate:H+ symporter (GntP) family YpsIP31758_4051 33 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 153946839 Common pflA pyruvate formate-lyase 1-activating enzyme YpsIP31758_2591 96 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 153948331 Common seqA protein SeqA YpsIP31758_1098 23 COG3057 SeqA, Negative regulator of replication initiationR DNA replication, recombination, and repair 153948167 Pathogen - hypothetical protein YpsIP31758_1178 1 None None None 153950715 Common proX glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein YpsIP31758_1059 63 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 153948294 Pathogen - fimbrial assembly protein PilN YpsIP31758_3970 3 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 153949812 Common rnhA RNase H YpsIP31758_1054 175 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 153949497 Common pcP outer membrane lipoprotein PcP YpsIP31758_0665 17 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 153949129 Common - RbsD/FucU family transport protein YpsIP31758_0348 42 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 153949104 Common fliJ1 flagellar export protein FliJ YpsIP31758_2294 35 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 153950597 Common - hypothetical protein YpsIP31758_2545 111 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 153947880 Common osmY Osmotically induced periplasmic protein OsmY YpsIP31758_3503 88 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 153950236 Common rhaR transcriptional activator RhaR YpsIP31758_3753 118 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 153946957 Common - hypothetical protein YpsIP31758_0593 7 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 153948188 Common holC DNA polymerase III, chi subunit YpsIP31758_3544 50 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 153948845 Common phoQ sensor protein PhoQ YpsIP31758_1607 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153947598 Common fbp fructose-1,6-bisphosphatase YpsIP31758_3621 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 153947127 Common flhB2 flagellar biosynthetic protein FlhB YpsIP31758_0623 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 153950581 Common - hypothetical protein YpsIP31758_4054 7 None None None 153948141 Pathogen pilP1 type IV pilus biogenesis protein PilP YpsIP31758_3732 3 None None None 153947982 Common upp uracil phosphoribosyltransferase YpsIP31758_1235 165 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 153949152 Common fruK 1-phosphofructokinase YpsIP31758_2682 96 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 153947581 Common - hypothetical protein YpsIP31758_1479 23 COG4575 ElaB, Uncharacterized conserved protein Function unknown 153947283 Common sufC FeS assembly ATPase SufC YpsIP31758_1743 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 153948342 Pathogen - hypothetical protein YpsIP31758_1124 1 None None None 153947651 Common - membrane protein, MarC family YpsIP31758_1707 148 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 153950485 Common - hypothetical protein YpsIP31758_1844 15 None None None 153950012 Common kefA potassium efflux system KefA YpsIP31758_3064 221 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 153947120 Common - multidrug resistance protein, SMR family YpsIP31758_1730 13 COG2510 COG2510, Predicted membrane protein Function unknown 153949755 Common - fimbrial usher protein YpsIP31758_4106 31 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153949526 Common copC copper resistance protein CopC YpsIP31758_2339 52 COG2372 CopC, Uncharacterized protein, homolog of Cu resistance protein CopC General function prediction only 153947658 Common dcuB anaerobic C4-dicarboxylate transporter dcuB YpsIP31758_3222 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 153949618 Common - hypothetical protein YpsIP31758_1111 47 COG3272 COG3272, Uncharacterized conserved protein Function unknown 153948926 Common queC queuosine biosynthesis protein QueC YpsIP31758_3085 175 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 153948863 Common dnaB2 replicative DNA helicase YpsIP31758_3747 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 153950430 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YpsIP31758_3457 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 153947435 Common dnaE DNA polymerase III, alpha subunit YpsIP31758_1028 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 153950004 Common - integral membrane protein YpsIP31758_2779 113 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 153950474 Common treC alpha,alpha-phosphotrehalase YpsIP31758_0430 169 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 153946941 Common - putative VgrG protein YpsIP31758_0696 59 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153946816 Common - enoyl-CoA hydratase/isomerase family protein YpsIP31758_2517 138 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 153950247 Pathogen - hypothetical protein YpsIP31758_1892 1 None None None 153950413 Common - ABC transporter, ATP-binding protein YpsIP31758_2136 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153948472 Common ppc phosphoenolpyruvate carboxylase YpsIP31758_0125 119 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 153949145 Common flgJ flagellar rod assembly protein/muramidase FlgJ YpsIP31758_2316 72 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 153950741 Common - transcriptional regulator, GntR family YpsIP31758_1217 213 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 153948724 Common - ABC transporter, permease protein YpsIP31758_2713 214 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 153947715 Common mukB chromosome partition protein MukB YpsIP31758_2565 20 COG3096 MukB, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 153950272 Pathogen - hypothetical protein YpsIP31758_1435 1 None None None 153949740 Common - thiazolinyl imide reductase family protein YpsIP31758_0686 15 COG4693 PchG, Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 153950781 Common dsrB DsrB protein YpsIP31758_1630 10 None None None 153949462 Pathogen - hypothetical protein YpsIP31758_4067 1 None None None 153948676 Common pepT2 peptidase T YpsIP31758_1605 60 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 153949408 Common cueO blue copper oxidase CueO YpsIP31758_3352 125 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 153950920 Common - hypothetical protein YpsIP31758_2212 8 COG3617 COG3617, Prophage antirepressor Transcription 153947688 Pathogen - hypothetical protein YpsIP31758_2083 1 None None None 153950400 Pathogen - hypothetical protein YpsIP31758_2608 1 None None None 153950502 Common - DNA-binding protein YpsIP31758_3588 16 COG1476 COG1476, Predicted transcriptional regulators Transcription 153948383 Common mdh malate dehydrogenase, NAD-dependent YpsIP31758_3616 179 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 153948583 Common - hypothetical protein YpsIP31758_2995 2 None None None 153947891 Common - acetyltransferase, GNAT family YpsIP31758_0243 13 None None None 153949692 Common - conserved hypothetical protein TIGR00743 YpsIP31758_1398 15 COG3691 COG3691, Uncharacterized protein conserved in bacteria Function unknown 153947407 Common flgG1 flagellar basal-body rod protein FlgG YpsIP31758_0644 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 153950080 Common edd phosphogluconate dehydratase YpsIP31758_1476 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 153948854 Common menC o-succinylbenzoic acid (OSB) synthetase YpsIP31758_1485 69 COG1441 MenC, O-succinylbenzoate synthase Coenzyme metabolism 153949954 Common - putative diguanylate cyclase, GGDEF domain YpsIP31758_3487 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 153949767 Common - type III secretion protein, HrpO family YpsIP31758_3813 23 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 153949185 Common - putative D-arabinitol 4-dehydrogenase YpsIP31758_1812 89 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 153947974 Common - NAD-dependent deacetylase-like protein YpsIP31758_1604 152 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 153948894 Common - conserved hypothetical protein TIGR00370 YpsIP31758_1115 102 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 153947024 Pathogen - hypothetical protein YpsIP31758_0410 1 None None None 153949395 Pathogen - hypothetical protein YpsIP31758_2241 2 None None None 153948698 Common - universal stress protein A YpsIP31758_4035 38 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 153948308 Common - cytochrome b562 YpsIP31758_3255 13 COG3783 CybC, Soluble cytochrome b562 Energy production and conversion 153948875 Common - putative transport protein YpsIP31758_2756 67 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 153948346 Common metK S-adenosylmethionine synthetase YpsIP31758_0841 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 153947773 Common - fimbrial protein YpsIP31758_1675 21 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153949747 Common - class II glutamine amidotransferases domain protein YpsIP31758_3168 75 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 153947201 Common - YciI domain protein YpsIP31758_1947 74 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 153949089 Common tusB tRNA 2-thiouridine synthesizing protein B YpsIP31758_3922 24 COG2168 DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur Inorganic ion transport and metabolism 153948292 Common - hypothetical protein YpsIP31758_2349 19 COG3141 COG3141, Uncharacterized protein conserved in bacteria Function unknown 153947656 Common glpD aerobic glycerol-3-phosphate dehydrogenase YpsIP31758_4000 147 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 153947275 Common - hypothetical protein YpsIP31758_2096 6 None None None 153948265 Common - putative PTS system, Fru family, IIB component YpsIP31758_3532 68 COG1445 FrwB, Phosphotransferase system fructose-specific component IIB Carbohydrate transport and metabolism 153947775 Pathogen - hypothetical protein YpsIP31758_0484 1 None None None 153947701 Common hisD histidinol dehydrogenase YpsIP31758_2429 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 153949024 Common - hypothetical protein YpsIP31758_0703 2 None None None 153946930 Pathogen - hypothetical protein YpsIP31758_2207 2 None None None 153948066 Common - TadE-like family protein YpsIP31758_0595 3 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 153948690 Common purU formyltetrahydrofolate deformylase YpsIP31758_1971 220 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 153948979 Common - response regulator YpsIP31758_1969 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153948899 Pathogen - hypothetical protein YpsIP31758_4123 3 None None None 153947722 Common - cyd operon protein YbgE YpsIP31758_2873 12 COG3790 COG3790, Predicted membrane protein Function unknown 153947452 Common - hypothetical protein YpsIP31758_0904 13 None None None 153948250 Pathogen - hypothetical protein YpsIP31758_0621 1 None None None 153947723 Pathogen - hypothetical protein YpsIP31758_2638 1 None None None 153949968 Common tag DNA-3-methyladenine glycosylase I YpsIP31758_4132 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 153947345 Common tilS tRNA(Ile)-lysidine synthase YpsIP31758_1031 208 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 153950490 Common - ribonucleoside-diphosphate reductase, beta subunit YpsIP31758_2770 155 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 153950058 Common mmsA methylmalonate-semialdehyde dehydrogenase YpsIP31758_2977 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153947800 Common mtlD mannitol-1-phosphate 5-dehydrogenase YpsIP31758_4127 92 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 153949588 Common ftsA cell division protein FtsA YpsIP31758_3383 178 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 153947540 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_0547 144 COG0583 LysR, Transcriptional regulator Transcription 153948055 Common hutG N-formylglutamate amidohydrolase YpsIP31758_2114 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 153946887 Pathogen - hypothetical protein YpsIP31758_3167 1 None None None 153946994 Pathogen - hypothetical protein YpsIP31758_0951 4 COG3710 CadC, DNA-binding winged-HTH domains Transcription 153950042 Common cdsA1 phosphatidate cytidylyltransferase YpsIP31758_1019 216 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 153947648 Common sufD FeS assembly protein SufD YpsIP31758_1744 167 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 153947208 Pathogen - hypothetical protein YpsIP31758_3471 1 None None None 153947481 Common pqiB paraquat-inducible protein B YpsIP31758_2549 66 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 153948550 Common rstB sensor protein RstB YpsIP31758_1825 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153947915 Pathogen - hypothetical protein YpsIP31758_3619 1 None None None 153950654 Common - putative transport protein YidE YpsIP31758_4141 57 COG2985 COG2985, Predicted permease General function prediction only 153949625 Common - hypothetical protein YpsIP31758_2201 7 None None None 153950249 Common - integral membrane protein YpsIP31758_2630 126 COG2510 COG2510, Predicted membrane protein Function unknown 153948634 Common rplC ribosomal protein L3 YpsIP31758_3915 230 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 153947575 Common - xanthine/uracil permease family protein YpsIP31758_0358 136 COG2252 COG2252, Permeases General function prediction only 153948823 Common - hypothetical protein YpsIP31758_3308 34 COG1598 COG1598, Uncharacterized conserved protein Function unknown 153949117 Common - transporter, major facilitator family YpsIP31758_0009 179 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153950385 Pathogen - hypothetical protein YpsIP31758_2704 1 None None None 153948380 Common gpt xanthine phosphoribosyltransferase YpsIP31758_3153 60 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 153950426 Common - transporter, major facilitator family YpsIP31758_1903 145 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153950346 Common - SpoVR family protein YpsIP31758_1998 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 153950051 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_0095 176 COG0583 LysR, Transcriptional regulator Transcription 153948365 Common - putative lipoprotein YpsIP31758_0319 12 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 153948921 Common - metallo-beta-lactamase family protein YpsIP31758_2754 98 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 153949852 Common - hypothetical protein YpsIP31758_2245 12 None None None 153949699 Common - fimbrial family protein YpsIP31758_0616 10 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153947132 Common - hypothetical protein YpsIP31758_1573 53 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 153950842 Common ptrA protease III YpsIP31758_0990 185 COG1025 Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like Posttranslational modification, protein turnover, chaperones 153948614 Pathogen - hypothetical protein YpsIP31758_3109 1 None None None 153949971 Common - RHS/YD repeat protein YpsIP31758_0330 70 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153950885 Pathogen - hypothetical protein YpsIP31758_0869 1 None None None 153949338 Common hpaG1 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit YpsIP31758_2365 153 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 153947545 Common argF ornithine carbamoyltransferase YpsIP31758_3549 239 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 153949347 Pathogen - type III secretion apparatus protein, YscI/HrpB YpsIP31758_3824 1 None None None 153947198 Common - hypothetical protein YpsIP31758_1333 11 None None None 153948151 Pathogen - hypothetical protein YpsIP31758_2527 1 None None None 153948119 Common envZ osmolarity sensor protein EnvZ YpsIP31758_3979 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153947301 Common - baseplate J-like protein YpsIP31758_2733 25 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 153947256 Common holB DNA polymerase III, delta' subunit YpsIP31758_1584 216 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 153948370 Common - aromatic amino acid decarboxylase YpsIP31758_2788 91 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 153948071 Common pyrC dihydroorotase, homodimeric type YpsIP31758_1567 86 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 153947875 Pathogen - hypothetical protein YpsIP31758_2276 1 None None None 153950014 Common - phage transcriptional activator, Ogr/Delta YpsIP31758_2194 13 None None None 153948278 Common ubiX 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YpsIP31758_1427 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 153947426 Common nusA transcription termination factor NusA YpsIP31758_3597 217 COG0195 NusA, Transcription elongation factor Transcription 153950215 Common - hypothetical protein YpsIP31758_3397 13 None None None 153947733 Common agaR transcriptional repressor AgaR YpsIP31758_0943 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 153949213 Pathogen - hypothetical protein YpsIP31758_1626 1 None None None 153946890 Common hupB DNA-binding protein HU-beta YpsIP31758_3089 204 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 153950548 Common truA tRNA pseudouridine synthase A YpsIP31758_1420 235 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 153949777 Common mtnN MTA/SAH nucleosidase YpsIP31758_3325 109 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 153949510 Common - fimbrial usher protein YpsIP31758_1677 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153950462 Pathogen - hypothetical protein YpsIP31758_3722 2 None None None 153950079 Common galU UTP-glucose-1-phosphate uridylyltransferase YpsIP31758_2438 229 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 153950087 Common mobB molybdopterin-guanine dinucleotide biosynthesis protein B YpsIP31758_0016 99 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 153949763 Common - TRAP transporter solute receptor, DctP family YpsIP31758_2399 103 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 153948058 Common serS seryl-tRNA synthetase YpsIP31758_2593 245 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 153947831 Common fliG2 flagellar motor switch protein FliG YpsIP31758_0632 116 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 153950934 Common kup potassium uptake protein YpsIP31758_0006 89 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 153949753 Common - pyridoxal-phosphate dependent enzyme YpsIP31758_3082 212 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 153950456 Common chbR transcriptional regulator ChbR YpsIP31758_1094 51 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153947992 Common - hypothetical protein YpsIP31758_2385 8 None None None 153947558 Common - hypothetical protein YpsIP31758_0561 31 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 153949922 Common uvrC UvrABC system, C protein YpsIP31758_2252 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 153950628 Common tpiA triosephosphate isomerase YpsIP31758_0096 224 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 153948964 Common - glucokinase regulator-like protein YpsIP31758_1143 87 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 153950555 Pathogen - hypothetical protein YpsIP31758_0536 2 None None None 153949325 Common macB macrolide-specific ABC-type efflux carrier protein MacB YpsIP31758_2610 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153947176 Common topA DNA topoisomerase I YpsIP31758_1923 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 153947430 Pathogen - hypothetical protein YpsIP31758_0944 1 None None None 153949159 Common - transcriptional regulator, TetR family YpsIP31758_2811 76 COG1309 AcrR, Transcriptional regulator Transcription 153949426 Common - acetyltransferase, GNAT family /thioesterase domain YpsIP31758_0032 42 COG2153 ElaA, Predicted acyltransferase General function prediction only 153947154 Common phrB deoxyribodipyrimidine photolyase YpsIP31758_1112 135 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 153950124 Common pstB1 phosphate ABC transporter, ATP-binding protein YpsIP31758_4168 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 153950752 Common - putative insecticidal toxin complex protein YpsIP31758_0406 49 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153949253 Pathogen - hypothetical protein YpsIP31758_0799 1 None None None 153950409 Common - ABC dipeptide/oligopeptide/nickel transporter, permease protein YpsIP31758_3553 210 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153948191 Common - pentapeptide repeat protein YpsIP31758_2944 89 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 153950784 Common - antibiotic biosynthesis monooxygenase domain protein YpsIP31758_2964 24 COG1359 COG1359, Uncharacterized conserved protein Function unknown 153948532 Common - proton dependent peptide transporter YpsIP31758_1555 81 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 153949940 Common rbsC3 ribose ABC transporter, permease protein YpsIP31758_1852 135 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153947643 Common metI D-methionine ABC transporter, permease protein YpsIP31758_1042 152 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 153948669 Common rarA replication/recombination-associated protein RarA YpsIP31758_2594 231 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 153948548 Common - hypothetical protein YpsIP31758_0272 25 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 153948324 Common carA carbamoyl-phosphate synthase, small subunit YpsIP31758_3454 235 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 153946897 Common - IS1 family transposase orfA YpsIP31758_0735 13 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947457 Common agaN alpha-galactosidase AgaN YpsIP31758_2395 44 COG3345 GalA, Alpha-galactosidase Carbohydrate transport and metabolism 153947610 Common - NAD-dependent malic enzyme YpsIP31758_2463 195 COG0281 SfcA, Malic enzyme Energy production and conversion 153950706 Common flgI2 flagellar P-ring protein FlgI YpsIP31758_2317 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 153947328 Pathogen - hypothetical protein YpsIP31758_0792 2 None None None 153948526 Common - hypothetical protein YpsIP31758_3013 27 COG2501 COG2501, Uncharacterized conserved protein Function unknown 153949661 Pathogen - hypothetical protein YpsIP31758_0174 1 None None None 153950692 Common - hypothetical protein YpsIP31758_1985 27 COG3139 COG3139, Uncharacterized protein conserved in bacteria Function unknown 153948660 Common - hypothetical protein YpsIP31758_3576 6 None None None 153949548 Common btuE vitamin B12 transport periplasmic protein BtuE YpsIP31758_1721 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 153949068 Common - hypothetical protein YpsIP31758_1407 144 COG0730 COG0730, Predicted permeases General function prediction only 153947751 Common clpV1 type VI secretion ATPase, ClpV1 family YpsIP31758_0732 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153948126 Common - hypothetical protein YpsIP31758_1198 24 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153950418 Common - hypothetical protein YpsIP31758_3941 29 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 153950203 Common cls cardiolipin synthetase YpsIP31758_1953 152 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 153949611 Common - peptidase, M23 family YpsIP31758_2026 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 153949541 Common - IS630 family transposase YpsIP31758_0769 16 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947111 Common - HAD hydrolase, IA family YpsIP31758_1697 181 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 153949335 Pathogen - hypothetical protein YpsIP31758_2637 1 None None None 153949710 Common - oxidoreductase, FAD/FMN-binding YpsIP31758_2819 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 153948117 Common - hypothetical protein YpsIP31758_1779 23 COG4950 COG4950, Uncharacterized protein conserved in bacteria Function unknown 153947521 Common - transporter, auxin efflux carrier family YpsIP31758_1191 77 COG0679 COG0679, Predicted permeases General function prediction only 153948094 Common aroP1 aromatic amino acid transport protein AroP YpsIP31758_2381 156 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153950156 Common gph2 phosphoglycolate phosphatase, bacterial YpsIP31758_3961 199 COG0546 Gph, Predicted phosphatases General function prediction only 153949178 Common - M23 peptidase domain protein YpsIP31758_0734 10 COG3179 COG3179, Predicted chitinase General function prediction only 153948080 Common - hypothetical protein YpsIP31758_2240 11 None None None 153949561 Common cafA ribonuclease G YpsIP31758_0402 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 153950424 Common - hypothetical protein YpsIP31758_3707 21 None None None 153949418 Common rplL ribosomal protein L7/L12 YpsIP31758_3861 215 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 153947999 Common - putative acyl-CoA synthetase YpsIP31758_3206 149 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 153947100 Common - hypothetical protein YpsIP31758_0329 8 COG5435 COG5435, Uncharacterized conserved protein Function unknown 153947803 Common - hypothetical protein YpsIP31758_3533 5 None None None 153946822 Common fliG1 flagellar motor switch protein FliG YpsIP31758_2291 124 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 153949411 Common glpC anaerobic glycerol-3-phosphate dehydrogenase, C subunit YpsIP31758_0229 179 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 153950795 Common - hypothetical protein YpsIP31758_1978 8 None None None 153950135 Pathogen - hypothetical protein YpsIP31758_2116 1 None None None 153949945 Common - ABC maltose/maltodextrin transporter, permease subunit YpsIP31758_0916 168 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 153947076 Common rnr ribonuclease R YpsIP31758_3646 200 COG0557 VacB, Exoribonuclease R Transcription 153948955 Common glpE thiosulfate sulfurtransferase GlpE YpsIP31758_3995 127 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 153947660 Common csiE stationary phase inducible protein CsiE YpsIP31758_1161 13 COG3711 BglG, Transcriptional antiterminator Transcription 153948232 Common tauA taurine ABC transporter, periplasmic taurine-binding protein YpsIP31758_3938 97 COG4521 TauA, ABC-type taurine transport system, periplasmic component Inorganic ion transport and metabolism 153947830 Common - hypothetical protein YpsIP31758_3003 62 COG2267 PldB, Lysophospholipase Lipid metabolism 153949977 Common pcp pyroglutamyl-peptidase I YpsIP31758_1120 57 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 153948882 Pathogen - hypothetical protein YpsIP31758_3071 2 None None None 153949501 Common - hypothetical protein YpsIP31758_1408 31 COG3101 COG3101, Uncharacterized protein conserved in bacteria Function unknown 153950181 Pathogen - hypothetical protein YpsIP31758_2088 1 None None None 153950875 Common rpsS ribosomal protein S19 YpsIP31758_3911 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 153949041 Pathogen - hypothetical protein YpsIP31758_1180 1 None None None 153950819 Common - putative formate transporter FocA YpsIP31758_2588 92 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 153949043 Pathogen - hypothetical protein YpsIP31758_2092 2 None None None 153949423 Common fhuB ferrichrome ABC transporter, permease protein YpsIP31758_3331 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 153950647 Common - phage-associated protein, HI1409 family YpsIP31758_2224 20 COG3567 COG3567, Uncharacterized protein conserved in bacteria Function unknown 153949435 Common napD NapD protein YpsIP31758_1272 21 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 153948205 Common ftsB cell division protein FtsB YpsIP31758_3300 61 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 153947858 Common - hypothetical protein YpsIP31758_1836 14 None None None 153947237 Common aaeB p-hydroxybenzoic acid efflux pump subunit AaeB YpsIP31758_0421 46 COG1289 COG1289, Predicted membrane protein Function unknown 153950622 Common clpP ATP-dependent Clp protease, proteolytic subunit ClpP YpsIP31758_3092 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 153949003 Common fucO lactaldehyde reductase YpsIP31758_3758 176 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 153946917 Common modC molybdate ABC transporter, ATP-binding protein YpsIP31758_2848 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 153946988 Common - oxidoreductase, NAD-binding YpsIP31758_2173 184 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153948493 Common rlpB rare lipoprotein B YpsIP31758_2927 33 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 153947035 Common - oxidoreductase, Gfo/Idh/MocA family YpsIP31758_2970 165 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153947669 Common cysG1 siroheme synthase YpsIP31758_3959 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 153950631 Common - amino acid permease family protein YpsIP31758_2421 170 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 153948443 Common - tetratricopeptide repeat protein YpsIP31758_1257 21 None None None 153947302 Common fliK1 flagellar hook-length control protein YpsIP31758_2295 34 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 153950214 Common - ABC transporter, ATP-binding protein YpsIP31758_0525 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153950678 Common hpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase YpsIP31758_2362 25 COG3384 COG3384, Uncharacterized conserved protein Function unknown 153950142 Pathogen - hypothetical protein YpsIP31758_0609 1 None None None 153947793 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase YpsIP31758_3872 196 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 153950802 Common rbsB6 ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_4028 102 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949051 Pathogen - hypothetical protein YpsIP31758_3314 1 None None None 153948039 Common wrbA flavoprotein WrbA YpsIP31758_2261 111 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 153950194 Common - hypothetical protein YpsIP31758_3780 2 None None None 153948336 Common - hypothetical protein YpsIP31758_2759 49 COG3558 COG3558, Uncharacterized protein conserved in bacteria Function unknown 153949038 Common - hypothetical protein YpsIP31758_0835 129 COG1678 COG1678, Putative transcriptional regulator Transcription 153950607 Common - OmpA domain protein YpsIP31758_0781 139 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153948399 Common cobO cob(I)alamin adenosyltransferase YpsIP31758_1927 142 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 153949638 Common - glycosyl transferase, group 2 family protein YpsIP31758_3038 172 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 153950020 Common ddhA glucose-1-phosphate cytidylyltransferase YpsIP31758_3051 165 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 153947641 Common gcvA glycine cleavage system transcriptional activator YpsIP31758_0999 186 COG0583 LysR, Transcriptional regulator Transcription 153950226 Common astE succinylglutamate desuccinylase YpsIP31758_2117 24 COG2988 COG2988, Succinylglutamate desuccinylase Amino acid transport and metabolism 153949717 Common - copper-translocating P-type ATPase YpsIP31758_3027 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 153947762 Common - carbohydrate uptake (CUT1 family) ABC transporter, permease protein YpsIP31758_1528 147 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153947183 Pathogen - hypothetical protein YpsIP31758_0254 4 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153948700 Common - PHP domain protein YpsIP31758_1930 121 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 153950798 Common sufE cysteine desulfuration protein SufE YpsIP31758_1746 93 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 153947244 Pathogen - hypothetical protein YpsIP31758_2817 1 None None None 153949572 Common - transcriptional regulator, GntR family YpsIP31758_2122 226 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 153950265 Common - hypothetical protein YpsIP31758_3508 9 None None None 153949843 Common pspB phage shock protein B YpsIP31758_1787 23 None None None 153947619 Common rhaA L-rhamnose isomerase YpsIP31758_3756 23 COG4806 RhaA, L-rhamnose isomerase Carbohydrate transport and metabolism 153948972 Common - putative endoribonuclease L-PSP YpsIP31758_0542 189 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 153948362 Common rbsA6 ribose ABC transporter, ATP-binding protein YpsIP31758_4030 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153948019 Pathogen - hypothetical protein YpsIP31758_0213 1 None None None 153949898 Common rpsP ribosomal protein S16 YpsIP31758_3228 208 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 153950683 Common fbpA iron(III) ABC transporter, permease protein, periplasmic iron(III)-binding protein YpsIP31758_1350 123 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 153948135 Common ureD urease accessory protein UreD YpsIP31758_1083 47 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 153949822 Pathogen - hypothetical protein YpsIP31758_2727 1 None None None 153950172 Pathogen - hypothetical protein YpsIP31758_2456 1 None None None 153949304 Common sstT sodium/serine (threonine) transporter YpsIP31758_0495 142 COG3633 SstT, Na+/serine symporter Amino acid transport and metabolism 153947692 Common - hypothetical protein YpsIP31758_1361 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 153949786 Common - type III secretion system protein, SsaH family YpsIP31758_3825 5 None None None 153949056 Common - cupin family protein YpsIP31758_2988 58 COG2850 COG2850, Uncharacterized conserved protein Function unknown 153949872 Common - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YpsIP31758_3446 99 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 153947945 Common - hypothetical protein YpsIP31758_0777 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 153949281 Common bolA bolA protein YpsIP31758_3094 97 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 153950592 Common dcyD D-cysteine desulfhydrase YpsIP31758_2275 67 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 153947866 Common - aminotransferase, class I and II YpsIP31758_3183 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 153948322 Common - cytochrome b562 YpsIP31758_0428 13 COG3783 CybC, Soluble cytochrome b562 Energy production and conversion 153949248 Common - ribosomal subunit interface protein YpsIP31758_0440 146 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 153950884 Common btuB TonB-dependent vitamin B12 receptor YpsIP31758_0142 126 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 153950599 Common skp chaperone protein Skp YpsIP31758_1022 78 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 153948711 Common - hypothetical protein YpsIP31758_2943 4 None None None 153947047 Common dbpA ATP-independent RNA helicase DbpA YpsIP31758_2350 229 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 153947653 Common - putative lipoprotein YpsIP31758_3704 18 None None None 153947190 Pathogen - hypothetical protein YpsIP31758_2080 4 None None None 153948340 Common maf1 septum formation protein Maf YpsIP31758_1571 187 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 153950648 Common - putative diacylglycerol kinase YpsIP31758_1207 107 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 153949713 Common - putative 6-pyruvoyl tetrahydrobiopterin synthase YpsIP31758_3312 131 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 153950817 Common - bacteriophage Mu tail sheath protein (GpL) YpsIP31758_2741 21 COG4386 COG4386, Mu-like prophage tail sheath protein gpL General function prediction only 153946977 Common dsbD thiol:disulfide interchange protein DsbD YpsIP31758_3681 115 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 153948397 Pathogen - hypothetical protein YpsIP31758_2404 1 None None None 153948113 Common mtlA PTS system, mannitol-specific EIICBA component YpsIP31758_4128 74 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 153948376 Common gpmI 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YpsIP31758_0075 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 153949532 Common glpB anaerobic glycerol-3-phosphate dehydrogenase, B subunit YpsIP31758_0228 32 COG3075 GlpB, Anaerobic glycerol-3-phosphate dehydrogenase Amino acid transport and metabolism 153948005 Common flgD2 basal-body rod modification protein FlgD YpsIP31758_0641 98 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 153950391 Pathogen - hypothetical protein YpsIP31758_0336 3 None None None 153947679 Pathogen - hypothetical protein YpsIP31758_3196 1 None None None 153947969 Common - hypothetical protein YpsIP31758_0313 48 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 153948654 Pathogen - hypothetical protein YpsIP31758_0934 1 None None None 153948361 Common - polysaccharide deacetylase family protein YpsIP31758_2405 110 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 153950728 Common - hypothetical protein YpsIP31758_0517 6 None None None 153950427 Common - hypothetical protein YpsIP31758_3534 32 COG4269 COG4269, Predicted membrane protein Function unknown 153948544 Common hpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component YpsIP31758_2356 92 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 153949373 Pathogen - hypothetical protein YpsIP31758_1514 1 None None None 153947102 Common - ABC transporter, permease protein YpsIP31758_3348 141 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 153949042 Common - Rhs element Vgr protein YpsIP31758_1374 59 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153947682 Common - N-acetylmuramoyl-L-alanine amidase, family 2 YpsIP31758_1649 104 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 153949422 Pathogen - hypothetical protein YpsIP31758_1701 1 None None None 153949284 Common - hypothetical protein YpsIP31758_0315 14 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 153950160 Common terE tellurium resistance protein YpsIP31758_3784 30 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 153947630 Pathogen - hypothetical protein YpsIP31758_1474 1 None None None 153949389 Common sbcB exodeoxyribonuclease I YpsIP31758_2420 51 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 153950348 Common - putative diguanylate cyclase/cyclic diguanylate phosphodiesterase YpsIP31758_4069 166 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 153949071 Common - hypothetical protein YpsIP31758_3435 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 153949689 Common pssA CDP-diacylglycerol--serine O-phosphatidyltransferase YpsIP31758_3207 28 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 153947305 Common gltP glutamate/aspartate symport protein YpsIP31758_3834 160 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 153948237 Common - carbohydrate kinase, FGGY family YpsIP31758_3518 181 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 153950358 Common - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase YpsIP31758_3004 90 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 153948933 Common - hypothetical protein YpsIP31758_2372 67 COG1971 COG1971, Predicted membrane protein Function unknown 153948950 Pathogen - hypothetical protein YpsIP31758_4053 6 None None None 153947863 Common nuoN NADH-quinone oxidoreductase, N subunit YpsIP31758_1466 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 153949306 Pathogen - hypothetical protein YpsIP31758_2330 1 None None None 153949437 Common degQ protease DegQ YpsIP31758_0456 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 153948804 Pathogen - hypothetical protein YpsIP31758_1354 4 COG5435 COG5435, Uncharacterized conserved protein Function unknown 153949779 Common kdpA K+-transporting ATPase, A subunit YpsIP31758_1108 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 153948091 Common hpaB 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component YpsIP31758_2357 49 COG2368 COG2368, Aromatic ring hydroxylase Secondary metabolites biosynthesis, transport, and catabolism 153947137 Common - type IV prepilin peptidase YpsIP31758_0963 139 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 153948924 Common - haemolysin expression modulating protein YpsIP31758_3073 12 None None None 153949574 Common - radical SAM domain protein YpsIP31758_3313 163 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 153950636 Pathogen - hypothetical protein YpsIP31758_0679 1 None None None 153947886 Common - transporter, major facilitator family YpsIP31758_1298 214 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948320 Common - asparate kinase, monofunctional class YpsIP31758_0301 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 153950025 Common hemE uroporphyrinogen decarboxylase YpsIP31758_3849 181 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 153950886 Common rplE ribosomal protein L5 YpsIP31758_3902 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 153949663 Common corC magnesium and cobalt efflux protein CorC YpsIP31758_2918 220 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 153947832 Common - hypothetical protein YpsIP31758_1561 165 COG0628 PerM, Predicted permease General function prediction only 153948352 Common - pyridoxal kinase YpsIP31758_1774 74 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 153949469 Common - putative autotransporter protein YpsIP31758_0522 29 None None None 153950045 Common - putative flagellar protein FlgN YpsIP31758_0636 8 None None None 153949784 Common - polar amino amino acid ABC transporter, PAAT family, permease protein YpsIP31758_4164 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153950660 Common hemH ferrochelatase YpsIP31758_3053 161 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 153948277 Common adk adenylate kinase YpsIP31758_3054 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 153948129 Common pfkA 6-phosphofructokinase YpsIP31758_0089 147 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 153950624 Pathogen - hypothetical protein YpsIP31758_0764 1 None None None 153946954 Common - integral membrane protein YpsIP31758_3357 55 COG2510 COG2510, Predicted membrane protein Function unknown 153950185 Common bioH carboxylesterase bioH YpsIP31758_3988 155 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 153950667 Common - sensor histidine kinase YpsIP31758_1305 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153949545 Common thrB homoserine kinase YpsIP31758_3475 129 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 153950748 Common - oxidoreductase, FAD/FMN-binding YpsIP31758_1762 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 153948023 Pathogen - hypothetical protein YpsIP31758_2599 1 None None None 153947672 Common - amino acid ABC transporter, ATP-binding protein YpsIP31758_2272 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 153949550 Pathogen - hypothetical protein YpsIP31758_0605 5 COG3710 CadC, DNA-binding winged-HTH domains Transcription 153948671 Pathogen - putative lipoprotein YpsIP31758_3424 1 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 153950341 Common - putative intimin YpsIP31758_2416 76 None None None 153947938 Pathogen - hypothetical protein YpsIP31758_0663 1 None None None 153948523 Common - kelch domain protein YpsIP31758_2260 17 COG3055 COG3055, Uncharacterized protein conserved in bacteria Function unknown 153948326 Common gmk guanylate kinase YpsIP31758_0041 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 153948709 Common sucA 2-oxoglutarate dehydrogenase, E1 component YpsIP31758_2881 148 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 153947130 Common - secreted protein YebF YpsIP31758_2347 8 None None None 153946963 Common btuF vitamin B12-binding protein YpsIP31758_3326 153 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 153947766 Common - LamB/YcsF family protein YpsIP31758_1117 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 153949246 Pathogen - hypothetical protein YpsIP31758_2984 1 None None None 153947897 Common - transglycosylase SLT domain protein YpsIP31758_3720 44 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 153950560 Common pspF psp operon transcriptional activator YpsIP31758_1785 168 COG1221 PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain Transcription / Signal transduction mechanisms 153949724 Pathogen - hypothetical protein YpsIP31758_2258 1 None None None 153947117 Pathogen - hypothetical protein YpsIP31758_2657 1 None None None 153948662 Pathogen - hypothetical protein YpsIP31758_2249 2 None None None 153949052 Common recX regulatory protein RecX YpsIP31758_3239 66 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 153950009 Common - sensor histidine kinase YpsIP31758_2763 146 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153950924 Common - hypothetical protein YpsIP31758_0524 14 COG5368 COG5368, Uncharacterized protein conserved in bacteria Function unknown 153950416 Common rpmD ribosomal protein L30 YpsIP31758_3896 156 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 153948474 Common flhD flagellar transcriptional activator FlhD YpsIP31758_1634 27 None None None 153949696 Common pabC aminodeoxychorismate lyase YpsIP31758_1581 120 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 153947005 Common - sugar ABC transporter, periplasmic sugar-binding protein YpsIP31758_0528 56 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153950153 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YpsIP31758_1612 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 153947186 Common - SPFH/band 7 family protein YpsIP31758_3024 217 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 153947649 Common - SIS domain protein YpsIP31758_0369 145 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 153950195 Common moeB molybdopterin synthase sulfurylase MoeB YpsIP31758_2481 215 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 153948061 Common ribA GTP cyclohydrolase II YpsIP31758_1919 194 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 153950611 Common - DTW domain protein YpsIP31758_3205 38 COG3148 COG3148, Uncharacterized conserved protein Function unknown 153947459 Pathogen - hypothetical protein YpsIP31758_2101 2 None None None 153949828 Common - putative threonine ammonia-lyase, catabolic YpsIP31758_4146 221 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 153949156 Common - hypothetical protein YpsIP31758_1174 43 COG2975 COG2975, Uncharacterized protein conserved in bacteria Function unknown 153947075 Common - IS1541, transposase YpsIP31758_3413 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947037 Common barA signal transduction histidine-protein kinase BarA YpsIP31758_3322 222 COG4999 COG4999, Uncharacterized domain of BarA-like signal transduction histidine kinases Signal transduction mechanisms 153949348 Common - hypothetical protein YpsIP31758_1699 13 None None None 153950785 Common purD phosphoribosylamine--glycine ligase YpsIP31758_3844 232 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 153948753 Common - RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YpsIP31758_3585 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153949557 Common msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YpsIP31758_2025 67 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 153948772 Common - tonB domain protein YpsIP31758_0134 51 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 153948384 Common ksgA dimethyladenosine transferase YpsIP31758_3444 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 153947661 Pathogen - hypothetical protein YpsIP31758_1133 2 None None None 153948220 Common - YciI domain protein YpsIP31758_2391 39 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 153948710 Common pspD phage shock protein D YpsIP31758_1789 6 None None None 153949380 Common - hypothetical protein YpsIP31758_2795 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 153947497 Pathogen - hypothetical protein YpsIP31758_0546 1 None None None 153948150 Common sdhB succinate dehydrogenase, iron-sulfur protein YpsIP31758_2882 202 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 153947549 Common ldhA fermentative lactate dehydrogenase YpsIP31758_1808 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 153949006 Common napB periplasmic nitrate reductase, diheme cytochrome c subunit NapB YpsIP31758_1274 41 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 153949133 Common cyaA adenylate cyclase, class I YpsIP31758_0201 25 COG3072 CyaA, Adenylate cyclase Nucleotide transport and metabolism 153950618 Common cysQ 3'(2'),5'-bisphosphate nucleotidase YpsIP31758_3630 175 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 153947463 Common trpE anthranilate synthase component I YpsIP31758_1932 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 153949184 Common papD chaperone protein PapD YpsIP31758_0615 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153946891 Common - hypothetical protein YpsIP31758_1206 10 None None None 153950903 Common - putative spermidine/putrescine ABC transporter, permease protein YpsIP31758_2057 183 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 153948721 Common - ImpA domain protein YpsIP31758_3437 13 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153947229 Common - transcriptional regulator, DeoR family YpsIP31758_3264 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 153949864 Common - glycosyl transferase, group 2 family protein YpsIP31758_0066 125 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 153950190 Common miaB tRNA-I(6)A37 thiotransferase enzyme MiaB YpsIP31758_2915 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 153948227 Common - hypothetical protein YpsIP31758_2094 11 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153947279 Common - type VI secretion system family protein YpsIP31758_0733 53 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153948850 Common - NAD dependent epimerase/dehydratase family protein YpsIP31758_2426 85 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153950553 Common lsrC autoinducer AI-2 ABC transporter, permease protein LsrC YpsIP31758_3522 108 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153948269 Common cysH phosphoadenosine phosphosulfate reductase YpsIP31758_3309 153 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 153949336 Pathogen - hypothetical protein YpsIP31758_3447 2 None None None 153950768 Common nupC nucleoside transporter NupC YpsIP31758_1326 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 153947904 Common - extradiol ring-cleavage dioxygenase family protein YpsIP31758_0570 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 153950213 Common mltB lytic murein transglycosylase B YpsIP31758_1351 106 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 153949991 Common hemC porphobilinogen deaminase YpsIP31758_0198 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 153949693 Common fliN2 flagellar motor switch protein FliN YpsIP31758_0627 112 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 153947993 Common - IS1541, transposase YpsIP31758_3869 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947538 Pathogen - hypothetical protein YpsIP31758_0351 1 None None None 153949413 Pathogen - hypothetical protein YpsIP31758_2757 1 None None None 153947087 Pathogen - hypothetical protein YpsIP31758_0618 1 None None None 153947554 Common rpoH alternative sigma factor RpoH YpsIP31758_0242 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 153947735 Common - NAD dependent epimerase/dehydratase family protein YpsIP31758_2103 118 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153949595 Common hemG protoporphyrinogen oxidase YpsIP31758_0287 36 COG4635 HemG, Flavodoxin Energy production and conversion / Coenzyme metabolism 153948389 Pathogen - hypothetical protein YpsIP31758_1241 1 None None None 153949312 Common - hypothetical protein YpsIP31758_0779 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 153949682 Common - phosphocarrier, HPr family YpsIP31758_2683 123 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 153950098 Common - HAD hydrolase, IIB family YpsIP31758_3083 103 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 153948731 Common - type III secretion apparatus H+-transporting two-sector ATPase YpsIP31758_3818 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 153947924 Common - TonB-dependent receptor YpsIP31758_2666 126 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 153948211 Common codA cytosine deaminase YpsIP31758_3955 71 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 153946821 Common - transcriptional regulator, LuxR family YpsIP31758_2960 14 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153949444 Common betT high-affinity choline transport protein YpsIP31758_2828 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 153949799 Common arsC arsenate reductase (glutaredoxin) YpsIP31758_1238 119 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 153950129 Common - rhodanese domain protein YpsIP31758_2078 41 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 153947347 Common - transporter, major facilitator family YpsIP31758_3469 125 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948159 Common - PAAR domain protein YpsIP31758_0797 7 COG4104 COG4104, Uncharacterized conserved protein Function unknown 153948242 Common - heparinase II/III-like family protein YpsIP31758_3577 14 None None None 153948779 Pathogen - hypothetical protein YpsIP31758_1153 1 None None None 153948897 Common ibpB small heat shock protein IbpB YpsIP31758_4142 66 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 153947363 Common - putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein YpsIP31758_2059 18 COG4134 COG4134, ABC-type uncharacterized transport system, periplasmic component General function prediction only 153948883 Pathogen - hypothetical protein YpsIP31758_3420 2 None None None 153950695 Common groL chaperonin GroL YpsIP31758_3675 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 153949488 Common cydA cytochrome d ubiquinol oxidase, subunit I YpsIP31758_2876 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 153950717 Common fhuE FhuE receptor YpsIP31758_2440 102 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 153949844 Common dppF dipeptide ABC transporter, ATP-binding protein DppF YpsIP31758_4071 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 153948272 Common cheR chemotaxis protein methyltransferase YpsIP31758_1644 150 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 153946843 Common uup ABC transporter, ATP-binding protein Uup YpsIP31758_2551 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 153947680 Common - toxin ABC transporter, ATP-binding/permease protein YpsIP31758_1891 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 153948960 Pathogen - hypothetical protein YpsIP31758_3192 1 None None None 153950755 Common - transporter, major facilitator family YpsIP31758_0971 196 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948536 Common - hypothetical protein YpsIP31758_2554 17 None None None 153948249 Common tkrA 2-ketogluconate reductase YpsIP31758_4137 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 153947156 Common - hypothetical protein YpsIP31758_2140 25 COG3470 Tpd, Uncharacterized protein probably involved in high-affinity Fe2+ transport Inorganic ion transport and metabolism 153947709 Common - hypothetical protein YpsIP31758_3301 10 None None None 153950381 Common atpE ATP synthase F0, C subunit YpsIP31758_4181 50 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 153948586 Common - hypothetical protein YpsIP31758_2953 54 COG2921 COG2921, Uncharacterized conserved protein Function unknown 153949040 Common secD protein-export membrane protein SecD YpsIP31758_3121 220 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 153947423 Pathogen - hypothetical protein YpsIP31758_3347 1 None None None 153948790 Common - transport protein, MFP family YpsIP31758_2812 106 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153950908 Common cysE serine O-acetyltransferase YpsIP31758_0080 211 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 153949262 Common - ABC transporter ATP-binding protein YpsIP31758_2478 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153950384 Common - putative lipoprotein YpsIP31758_3706 20 None None None 153949806 Pathogen - hypothetical protein YpsIP31758_1265 1 None None None 153947253 Pathogen - type III secretion system protein YpsIP31758_3817 1 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 153948633 Common - putative carbonic anhydrase YpsIP31758_0950 137 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 153950122 Common ribE riboflavin synthase, alpha subunit YpsIP31758_1751 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 153947779 Common purE phosphoribosylaminoimidazole carboxylase, catalytic subunit YpsIP31758_3017 225 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 153948967 Common gnd 6-phosphogluconate dehydrogenase, decarboxylating YpsIP31758_2436 189 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 153947874 Common - hypothetical protein YpsIP31758_2476 5 None None None 153948574 Common leuA 2-isopropylmalate synthase YpsIP31758_3405 215 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 153948628 Common phoP transcriptional regulatory protein PhoP YpsIP31758_1608 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153950046 Common - transporter, major facilitator family YpsIP31758_3197 91 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948033 Common ispA geranyltranstransferase YpsIP31758_3111 239 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 153950403 Common cysW sulfate/thiosulfate ABC transporter, permease protein CysW YpsIP31758_1301 225 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 153950650 Common artQ arginine ABC transporter, permease protein ArtQ YpsIP31758_2627 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 153948264 Common - hypothetical protein YpsIP31758_1151 10 COG5373 COG5373, Predicted membrane protein Function unknown 153947094 Common mukE chromosome partition protein MukE YpsIP31758_2566 20 COG3095 MukE, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 153947566 Common - putative lipoprotein YpsIP31758_0326 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 153947159 Common - hypothetical protein YpsIP31758_1368 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 153947855 Common - hypothetical protein YpsIP31758_3709 19 None None None 153948556 Common tatC twin arginine-targeting protein translocase TatC YpsIP31758_0276 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 153948552 Common pbpG penicillin-binding protein 7 YpsIP31758_2806 156 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 153950167 Common - hypothetical protein YpsIP31758_2048 41 COG3132 COG3132, Uncharacterized protein conserved in bacteria Function unknown 153947306 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_1616 126 COG1609 PurR, Transcriptional regulators Transcription 153949646 Common - hypothetical protein YpsIP31758_1283 5 None None None 153948054 Common pyrD dihydroorotate oxidase YpsIP31758_2555 230 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 153946828 Pathogen - hypothetical protein YpsIP31758_3177 1 None None None 153948892 Common - ABC transporter, periplasmic substrate-binding protein YpsIP31758_0816 77 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 153946991 Pathogen - hypothetical protein YpsIP31758_3783 2 None None None 153948679 Common - hypothetical protein YpsIP31758_0891 11 COG4679 COG4679, Phage-related protein Function unknown 153950425 Common yccS inner membrane protein YccS YpsIP31758_2538 63 COG1289 COG1289, Predicted membrane protein Function unknown 153947325 Common - peptidyl-prolyl cis-trans isomerase, FKBP-type YpsIP31758_3458 133 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 153950321 Common - IS1541, transposase YpsIP31758_1967 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153950883 Common - hypothetical protein YpsIP31758_2377 181 COG1496 COG1496, Uncharacterized conserved protein Function unknown 153949429 Common - hypothetical protein YpsIP31758_0010 9 COG1609 PurR, Transcriptional regulators Transcription 153949138 Common creC sensor protein CreC YpsIP31758_0876 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153950600 Common lldD L-lactate dehydrogenase (cytochrome) YpsIP31758_2409 130 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 153950052 Common - aminotransferase, classes I and II YpsIP31758_4140 194 COG3977 COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase Amino acid transport and metabolism 153949150 Common manC mannose-1-phosphate guanylyltransferase YpsIP31758_3039 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 153949628 Common - electron transport complex, RnfABCDGE type, A subunit YpsIP31758_1894 76 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 153947772 Common - Sugar fermentation stimulation protein B YpsIP31758_2981 24 COG3423 Nlp, Predicted transcriptional regulator Transcription 153949078 Common - hypothetical protein YpsIP31758_2457 30 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153947914 Common mdtC multidrug resistance protein MdtC YpsIP31758_1213 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153947021 Common cdd cytidine deaminase YpsIP31758_2462 36 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 153949637 Common - IS285, transposase YpsIP31758_0015 87 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949630 Common rarD RarD protein YpsIP31758_0215 112 COG2962 RarD, Predicted permeases General function prediction only 153949746 Common - hypothetical protein YpsIP31758_2228 13 None None None 153947794 Pathogen - hypothetical protein YpsIP31758_0961 1 None None None 153949276 Common fabZ beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YpsIP31758_1024 188 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 153949936 Pathogen - hypothetical protein YpsIP31758_3119 1 None None None 153947171 Common - putative tetrapyrrole methylase YpsIP31758_0476 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 153949460 Common - putative acetyltransferase YpeA, truncation YpsIP31758_1286 20 None None None 153948610 Common - PhoH family protein YpsIP31758_2916 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 153950806 Common uvrA UvrABC system, A protein YpsIP31758_3761 235 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 153949398 Common - endoribonuclease, L-PSP family YpsIP31758_0543 55 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 153949082 Common - hypothetical protein YpsIP31758_2563 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 153947957 Common ftsL cell division protein FtsL YpsIP31758_3394 27 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 153947728 Common manA mannose-6-phosphate isomerase, class I YpsIP31758_1874 42 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 153950467 Common fusA translation elongation factor G YpsIP31758_3919 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 153949372 Common - hypothetical protein YpsIP31758_1324 24 COG3575 COG3575, Uncharacterized protein conserved in bacteria Function unknown 153947392 Common - iojap-related protein YpsIP31758_2947 201 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 153949405 Common - ATPase, AAA family YpsIP31758_3430 214 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153948826 Common - hypothetical protein YpsIP31758_2534 16 COG3110 COG3110, Uncharacterized protein conserved in bacteria Function unknown 153947340 Common - acetyltransferase, GNAT family YpsIP31758_3579 96 COG3153 COG3153, Predicted acetyltransferase General function prediction only 153947542 Common - pilZ family protein YpsIP31758_3148 20 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 153950040 Common rplF ribosomal protein L6 YpsIP31758_3899 233 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 153949997 Common - peptidoglycan amidase MepA YpsIP31758_1406 40 COG3770 MepA, Murein endopeptidase Cell envelope biogenesis, outer membrane 153950825 Common - base excision DNA repair protein, HhH-GPD family YpsIP31758_2288 85 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 153947470 Common - hypothetical protein YpsIP31758_2089 21 None None None 153948442 Common - Dyp-type peroxidase family protein YpsIP31758_1292 52 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 153949774 Common rplV ribosomal protein L22 YpsIP31758_3910 226 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 153947695 Common aceA isocitrate lyase YpsIP31758_0295 128 COG2224 AceA, Isocitrate lyase Energy production and conversion 153947406 Common - hypothetical protein YpsIP31758_1667 19 COG5430 COG5430, Uncharacterized secreted protein Function unknown 153949762 Common - putative hemagglutinin/hemolysin YpsIP31758_4077 29 None None None 153947674 Pathogen - hypothetical protein YpsIP31758_2936 4 None None None 153947953 Common - hypothetical protein YpsIP31758_1797 18 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 153949267 Common - bacteriocin ABC transporter, ATP-binding/permease protein YpsIP31758_0105 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 153948368 Common fliD2 flagellar hook-associated protein 2 YpsIP31758_2283 98 COG1345 FliD, Flagellar capping protein Cell motility and secretion 153950567 Common - hydrophobic amino acid ABC transporter (HAAT) family, permease protein YpsIP31758_2793 87 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 153947700 Common - hypothetical protein YpsIP31758_1801 120 COG0657 Aes, Esterase/lipase Lipid metabolism 153950859 Common prc tail-specific protease YpsIP31758_1672 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 153948974 Common exbB tonB-system energizer ExbB YpsIP31758_0591 125 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 153949115 Common - phosphocarrier, HPr family YpsIP31758_3528 227 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 153950608 Common - LytTr DNA-binding response regulator YpsIP31758_3221 220 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 153948696 Common glnE glutamate-ammonia-ligase adenylyltransferase YpsIP31758_0563 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 153950465 Common fliP1 flagellar biosynthetic protein FliP YpsIP31758_0626 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 153946931 Common znuC high-affinity zinc uptake ABC transporter, ATP-binding protein YpsIP31758_2028 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 153949969 Pathogen - hypothetical protein YpsIP31758_3688 2 None None None 153949766 Common - hypothetical protein YpsIP31758_0778 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 153947376 Common - phage integrase family protein YpsIP31758_2895 87 None None None 153947484 Common tas Tas protein YpsIP31758_0979 198 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 153949973 Common - hypothetical protein YpsIP31758_2722 19 COG3082 COG3082, Uncharacterized protein conserved in bacteria Function unknown 153950840 Common - hypothetical protein YpsIP31758_1924 13 None None None 153950361 Common proA gamma-glutamyl phosphate reductase YpsIP31758_3149 188 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 153949616 Common nqrD NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YpsIP31758_3163 76 COG1347 NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD Energy production and conversion 153950074 Common - amidase, hydantoinase/carbamoylase family YpsIP31758_3185 84 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 153947437 Common cysP sulfate/thiosulfate ABC transporter, periplasmic sulfate/thiosulfate-binding protein YpsIP31758_1299 90 COG4150 CysP, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 153948179 Pathogen - hypothetical protein YpsIP31758_1090 1 None None None 153949794 Common panF sodium/pantothenate symporter YpsIP31758_0389 187 COG4145 PanF, Na+/panthothenate symporter Coenzyme metabolism 153948400 Common - slyX protein YpsIP31758_3927 35 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 153948740 Common phnJ phosphonate metabolism protein PhnJ YpsIP31758_3563 45 COG3627 PhnJ, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 153948916 Pathogen - hypothetical protein YpsIP31758_3517 1 None None None 153950279 Pathogen - hypothetical protein YpsIP31758_2073 1 None None None 153949297 Common - hypothetical protein YpsIP31758_0557 170 COG0344 COG0344, Predicted membrane protein Function unknown 153946961 Common aroP2 aromatic amino acid transport protein AroP YpsIP31758_3366 163 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153950289 Common - hypothetical protein YpsIP31758_2352 16 COG3140 COG3140, Uncharacterized protein conserved in bacteria Function unknown 153947905 Common - hypothetical protein YpsIP31758_3320 4 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 153949735 Common rplP ribosomal protein L16 YpsIP31758_3908 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 153948592 Common - cold-shock DNA-binding domain protein YpsIP31758_2959 9 COG1278 CspC, Cold shock proteins Transcription 153949147 Common - conserved hypothetical protein TIGR00043 YpsIP31758_2917 194 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 153949084 Common ruvC crossover junction endodeoxyribonuclease RuvC YpsIP31758_2032 194 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 153949257 Common fsr fosmidomycin resistance protein YpsIP31758_3033 106 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153946946 Common - hypothetical protein YpsIP31758_1531 3 None None None 153950184 Common ampD N-acetyl-anhydromuramyl-L-alanine amidase YpsIP31758_3368 109 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 153948930 Common ptsI phosphoenolpyruvate-protein phosphotransferase PtsI YpsIP31758_1316 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 153950473 Pathogen - hypothetical protein YpsIP31758_1595 5 None None None 153948860 Common - phosphodiesterase, MJ0936 family YpsIP31758_1434 36 COG0622 COG0622, Predicted phosphoesterase General function prediction only 153948595 Common prs ribose-phosphate pyrophosphokinase YpsIP31758_2070 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 153948477 Common - hypothetical protein YpsIP31758_3719 22 None None None 153950284 Common flgH1 flagellar L-ring protein FlgH YpsIP31758_2318 96 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 153947716 Common dapE succinyl-diaminopimelate desuccinylase YpsIP31758_1255 212 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 153949942 Pathogen - hypothetical protein YpsIP31758_2904 1 None None None 153948355 Common glpR glycerol-3-phosphate regulon repressor YpsIP31758_3997 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 153949163 Pathogen - hypothetical protein YpsIP31758_0704 1 None None None 153949874 Common - dihydroxyacetone kinase family protein YpsIP31758_3286 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 153948418 Common udk uridine kinase YpsIP31758_2453 104 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 153948440 Common - ABC transporter, iron chelate uptake transporter (FeCT) family, ATP-binding protein YpsIP31758_2667 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 153950598 Common - type II secretion system protein F domain protein YpsIP31758_0598 46 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 153950089 Common nadA quinolinate synthetase complex, A subunit YpsIP31758_2865 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 153947522 Common flgB2 flagellar basal-body rod protein FlgB YpsIP31758_2324 98 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 153946943 Common ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YpsIP31758_2914 125 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 153948505 Common - hypothetical protein YpsIP31758_3417 149 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 153949739 Common - ABC transporter, ATP-binding protein YpsIP31758_3932 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 153950724 Common - sensory box-containing diguanylate cyclase YpsIP31758_0666 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 153950458 Common - hydrolase, NUDIX family YpsIP31758_1613 55 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 153948492 Common - pilin accessory protein PilO YpsIP31758_3733 7 None None None 153947178 Common mdtI multidrug resistance protein MdtI YpsIP31758_2019 132 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 153947690 Common pgaC biofilm PGA synthesis N-glycosyltransferase PgaC YpsIP31758_2129 183 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 153950712 Common - hypothetical protein YpsIP31758_1488 11 None None None 153950513 Common - putative cold inducible protein Ves YpsIP31758_2110 38 COG3758 COG3758, Uncharacterized protein conserved in bacteria Function unknown 153950336 Common - hypothetical protein YpsIP31758_3624 83 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 153947966 Common - aldose 1-epimerase YpsIP31758_1989 60 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 153949905 Common fadJ fatty oxidation complex, alpha subunit FadJ YpsIP31758_1400 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 153948846 Common lpp major outer membrane lipoprotein YpsIP31758_1748 19 COG4238 COG4238, Murein lipoprotein Cell envelope biogenesis, outer membrane 153947014 Common mraZ mraZ protein YpsIP31758_3396 143 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 153948849 Common gabD succinate-semialdehyde dehydrogenase (NADP+) YpsIP31758_0422 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153948147 Common fadL long-chain fatty acid transport protein YpsIP31758_1397 82 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 153949527 Common - cation-transporting ATPase, P-type, HAD superfamily, subfamily IC YpsIP31758_3485 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 153947404 Common xapB xanthosine transporter XapB YpsIP31758_2823 54 None None None 153949608 Common - D-alanine--D-alanine ligase YpsIP31758_3385 213 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 153947412 Common purM phosphoribosylformylglycinamidine cyclo-ligase YpsIP31758_1234 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 153947285 Common - hesB-like domain/nifU-like domain protein YpsIP31758_3990 67 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 153950445 Common metF 5,10-methylenetetrahydrofolate reductase YpsIP31758_0123 153 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 153950280 Common - transcriptional regulator, DeoR family YpsIP31758_2145 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 153949516 Common - hypothetical protein YpsIP31758_3743 21 None None None 153947164 Common metH methionine synthase YpsIP31758_0298 178 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 153947935 Common - drug resistance transporter, Bcr/CflA family YpsIP31758_1996 138 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948482 Common fliI2 flagellum-specific ATP synthase YpsIP31758_0634 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 153949493 Common lysA diaminopimelate decarboxylase YpsIP31758_0973 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 153948282 Common hscB Fe-S protein assembly co-chaperone HscB YpsIP31758_1171 56 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 153948127 Common argC N-acetyl-gamma-glutamyl-phosphate reductase YpsIP31758_0127 215 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 153948454 Common - hypothetical protein YpsIP31758_2822 6 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 153950119 Common - ferritin family protein YpsIP31758_2341 84 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 153946958 Common - hydrolase, NUDIX family YpsIP31758_2354 127 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 153947737 Common - ABC dipeptide/oligopeptide/nickel transporter, ATP binding protein YpsIP31758_3555 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 153948515 Common - putative flavodoxin YpsIP31758_1008 74 COG0716 FldA, Flavodoxins Energy production and conversion 153948856 Common rbsC1 ribose ABC transporter, permease protein YpsIP31758_0911 113 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153950504 Common purT phosphoribosylglycinamide formyltransferase 2 YpsIP31758_2351 186 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 153950068 Common - conserved hypothetical protein TIGR01620 YpsIP31758_1791 42 COG3768 COG3768, Predicted membrane protein Function unknown 153949576 Common sspB stringent starvation protein B YpsIP31758_0463 65 COG2969 SspB, Stringent starvation protein B General function prediction only 153949886 Common oppF oligopeptide ABC transporter, ATP-binding protein OppF YpsIP31758_1956 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 153947077 Common - D-alanyl-D-alanine carboxypeptidase YpsIP31758_2659 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 153948797 Common - hypothetical protein YpsIP31758_0371 30 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 153947365 Common rplS ribosomal protein L19 YpsIP31758_3225 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 153950506 Common sucD succinyl-CoA synthetase, alpha subunit YpsIP31758_2878 215 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 153948255 Common sodB superoxide dismutase (Fe) YpsIP31758_1756 206 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 153949091 Common lolA outer membrane lipoprotein carrier protein LolA YpsIP31758_2595 71 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 153947416 Common mtnK 5-methylthioribose kinase YpsIP31758_3178 29 COG4857 COG4857, Predicted kinase General function prediction only 153946952 Common - Elongation factor P-like protein YpsIP31758_2698 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 153949895 Pathogen - hypothetical protein YpsIP31758_2997 1 None None None 153949491 Common tusC tRNA 2-thiouridine synthesizing protein C YpsIP31758_3923 36 COG2923 DsrF, Uncharacterized protein involved in the oxidation of intracellular sulfur Inorganic ion transport and metabolism 153947420 Common thyA thymidylate synthase YpsIP31758_0984 138 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 153950541 Common - putative metal-dependent hydrolase, membrane-bound YpsIP31758_1686 37 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 153947754 Common - hypothetical protein YpsIP31758_1468 26 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 153950111 Common glpA anaerobic glycerol-3-phosphate dehydrogenase, A subunit YpsIP31758_0227 166 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 153949509 Common - N-acetylmuramoyl-L-alanine amidase, family 2 YpsIP31758_1684 105 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 153949964 Common orn oligoribonuclease YpsIP31758_3661 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 153947586 Common - hypothetical protein YpsIP31758_0747 10 None None None 153950538 Common pcp2 outer membrane lipoprotein Pcp YpsIP31758_1769 24 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 153948577 Common kbl 2-amino-3-ketobutyrate coenzyme A ligase YpsIP31758_0071 195 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 153950233 Common thrS threonyl-tRNA synthetase YpsIP31758_1712 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153950144 Pathogen - hypothetical protein YpsIP31758_3778 1 None None None 153949442 Common flhC flagellar transcriptional activator FlhC YpsIP31758_1635 27 None None None 153950363 Common - PAP2 family phosphatase YpsIP31758_3002 26 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 153948545 Pathogen hisL his operon leader peptide YpsIP31758_2427 1 None None None 153947828 Common zitB zinc transporter ZitB YpsIP31758_2863 174 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 153948035 Common thrA bifunctional aspartokinase/homoserine dehydrogenase I YpsIP31758_3476 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 153947510 Common rpsD ribosomal protein S4 YpsIP31758_3891 217 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 153950323 Common pgaB biofilm PGA synthesis lipoprotein PgaB YpsIP31758_2130 80 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 153948170 Common - YeeE/YedE family protein YpsIP31758_3810 61 COG2391 COG2391, Predicted transporter component General function prediction only 153949655 Common glnS glutaminyl-tRNA synthetase YpsIP31758_2907 241 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 153950432 Pathogen - hypothetical protein YpsIP31758_2939 1 None None None 153948439 Common - fumarylacetoacetate hydrolase family protein YpsIP31758_2007 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 153950895 Common fliO flagellar protein fliO YpsIP31758_2301 26 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 153949354 Common rpiA2 ribose 5-phosphate isomerase A YpsIP31758_0855 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 153948310 Common - hypothetical protein YpsIP31758_3195 23 None None None 153948467 Common gcp O-sialoglycoprotein endopeptidase YpsIP31758_0556 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 153947801 Common hupA DNA-binding protein HU-alpha YpsIP31758_3846 207 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 153950854 Common gspF general secretion pathway protein F YpsIP31758_0955 149 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 153949315 Common psd phosphatidylserine decarboxylase YpsIP31758_3663 96 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 153949108 Common - hydrolase, TatD family YpsIP31758_3500 228 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 153947272 Common - ABC dipeptide/oligopeptide/nickel transporter, ATP binding protein YpsIP31758_3554 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 153949836 Common nhaA Na+/H+ antiporter NhaA YpsIP31758_3464 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 153948096 Pathogen - hypothetical protein YpsIP31758_0798 2 None None None 153949947 Common gcvR glycine cleavage system transcriptional repressor YpsIP31758_1246 32 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 153950732 Pathogen - hypothetical protein YpsIP31758_3777 1 None None None 153947782 Common - Alkaline phosphatase family protein YpsIP31758_1764 65 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 153947063 Common hfq RNA chaperone Hfq YpsIP31758_3653 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 153948049 Pathogen - hypothetical protein YpsIP31758_2297 1 None None None 153947222 Common ompF outer membrane protein F YpsIP31758_2559 31 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 153949200 Common xylR xylose operon regulatory protein YpsIP31758_4098 112 COG1609 PurR, Transcriptional regulators Transcription 153948293 Common - sulfatase YpsIP31758_1263 91 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 153947019 Common dsbC thiol:disulfide interchange protein DsbC YpsIP31758_0880 66 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 153947315 Common - putative ribose ABC transporter, permease protein YpsIP31758_2687 112 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153948085 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_1510 128 COG1609 PurR, Transcriptional regulators Transcription 153947123 Common - putative N-acetylmannosamine-6-phosphate epimerase YpsIP31758_1294 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 153948646 Common tgt queuine tRNA-ribosyltransferase YpsIP31758_3123 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 153950248 Common - efflux ABC transporter, RND family, MFP subunit YpsIP31758_1312 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153950292 Common fabG 3-oxoacyl-(acyl-carrier-protein) reductase YpsIP31758_1578 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153948901 Pathogen - hypothetical protein YpsIP31758_2654 1 None None None 153949452 Common - hypothetical protein YpsIP31758_0494 12 None None None 153949801 Common - hypothetical protein YpsIP31758_0551 2 None None None 153947332 Common uvrY response regulator UvrY YpsIP31758_2253 210 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153948043 Common - putative outer membrane protein YpsIP31758_0675 9 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 153950494 Common - peptidyl-tRNA hydrolase domain protein YpsIP31758_1036 119 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 153947611 Common acnA aconitate hydratase 1 YpsIP31758_1920 223 COG1048 AcnA, Aconitase A Energy production and conversion 153949891 Pathogen - hypothetical protein YpsIP31758_0907 2 None None None 153947849 Common rplM ribosomal protein L13 YpsIP31758_0459 238 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 153950888 Pathogen - hypothetical protein YpsIP31758_0886 1 None None None 153949590 Pathogen - hypothetical protein YpsIP31758_0674 1 None None None 153947569 Pathogen - hypothetical protein YpsIP31758_1057 1 None None None 153948867 Common - amidohydrolase, AtzE family YpsIP31758_3194 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 153948688 Common mdtB multidrug resistance protein MdtB YpsIP31758_1214 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153947440 Common - hypothetical protein YpsIP31758_0566 52 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 153948730 Pathogen - hypothetical protein YpsIP31758_1655 1 None None None 153949789 Common - SEC-C motif YpsIP31758_1970 87 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 153949707 Pathogen - hypothetical protein YpsIP31758_0255 1 None None None 153947143 Common ail attachment invasion locus protein YpsIP31758_1160 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 153949912 Common - hypothetical protein YpsIP31758_0433 7 None None None 153949058 Common - hypothetical protein YpsIP31758_1251 28 COG2707 COG2707, Predicted membrane protein Function unknown 153950297 Common - hypothetical protein YpsIP31758_0708 10 COG3934 COG3934, Endo-beta-mannanase Carbohydrate transport and metabolism 153949958 Common kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YpsIP31758_0445 102 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 153947066 Pathogen - hypothetical protein YpsIP31758_3641 1 None None None 153948741 Pathogen - hypothetical protein YpsIP31758_2851 2 None None None 153949853 Pathogen - hypothetical protein YpsIP31758_0464 2 None None None 153949208 Common fadA acetyl-CoA C-acyltransferase FadA YpsIP31758_0282 181 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 153948314 Common xerC tyrosine recombinase XerC YpsIP31758_0207 229 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 153948501 Common - putative transport protein YpsIP31758_2649 57 COG2985 COG2985, Predicted permease General function prediction only 153947602 Common - YecA family protein YpsIP31758_0859 41 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 153950698 Common - PTS system, mannose/fructose/sorbose family, IIB component YpsIP31758_2368 66 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 153950351 Common proY proline-specific permease ProY YpsIP31758_3132 150 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153950318 Pathogen - hypothetical protein YpsIP31758_4083 1 None None None 153949606 Common asd aspartate-semialdehyde dehydrogenase YpsIP31758_4013 194 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 153947951 Pathogen - hypothetical protein YpsIP31758_3257 1 None None None 153947049 Common potI putrescine ABC transporter, permease protein YpsIP31758_2642 202 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 153947495 Common kduI 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YpsIP31758_1694 27 COG3717 KduI, 5-keto 4-deoxyuronate isomerase Carbohydrate transport and metabolism 153948202 Common araD2 L-ribulose-5-phosphate 4-epimerase YpsIP31758_3262 70 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 153949064 Common - rhodanese domain protein YpsIP31758_0076 125 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 153949364 Common - hypothetical protein YpsIP31758_1909 14 COG5460 COG5460, Uncharacterized conserved protein Function unknown 153948651 Common - putative endoribonuclease L-PSP YpsIP31758_0434 186 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 153948567 Pathogen - hypothetical protein YpsIP31758_0717 1 None None None 153947734 Pathogen - hypothetical protein YpsIP31758_2766 1 None None None 153949323 Common lolD lipoprotein releasing system, ATP-binding protein YpsIP31758_1601 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153947396 Common hemB delta-aminolevulinic acid dehydratase YpsIP31758_0278 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 153949072 Common - metallo-beta-lactamase family protein YpsIP31758_2106 31 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 153947383 Common - phosphate-binding protein YpsIP31758_3134 94 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 153949580 Common eco ecotin YpsIP31758_2772 23 COG4574 Eco, Serine protease inhibitor ecotin General function prediction only 153946889 Common - putative phosphoribosyl transferase protein YpsIP31758_4088 59 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 153948106 Pathogen - hypothetical protein YpsIP31758_2860 2 None None None 153949360 Common - putative UTP-glucose-1-phosphate uridylyltransferase YpsIP31758_2437 228 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 153950372 Common sseB sseB protein YpsIP31758_1176 13 None None None 153948218 Common ung uracil-DNA glycosylase YpsIP31758_1121 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 153947432 Pathogen - putative lipoprotein YpsIP31758_0204 2 COG5567 COG5567, Predicted small periplasmic lipoprotein Cell motility and secretion 153949174 Common - YHS domain protein YpsIP31758_2139 17 COG4393 COG4393, Predicted membrane protein Function unknown 153950704 Common - hypothetical protein YpsIP31758_0211 29 COG5441 COG5441, Uncharacterized conserved protein Function unknown 153949252 Common - putative carbohydrate diacid regulator YpsIP31758_4050 40 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 153948405 Pathogen - transcriptional regulator, PerC family YpsIP31758_0776 1 None None None 153947639 Common - hypothetical protein YpsIP31758_0234 12 COG3714 COG3714, Predicted membrane protein Function unknown 153948521 Common - putative BolA protein YpsIP31758_0453 71 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 153949565 Common - AlpA family protein YpsIP31758_0893 38 COG3311 AlpA, Predicted transcriptional regulator Transcription 153948966 Pathogen - hypothetical protein YpsIP31758_2243 2 None None None 153948941 Common putA bifunctional PutA protein YpsIP31758_2268 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 153948810 Common - hypothetical protein YpsIP31758_3702 19 None None None 153949673 Common sapF peptide ABC transporter, ATP-binding protein SapF YpsIP31758_1780 249 COG4167 SapF, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 153949227 Common frr ribosome recycling factor YpsIP31758_1016 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 153948344 Common - hypothetical protein YpsIP31758_3703 27 COG4694 COG4694, Uncharacterized protein conserved in bacteria Function unknown 153948115 Common - hypothetical protein YpsIP31758_2522 2 None None None 153949273 Common rplY ribosomal protein L25 YpsIP31758_2720 125 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 153947212 Common argH argininosuccinate lyase YpsIP31758_0129 224 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 153946925 Common hflB ATP-dependent metallopeptidase HflB YpsIP31758_3602 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 153950640 Common - transcriptional regulator, TetR family YpsIP31758_2760 73 COG1309 AcrR, Transcriptional regulator Transcription 153949805 Pathogen - hypothetical protein YpsIP31758_4134 1 None None None 153948500 Common - hypothetical protein YpsIP31758_0594 7 None None None 153950108 Common - putative fructose-6-phosphate aldolase YpsIP31758_1908 119 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 153949012 Common - transporter, major facilitator family YpsIP31758_0976 99 None None None 153946833 Pathogen - hypothetical protein YpsIP31758_4185 1 None None None 153950256 Common sgrR sugar transport-related sRNA YpsIP31758_3411 77 COG4533 COG4533, ABC-type uncharacterized transport system, periplasmic component General function prediction only 153950379 Common - putative ABC transporter, permease protein YrbE YpsIP31758_0449 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 153949810 Common - hypothetical protein YpsIP31758_3717 20 None None None 153947834 Common - type III secretion apparatus protein, HrpE/YscL family YpsIP31758_3820 4 None None None 153949729 Common fruA PTS system, fructose-specific EIIBC component YpsIP31758_2681 68 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 153947925 Common - metallo-beta-lactamase family protein YpsIP31758_2561 221 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 153947232 Common - CobW/P47K family protein YpsIP31758_2705 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 153947590 Common - hypothetical protein YpsIP31758_0321 41 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 153946863 Common - prepilin-type N-terminal cleavage/methylation domain protein YpsIP31758_0985 10 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 153949221 Pathogen - hypothetical protein YpsIP31758_0898 1 None None None 153948766 Common nuoF NADH-quinone oxidoreductase, F subunit YpsIP31758_1458 166 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 153947352 Pathogen - hypothetical protein YpsIP31758_3007 4 None None None 153947040 Common - YhhW family protein YpsIP31758_0477 98 COG1741 COG1741, Pirin-related protein General function prediction only 153948064 Common - hypothetical protein YpsIP31758_2515 222 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153949474 Common cas1 crispr-associated protein Cas1 YpsIP31758_1535 24 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 153947445 Common - LPS glycosyltransferase family protein YpsIP31758_2590 5 COG3306 COG3306, Glycosyltransferase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 153947821 Common sucC succinyl-CoA synthetase, beta subunit YpsIP31758_2879 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 153948161 Common nagZ beta-hexosaminidase YpsIP31758_1592 174 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 153947743 Common gyrB DNA gyrase, B subunit YpsIP31758_4150 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 153948944 Common lyxK cryptic L-xylulose kinase YpsIP31758_3270 161 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 153950205 Common - deoxyguanosinetriphosphate triphosphohydrolase YpsIP31758_3324 160 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 153948192 Pathogen - hypothetical protein YpsIP31758_3010 1 None None None 153947203 Common rhaS transcriptional activator RhaS YpsIP31758_3754 124 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153947217 Common ompR transcriptional regulatory protein OmpR YpsIP31758_3980 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153948581 Common panC pantoate--beta-alanine ligase YpsIP31758_3344 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 153947447 Pathogen - hypothetical protein YpsIP31758_1287 3 None None None 153947239 Common queF 7-cyano-7-deazaguanine reductase YpsIP31758_1004 82 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 153950227 Common rpsF ribosomal protein S6 YpsIP31758_3639 198 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 153946851 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_1926 234 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153948020 Pathogen - hypothetical protein YpsIP31758_2900 1 None None None 153949821 Common - methyl-accepting chemotaxis protein YpsIP31758_1618 159 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153950586 Common - ferrienterobactin-binding periplasmic protein YpsIP31758_0617 55 COG4592 FepB, ABC-type Fe2+-enterobactin transport system, periplasmic component Inorganic ion transport and metabolism 153950773 Common - sugar ABC transporter, permease protein YpsIP31758_0529 150 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153948187 Common amt ammonium transporter YpsIP31758_3077 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 153950133 Common malE2 maltose ABC transporter, periplasmic maltose-binding protein YpsIP31758_0306 91 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 153949722 Pathogen - hypothetical protein YpsIP31758_1291 1 None None None 153948391 Common dacB D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YpsIP31758_3606 109 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 153949819 Common - ABC transporter , permease protein YpsIP31758_1848 196 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 153947841 Common modF ABC transporter, ATP-binding protein YpsIP31758_2853 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 153948176 Common purK phosphoribosylaminoimidazole carboxylase, ATPase subunit YpsIP31758_3018 192 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 153947028 Common - hypothetical protein YpsIP31758_2632 8 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 153946880 Common resA thiol-disulfide oxidoreductase YpsIP31758_2135 134 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 153950451 Common fliS1 flagellar protein FliS YpsIP31758_0656 61 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 153947840 Common - glycosyl transferase WbyK, group 1 family protein YpsIP31758_3042 186 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 153946929 Common - translocator protein, LysE family YpsIP31758_3452 113 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 153949233 Common - RNA methyltransferase, TrmH family, group 2 YpsIP31758_0081 162 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 153949897 Common nudE ADP compounds hydrolase nudE YpsIP31758_3973 123 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 153948402 Common - hypothetical protein YpsIP31758_3173 29 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 153948496 Common radC DNA repair protein RadC YpsIP31758_0061 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 153949976 Common ada ada regulatory protein YpsIP31758_0082 197 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 153948339 Common - S-adenosylmethionine-dependent methyltransferase SmtA-like protein YpsIP31758_2568 61 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153948350 Common - peptidase, S49 family YpsIP31758_1925 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 153947468 Pathogen - hypothetical protein YpsIP31758_1205 1 None None None 153948606 Common nhaR transcriptional activator protein NhaR YpsIP31758_3463 52 COG0583 LysR, Transcriptional regulator Transcription 153946984 Common - lysozyme YpsIP31758_2206 16 COG4678 COG4678, Muramidase (phage lambda lysozyme) Carbohydrate transport and metabolism 153950057 Pathogen - hypothetical protein YpsIP31758_2502 2 None None None 153947039 Common - hypothetical protein YpsIP31758_3949 76 COG0433 COG0433, Predicted ATPase General function prediction only 153950736 Common - ABC transporter, ATP-binding protein YpsIP31758_3349 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 153947647 Common - putative lipoprotein YpsIP31758_1771 14 COG3895 COG3895, Predicted periplasmic protein General function prediction only 153946893 Pathogen ivbL ilvB operon leader peptide YpsIP31758_1840 1 None None None 153949597 Common - hypothetical protein YpsIP31758_1816 25 COG4679 COG4679, Phage-related protein Function unknown 153947759 Common - DoxX family protein YpsIP31758_0480 48 COG2259 COG2259, Predicted membrane protein Function unknown 153947918 Common argE acetylornithine deacetylase (ArgE) YpsIP31758_0126 194 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 153949698 Common napC periplasmic nitrate reductase, cytochrome c-type protein NapC YpsIP31758_1275 50 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 153949559 Pathogen - hypothetical protein YpsIP31758_2945 1 None None None 153947707 Common purL phosphoribosylformylglycinamidine synthase YpsIP31758_1147 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 153947031 Common - DNA-binding response regulator YpsIP31758_4024 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153950261 Common uppP undecaprenyl-diphosphatase YpsIP31758_0559 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 153949244 Common - fimbrial usher protein YpsIP31758_1365 33 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153949054 Common ffh signal recognition particle protein YpsIP31758_3230 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 153948139 Common - type III secretion protein, HrcV family YpsIP31758_3819 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 153947465 Common - Clp protease-associated protein ClpB YpsIP31758_1362 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153948097 Common - colicin/pyocin immunity family protein YpsIP31758_0164 10 None None None 153949382 Pathogen - hypothetical protein YpsIP31758_0373 1 None None None 153946923 Common - putative aminomethyltransferase YpsIP31758_0872 105 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 153948254 Common - enoyl-CoA hydratase/isomerase family protein YpsIP31758_2516 171 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 153949506 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase YpsIP31758_3392 208 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 153948785 Common ggt gamma-glutamyltransferase YpsIP31758_3128 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 153947663 Common acpS holo-(acyl-carrier-protein) synthase YpsIP31758_1140 164 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 153948209 Common tonB TonB protein YpsIP31758_1946 32 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 153947998 Common - dioxygenase family protein YpsIP31758_0716 34 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 153947799 Common - AlpA family protein YpsIP31758_0052 9 COG3311 AlpA, Predicted transcriptional regulator Transcription 153947764 Common - hypothetical protein YpsIP31758_2017 137 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 153947986 Common - transcriptional regulator, LuxR family YpsIP31758_0720 60 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 153948123 Common - fimbrial usher protein YpsIP31758_2165 35 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153948327 Common rbsA5 ribose ABC transporter, ATP-binding protein YpsIP31758_3251 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153950062 Common - hypothetical protein YpsIP31758_2488 40 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 153950697 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_1855 128 COG1609 PurR, Transcriptional regulators Transcription 153947394 Common - UDP-glucose/GDP-mannose dehydrogenase family protein YpsIP31758_0185 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 153947110 Common fieF cation-efflux pump FieF YpsIP31758_0088 203 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 153948885 Common dtd D-tyrosyl-tRNA(Tyr) deacylase YpsIP31758_0031 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 153947115 Common - DNA-binding heavy metal response regulator YpsIP31758_2084 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153950179 Common - hypothetical protein YpsIP31758_3982 214 COG2183 Tex, Transcriptional accessory protein Transcription 153950562 Common pyrF orotidine 5'-phosphate decarboxylase YpsIP31758_1913 171 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 153950448 Common sdhA succinate dehydrogenase, flavoprotein subunit YpsIP31758_2883 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 153948774 Common - putative periplasmic beta-glucosidase YpsIP31758_0532 129 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 153950793 Common - hypothetical protein YpsIP31758_2510 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 153947188 Pathogen - hypothetical protein YpsIP31758_3274 1 None None None 153947780 Common argD acetylornithine/succinyldiaminopimelate aminotransferase YpsIP31758_3947 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 153950486 Pathogen - hypothetical protein YpsIP31758_1860 1 None None None 153948919 Common - hypothetical protein YpsIP31758_1163 29 COG3683 COG3683, ABC-type uncharacterized transport system, periplasmic component General function prediction only 153949125 Common fhuD ferrichrome ABC transporter, periplasmic ferrichrome-binding protein YpsIP31758_3332 41 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 153947613 Common - iron permease, FTR1 family YpsIP31758_2141 79 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 153947556 Common cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase YpsIP31758_3631 127 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 153950585 Common - aminotransferase, class I and II YpsIP31758_1450 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 153948003 Common int integrase YpsIP31758_2946 42 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 153949341 Common - hypothetical protein YpsIP31758_1842 14 COG4458 SrfC, Uncharacterized protein conserved in bacteria, putative virulence factor Function unknown 153949782 Common bioD2 dethiobiotin synthase YpsIP31758_2841 158 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 153948111 Common yacG zinc-binding protein YacG YpsIP31758_3376 56 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 153950536 Pathogen - hypothetical protein YpsIP31758_2673 1 None None None 153947240 Common sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YpsIP31758_2880 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 153949047 Common yntA nickel ABC transporter, periplasmic nickel-binding protein YpsIP31758_1071 206 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 153950594 Common - peptidase, M24 family YpsIP31758_2132 181 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 153948149 Common modE transcriptional regulator ModE YpsIP31758_2852 62 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 153948563 Common pilF type IV pilus biogenesis/stability protein PilW YpsIP31758_1184 55 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 153947503 Common - transcriptional regulator YpsIP31758_0758 8 COG2378 COG2378, Predicted transcriptional regulator Transcription 153950162 Common rpsL ribosomal protein S12 YpsIP31758_3921 242 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 153949032 Common ugpC glycerol-3-phosphate ABC transporter, ATP-binding protein YpsIP31758_0259 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153949044 Pathogen - hypothetical protein YpsIP31758_0520 4 None None None 153950338 Common - hypothetical protein YpsIP31758_4046 12 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 153947065 Common malM maltose operon periplasmic protein YpsIP31758_0310 17 None None None 153948908 Common gloA lactoylglutathione lyase YpsIP31758_1760 129 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 153950000 Common - transporter, major facilitator family YpsIP31758_1680 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948717 Common lgt prolipoprotein diacylglyceryl transferase YpsIP31758_0983 209 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 153950911 Common - RNA methyltransferase, TrmH family YpsIP31758_3203 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 153947911 Common - hypothetical protein YpsIP31758_0043 125 COG2860 COG2860, Predicted membrane protein Function unknown 153949375 Pathogen - hypothetical protein YpsIP31758_1888 1 None None None 153948359 Common pilA type IV pilin PilA YpsIP31758_3370 64 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 153949286 Common flgI1 flagellar P-ring protein FlgI YpsIP31758_0646 104 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 153949665 Common - peptidase M15 family YpsIP31758_0412 13 None None None 153950178 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase YpsIP31758_0067 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 153949439 Common tyrR transcriptional regulatory protein TyrR YpsIP31758_1794 173 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 153947684 Common - hypothetical protein YpsIP31758_0853 79 COG2968 COG2968, Uncharacterized conserved protein Function unknown 153948673 Common - putative protein transport protein HofB YpsIP31758_3371 217 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 153947719 Common - colicin/pyocin immunity family protein YpsIP31758_0165 8 None None None 153946835 Common pepB peptidase B YpsIP31758_1175 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 153948378 Common - hypothetical protein YpsIP31758_2641 9 None None None 153950050 Pathogen - hypothetical protein YpsIP31758_1845 1 None None None 153947869 Common ilvB1 acetolactate synthase, large subunit, biosynthetic type YpsIP31758_3401 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 153947043 Common efp translation elongation factor P YpsIP31758_3672 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 153950634 Common napA periplasmic nitrate reductase, large subunit YpsIP31758_1273 184 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 153950684 Common agaZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit YpsIP31758_0942 35 COG4573 GatZ, Predicted tagatose 6-phosphate kinase Carbohydrate transport and metabolism 153947195 Common - hypothetical protein YpsIP31758_2941 14 COG2369 COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 Function unknown 153950187 Common fadD long-chain-fatty-acid--CoA ligase YpsIP31758_2014 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153950828 Pathogen - hypothetical protein YpsIP31758_0921 1 None None None 153950843 Common lipB lipoyltransferase YpsIP31758_2954 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 153948612 Common - Amino acid permease family protein YpsIP31758_4084 187 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153948558 Pathogen - hypothetical protein YpsIP31758_2217 1 None None None 153950151 Common cyoC cytochrome o ubiquinol oxidase, subunit III YpsIP31758_3100 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 153949744 Common nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit YpsIP31758_3161 160 COG2871 NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF Energy production and conversion 153949096 Common flgL1 flagellar hook-associated protein 3 YpsIP31758_2313 101 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 153950543 Common - putative phage terminase, small subunit YpsIP31758_0046 6 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 153950662 Common hflK HflK protein YpsIP31758_3651 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 153947931 Common - NAD dependent epimerase/dehydratase family protein YpsIP31758_1902 158 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153948068 Common pal peptidoglycan-associated lipoprotein YpsIP31758_2867 148 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153949467 Common nuoCD NADH-quinone oxidoreductase, C/D subunit YpsIP31758_1456 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 153950104 Pathogen - hypothetical protein YpsIP31758_1267 1 None None None 153947637 Common aaeA p-hydroxybenzoic acid efflux pump subunit AaeA YpsIP31758_0420 155 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153950470 Common - hypothetical protein YpsIP31758_0731 32 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153950131 Common - hypothetical protein YpsIP31758_2493 4 None None None 153950331 Common sbcD nuclease SbcCD, D subunit YpsIP31758_3138 98 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 153950639 Common motB1 chemotaxis MotB protein YpsIP31758_1637 114 COG1360 MotB, Flagellar motor protein Cell motility and secretion 153948279 Common hisG ATP phosphoribosyltransferase YpsIP31758_2428 200 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 153948182 Common - putative lipoprotein YpsIP31758_3642 9 None None None 153948756 Common - Na+/H+ antiporter YpsIP31758_0359 108 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 153947861 Common ompA outer membrane protein A YpsIP31758_2542 128 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153950626 Pathogen - hypothetical protein YpsIP31758_2267 1 None None None 153948935 Common - hypothetical protein YpsIP31758_3746 23 COG1475 Spo0J, Predicted transcriptional regulators Transcription 153950745 Common ftsE cell division ATP-binding protein FtsE YpsIP31758_0240 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 153947091 Common - polar amino acid ABC transporter, periplasmic amino acid-binding protein YpsIP31758_3279 130 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153950356 Common hemN oxygen-independent coproporphyrinogen III oxidase YpsIP31758_0024 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 153947478 Common pqiA paraquat-inducible protein A YpsIP31758_2550 55 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 153949614 Common - iron chelate ABC transporter, permease protein YpsIP31758_4093 129 COG4605 CeuC, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 153950917 Common ugpA glycerol-3-phosphate ABC transporter, permease protein YpsIP31758_0257 155 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153950189 Common - putative methyltransferase YpsIP31758_2552 158 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 153949211 Common - TRAP transporter, DctM subunit YpsIP31758_2401 135 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 153948195 Common - biotin-dependent carboxylase uncharacterized domain protein YpsIP31758_1116 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 153948870 Common - gram-negative pili assembly chaperone YpsIP31758_0167 25 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153947414 Common - type I site-specific deoxyribonuclease, HsdR family YpsIP31758_3538 129 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 153947012 Common - hypothetical protein YpsIP31758_0858 44 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 153948976 Common radA DNA repair protein radA YpsIP31758_3492 215 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 153950138 Common nagE PTS system, N-acetylglucosamine-specific IIBC component YpsIP31758_2908 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 153949648 Pathogen - hypothetical protein YpsIP31758_2211 1 None None None 153947378 Pathogen - hypothetical protein YpsIP31758_2962 1 None None None 153946996 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_3403 144 COG0583 LysR, Transcriptional regulator Transcription 153949944 Common - inner membrane protein OxaA YpsIP31758_4157 215 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 153948859 Common - PAP2 family protein YpsIP31758_1917 35 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 153948641 Common - hypothetical protein YpsIP31758_0518 5 None None None 153947135 Common hisC histidinol-phosphate aminotransferase YpsIP31758_2430 231 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 153949775 Common togN oligogalacturonide ABC tansporter, permease protein YpsIP31758_1690 164 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 153947854 Common - carbohydrate uptake (CUT1 family) ABC transporter, permease protein YpsIP31758_2170 193 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 153946911 Common rbsC7 ribose ABC transporter, permease protein YpsIP31758_4029 113 COG4158 COG4158, Predicted ABC-type sugar transport system, permease component General function prediction only 153947007 Common - putative pyochelin synthetase YpsIP31758_0684 213 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 153949709 Common - hypothetical protein YpsIP31758_0795 38 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 153949027 Common - site-specific recombinase, phage integrase family YpsIP31758_2250 36 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 153947725 Common mutL DNA mismatch repair protein MutL YpsIP31758_3655 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 153947770 Common - thioesterase family protein YpsIP31758_1945 134 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 153950275 Common rplI ribosomal protein L9 YpsIP31758_3636 212 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 153947977 Common glnA glutamine synthetase, type I YpsIP31758_0027 227 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 153949938 Pathogen - hypothetical protein YpsIP31758_3581 1 None None None 153947362 Common - transporter, small conductance mechanosensitive ion channel (MscS) family YpsIP31758_1534 57 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 153949798 Common - haemagglutinin/adhesin repeat protein YpsIP31758_1519 85 COG3210 FhaB, Large exoproteins involved in heme utilization or adhesion Intracellular trafficking and secretion 153950569 Common hldE bifunctional protein HldE YpsIP31758_0564 163 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 153949990 Common fliY cystine-binding periplasmic protein FliY YpsIP31758_2274 191 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153946883 Pathogen - hypothetical protein YpsIP31758_2671 1 None None None 153947596 Pathogen - hypothetical protein YpsIP31758_2229 4 None None None 153950460 Common - hypothetical protein YpsIP31758_0728 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 153947810 Common - dienelactone hydrolase family protein YpsIP31758_0265 121 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 153948639 Common - hypothetical protein YpsIP31758_0977 9 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 153949826 Common arsB arsenical pump membrane protein YpsIP31758_3282 113 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 153947584 Common - type I secretion outer membrane protein, TolC family YpsIP31758_0573 132 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153947976 Pathogen - hypothetical protein YpsIP31758_3030 1 None None None 153949404 Common - mgtC family protein YpsIP31758_1805 120 COG1285 SapB, Uncharacterized membrane protein Function unknown 153947486 Pathogen - hypothetical protein YpsIP31758_1572 1 None None None 153950054 Common - alcohol dehydrogenase, iron-containing YpsIP31758_2422 63 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 153950602 Common nuoI NADH-quinone oxidoreductase, I subunit YpsIP31758_1461 192 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 153949260 Pathogen - putative enterobacterial membrane protein YpsIP31758_4042 5 None None None 153948914 Common - transporter, divalent anion:Na+ symporter (DASS) family YpsIP31758_0092 94 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 153947617 Pathogen - hypothetical protein YpsIP31758_2331 1 None None None 153946826 Common - heptosyltransferase family protein YpsIP31758_3934 62 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 153949094 Pathogen - hypothetical protein YpsIP31758_2739 1 None None None 153947224 Common ndh NADH dehydrogenase YpsIP31758_1594 204 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 153948828 Common - opacity-associated protein A family YpsIP31758_3634 15 COG3061 OapA, Cell envelope opacity-associated protein A Cell envelope biogenesis, outer membrane 153946937 Common ccmB heme exporter protein CcmB YpsIP31758_1388 81 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 153950146 Common - YD/RHS repeat protein YpsIP31758_0341 71 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153946998 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, permease protein YpsIP31758_2307 113 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153948554 Common clcA H(+)/Cl(-) exchange transporter ClcA YpsIP31758_3329 158 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 153950857 Common nfi endonuclease V YpsIP31758_3848 73 COG1515 Nfi, Deoxyinosine 3'endonuclease (endonuclease V) DNA replication, recombination, and repair 153948491 Common - putative protein transport protein HofC YpsIP31758_3372 144 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 153950820 Common - putative flagellar protein lafD YpsIP31758_0657 2 None None None 153947342 Common nadB L-aspartate oxidase YpsIP31758_1128 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 153946968 Common - hypothetical protein YpsIP31758_3548 23 COG3076 COG3076, Uncharacterized protein conserved in bacteria Function unknown 153948694 Pathogen - hypothetical protein YpsIP31758_3263 1 None None None 153949530 Common nagK N-acetylglucosamine kinase YpsIP31758_1603 130 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 153950551 Common asnB asparagine synthase B, glutamine-hydrolyzing YpsIP31758_2913 156 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 153948088 Common ackA acetate kinase YpsIP31758_1443 162 COG0282 ackA, Acetate kinase Energy production and conversion 153948143 Common - putative lipoprotein YpsIP31758_3175 49 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 153949334 Pathogen - hypothetical protein YpsIP31758_1557 1 None None None 153948852 Common - HAD hydrolase, IA family YpsIP31758_3236 185 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 153950072 Common mdlA multidrug ABC transporter, permease protein/ATP-binding protein MdlA YpsIP31758_3080 245 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 153948449 Common rpsN ribosomal protein S14 YpsIP31758_3901 207 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 153947995 Common - putative transketolase, C-terminal subunit YpsIP31758_3248 227 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 153948648 Common - putative autotransporter protein YpsIP31758_0499 33 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153949760 Common - putative lipoprotein YpsIP31758_3095 18 COG3056 COG3056, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 153950211 Common - putative insecticidal toxin complex protein YpsIP31758_0415 11 COG5281 COG5281, Phage-related minor tail protein Function unknown 153949949 Common cydB cytochrome d ubiquinol oxidase, subunit II YpsIP31758_2875 155 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 153948877 Common mscL large conductance mechanosensitive channel protein YpsIP31758_3886 141 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 153949845 Common - radical SAM domain protein YpsIP31758_2479 65 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 153948819 Common - type I secretion system ATPase YpsIP31758_1889 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 153950815 Common - invasin YpsIP31758_2329 36 None None None 153948225 Common - IS3 family transposase, orfB YpsIP31758_4044 56 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 153947022 Common - hypothetical protein YpsIP31758_1790 42 COG3106 COG3106, Predicted ATPase General function prediction only 153949004 Common - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YpsIP31758_3181 31 COG4229 COG4229, Predicted enolase-phosphatase Energy production and conversion 153950520 Common - iron-sulfur cluster-binding protein YpsIP31758_1141 104 COG2768 COG2768, Uncharacterized Fe-S center protein General function prediction only 153948013 Common - putative competence protein ComEA YpsIP31758_3087 77 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 153948152 Common - outer membrane protein N YpsIP31758_2778 29 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 153947104 Common trmH tRNA guanosine-2'-O-methyltransferase YpsIP31758_0038 195 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 153948229 Common tyrP tyrosine-specific transport protein YpsIP31758_2774 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 153948387 Common - peptidyl-prolyl cis-trans isomerase, FKBP-type YpsIP31758_3633 142 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 153948597 Common uraA uracil permease YpsIP31758_1236 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 153950084 Common - integral membrane protein YpsIP31758_3610 47 COG2962 RarD, Predicted permeases General function prediction only 153947089 Common aceB malate synthase A YpsIP31758_0294 95 COG2225 AceB, Malate synthase Energy production and conversion 153948155 Common - OB-fold nucleic acid binding domain protein YpsIP31758_1289 26 COG3111 COG3111, Uncharacterized conserved protein Function unknown 153949446 Common - amino acid ABC transporter, permease protein YpsIP31758_3188 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153949415 Pathogen - hypothetical protein YpsIP31758_3244 1 None None None 153947249 Common rbsB1 ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_0909 102 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153946845 Common - hypothetical protein YpsIP31758_1375 22 COG4104 COG4104, Uncharacterized conserved protein Function unknown 153950898 Common - hypothetical protein YpsIP31758_0702 6 None None None 153947428 Common ilvB3 acetolactate synthase, large subunit, biosynthetic type YpsIP31758_0154 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 153947879 Common - fimbrial usher protein YpsIP31758_1663 38 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153949154 Common - esterase, DmpD/TodF/XylF family YpsIP31758_2898 170 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 153949567 Pathogen - hypothetical protein YpsIP31758_3850 1 None None None 153948809 Common - putative aerobic formate dehydrogenase, iron-sulfur subunit YpsIP31758_4118 161 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 153948802 Common - sporulation and cell division repeat protein YpsIP31758_1424 19 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 153950652 Common - hypothetical protein YpsIP31758_1792 28 COG5654 COG5654, Uncharacterized conserved protein Function unknown 153949310 Common rpsR ribosomal protein S18 YpsIP31758_3637 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 153947158 Common - hypothetical protein YpsIP31758_4094 61 COG3943 COG3943, Virulence protein General function prediction only 153948962 Common dapB dihydrodipicolinate reductase YpsIP31758_3455 216 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 153947251 Common - hypothetical protein YpsIP31758_3739 15 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 153950011 Common - baseplate assembly protein W YpsIP31758_2184 28 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 153949173 Pathogen - hypothetical protein YpsIP31758_2382 2 None None None 153948235 Common rimN ribosomal modification protein RimN YpsIP31758_3878 238 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 153950930 Common gshB glutathione synthase YpsIP31758_0836 126 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 153948549 Common pcnB poly(A) polymerase YpsIP31758_3340 208 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 153948626 Common aas 2-acylglycerophosphoethanolamine acyltransferase/acyl-(acyl-carrier-protein) synthetase YpsIP31758_0975 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153947872 Common - ABC transporter, permease protein YpsIP31758_2815 182 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 153947792 Common dmsA anaerobic dimethyl sulfoxide reductase, A subunit YpsIP31758_3261 185 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 153948262 Common grxD monothiol glutaredoxin GrxD YpsIP31758_1758 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 153948747 Common recO DNA repair protein RecO YpsIP31758_1138 93 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 153946918 Common - putative thermostable carboxypeptidase I YpsIP31758_1824 82 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 153947895 Common - hypothetical protein YpsIP31758_2506 32 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153948829 Common - putative monooxygenase, YdhR YpsIP31758_0544 19 None None None 153949331 Common oprM outer membrane protein oprM YpsIP31758_3584 134 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153947369 Common lysS lysyl-tRNA synthetase YpsIP31758_0883 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 153948463 Common gltJ glutamate/aspartate ABC transporter, permease protein GltJ YpsIP31758_2921 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153947806 Pathogen hemP hemin uptake protein YpsIP31758_3800 3 COG4256 HemP, Hemin uptake protein Inorganic ion transport and metabolism 153947092 Common recA protein RecA YpsIP31758_3240 223 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 153948619 Common bioB biotin synthase YpsIP31758_2844 184 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 153950368 Common - carbohydrate uptake ABC transporter-1 (CUT1) family, permease protein YpsIP31758_3573 161 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 153948274 Common pta phosphate acetyltransferase YpsIP31758_1442 171 COG0280 Pta, Phosphotransacetylase Energy production and conversion 153949218 Common lolB outer membrane lipoprotein LolB YpsIP31758_2068 51 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 153947547 Pathogen - hypothetical protein YpsIP31758_3321 1 None None None 153947453 Common thiL thiamine-monophosphate kinase YpsIP31758_3114 191 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 153948572 Common glgX glycogen debranching enzyme GlgX YpsIP31758_4005 134 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 153948631 Common - hypothetical protein YpsIP31758_0486 9 None None None 153949552 Common rnt ribonuclease T YpsIP31758_1759 65 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 153950405 Common - alpha-2-macroglobulin family domain protein YpsIP31758_2979 75 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 153949514 Common rbsA3 ribose ABC transporter, ATP-binding protein YpsIP31758_1851 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153949657 Common - translocator protein, LysE family YpsIP31758_3939 109 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 153950874 Pathogen - hypothetical protein YpsIP31758_1950 1 None None None 153948437 Pathogen - hypothetical protein YpsIP31758_0332 1 COG5435 COG5435, Uncharacterized conserved protein Function unknown 153947162 Common - carbohydrate uptake (CUT1 family) ABC transporter, ATP-binding protein YpsIP31758_1524 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153949250 Common holE DNA polymerase III, theta subunit YpsIP31758_2343 12 None None None 153949578 Pathogen - hypothetical protein YpsIP31758_2002 1 None None None 153948125 Common - ABC transporter, permease protein YpsIP31758_2712 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 153949838 Common pstC1 phosphate ABC transporter, permease protein PstC YpsIP31758_1228 224 COG4590 COG4590, ABC-type uncharacterized transport system, permease component General function prediction only 153950106 Common anmK anhydro-N-acetylmuramic acid kinase YpsIP31758_1770 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 153950027 Pathogen - hypothetical protein YpsIP31758_0460 1 None None None 153948286 Pathogen - hypothetical protein YpsIP31758_0516 1 None None None 153947247 Common hcp hydroxylamine reductase YpsIP31758_2617 74 COG1151 COG1151, 6Fe-6S prismane cluster-containing protein Energy production and conversion 153947335 Common - lytic murein transglycosylase YpsIP31758_2008 105 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 153948316 Common fmt methionyl-tRNA formyltransferase YpsIP31758_3883 217 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 153947900 Common - putative fructose-bisphosphate aldolase YpsIP31758_4026 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 153947812 Common ltaE low-specificity L-threonine aldolase YpsIP31758_2620 91 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 153948216 Common - hypothetical protein YpsIP31758_0487 158 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 153949307 Common - transcriptional regulator, DeoR family YpsIP31758_2653 113 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 153947492 Common rplW ribosomal protein L23 YpsIP31758_3913 219 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 153950082 Common - putative ABC aliphatic sulfonates transporter, ATP-binding subunit YpsIP31758_0356 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 153948817 Common frdD fumarate reductase, D subunit YpsIP31758_3670 21 COG3080 FrdD, Fumarate reductase subunit D Energy production and conversion 153947109 Common trpS tryptophanyl-tRNA synthetase YpsIP31758_3960 236 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153948447 Common - putative anaerobic dimethyl sulfoxide reductase, C subunit YpsIP31758_1342 23 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 153950480 Common - Intracellular growth attenuator family protein YpsIP31758_3974 11 None None None 153947193 Common bioF 8-amino-7-oxononanoate synthase YpsIP31758_2843 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 153947512 Common - hypothetical protein YpsIP31758_2961 9 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 153949888 Common fliQ2 flagellar biosynthetic protein FliQ YpsIP31758_0625 120 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 153948284 Common - ErfK/YbiS/YcfS/YnhG family protein YpsIP31758_1747 85 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 153950852 Pathogen - hypothetical protein YpsIP31758_0377 1 None None None 153949956 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_0478 154 COG0583 LysR, Transcriptional regulator Transcription 153949495 Common - putative transporter, Mg2+ transporter-C (MgtC) family YpsIP31758_1632 121 COG1285 SapB, Uncharacterized membrane protein Function unknown 153948494 Common pepD aminoacyl-histidine dipeptidase YpsIP31758_3156 62 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 153948452 Common rhtC threonine efflux protein RhtC YpsIP31758_0219 121 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 153947071 Common - adenylate cyclase, class IV YpsIP31758_2804 23 COG1437 CyaB, Adenylate cyclase, class 2 (thermophilic) Nucleotide transport and metabolism 153948981 Pathogen - hypothetical protein YpsIP31758_0892 1 None None None 153948685 Common valS valyl-tRNA synthetase YpsIP31758_3545 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153948988 Common - putative acetolactate synthase I, small subunit YpsIP31758_1838 90 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 153948946 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase YpsIP31758_1017 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 153949660 Pathogen - hypothetical protein YpsIP31758_0948 2 None None None 153948602 Pathogen - hypothetical protein YpsIP31758_2499 1 None None None 153949483 Common fliI1 flagellar protein export ATPase FliI YpsIP31758_2293 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 153947173 Common cadA cadmium-translocating P-type ATPase YpsIP31758_0233 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 153949249 Common malK2 maltose ABC transporter, ATP-binding protein YpsIP31758_0308 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 153949500 Common mipA MltA-interacting protein YpsIP31758_1990 38 COG3713 OmpV, Outer membrane protein V Cell envelope biogenesis, outer membrane 153947756 Common - hypothetical protein YpsIP31758_2233 4 COG5475 COG5475, Uncharacterized small protein Function unknown 153948312 Common - putative lipoprotein YpsIP31758_3208 10 COG5544 COG5544, Predicted periplasmic lipoprotein General function prediction only 153948469 Common - ATPase, AAA family YpsIP31758_2505 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153946971 Common - transcriptional regulator YpsIP31758_0964 9 COG3710 CadC, DNA-binding winged-HTH domains Transcription 153948163 Common - hypothetical protein YpsIP31758_1444 23 COG3092 COG3092, Uncharacterized protein conserved in bacteria Function unknown 153950492 Common - putative protease YpsIP31758_1818 23 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 153950299 Common - hypothetical protein YpsIP31758_1322 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 153950708 Pathogen - hypothetical protein YpsIP31758_3448 1 None None None 153949313 Common - putative methyltransferase YpsIP31758_2038 61 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153948781 Common thiG thiazole biosynthesis protein ThiG YpsIP31758_3856 167 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 153948799 Common infC translation initiation factor IF-3 YpsIP31758_1713 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 153948459 Common - acetyltransferase, GNAT family YpsIP31758_3868 28 COG0456 RimI, Acetyltransferases General function prediction only 153948792 Common tyrS tyrosyl-tRNA synthetase YpsIP31758_1773 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153947808 Common - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YpsIP31758_2473 205 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 153947525 Common - alpha/beta hydrolase fold domain protein YpsIP31758_2079 77 COG0657 Aes, Esterase/lipase Lipid metabolism 153950434 Common btuD vitamin B12 import ATP-binding protein BtuD YpsIP31758_1722 247 COG4138 BtuD, ABC-type cobalamin transport system, ATPase component Coenzyme metabolism 153947079 Common aroQ 3-dehydroquinate dehydratase, type II YpsIP31758_0393 169 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 153949540 Common - electron transport complex, RnfABCDGE type, B subunit YpsIP31758_1895 115 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 153949265 Common - hypothetical protein YpsIP31758_2458 19 COG5276 COG5276, Uncharacterized conserved protein Function unknown 153949481 Common zntR Zn(II)-responsive transcriptional regulator YpsIP31758_3888 153 COG0789 SoxR, Predicted transcriptional regulators Transcription 153950713 Common - phosphatidylglycerophosphatase A YpsIP31758_3113 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 153946818 Common - hypothetical protein YpsIP31758_3614 17 None None None 153949106 Common hisM histidine ABC transporter, permease protein HisM YpsIP31758_1430 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 153950264 Common folA dihydrofolate reductase YpsIP31758_3449 148 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 153950893 Common creA creA protein YpsIP31758_3479 57 COG3045 CreA, Uncharacterized protein conserved in bacteria Function unknown 153949865 Common - hypothetical protein YpsIP31758_1611 41 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 153949507 Common nusG transcription termination/antitermination factor NusG YpsIP31758_3865 215 COG0250 NusG, Transcription antiterminator Transcription 153946920 Common - AP endonuclease, family 2 YpsIP31758_0344 13 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 153950489 Common - hypothetical protein YpsIP31758_1962 158 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 153949667 Common pgi glucose-6-phosphate isomerase YpsIP31758_0302 197 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 153950287 Common - putative acyltransferase YpsIP31758_2512 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 153949737 Common - rare lipoprotein A/sporulation and cell division repeat protein YpsIP31758_2951 137 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 153950726 Common - phospholipase A1 YpsIP31758_0217 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 153950423 Pathogen - hypothetical protein YpsIP31758_2966 1 None None None 153946948 Common flgF1 flagellar basal-body rod protein FlgF YpsIP31758_0643 124 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 153947940 Common - Cof-like hydrolase YpsIP31758_4149 142 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 153947372 Pathogen - hypothetical protein YpsIP31758_1242 1 None None None 153949730 Common - transporter, major facilitator family YpsIP31758_2459 122 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 153948727 Common pckA phosphoenolpyruvate carboxykinase (ATP) YpsIP31758_3978 97 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 153947537 Common cpxR1 transcriptional regulatory protein CpxR YpsIP31758_1313 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153948857 Pathogen - hypothetical protein YpsIP31758_2375 1 None None None 153947790 Common - quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein YpsIP31758_2784 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 153950511 Common dppA dipeptide ABC transporter, periplasmic dipeptide-binding protein YpsIP31758_4075 211 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 153948185 Common aguB N-carbamoylputrescine amidohydrolase YpsIP31758_0833 202 COG0388 COG0388, Predicted amidohydrolase General function prediction only 153947797 Pathogen - hypothetical protein YpsIP31758_2573 1 None None None 153947883 Common nsrR nitrite-sensitive repressor NsrR YpsIP31758_3647 158 COG1959 COG1959, Predicted transcriptional regulator Transcription 153948664 Common - hypothetical protein YpsIP31758_2337 11 None None None 153947299 Common - NlpB/DapX family lipoprotein YpsIP31758_1248 22 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 153949931 Common - hypothetical protein YpsIP31758_0109 2 None None None 153947058 Pathogen - hypothetical protein YpsIP31758_0885 2 None None None 153948733 Common cytR transcriptional repressor CytR YpsIP31758_0115 127 COG1609 PurR, Transcriptional regulators Transcription 153949320 Pathogen - hypothetical protein YpsIP31758_2708 1 None None None 153949149 Common xth exodeoxyribonuclease III YpsIP31758_1976 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 153947439 Common pheA P-protein YpsIP31758_3218 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 153949020 Common - transporter, major facilitator family YpsIP31758_1543 94 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153949140 Common tolA protein TolA YpsIP31758_2869 12 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 153949278 Pathogen - putative enterobacterial membrane protein YpsIP31758_1201 6 None None None 153948932 Common araD1 L-ribulose-5-phosphate 4-epimerase YpsIP31758_1910 105 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 153947519 Common speG spermidine N(1)-acetyltransferase YpsIP31758_1232 56 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 153946913 Common - YfbU domain protein YpsIP31758_1445 18 COG3013 COG3013, Uncharacterized conserved protein Function unknown 153947625 Pathogen - hypothetical protein YpsIP31758_2569 1 None None None 153949295 Common cysG2 siroheme synthase YpsIP31758_3305 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 153947379 Common - putative N-acetylgalactosamine-6-phosphate deacetylase YpsIP31758_0936 120 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 153949255 Common atpF ATP synthase F0, B subunit YpsIP31758_4180 151 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 153949134 Common - hypothetical protein YpsIP31758_2392 57 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 153946945 Common idnO gluconate 5-dehydrogenase YpsIP31758_1470 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153947907 Common holA DNA polymerase III, delta subunit YpsIP31758_2928 72 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 153950518 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein YpsIP31758_1475 223 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 153947262 Common flgL2 flagellar hook-associated protein 3 YpsIP31758_0649 78 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 153950688 Common - ABC transporter, ATP-binding protein YpsIP31758_2661 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 153946905 Common - putative molybdopterin biosynthesis mog protein YpsIP31758_3470 185 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 153947318 Common - dinI family protein YpsIP31758_2751 9 None None None 153948848 Common - hypothetical protein YpsIP31758_2270 3 COG4190 COG4190, Predicted transcriptional regulator Transcription 153949671 Common rpsU ribosomal protein S21 YpsIP31758_0555 153 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 153949092 Common - hypothetical protein YpsIP31758_3838 11 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 153949650 Common rimJ ribosomal-protein-alanine acetyltransferase YpsIP31758_2049 98 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 153950414 Common creB transcriptional regulatory protein CreB YpsIP31758_0875 214 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153947083 Common - cupin family protein YpsIP31758_1606 64 COG2850 COG2850, Uncharacterized conserved protein Function unknown 153948353 Common - ribosomal subunit interface protein YpsIP31758_3216 78 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 153947621 Common - hypothetical protein YpsIP31758_2417 22 COG2926 COG2926, Uncharacterized protein conserved in bacteria Function unknown 153949907 Common yfbR 5'-nucleotidase YfbR YpsIP31758_1449 33 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 153947410 Common fliE1 flagellar hook-basal body complex protein (FliE) YpsIP31758_2289 64 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 153948411 Common accB acetyl-CoA carboxylase, biotin carboxyl carrier protein YpsIP31758_0392 194 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 153950788 Common - HNH endonuclease domain protein YpsIP31758_0549 6 None None None 153947287 Pathogen - hypothetical protein YpsIP31758_0467 1 None None None 153947706 Common - hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein YpsIP31758_2791 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 153946966 Common gltA citrate synthase I YpsIP31758_2886 193 COG0372 GltA, Citrate synthase Energy production and conversion 153950208 Common efeU ferrous iron permease EfeU YpsIP31758_2264 88 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 153950673 Pathogen - hypothetical protein YpsIP31758_2196 1 None None None 153947615 Common - transcriptional regulator, TetR family YpsIP31758_0139 41 COG1309 AcrR, Transcriptional regulator Transcription 153949792 Common - hypothetical protein YpsIP31758_1381 9 COG4907 COG4907, Predicted membrane protein Function unknown 153949529 Common - RmuC domain protein YpsIP31758_0270 141 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 153950443 Common - tRNA-dihydrouridine synthase YpsIP31758_2808 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 153949110 Common baeR transcriptional regulatory protein BaeR YpsIP31758_1210 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 153949294 Common - hypothetical protein YpsIP31758_3421 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 153949300 Pathogen - hypothetical protein YpsIP31758_2658 1 None None None 153950229 Common - flagellin YpsIP31758_0653 115 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 153948561 Common ppk polyphosphate kinase YpsIP31758_1227 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 153950201 Common - putative enterotoxin YpsIP31758_0671 4 None None None 153947317 Pathogen - hypothetical protein YpsIP31758_0722 1 None None None 153948395 Common - O-antigen polymerase domain protein YpsIP31758_3515 11 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 153949817 Common - transcriptional regulator, AsnC family YpsIP31758_1625 147 COG1522 Lrp, Transcriptional regulators Transcription 153948423 Pathogen - hypothetical protein YpsIP31758_3146 1 None None None 153948995 Common - hypothetical protein YpsIP31758_3700 22 None None None 153950197 Common acrB acriflavine resistance protein B YpsIP31758_3068 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 153947488 Common metG methionyl-tRNA synthetase YpsIP31758_2455 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153948101 Pathogen - hypothetical protein YpsIP31758_2175 2 None None None 153949127 Common - ABC transporter, periplasmic substrate-binding protein YpsIP31758_1849 10 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 153947968 Common metC2 cystathionine beta-lyase YpsIP31758_3806 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 153948304 Common - hypothetical protein YpsIP31758_1204 2 None None None 153947096 Pathogen - hypothetical protein YpsIP31758_2564 1 None None None 153950231 Pathogen - hypothetical protein YpsIP31758_3290 1 None None None 153950865 Common mtr tryptophan-specific transport protein YpsIP31758_2697 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 153948507 Common - putative glutathionylspermidine synthase YpsIP31758_0571 53 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 153950258 Pathogen - hypothetical protein YpsIP31758_0363 1 None None None 153947449 Common rpsQ ribosomal protein s17 YpsIP31758_3906 234 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 153948594 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_2393 126 COG1609 PurR, Transcriptional regulators Transcription 153950508 Common hinT histidine triad nucleotide-binding protein HinT YpsIP31758_1588 225 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 153950377 Common ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase YpsIP31758_0567 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 153948617 Common - hypothetical protein YpsIP31758_0748 8 None None None 153949113 Common proQ ProP effector YpsIP31758_1671 30 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 153949383 Common rnc ribonuclease III YpsIP31758_1136 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 153950758 Common fabB 3-oxoacyl-(acyl-carrier-protein) synthase I YpsIP31758_1411 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153948296 Common - HAD hydrolase YfhB YpsIP31758_1144 11 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 153948099 Common potC spermidine/putrescine ABC transporter, permease protein YpsIP31758_1220 194 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 153946950 Common - transporter, major facilitator family YpsIP31758_2414 98 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153949014 Common - hypothetical protein YpsIP31758_2166 10 None None None 153950928 Pathogen - hypothetical protein YpsIP31758_1562 1 None None None 153947718 Common - hypothetical protein YpsIP31758_2236 7 COG3772 COG3772, Phage-related lysozyme (muraminidase) General function prediction only 153947988 Pathogen - hypothetical protein YpsIP31758_2498 1 None None None 153946850 Common - hypothetical protein YpsIP31758_1269 9 COG4519 COG4519, Uncharacterized protein conserved in bacteria Function unknown 153949919 Common - putative protein insertion permease FtsX YpsIP31758_0241 121 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 153948174 Pathogen - hypothetical protein YpsIP31758_1401 1 None None None 153947560 Common - integral membrane protein YpsIP31758_2825 35 None None None 153950245 Common - carbohydrate uptake (CUT1 family) ABC transporter, periplasmic carbohydrate-binding protein YpsIP31758_1527 43 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153948075 Pathogen - hypothetical protein YpsIP31758_0761 1 None None None 153948701 Common - hypothetical protein YpsIP31758_1829 11 None None None 153947234 Common - putative RdoA protein YpsIP31758_0019 50 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 153948517 Common - hypothetical protein YpsIP31758_1384 7 None None None 153949472 Common - conserved hypothetical protein TIGR00250 YpsIP31758_0834 182 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 153950127 Common acnB aconitate hydratase 2 YpsIP31758_3359 218 COG1049 AcnB, Aconitase B Energy production and conversion 153948575 Common malT transcriptional regulator MalT YpsIP31758_3994 88 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 153950864 Common - putative integral membrane protein YpsIP31758_1640 29 COG5373 COG5373, Predicted membrane protein Function unknown 153947745 Common rsmB ribosomal RNA small subunit methyltransferase B YpsIP31758_3884 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 153948022 Pathogen - hypothetical protein YpsIP31758_4112 1 None None None 153950871 Common hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YpsIP31758_2433 215 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 153948407 Common - efflux transporter, RND family, MFP subunit YpsIP31758_0667 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153948259 Common - DNA-binding protein YpsIP31758_0744 27 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 153948891 Common pykF pyruvate kinase I YpsIP31758_1749 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 153949231 Common - putative lipoprotein YpsIP31758_2623 9 None None None 153948808 Common - hypothetical protein YpsIP31758_2386 8 None None None 153946882 Common udp uridine phosphorylase YpsIP31758_0266 100 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 153950032 Common pgaA biofilm PGA synthesis protein pgaA YpsIP31758_2131 19 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 153947205 Common - M23 peptidase domain protein YpsIP31758_2503 9 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 153950277 Common - cytochrome b561 family protein YpsIP31758_1820 91 COG3038 CybB, Cytochrome B561 Energy production and conversion 153950775 Common gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase YpsIP31758_2861 162 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 153950642 Common gcvT glycine cleavage system T protein YpsIP31758_0863 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 153947219 Pathogen - hypothetical protein YpsIP31758_1681 1 None None None 153947050 Common aroL shikimate kinase 2 YpsIP31758_3143 201 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 153947843 Common nagD hydrolase NagD YpsIP31758_2912 107 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 153949001 Common - beta-galactosidase YpsIP31758_0918 39 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 153947823 Common - aminotransferase, class V YpsIP31758_2004 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 153950730 Common - diguanylate cyclase (GGDEF) domain protein YpsIP31758_3509 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 153949202 Common - TDP-4-keto-6-deoxy-D-glucose transaminase YpsIP31758_0189 198 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 153950832 Common - hemolysin activator protein YpsIP31758_0300 51 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 153947354 Common - outer membrane protein N YpsIP31758_2115 30 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 153949631 Common - transcriptional regulator, AraC family YpsIP31758_2286 42 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153948608 Common - ECA biosynthesis protein WzyE YpsIP31758_0192 13 None None None 153946927 Common minC septum site-determining protein MinC YpsIP31758_2010 90 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 153947398 Common - type II/IV secretion system protein YpsIP31758_0599 178 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 153950912 Common - iron chelate ABC transporter, periplasmic iron-binding protein YpsIP31758_4091 79 COG4607 CeuA, ABC-type enterochelin transport system, periplasmic component Inorganic ion transport and metabolism 153947017 Common cca multifunctional CCA protein YpsIP31758_0560 140 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 153948529 Common - hypothetical protein YpsIP31758_2218 9 None None None 153948928 Common trpG anthranilate synthase component II YpsIP31758_1933 227 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 153948947 Common togM oligogalacturonide ABC tansporter, permease protein YpsIP31758_1691 166 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153947434 Common rhlB ATP-dependent RNA helicase RhlB YpsIP31758_0178 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 153947269 Common pheS phenylalanyl-tRNA synthetase, alpha subunit YpsIP31758_1716 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 153948045 Common motA1 chemotaxis protein motA YpsIP31758_1636 115 COG1291 MotA, Flagellar motor component Cell motility and secretion 153948337 Common - hypothetical protein YpsIP31758_3986 10 None None None 153946875 Common appA periplasmic AppA protein YpsIP31758_1622 17 None None None 153947334 Common - conserved hypothetical protein TIGR00044 YpsIP31758_0830 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 153950765 Common - Rhs element Vgr protein YpsIP31758_0328 56 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 153949194 Common dnaK chaperone protein DnaK YpsIP31758_3466 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 153947292 Common agaF PTS system, N-acetylgalactosamine-specific IIA component YpsIP31758_0937 88 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 153949599 Common - N-acetylmuramoyl-L-alanine amidase, family 3 YpsIP31758_0994 178 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 153950120 Common - Fic family protein YpsIP31758_3490 103 COG3177 COG3177, Uncharacterized conserved protein Function unknown 153948865 Common cpxA sensor protein CpxA YpsIP31758_0083 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153948010 Common - endonuclease/exonuclease/phosphatase family protein YpsIP31758_1050 31 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 153948656 Common - fimbrial protein YpsIP31758_1366 14 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153950290 Pathogen - hypothetical protein YpsIP31758_2906 1 None None None 153949454 Pathogen - hypothetical protein YpsIP31758_1049 1 None None None 153948300 Common - putative sensory box-containing diguanylate cyclase YpsIP31758_2374 194 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 153948168 Pathogen - hypothetical protein YpsIP31758_2003 2 None None None 153947068 Common - IS1 family transposase orfB YpsIP31758_0741 15 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 153948653 Common - hypothetical protein YpsIP31758_0482 14 COG5393 COG5393, Predicted membrane protein Function unknown 153948952 Common - glycosyl transferase, group 2 family protein YpsIP31758_3045 23 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 153949362 Common thiC thiamine biosynthesis protein ThiC YpsIP31758_3853 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 153949604 Common - hypothetical protein YpsIP31758_1034 12 None None None 153946857 Common plsB glycerol-3-phosphate acyltransferase YpsIP31758_3772 48 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 153948240 Common - sugar ABC transporter, permease protein YpsIP31758_0814 134 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153949582 Common mtnH manganese transport protein MntH YpsIP31758_1327 108 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 153950113 Common - hydrolase, alpha/beta fold family YpsIP31758_3940 71 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 153948025 Common - siderophore biosynthesis protein, IucA/IucC family YpsIP31758_2445 50 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 153947604 Common - FHA domain protein YpsIP31758_0318 20 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 153950294 Pathogen - hypothetical protein YpsIP31758_0199 1 None None None 153947788 Common - transcriptional regulator, TetR family YpsIP31758_0058 50 COG1309 AcrR, Transcriptional regulator Transcription 153948503 Common - hypothetical protein YpsIP31758_3223 35 COG3137 COG3137, Putative salt-induced outer membrane protein Cell envelope biogenesis, outer membrane 153950370 Common bcsZ endoglucanase YpsIP31758_4070 31 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 153949984 Common mdfA multidrug translocase MdfA YpsIP31758_4110 167 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153949062 Pathogen - hypothetical protein YpsIP31758_1906 1 None None None 153948083 Common surE 5'/3'-nucleotidase SurE YpsIP31758_3296 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 153947508 Common - hypothetical protein YpsIP31758_0873 51 COG2938 COG2938, Uncharacterized conserved protein Function unknown 153949571 Common hemY hemY protein YpsIP31758_0195 51 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 153947385 Common - carbohydrate uptake (CUT2 family) ABC transporter, permease protein YpsIP31758_0366 139 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153947768 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase YpsIP31758_1249 199 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 153949344 Common - putative metal-dependent hydrolase, membrane-bound YpsIP31758_1266 10 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 153949855 Common rbsB4 ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_2973 118 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153950889 Common gspG general secretion pathway protein G YpsIP31758_0956 103 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 153950839 Pathogen - hypothetical protein YpsIP31758_2221 1 None None None 153949918 Common - cold shock DNA-binding domain protein YpsIP31758_0376 179 COG1278 CspC, Cold shock proteins Transcription 153949989 Common degS periplasmic serine peptidase DegS YpsIP31758_0455 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 153947169 Pathogen - hypothetical protein YpsIP31758_3147 2 None None None 153950306 Common ugpB glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate binding protein YpsIP31758_0256 94 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949679 Common guaA GMP synthase YpsIP31758_1196 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 153950739 Common potF putrescine ABC transporter, periplasmic putrescine binding protein YpsIP31758_2645 133 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 153947419 Common tar methyl-accepting chemotaxis protein YpsIP31758_1642 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153947819 Common purA adenylosuccinate synthetase YpsIP31758_3648 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 153947835 Common mviN integral membrane protein MviN YpsIP31758_2046 196 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 153948078 Common uhpB sensor histidine kinase UhpB YpsIP31758_4079 134 COG3851 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific Signal transduction mechanisms 153949366 Common adhE aldehyde-alcohol dehydrogenase YpsIP31758_1963 176 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 153948200 Common yajC preprotein translocase, YajC subunit YpsIP31758_3122 170 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 153948223 Common uxaB altronate oxidoreductase YpsIP31758_0492 84 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 153948247 Common moaE molybdopterin converting factor, subunit 2 YpsIP31758_2833 158 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 153950923 Common asnS asparaginyl-tRNA synthetase YpsIP31758_2558 228 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 153948057 Common - hypothetical protein YpsIP31758_1670 80 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 153949328 Pathogen - hypothetical protein YpsIP31758_0701 1 None None None 153950013 Common aceK isocitrate dehydrogenase kinase/phosphatase YpsIP31758_0296 29 COG4579 COG4579, Isocitrate dehydrogenase kinase/phosphatase Signal transduction mechanisms 153949803 Common folP dihydropteroate synthase YpsIP31758_3601 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 153948332 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_0969 164 COG0583 LysR, Transcriptional regulator Transcription 153949216 Pathogen - hypothetical protein YpsIP31758_0923 1 None None None 153947894 Common - hypothetical protein YpsIP31758_2209 13 None None None 153950498 Common rpsI ribosomal protein S9 YpsIP31758_0461 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 153948963 Common - hypothetical protein YpsIP31758_0047 8 None None None 153950070 Common - iron-sulfur cluster-binding protein, Rieske family YpsIP31758_0844 76 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 153947280 Pathogen - hypothetical protein YpsIP31758_1356 1 None None None 153948245 Common rplX ribosomal protein L24 YpsIP31758_3903 211 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 153947493 Common - IS1 family transposase orfA YpsIP31758_0740 13 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949345 Common - hypothetical protein YpsIP31758_0745 21 COG4679 COG4679, Phage-related protein Function unknown 153950404 Pathogen - hypothetical protein YpsIP31758_0226 1 None None None 153947128 Common cysC adenylylsulfate kinase YpsIP31758_3302 144 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 153949832 Common - putative DamX protein YpsIP31758_3964 20 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 153950580 Pathogen - hypothetical protein YpsIP31758_1662 1 None None None 153948190 Common epd D-erythrose-4-phosphate dehydrogenase YpsIP31758_0848 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 153950935 Common fadR fatty acid metabolism transcriptional regulator FadR YpsIP31758_1999 65 COG2186 FadR, Transcriptional regulators Transcription 153950904 Common rraA regulator of ribonuclease activity A YpsIP31758_0110 64 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 153949704 Common wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YpsIP31758_0182 176 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 153948318 Common - hypothetical protein YpsIP31758_0427 5 None None None 153947927 Common agaW PTS system, N-acetylgalactosamine-specific IIC component YpsIP31758_0939 39 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 153948782 Common trpD anthranilate phosphoribosyltransferase YpsIP31758_1934 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 153948675 Common - conserved hypothetical protein TIGR00251 YpsIP31758_0827 78 COG1872 COG1872, Uncharacterized conserved protein Function unknown 153949417 Pathogen - hypothetical protein YpsIP31758_0338 1 None None None 153947550 Common ureE urease accessory protein UreE YpsIP31758_1080 11 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 153950547 Common - PUA domain protein YpsIP31758_2531 136 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 153949339 Common - putative lipopolysaccharide heptosyltransferase III YpsIP31758_3516 110 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 153949785 Common pldB lysophospholipase L2 YpsIP31758_0221 66 COG2267 PldB, Lysophospholipase Lipid metabolism 153950841 Common - transcriptional regulator, GntR family YpsIP31758_0489 142 COG2186 FadR, Transcriptional regulators Transcription 153947635 Common nuoK NADH-quinone oxidoreductase, K subunit YpsIP31758_1463 168 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 153947309 Common - hypothetical protein YpsIP31758_2572 98 COG2835 COG2835, Uncharacterized conserved protein Function unknown 153950526 Common glk glucokinase YpsIP31758_1332 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 153947436 Common - gram-negative pili assembly chaperone YpsIP31758_0170 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153949171 Common ypsI N-acylhomoserine lactone synthase YpsI YpsIP31758_1546 17 COG3916 LasI, N-acyl-L-homoserine lactone synthetase Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 153949242 Common - hypothetical protein YpsIP31758_2203 3 None None None 153950218 Pathogen - hypothetical protein YpsIP31758_0739 2 None None None 153950576 Common alaS alanyl-tRNA synthetase YpsIP31758_3238 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153948818 Common flhA2 flagellar biosynthesis protein FlhA YpsIP31758_0622 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 153947371 Common rnpA ribonuclease P protein component YpsIP31758_4155 70 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 153948268 Common - chain length determinant family protein YpsIP31758_0183 15 COG3765 WzzB, Chain length determinant protein Cell envelope biogenesis, outer membrane 153947257 Common - hypothetical protein YpsIP31758_2487 15 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 153948758 Common ligA2 DNA ligase, NAD-dependent YpsIP31758_0042 217 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 153946916 Common - hypothetical protein YpsIP31758_3097 8 None None None 153949356 Common mreD rod shape-determining protein MreD YpsIP31758_0400 64 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 153950235 Common - PTS system, mannose/fructose/sorbose family, IIC component YpsIP31758_2369 37 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 153947427 Common - hypothetical protein YpsIP31758_0930 18 COG4289 COG4289, Uncharacterized protein conserved in bacteria Function unknown 153950366 Common - hypothetical protein YpsIP31758_2742 6 None None None 153950016 Pathogen - hypothetical protein YpsIP31758_1105 1 None None None 153949270 Common - carbohydrate uptake ABC transporter-1 (CUT1) family, periplasmic carbohydrate-binding protein YpsIP31758_3575 87 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153948537 Common mprA transcriptional repressor MprA YpsIP31758_3200 41 COG1846 MarR, Transcriptional regulators Transcription 153949923 Pathogen - hypothetical protein YpsIP31758_1709 1 None None None 153948813 Common - acetyltransferase, GNAT family YpsIP31758_2127 93 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 153949523 Common ruvA Holliday junction DNA helicase RuvA YpsIP31758_2031 211 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 153947344 Common - pentulose kinase, FGGY family YpsIP31758_0368 178 COG1069 AraB, Ribulose kinase Energy production and conversion 153948822 Pathogen - hypothetical protein YpsIP31758_3694 1 None None None 153950076 Common hslU heat shock protein HslVU, ATPase subunit HslU YpsIP31758_0112 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 153949074 Pathogen - hypothetical protein YpsIP31758_2728 1 None None None 153947455 Common - amino acid ABC transporter, permease protein YpsIP31758_3189 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 153949086 Pathogen - hypothetical protein YpsIP31758_0691 2 None None None 153950461 Common speD S-adenosylmethionine decarboxylase proenzyme YpsIP31758_3355 30 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 153947199 Common malE1 maltose/maltodextrin ABC transporter, periplasmic maltose/maltodextrin-binding protein YpsIP31758_0914 90 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 153948446 Pathogen - hypothetical protein YpsIP31758_2174 1 None None None 153947579 Common iscR iron-sulfur cluster assembly transcription factor IscR YpsIP31758_1167 174 COG1959 COG1959, Predicted transcriptional regulator Transcription 153948565 Common - preprotein translocase, SecG subunit YpsIP31758_3599 123 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 153948993 Common hslO chaperonin HslO YpsIP31758_3977 139 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 153949939 Common - periplasmic pectate lyase YpsIP31758_4066 5 None None None 153949934 Common dkgA 2,5-diketo-D-gluconic acid reductase A YpsIP31758_0586 164 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 153948872 Common pepT1 peptidase T YpsIP31758_0680 60 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 153950604 Common ilvB2 acetolactate synthase, large subunit, biosynthetic type YpsIP31758_1839 223 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 153948116 Common - hypothetical protein YpsIP31758_0403 56 COG3164 COG3164, Predicted membrane protein Function unknown 153950629 Pathogen - hypothetical protein YpsIP31758_0786 3 None None None 153947724 Common proS prolyl-tRNA synthetase YpsIP31758_1038 248 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153949965 Common - peptidase, M48 family YpsIP31758_3535 76 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 153950516 Pathogen - hypothetical protein YpsIP31758_2282 1 None None None 153950398 Common cvpA colicin V production protein YpsIP31758_1425 104 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 153948038 Common thiI thiamine biosynthesis/tRNA modification protein ThiI YpsIP31758_3108 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 153947563 Common - conserved hypothetical protein TIGR00253 YpsIP31758_3604 96 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 153949511 Common fnr fumarate and nitrate reduction regulatory protein YpsIP31758_1833 158 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 153948643 Common ogt methylated-DNA--protein-cysteine methyltransferase YpsIP31758_1834 219 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 153949796 Common ilvA threonine ammonia-lyase, biosynthetic YpsIP31758_0158 220 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 153949394 Common - hypothetical protein YpsIP31758_2413 33 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 153947009 Pathogen - hypothetical protein YpsIP31758_2154 1 None None None 153949179 Common - ImpA domain protein YpsIP31758_0796 18 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153947778 Common - hypothetical protein YpsIP31758_2732 18 COG3778 COG3778, Uncharacterized protein conserved in bacteria Function unknown 153950616 Common - carbohydrate kinase, FGGY family YpsIP31758_3247 178 COG0554 GlpK, Glycerol kinase Energy production and conversion 153947025 Common - hypothetical protein YpsIP31758_1409 16 None None None 153950751 Common - hypothetical protein YpsIP31758_0800 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 153950558 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase YpsIP31758_0471 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 153950244 Common - lrgB family protein YpsIP31758_2461 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 153949610 Pathogen - hypothetical protein YpsIP31758_3943 3 None None None 153948589 Common - proton dependent peptide transporter YpsIP31758_1778 82 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 153950049 Common - hypothetical protein YpsIP31758_2223 10 COG2369 COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 Function unknown 153947265 Common fepB ferric enterobactin ABC transporter, ferric enterobactin-binding periplasmic protein FepB YpsIP31758_2441 64 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 153947705 Common - putative ferredoxin-type protein NapF YpsIP31758_1340 63 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 153950343 Common srmB ATP-dependent RNA helicase SrmB YpsIP31758_1126 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 153947804 Common hpaF 5-carboxymethyl-2-hydroxymuconate delta isomerase YpsIP31758_2361 29 COG3232 HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase Amino acid transport and metabolism 153948381 Common - transporter, major facilitator family YpsIP31758_0688 80 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153950406 Common - SCP-2 sterol transfer family protein YpsIP31758_3580 34 COG3154 COG3154, Putative lipid carrier protein Lipid metabolism 153950658 Common flgE1 flagellar hook protein FlgE YpsIP31758_2321 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 153947151 Common - type III secretion apparatus protein, YscD/HrpQ family YpsIP31758_3829 8 None None None 153950380 Common - ImpA domain protein YpsIP31758_0805 10 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153950782 Common - hypothetical protein YpsIP31758_2616 49 COG2431 COG2431, Predicted membrane protein Function unknown 153946840 Common - glycosyl transferase, WecB/TagA/CpsF family YpsIP31758_0193 108 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 153949978 Common - hypothetical protein YpsIP31758_3380 14 COG4701 COG4701, Uncharacterized protein conserved in bacteria Function unknown 153948978 Common pstC2 phosphate ABC transporter, permease protein PstC YpsIP31758_4170 224 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 153947870 Common gltS sodium/glutamate symporter YpsIP31758_0036 53 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 153950488 Common - hypothetical protein YpsIP31758_3623 26 COG2105 COG2105, Uncharacterized conserved protein Function unknown 153950669 Common - hypothetical protein YpsIP31758_1119 28 COG3817 COG3817, Predicted membrane protein Function unknown 153948693 Common mfd transcription-repair coupling factor YpsIP31758_1598 235 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 153948073 Common - hypothetical protein YpsIP31758_3714 9 None None None 153949778 Common - electron transport complex, RnfABCDGE type, G subunit YpsIP31758_1899 56 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 153947474 Pathogen - hypothetical protein YpsIP31758_2072 1 None None None 153946934 Common - hypothetical protein YpsIP31758_1666 26 COG5430 COG5430, Uncharacterized secreted protein Function unknown 153948703 Common - hypothetical protein YpsIP31758_3701 22 None None None 153947798 Common murD UDP-N-acetylmuramoylalanine--D-glutamate ligase YpsIP31758_3389 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 153948297 Common - CBS/transporter associated domain protein YpsIP31758_3627 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 153947572 Pathogen - hypothetical protein YpsIP31758_1617 1 None None None 153946995 Common - fimbrial usher protein YpsIP31758_3782 32 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153947480 Pathogen - hypothetical protein YpsIP31758_2162 1 None None None 153950273 Common livG high-affinity branched-chain amino acid ABC transporter, ATP-binding protein YpsIP31758_0247 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 153948912 Common nuoB NADH-quinone oxidoreductase, B subunit YpsIP31758_1455 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 153947687 Common - hypothetical protein YpsIP31758_2501 11 COG4253 COG4253, Uncharacterized protein conserved in bacteria Function unknown 153948637 Pathogen - hypothetical protein YpsIP31758_4148 1 None None None 153947133 Common rpsB ribosomal protein S2 YpsIP31758_1013 225 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 153947402 Common - hypothetical protein YpsIP31758_4136 55 COG2345 COG2345, Predicted transcriptional regulator Transcription 153950257 Pathogen - hypothetical protein YpsIP31758_1505 1 None None None 153946951 Common hmuV hemin ABC transporter, ATP-binding protein YpsIP31758_3805 249 COG4559 COG4559, ABC-type hemin transport system, ATPase component Inorganic ion transport and metabolism 153949034 Common - putative sugar ABC transporter, permease protein YpsIP31758_0149 130 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153950822 Common - putative autotransporter protein YpsIP31758_0694 52 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153947979 Common xapR transcriptional regulator XapR YpsIP31758_2826 183 COG0583 LysR, Transcriptional regulator Transcription 153949386 Common dcuA anaerobic C4-dicarboxylate transporter DcuA YpsIP31758_3679 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 153947207 Common - carbohydrate uptake (CUT1 family) ABC transporter, permease protein YpsIP31758_2171 193 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 153947655 Pathogen - hypothetical protein YpsIP31758_0334 1 None None None 153948879 Common - hypothetical protein YpsIP31758_1520 3 None None None 153947278 Pathogen - hypothetical protein YpsIP31758_2396 1 None None None 153949612 Common gltL glutamate/aspartate ABC transporter, ATP-binding protein YpsIP31758_2923 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 153947441 Common - hydrolase, NUDIX family YpsIP31758_1436 22 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 153947321 Common galE UDP-glucose 4-epimerase YpsIP31758_2855 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 153947243 Common secA preprotein translocase, SecA subunit YpsIP31758_3378 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 153950591 Common rbn tRNA-processing ribonuclease BN YpsIP31758_0030 152 COG1295 Rbn, Predicted membrane protein Function unknown 153950086 Pathogen - hypothetical protein YpsIP31758_0342 1 None None None 153948134 Common - hypothetical protein YpsIP31758_0821 25 COG3171 COG3171, Uncharacterized protein conserved in bacteria Function unknown 153947046 Common folD FolD bifunctional protein YpsIP31758_3012 223 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 153947192 Common map2 methionine aminopeptidase, type I YpsIP31758_3273 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 153950157 Common dinB DNA polymerase IV YpsIP31758_3157 182 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 153947933 Common atpA ATP synthase F1, alpha subunit YpsIP31758_4178 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 153950632 Common epaP type III secretion apparatus protein, YscR/HrcR family YpsIP31758_3814 128 COG4790 EscR, Type III secretory pathway, component EscR Intracellular trafficking and secretion 153948759 Common - surface antigen/outer membrane protein, OMP85 family YpsIP31758_3625 124 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 153948018 Common panD aspartate 1-decarboxylase YpsIP31758_3345 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 153948714 Common - hypothetical protein YpsIP31758_2575 23 COG5383 COG5383, Uncharacterized protein conserved in bacteria Function unknown 153950250 Pathogen - hypothetical protein YpsIP31758_3510 1 None None None 153950583 Common mdlB multidrug ABC transporter, permease protein/ATP-binding protein MdlB YpsIP31758_3079 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 153947948 Common nlpD lipoprotein nlpD YpsIP31758_3294 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 153950309 Common pnuC nicotinamide mononucleotide transporter PnuC YpsIP31758_2864 62 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 153949247 Common mgsA methylglyoxal synthase YpsIP31758_2535 87 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism 153946972 Common hslJ heat shock protein HslJ YpsIP31758_1807 15 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 153947175 Common - hypothetical protein YpsIP31758_3705 30 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 153949028 Common eptB phosphoethanolamine transferase YpsIP31758_4081 61 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 153950173 Common kdsA 3-deoxy-8-phosphooctulonate synthase YpsIP31758_2062 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 153949743 Common aspS aspartyl-tRNA synthetase YpsIP31758_2035 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153949280 Common ddhB CDP-glucose 4,6-dehydratase YpsIP31758_3050 217 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153949063 Common - putative transcriptional regulator YpsIP31758_0889 16 COG2944 COG2944, Predicted transcriptional regulator Transcription 153950813 Common ssuD alkanesulfonate monooxygenase YpsIP31758_0354 77 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 153949030 Common rpiA1 ribose 5-phosphate isomerase A YpsIP31758_2690 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 153950483 Common lpxC UDP-3-0-acyl N-acetylglucosamine deacetylase YpsIP31758_3381 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 153947970 Common eprI type III secretion apparatus needle protein YpsIP31758_3826 4 None None None 153950799 Common gntT high-affinity gluconate transporter GntT YpsIP31758_4021 81 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 153950913 Common gltI glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein YpsIP31758_2920 152 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153948206 Pathogen - hypothetical protein YpsIP31758_2336 3 None None None 153949683 Common - sugar-binding transcriptional regulatory, Crp/Fnr family YpsIP31758_3519 68 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 153949868 Common - hypothetical protein YpsIP31758_0023 22 COG3078 COG3078, Uncharacterized protein conserved in bacteria Function unknown 153950191 Common kduD1 2-deoxy-D-gluconate 3-dehydrogenase YpsIP31758_1693 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153950021 Common - beta-ketoacyl synthase family protein YpsIP31758_2520 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153950545 Common - PTS system, lactose/cellobiose specific IIB subunit YpsIP31758_1438 29 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 153948333 Common - cytochrome b561 family protein YpsIP31758_1335 79 COG3038 CybB, Cytochrome B561 Energy production and conversion 153947824 Common - hypothetical protein YpsIP31758_1593 22 COG3150 COG3150, Predicted esterase General function prediction only 153947980 Common - ABC Transporter, ATP-binding protein YpsIP31758_1847 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 153950664 Common - hypothetical protein YpsIP31758_3159 22 COG2991 COG2991, Uncharacterized protein conserved in bacteria Function unknown 153948547 Common hutI imidazolonepropionase YpsIP31758_2113 104 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 153950222 Common flgD1 basal-body rod modification protein FlgD YpsIP31758_2322 100 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 153949727 Common - transcriptional regulator, AraC family YpsIP31758_0347 140 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 153949166 Pathogen - hypothetical protein YpsIP31758_0910 1 None None None 153949465 Common leuC 3-isopropylmalate dehydratase, large subunit YpsIP31758_3407 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 153947666 Common - hypothetical protein YpsIP31758_3272 22 None None None 153949569 Common livK high-affinity branched-chain amino acid ABC transporter, periplasmic leucine-specific-binding protein YpsIP31758_0244 144 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 153947867 Common - hypothetical protein YpsIP31758_1865 11 None None None 153948937 Common helD helicase IV YpsIP31758_2536 228 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 153948726 Common atpC ATP synthase F1, epsilon subunit YpsIP31758_4175 186 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 153949621 Common - peptidase, U32 family YpsIP31758_3582 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 153950188 Common - aldehyde dehydrogenase (NAD) family protein YpsIP31758_1862 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 153949321 Pathogen - hypothetical protein YpsIP31758_2468 1 None None None 153948705 Common - putative lipoprotein YpsIP31758_4129 12 None None None 153948864 Common moaC molybdenum cofactor biosynthesis protein C YpsIP31758_2835 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 153949037 Pathogen - hypothetical protein YpsIP31758_3361 1 None None None 153950792 Common rfaC lipopolysaccharide heptosyltransferase I YpsIP31758_0068 82 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 153950621 Common rbsA7 ribose ABC transporter, ATP-binding protein YpsIP31758_2423 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153950176 Common kefB glutathione-regulated potassium-efflux system protein KefB YpsIP31758_3930 204 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 153947882 Pathogen - hypothetical protein YpsIP31758_3277 1 None None None 153949542 Common - putative lipoprotein YpsIP31758_1590 19 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 153948484 Common lpdA dihydrolipoamide dehydrogenase YpsIP31758_3360 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 153947182 Common - putative type I restriction-modification system, S subunit YpsIP31758_3537 38 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 153949720 Common rfbB dTDP-glucose 4,6-dehydratase YpsIP31758_0186 231 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 153947763 Common guaC guanosine monophosphate reductase YpsIP31758_3373 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 153948065 Common - GTP-binding protein EngA YpsIP31758_1190 236 COG1160 COG1160, Predicted GTPases General function prediction only 153947000 Common murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YpsIP31758_3391 207 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 153950534 Common - hypothetical protein YpsIP31758_1738 86 COG0628 PerM, Predicted permease General function prediction only 153950028 Common rbsC4 ribose ABC transporter, permease protein YpsIP31758_2424 121 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153948971 Common tus DNA replication terminus site-binding protein YpsIP31758_1872 14 None None None 153948518 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, permease protein YpsIP31758_3268 116 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153949377 Common - glycerate kinase YpsIP31758_4052 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 153949899 Pathogen - hypothetical protein YpsIP31758_1941 1 None None None 153947664 Pathogen - hypothetical protein YpsIP31758_1262 1 None None None 153948329 Pathogen - hypothetical protein YpsIP31758_4001 1 None None None 153950266 Common - ABC transporter, permease protein/ATP-binding protein YpsIP31758_2389 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 153948479 Common metR transcriptional regulator MetR YpsIP31758_0262 158 COG0583 LysR, Transcriptional regulator Transcription 153948853 Common trmB tRNA (guanine-N(7)-)-methyltransferase YpsIP31758_0820 179 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 153946825 Common xylF D-xylose-binding periplasmic protein YpsIP31758_4101 92 COG4213 XylF, ABC-type xylose transport system, periplasmic component Carbohydrate transport and metabolism 153950328 Common - transposase YpsIP31758_2896 61 None None None 153946903 Common dksA RNA polymerase-binding protein DksA YpsIP31758_3338 119 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 153946989 Common - polar amino acid uptake ABC transporter, PAAT family, periplasmic amino acid-binding protein YpsIP31758_4165 180 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153950037 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_0527 126 COG1609 PurR, Transcriptional regulators Transcription 153949690 Common - hypothetical protein YpsIP31758_0705 6 None None None 153950136 Pathogen - hypothetical protein YpsIP31758_2205 1 None None None 153947534 Common - carbohydrate uptake ABC transporter 2 (CUT2) family, ATP-binding protein YpsIP31758_3266 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153947526 Common tkt transketolase YpsIP31758_0847 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 153950060 Common lsrD autoinducer AI-2 ABC transporter, permease protein LsrD YpsIP31758_3523 112 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153948954 Common tsr methyl-accepting chemotaxis protein YpsIP31758_0967 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153948233 Common pnp polyribonucleotide nucleotidyltransferase YpsIP31758_3592 241 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 153949535 Common rimM 16S rRNA processing protein RimM YpsIP31758_3227 181 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 153948403 Common smpB SsrA-binding protein YpsIP31758_2893 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 153950059 Common argG argininosuccinate synthase YpsIP31758_2408 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 153948215 Common - metalloprotease-like protein YpsIP31758_1250 89 COG2321 COG2321, Predicted metalloprotease General function prediction only 153949456 Common - hypothetical protein YpsIP31758_2537 43 COG3304 COG3304, Predicted membrane protein Function unknown 153950655 Common uvrB UvrABC system, B protein YpsIP31758_2839 228 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 153948776 Common - lipoyltransferase/lipoate-protein ligase YpsIP31758_1733 72 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 153947860 Common - hypothetical protein YpsIP31758_0600 7 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 153948533 Common rdgC recombination-associated protein RdgC YpsIP31758_3141 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 153947293 Common dmsB anaerobic dimethyl sulfoxide reductase, B subunit YpsIP31758_3260 163 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 153948760 Common glgP glycogen phosphorylase YpsIP31758_4002 147 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 153950691 Pathogen - transcriptional regulator, Fis family YpsIP31758_0323 4 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153949192 Common xseB exodeoxyribonuclease VII, small subunit YpsIP31758_3110 131 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 153949560 Common treR trehalose operon repressor YpsIP31758_0432 128 COG1609 PurR, Transcriptional regulators Transcription 153947644 Common atpB ATP synthase F0, A subunit YpsIP31758_4182 199 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 153949553 Common - hypothetical protein YpsIP31758_3699 23 None None None 153947467 Pathogen - hypothetical protein YpsIP31758_4010 1 None None None 153950148 Common elbB enhancing lycopene biosynthesis protein 2 YpsIP31758_0470 39 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 153949960 Common - transcriptional regulator, RpiR family YpsIP31758_2730 94 COG1737 RpiR, Transcriptional regulators Transcription 153948699 Common groS chaperonin GroS YpsIP31758_3676 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 153948213 Common sufA FeS assembly scaffold SufA YpsIP31758_1741 162 COG0316 IscA, Uncharacterized conserved protein Function unknown 153947564 Common - cytochrome b561 family protein YpsIP31758_3256 64 COG3038 CybB, Cytochrome B561 Energy production and conversion 153948302 Pathogen - hypothetical protein YpsIP31758_3193 2 None None None 153949850 Common rnd ribonuclease D YpsIP31758_2013 118 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 153948081 Common - carbohydrate uptake (CUT2 family) ABC transporter, permease protein YpsIP31758_0367 121 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153947267 Common carB carbamoyl-phosphate synthase, large subunit YpsIP31758_3453 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 153948625 Common - NAD-dependent epimerase/dehydratase family protein YpsIP31758_2107 183 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153947142 Common pdxH pyridoxamine 5'-phosphate oxidase YpsIP31758_1772 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 153950302 Common - putative methyltransferase YpsIP31758_1053 56 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153949204 Common coaBC phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YpsIP31758_0060 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 153949857 Pathogen - hypothetical protein YpsIP31758_3011 1 None None None 153948949 Common - hypothetical protein YpsIP31758_2495 38 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 153950125 Common - acetyltransferase, GNAT family domain protein YpsIP31758_3468 3 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 153950313 Common - hemolysin III family protein YpsIP31758_0870 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 153950251 Common tpx thiol peroxidase YpsIP31758_1795 109 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 153949900 Common topB DNA topoisomerase 3 YpsIP31758_1979 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 153947368 Common - carboxymuconolactone decarboxylase family protein YpsIP31758_0381 75 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 153948735 Common dppC dipeptide ABC transporter, permease protein DppC YpsIP31758_4073 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153950811 Common - CBS domain protein YpsIP31758_3232 218 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 153948666 Common - sulfate permease family protein YpsIP31758_1943 158 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 153949551 Common - peptidase, U32 family YpsIP31758_1208 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 153950573 Common ppiA peptidyl-prolyl cis-trans isomerase A YpsIP31758_3950 197 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 153948040 Common - metalloprotease YpsIP31758_4037 45 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 153947260 Common - hypothetical protein YpsIP31758_1369 26 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153950701 Common - hypothetical protein YpsIP31758_1811 25 COG3784 COG3784, Uncharacterized protein conserved in bacteria Function unknown 153947477 Common mutH DNA mismatch repair endonuclease MutH YpsIP31758_0980 28 COG3066 MutH, DNA mismatch repair protein DNA replication, recombination, and repair 153949161 Pathogen - hypothetical protein YpsIP31758_1921 1 None None None 153948462 Pathogen - hypothetical protein YpsIP31758_3280 1 None None None 153949226 Common crl transcriptional activator Crl YpsIP31758_3151 13 None None None 153949809 Common - tRNA pseudouridine synthase YpsIP31758_1007 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 153948401 Common - 6-phosphogluconate dehydrogenase NAD-binding domain protein YpsIP31758_0380 178 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 153950837 Pathogen - hypothetical protein YpsIP31758_1961 1 None None None 153949478 Pathogen - hypothetical protein YpsIP31758_0117 1 None None None 153946870 Common - hypothetical protein YpsIP31758_0018 18 COG3084 COG3084, Uncharacterized protein conserved in bacteria Function unknown 153947606 Common - general secretion pathway protein C-like protein YpsIP31758_0952 2 COG3031 PulC, Type II secretory pathway, component PulC Intracellular trafficking and secretion 153948102 Common - methyltransferase, HemK family YpsIP31758_2065 210 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 153948321 Common mglB galactose ABC transporter, periplasmic galactose-binding protein YpsIP31758_2467 89 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153949988 Common - putative dATP pyrophosphohydrolase YpsIP31758_2034 44 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 153949848 Pathogen - hypothetical protein YpsIP31758_0789 3 None None None 153949449 Common - putative autotransporter protein YpsIP31758_1179 86 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 153947213 Common metL bifunctional aspartokinase/homoserine dehydrogenase II YpsIP31758_0122 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 153949916 Common ureF urease accessory protein UreF YpsIP31758_1081 36 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 153950115 Common chbG UPF0249 protein ChbG YpsIP31758_1095 64 COG3394 COG3394, Uncharacterized protein conserved in bacteria Function unknown 153947815 Common - hydrolase, NUDIX family YpsIP31758_1276 116 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 153947921 Common rpsO ribosomal protein S15 YpsIP31758_3593 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 153948607 Common - crispr-associated protein, Csy1 family YpsIP31758_1537 18 None None None 153948763 Common rbsC6 ribose ABC transporter, permease protein YpsIP31758_3250 134 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153947140 Common - protein viaA YpsIP31758_0004 24 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 153947730 Common - putative Fe(2+) trafficking protein YggX YpsIP31758_0818 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 153950296 Common - putative aerobic respiration control sensor protein ArcB YpsIP31758_0469 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153947747 Common uvrD DNA helicase II YpsIP31758_0209 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 153949982 Common - putative sugar ABC transporter, permease protein YpsIP31758_0151 122 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 153950468 Common - hypothetical protein YpsIP31758_2489 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 153948428 Pathogen - hypothetical protein YpsIP31758_2612 1 None None None 153949103 Common crcB crcB protein YpsIP31758_2957 189 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 153947786 Common - GTP-binding protein Obg/CgtA YpsIP31758_3609 249 COG0536 Obg, Predicted GTPase General function prediction only 153947685 Common - putative lipoprotein YpsIP31758_1866 11 None None None 153947846 Common - hypothetical protein YpsIP31758_3971 27 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 153948421 Common - transcriptional regulator, AraC family YpsIP31758_3827 96 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 153949069 Common ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YpsIP31758_3298 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 153948393 Pathogen - hypothetical protein YpsIP31758_2326 1 None None None 153949702 Common trpB tryptophan synthase, beta subunit YpsIP31758_1936 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 153950223 Pathogen - hypothetical protein YpsIP31758_1599 1 None None None 153948707 Common - transcriptional regulator, AraC family YpsIP31758_3531 106 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 153950270 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_0150 183 COG0583 LysR, Transcriptional regulator Transcription 153947490 Pathogen - hypothetical protein YpsIP31758_2215 1 None None None 153949716 Common rbsK ribokinase YpsIP31758_0008 196 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 153949017 Common glyS glycyl-tRNA synthetase, beta subunit YpsIP31758_4130 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 153950163 Common hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YpsIP31758_2432 215 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 153948219 Common - putative lipoprotein YpsIP31758_3215 125 COG4105 ComL, DNA uptake lipoprotein General function prediction only 153949189 Common flgB1 flagellar basal-body rod protein FlgB YpsIP31758_0639 66 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 153947147 Common - CDP-alcohol phosphatidyltransferase family protein YpsIP31758_3006 31 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 153947962 Common accC acetyl-CoA carboxylase, biotin carboxylase YpsIP31758_0391 234 COG0439 AccC, Biotin carboxylase Lipid metabolism 153950376 Common mtlR mannitol operon repressor YpsIP31758_4126 18 COG3722 MtlR, Transcriptional regulator Transcription 153950476 Common - oxidoreductase, zinc-binding dehydrogenase family YpsIP31758_3288 210 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 153948306 Common rcsB capsular synthesis regulator component B YpsIP31758_2764 167 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153948940 Common era GTP-binding protein Era YpsIP31758_1137 231 COG1159 Era, GTPase General function prediction only 153947544 Common grxA glutaredoxin GrxA YpsIP31758_2648 45 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 153949111 Common iucB aerobactin siderophore biosynthesis protein IucB YpsIP31758_0713 41 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 153949825 Common rpoN RNA polymerase sigma-54 factor YpsIP31758_0441 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 153949237 Common - sigma-54 dependent transcriptional regulator YpsIP31758_1863 175 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 153948907 Common trxC thioredoxin 2 YpsIP31758_3204 231 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 153948027 Pathogen - hypothetical protein YpsIP31758_0925 1 None None None 153948888 Common - amino acid ABC transporter, ATP-binding protein YpsIP31758_3187 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 153950803 Common - class II aldolase, tagatose bisphosphate family YpsIP31758_0929 179 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 153948109 Common - DedA family protein YpsIP31758_0269 42 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 153948348 Common - oxidoreductase, aldo/keto reductase family YpsIP31758_1329 189 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 153947589 Common hisP histidine ABC transporter, ATP-binding protein YpsIP31758_1431 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 153948009 Common argM succinylornithine transaminase YpsIP31758_2121 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 153946868 Common - ferric uptake regulation protein YpsIP31758_2902 198 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 153947740 Pathogen - hypothetical protein YpsIP31758_0670 1 None None None 153949670 Common - putative invasin YpsIP31758_0608 130 None None None 153949815 Common terC tellurite resistance protein YpsIP31758_3786 96 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 153949697 Common - radical SAM protein, TIGR01212 family YpsIP31758_0468 90 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 153948905 Pathogen - hypothetical protein YpsIP31758_3056 1 None None None 153949587 Pathogen - hypothetical protein YpsIP31758_2482 1 None None None 153948196 Common alr2 alanine racemase YpsIP31758_3764 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 153947311 Common pbpC penicillin-binding protein 1C YpsIP31758_2980 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 153947337 Pathogen - hypothetical protein YpsIP31758_3659 1 None None None 153948513 Common astA arginine N-succinyltransferase, beta subunit YpsIP31758_2120 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 153950927 Pathogen - hypothetical protein YpsIP31758_3008 1 None None None 153950644 Common dmpI 4-oxalocrotonate tautomerase family enzyme YpsIP31758_4060 34 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 153948969 Common urtA urea ABC transporter, urea binding protein YpsIP31758_2794 109 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 153946819 Common - putative ATPase RavA YpsIP31758_0005 83 COG0714 COG0714, MoxR-like ATPases General function prediction only 153948540 Common mutM formamidopyrimidine-DNA glycosylase YpsIP31758_0064 181 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 153947703 Common - sensor histidine kinase/response regulator YpsIP31758_2161 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153949758 Common - integral membrane protein YpsIP31758_1548 94 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 153950789 Common phnL phosphonate C-P lyase system protein PhnL YpsIP31758_3565 249 COG4778 PhnL, ABC-type phosphonate transport system, ATPase component Inorganic ion transport and metabolism 153947289 Common - ATPase, AFG1 family protein YpsIP31758_0458 103 COG1485 COG1485, Predicted ATPase General function prediction only 153947355 Common - permease, AmpG family YpsIP31758_3096 113 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153947582 Common ilvE branched-chain amino acid aminotransferase YpsIP31758_0156 219 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 153950034 Common - hypothetical protein YpsIP31758_3697 14 None None None 153950830 Common - site-specific recombinase, phage integrase family, truncation YpsIP31758_4097 77 None None None 153950743 Common - hypothetical protein YpsIP31758_0803 11 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 153950524 Common - fumarate hydratase, class I YpsIP31758_3271 146 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 153950304 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase YpsIP31758_3112 220 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 153947796 Common gidB methyltransferase GidB YpsIP31758_4184 203 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 153946964 Common - hypothetical protein YpsIP31758_1777 24 None None None 153950109 Common - amino acid ABC transporter, periplasmic amino acid-binding protein YpsIP31758_3190 157 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153950686 Common tig trigger factor YpsIP31758_3093 216 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 153949425 Common araB L-ribulokinase YpsIP31758_1886 63 COG1069 AraB, Ribulose kinase Energy production and conversion 153947330 Common - hypothetical protein YpsIP31758_3876 191 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 153946919 Common - hypothetical protein YpsIP31758_3762 39 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 153950387 Pathogen - putative anti-sigma-28 factor, FlgM YpsIP31758_0637 1 None None None 153949430 Common - gram-negative pili assembly chaperone YpsIP31758_1364 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153949520 Pathogen - hypothetical protein YpsIP31758_2738 1 None None None 153947501 Common cysM cysteine synthase B YpsIP31758_1303 229 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 153950353 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YpsIP31758_1186 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 153950311 Common - hypothetical protein YpsIP31758_1565 11 None None None 153948490 Common kdsD arabinose 5-phosphate isomerase YpsIP31758_0446 167 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 153950396 Common - deoC/fbaB aldolase family protein YpsIP31758_3525 76 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 153947073 Common - crispr-associated protein, Csy3 family YpsIP31758_1539 21 None None None 153947627 Common - thiF family protein YpsIP31758_0996 219 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 153949749 Common rumB 23S rRNA (uracil-5-)-methyltransferase RumB YpsIP31758_2640 185 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 153949023 Common - ABC transporter, ATP-binding protein YpsIP31758_3489 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 153949876 Common aroK shikimate kinase YpsIP31758_3966 201 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 153948450 Common - hypothetical protein YpsIP31758_3618 10 None None None 153949309 Common yicE xanthine permease YpsIP31758_0034 128 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 153948832 Common lpxB lipid-A-disaccharide synthase YpsIP31758_1026 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 153947052 Common mgtA magnesium-translocating P-type ATPase YpsIP31758_1633 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 153950288 Common pheT phenylalanyl-tRNA synthetase, beta subunit YpsIP31758_1717 246 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 153948613 Common dctA aerobic C4-dicarboxylate transport protein YpsIP31758_4064 159 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 153946836 Common - putative lipoprotein YpsIP31758_1641 4 None None None 153949230 Common - hypothetical protein YpsIP31758_2646 13 None None None 153947103 Pathogen - hypothetical protein YpsIP31758_0760 1 None None None 153947623 Common - aminotransferase, classes I and II YpsIP31758_1334 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 153948330 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ YpsIP31758_1139 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 153949839 Common leuB 3-isopropylmalate dehydrogenase YpsIP31758_3406 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 153949098 Common - hypothetical protein YpsIP31758_3550 31 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 153947300 Common - hypothetical protein YpsIP31758_0481 11 None None None 153948841 Common baeS signal transduction histidine-protein kinase BaeS YpsIP31758_1211 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153948052 Common - hypothetical protein YpsIP31758_1554 8 COG5645 COG5645, Predicted periplasmic lipoprotein General function prediction only 153949148 Common uspB universal stress protein B YpsIP31758_4034 12 None None None 153949302 Common gntK thermoresistant gluconokinase YpsIP31758_4020 80 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 153949754 Common - ferritin family protein YpsIP31758_1497 102 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 153949871 Common glnQ glutamine ABC transporter, ATP-binding protein YpsIP31758_1493 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 153950716 Common - transporter, major facilitator family YpsIP31758_2471 60 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948164 Common thiQ thiamine ABC transporter, ATP-binding protein YpsIP31758_3416 249 COG3840 ThiQ, ABC-type thiamine transport system, ATPase component Coenzyme metabolism 153950720 Common ureB urease, beta subunit YpsIP31758_1078 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 153949292 Pathogen - hypothetical protein YpsIP31758_3991 1 None None None 153949319 Common - D-fructose-responsive transcription factor YpsIP31758_3399 122 COG1609 PurR, Transcriptional regulators Transcription 153949136 Common - Ser/Thr protein phosphatase family protein YpsIP31758_0576 95 COG1409 Icc, Predicted phosphohydrolases General function prediction only 153950501 Common ilvN acetolactate synthase, small subunit YpsIP31758_3400 191 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 153949142 Pathogen - hypothetical protein YpsIP31758_3741 1 None None None 153950900 Common zipA cell division protein ZipA YpsIP31758_1320 43 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 153948120 Common - carbohydrate uptake (CUT1 family) ABC transporter, periplasmic carbohydrate-binding protein YpsIP31758_2172 116 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153948983 Common fliH1 flagellar assembly protein FliH YpsIP31758_0633 36 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 153949996 Common manB2 phosphomannomutase YpsIP31758_1525 240 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 153947981 Pathogen - putative flagellar hook associated protein lafW YpsIP31758_0650 3 None None None 153947393 Common - OmpA domain protein YpsIP31758_1355 138 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153947417 Pathogen - hypothetical protein YpsIP31758_2153 1 None None None 153947943 Common fldB flavodoxin 2 YpsIP31758_0878 68 COG0716 FldA, Flavodoxins Energy production and conversion 153948435 Common sppA signal peptide peptidase SppA, 67K type YpsIP31758_1982 188 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 153950735 Common pilS type IV pilus biogenesis protein YpsIP31758_3729 6 None None None 153946815 Common xapA xanthosine phosphorylase YpsIP31758_2824 143 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 153949651 Common - glycosyl hydrolase, family 31 protein YpsIP31758_0924 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 153949121 Common lpxK tetraacyldisaccharide 4'-kinase YpsIP31758_2576 129 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 153948898 Common feoA ferrous iron transport protein A YpsIP31758_3984 24 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 153948833 Pathogen - hypothetical protein YpsIP31758_1439 1 None None None 153948307 Common ihfA integration host factor, alpha subunit YpsIP31758_1718 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 153950005 Common epaO type III secretion apparatus protein, YscQ/HrcQ family YpsIP31758_3815 5 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 153947896 Common flgA flagella basal body P-ring formation protein FlgA YpsIP31758_2325 54 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 153947241 Common - ABC transporter, ATP-binding protein YpsIP31758_2714 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 153948180 Common - hypothetical protein YpsIP31758_2924 21 COG3352 FlaC, Putative archaeal flagellar protein C Cell motility and secretion 153948431 Common - efflux transporter, RND family, MFP subunit YpsIP31758_2477 84 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153950441 Common - hypothetical protein YpsIP31758_1200 9 None None None 153949289 Common - hypothetical protein YpsIP31758_2509 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 153946982 Common - hypothetical protein YpsIP31758_2544 17 COG3120 COG3120, Uncharacterized protein conserved in bacteria Function unknown 153946877 Common ppa inorganic pyrophosphatase YpsIP31758_3622 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 153948132 Common - sugar ABC transporter, permease protein YpsIP31758_0530 176 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 153948288 Common - antirestriction protein, ArdB family YpsIP31758_0752 17 None None None 153948739 Pathogen - hypothetical protein YpsIP31758_4011 1 None None None 153948000 Common ruvB Holliday junction DNA helicase RuvB YpsIP31758_2030 230 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 153950241 Common nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit YpsIP31758_3165 76 COG1805 NqrB, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Energy production and conversion 153948457 Common - hypothetical protein YpsIP31758_2715 11 None None None 153947361 Common livH high-affinity branched-chain amino acid ABC transporter, permease protein YpsIP31758_0245 154 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 153950412 Common - yiaA/B two helix domain protein YpsIP31758_0119 12 COG4682 COG4682, Predicted membrane protein Function unknown 153950867 Pathogen - hypothetical protein YpsIP31758_3137 1 None None None 153950564 Pathogen - hypothetical protein YpsIP31758_2418 1 None None None 153948687 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2523 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153947552 Common - AmpE-like protein YpsIP31758_3367 15 COG3725 AmpE, Membrane protein required for beta-lactamase induction Defense mechanisms 153949485 Common - putative anaerobic dimethyl sulfoxide reductase, A subunit YpsIP31758_1344 182 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 153948473 Common dnaQ DNA polymerase III, epsilon subunit YpsIP31758_1055 188 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 153950676 Common lpxD UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YpsIP31758_1023 189 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 153946847 Common - permease, cytosine/purines, uracil, thiamine, allantoin family YpsIP31758_1056 54 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 153949659 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_1511 127 COG0583 LysR, Transcriptional regulator Transcription 153949882 Common metJ Met repressor YpsIP31758_0120 23 COG3060 MetJ, Transcriptional regulator of met regulon Transcription / Amino acid transport and metabolism 153950436 Common - conserved hypothetical protein TIGR01033 YpsIP31758_2033 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 153950092 Common - hypothetical protein YpsIP31758_1776 10 None None None 153949351 Common - lipoprotein, SmpA/OmlA family YpsIP31758_2890 56 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 153949929 Common murC UDP-N-acetylmuramate--alanine ligase YpsIP31758_3386 210 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 153950846 Common imp organic solvent tolerance protein YpsIP31758_3441 120 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 153950453 Common - ParB family protein YpsIP31758_2231 32 COG1475 Spo0J, Predicted transcriptional regulators Transcription 153949901 Common - hypothetical protein YpsIP31758_2931 7 None None None 153949928 Common kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase YpsIP31758_2571 139 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 153950230 Common - transcriptional regulator, TetR family YpsIP31758_0210 10 COG1309 AcrR, Transcriptional regulator Transcription 153949180 Common - outer membrane porin, OprD family YpsIP31758_2905 14 None None None 153948486 Common - putative glutathione S-transferase YpsIP31758_2665 101 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 153949100 Common nfo endonuclease 4 YpsIP31758_2675 99 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 153947939 Common - iron chelate ABC transporter (FeCT) family, permease protein YpsIP31758_2634 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 153949503 Common - RNA methyltransferase, TrmH family, group 3 YpsIP31758_3644 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 153950614 Pathogen - hypothetical protein YpsIP31758_0606 1 None None None 153950877 Common mrdA penicillin-binding protein 2 YpsIP31758_2949 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 153950237 Common - helix-turn-helix DNA binding domain protein YpsIP31758_0887 13 COG2522 COG2522, Predicted transcriptional regulator General function prediction only 153947533 Common rfaF lipopolysaccharide heptosyltransferase II YpsIP31758_0069 105 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 153946956 Pathogen - prepilin peptidase dependent protein-like protein YpsIP31758_0988 3 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 153949496 Common uhpC regulatory protein UhpC YpsIP31758_4078 117 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153948957 Common - polysaccharide lyase, family 8 YpsIP31758_0946 6 None None None 153948499 Common - TonB-dependent receptor YpsIP31758_3276 130 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 153948917 Common - Putative sensor-like histidine kinase YfhK YpsIP31758_1150 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 153948481 Common - gram-negative pili assembly chaperone YpsIP31758_2167 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153950491 Common - hypothetical protein YpsIP31758_0672 8 None None None 153947721 Common ihfB integration host factor, beta subunit YpsIP31758_2579 200 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 153950824 Common tsgA major facilitator family transporter TsgA YpsIP31758_3954 50 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 153949967 Common - OmpA domain protein YpsIP31758_1372 147 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 153949025 Common - transporter, small conductance mechanosensitive ion channel (MscS) family YpsIP31758_0851 189 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 153947857 Common - hypothetical protein YpsIP31758_0206 28 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 153947451 Common - integral membrane protein YpsIP31758_1993 42 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 153949090 Common - alkaline phosphatase YpsIP31758_1835 85 COG1785 PhoA, Alkaline phosphatase Inorganic ion transport and metabolism 153948050 Common gspJ general secretion pathway protein J YpsIP31758_0958 17 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 153946993 Common galR transcriptional regulator GalR YpsIP31758_0972 128 COG1609 PurR, Transcriptional regulators Transcription 153947850 Common - hypothetical protein YpsIP31758_3740 21 None None None 153946838 Common - tail protein YpsIP31758_2189 18 None None None 153947738 Common - hypothetical protein YpsIP31758_2247 4 None None None 153948691 Common - hydrolase, carbon-nitrogen family protein YpsIP31758_0404 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 153949158 Common ccmD heme exporter protein D YpsIP31758_1390 6 COG3114 CcmD, Heme exporter protein D Intracellular trafficking and secretion 153949330 Common proW glycine betaine/L-proline ABC transporter, permease protein YpsIP31758_1060 206 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 153947809 Common mdtD transporter, major facilitator family YpsIP31758_1212 221 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153950539 Pathogen - hypothetical protein YpsIP31758_2655 1 None None None 153947346 Pathogen - hypothetical protein YpsIP31758_3031 1 None None None 153947576 Common - hypothetical protein YpsIP31758_2614 32 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 153947776 Common lspA signal peptidase II YpsIP31758_3459 200 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153946933 Pathogen - hypothetical protein YpsIP31758_2042 1 None None None 153947916 Common - hypothetical protein YpsIP31758_2197 8 None None None 153950271 Common - GlpM protein YpsIP31758_2255 14 COG3136 GlpM, Uncharacterized membrane protein required for alginate biosynthesis General function prediction only 153947802 Common - Sodium/calcium exchanger protein YrbG YpsIP31758_0447 139 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 153949589 Common ydiI esterase YdiI YpsIP31758_1740 90 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 153947541 Pathogen - hypothetical protein YpsIP31758_3356 1 None None None 153948142 Common - putative lateral flagellar peptidoglycan hydrolase YpsIP31758_0647 20 COG3951 COG3951, Rod binding protein Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 153950345 Common - porin, LamB family YpsIP31758_0920 27 COG4580 LamB, Maltoporin (phage lambda and maltose receptor) Carbohydrate transport and metabolism 153947425 Pathogen ypmA superantigen YpmA YpsIP31758_1858 1 None None None 153947032 Common flgC1 flagellar basal-body rod protein FlgC YpsIP31758_2323 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 153947838 Common - type III secretion outer membrane pore, YscC/HrcC family YpsIP31758_3830 106 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 153948056 Common xni exodeoxyribonuclease-9 YpsIP31758_1002 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 153947482 Common - putative decarboxylase YpsIP31758_1003 48 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 153948426 Common potB spermidine/putrescine ABC transporter, permease protein YpsIP31758_1221 178 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 153946853 Common - D-alanyl-D-alanine carboxypeptidase YpsIP31758_2952 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 153946849 Pathogen - hypothetical protein YpsIP31758_2216 1 None None None 153948910 Common - Na+/H+ antiporter family protein YpsIP31758_0539 55 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 153950107 Common - cyd operon protein YbgT YpsIP31758_2874 15 COG4890 COG4890, Predicted outer membrane lipoprotein Function unknown 153950915 Common - hypothetical protein YpsIP31758_0457 23 COG3105 COG3105, Uncharacterized protein conserved in bacteria Function unknown 153949793 Pathogen - hypothetical protein YpsIP31758_1352 1 None None None 153947972 Common - transcriptional regulator, ArsR family YpsIP31758_3281 161 COG0640 ArsR, Predicted transcriptional regulators Transcription 153950606 Pathogen fliJ2 flagellar export protein FliJ YpsIP31758_0635 4 None None None 153950808 Common serB phosphoserine phosphatase YpsIP31758_3493 148 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 153948723 Common hflC HflC protein YpsIP31758_3650 134 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 153950408 Pathogen - hypothetical protein YpsIP31758_1149 2 None None None 153948824 Common - sigma-54 dependent DNA-binding response regulator YpsIP31758_1152 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153947276 Common - NAD+ synthetase family protein YpsIP31758_1154 231 COG0171 NadE, NAD synthase Coenzyme metabolism 153948221 Pathogen - putative lipoprotein YpsIP31758_0962 3 None None None 153949953 Common - putative lipoprotein YpsIP31758_1338 21 COG4259 COG4259, Uncharacterized protein conserved in bacteria Function unknown 153948345 Common - hypothetical protein YpsIP31758_2180 3 None None None 153948922 Common bioC biotin biosynthesis protein BioC YpsIP31758_2842 165 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153949407 Pathogen - hypothetical protein YpsIP31758_0048 2 None None None 153947698 Pathogen - hypothetical protein YpsIP31758_0766 1 None None None 153947153 Pathogen - hypothetical protein YpsIP31758_0051 1 None None None 153947131 Common - bacterial extracellular solute-binding protein/transglycosylase SLT domain YpsIP31758_1146 113 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 153948855 Common - pyruvate:ferredoxin (flavodoxin) oxidoreductase YpsIP31758_1803 114 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 153947689 Common mukF chromosome partition protein mukF YpsIP31758_2567 19 COG3006 MukF, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 153949387 Common - putative mannosyltransferase WbyJ YpsIP31758_3044 3 None None None 153949691 Pathogen - hypothetical protein YpsIP31758_2177 1 None None None 153946888 Pathogen - hypothetical protein YpsIP31758_2397 1 None None None 153947774 Common - phage repressor protein YpsIP31758_2750 31 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 153950401 Common djlA dnaJ-like protein DjlA YpsIP31758_3440 66 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 153950081 Common - pyridine nucleotide-disulfide oxidoreductase family protein YpsIP31758_0135 236 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 153949768 Common - alcohol dehydrogenase, short-chain family YpsIP31758_4159 26 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 153950165 Common trpC tryptophan biosynthesis protein trpCF YpsIP31758_1935 220 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 153949993 Common tusD tRNA 2-thiouridine synthesizing sulfurtransferase TusD YpsIP31758_3924 43 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 153947026 Common selB selenocysteine-specific translation elongation factor YpsIP31758_4114 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 153949396 Common - putative lipoprotein YpsIP31758_3252 10 COG5618 COG5618, Predicted periplasmic lipoprotein General function prediction only 153949088 Common - hypothetical protein YpsIP31758_3353 11 None None None 153947570 Common - cytochrome c peroxidase YpsIP31758_3278 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 153949357 Common - hypothetical protein YpsIP31758_3718 33 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 153950078 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_0579 131 COG0583 LysR, Transcriptional regulator Transcription 153948584 Common rfbA glucose-1-phosphate thymidylyltransferase YpsIP31758_0187 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 153949748 Common - hypothetical protein YpsIP31758_3809 28 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 153950463 Common - hypothetical protein YpsIP31758_1942 15 None None None 153947702 Common - hypothetical protein YpsIP31758_1731 27 None None None 153948635 Common - efflux ABC transporter, permease protein YpsIP31758_3019 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 153949120 Common - hypothetical protein YpsIP31758_3629 18 COG3054 COG3054, Predicted transcriptional regulator General function prediction only 153950540 Pathogen - hypothetical protein YpsIP31758_1651 1 None None None 153950088 Common lepB signal peptidase I YpsIP31758_1135 196 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 153947384 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_2155 191 COG0583 LysR, Transcriptional regulator Transcription 153948266 Common fbpC iron(III) ABC transporter, ATP-binding protein YpsIP31758_1348 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 153949400 Pathogen - hypothetical protein YpsIP31758_1100 1 None None None 153950906 Common acpP acyl carrier protein YpsIP31758_1579 179 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153950018 Common - pentapeptide repeat protein YpsIP31758_3428 34 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 153949711 Common solA N-methyl-L-tryptophan oxidase YpsIP31758_1564 59 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 153947991 Common tehB tellurite resistance protein TehB YpsIP31758_2133 38 COG3615 TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance Inorganic ion transport and metabolism 153947220 Pathogen - hypothetical protein YpsIP31758_0044 2 None None None 153949764 Common - efflux transporter, RND family, MFP subunit YpsIP31758_3513 158 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153947048 Common greA transcription elongation factor GreA YpsIP31758_3605 204 COG0782 GreA, Transcription elongation factor Transcription 153949240 Common - putative anaerobic dimethyl sulfoxide reductase, B subunit YpsIP31758_1343 164 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 153947920 Common - YjeF family protein YpsIP31758_3658 219 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 153950015 Common accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YpsIP31758_1029 195 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 153950921 Common - sulfate permease family protein YpsIP31758_2061 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 153947011 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_3000 151 COG0583 LysR, Transcriptional regulator Transcription 153949562 Common ugpQ glycerophosphoryl diester phosphodiesterase YpsIP31758_0260 149 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 153948156 Pathogen - hypothetical protein YpsIP31758_0166 1 None None None 153949254 Common nrdH glutaredoxin-related protein NrdH YpsIP31758_1065 37 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 153947177 Common - hypothetical protein YpsIP31758_2993 17 COG4929 COG4929, Uncharacterized membrane-anchored protein Function unknown 153949196 Common clpA ATP-dependent Clp protease, ATP-binding subunit ClpA YpsIP31758_2606 230 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 153948199 Common - outer membrane protein, OmpW family YpsIP31758_1940 71 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 153947892 Pathogen - hypothetical protein YpsIP31758_1522 2 None None None 153947245 Common - yciH protein YpsIP31758_1912 52 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 153950933 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein YpsIP31758_2694 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 153948410 Pathogen - hypothetical protein YpsIP31758_3283 1 None None None 153947098 Pathogen - hypothetical protein YpsIP31758_3243 1 None None None 153948270 Common fhuF ferric iron reductase protein FhuF YpsIP31758_2449 14 COG4114 FhuF, Uncharacterized Fe-S protein General function prediction only 153950657 Pathogen - hypothetical protein YpsIP31758_3723 1 None None None 153947108 Common rpsH ribosomal protein S8 YpsIP31758_3900 240 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 153950783 Common yqiA esterase YqiA YpsIP31758_0577 47 COG3150 COG3150, Predicted esterase General function prediction only 153948366 Common nth endonuclease III YpsIP31758_1901 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 153949326 Common oprC TonB-dependent copper receptor OprC YpsIP31758_3953 90 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 153948263 Common - metallo-beta-lactamase family protein YpsIP31758_0379 57 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 153948204 Common ligA1 DNA ligase, NAD-dependent YpsIP31758_1321 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 153950130 Common - hypothetical protein YpsIP31758_1533 8 None None None 153947255 Common - haemolysin secretion/activation protein, ShlB/FhaC/HecB family YpsIP31758_2045 35 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 153948615 Common - putative autotransporter protein YpsIP31758_1177 35 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 153949974 Common - putative phosphoribulokinase YpsIP31758_3942 52 COG3954 PrkB, Phosphoribulokinase Energy production and conversion 153948806 Common - haemolysin secretion/activation protein, ShlB/FhaC/HecB family YpsIP31758_0509 55 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 153949626 Common hrpB ATP-dependent helicase HrpB YpsIP31758_3335 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 153948531 Common - hypothetical protein YpsIP31758_2009 35 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 153948535 Common - iron chelate ABC transporter, ATP-binding protein YpsIP31758_4095 249 COG4604 CeuD, ABC-type enterochelin transport system, ATPase component Inorganic ion transport and metabolism 153949635 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase YpsIP31758_2582 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 153949725 Common agaV PTS system, N-acetylgalactosamine-specific phosphotransferase enzyme IIB component2 YpsIP31758_0940 41 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 153948371 Common - TonB-dependent siderophore receptor YpsIP31758_0710 50 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 153947899 Common - lipoprotein, NlpC/P60 family YpsIP31758_2707 134 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 153949081 Common - molybdopterin oxidoreductase YpsIP31758_0974 139 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 153950216 Common plsX fatty acid/phospholipid synthesis protein PlsX YpsIP31758_1575 179 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 153947839 Common selD selenide, water dikinase YpsIP31758_1980 147 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 153947876 Common - hypothetical protein YpsIP31758_2983 27 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 153949880 Common - fimbria protein YpsIP31758_1413 17 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 153950891 Common pth peptidyl-tRNA hydrolase YpsIP31758_2074 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 153948130 Common - IS1541, transposase YpsIP31758_3127 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153949337 Common relA GTP pyrophosphokinase YpsIP31758_3319 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 153950549 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase YpsIP31758_0454 220 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 153949463 Common - curli production assembly/transport component CsgG YpsIP31758_1337 30 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 153947732 Common - putative competence/damage-inducible protein CinA YpsIP31758_2773 143 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 153949214 Common nqrE1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YpsIP31758_2149 76 COG2209 NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE Energy production and conversion 153949619 Common - NAD(+)/NADH kinase YpsIP31758_2888 240 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 153946914 Common phnF phosphonates metabolism transcriptional regulator PhnF YpsIP31758_3559 116 COG2188 PhnF, Transcriptional regulators Transcription 153948231 Common - phage baseplate assembly protein YpsIP31758_2735 16 COG4384 COG4384, Mu-like prophage protein gp45 Function unknown 153946842 Common - fucose isomerase domain protein YpsIP31758_3246 13 COG2407 FucI, L-fucose isomerase and related proteins Carbohydrate transport and metabolism 153950876 Common - putative transcriptional regulator HexR YpsIP31758_2023 103 COG1737 RpiR, Transcriptional regulators Transcription 153948063 Common - putative transcriptional regulator YpsIP31758_1620 139 COG1733 COG1733, Predicted transcriptional regulators Transcription 153950790 Common modB molybdate ABC transporter, permease protein YpsIP31758_2849 232 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 153949946 Common macA macrolide-specific efflux protein MacA YpsIP31758_2611 176 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153947761 Common - GIY-YIG domain protein YpsIP31758_3578 50 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 153949641 Common narX nitrate/nitrite sensor protein NarX YpsIP31758_2123 146 COG3850 NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific Signal transduction mechanisms 153949379 Pathogen - hypothetical protein YpsIP31758_0250 1 None None None 153949224 Common - fimbrial usher protein YpsIP31758_0169 38 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 153949419 Common trkA Trk system potassium uptake protein TrkA YpsIP31758_3885 148 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 153948761 Common malZ maltodextrin glucosidase YpsIP31758_3131 165 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 153946823 Common - hypothetical protein YpsIP31758_3847 26 COG3068 COG3068, Uncharacterized protein conserved in bacteria Function unknown 153947002 Common nlpI lipoprotein NlpI YpsIP31758_3591 62 COG4785 NlpI, Lipoprotein NlpI, contains TPR repeats General function prediction only 153948522 Common - HAD hydrolase, IA family YpsIP31758_4162 105 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 153948795 Common hpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YpsIP31758_2359 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 153947387 Common deoB phosphopentomutase YpsIP31758_3496 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 153949533 Common rpsC ribosomal protein S3 YpsIP31758_3909 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 153948093 Common - putative lipoprotein YpsIP31758_1040 14 None None None 153948239 Common - quinone oxidoreductase YpsIP31758_3766 173 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 153949424 Pathogen - hypothetical protein YpsIP31758_3306 1 None None None 153947056 Common - hypothetical protein YpsIP31758_1875 19 COG5339 COG5339, Uncharacterized protein conserved in bacteria Function unknown 153948373 Common menF menaquinone-specific isochorismate synthase YpsIP31758_1481 222 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 153948956 Common glpF glycerol uptake facilitator protein YpsIP31758_0102 128 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 153949502 Common kch potassium channel protein Kch YpsIP31758_1087 79 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 153947114 Common - DNA-binding response regulator, LuxR family YpsIP31758_2160 220 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153949555 Common - auxiliary transport protein, membrane fusion protein family YpsIP31758_0535 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 153947469 Pathogen - hypothetical protein YpsIP31758_0411 2 None None None 153949547 Common - DNA binding protein YpsIP31758_3724 15 COG1396 HipB, Predicted transcriptional regulators Transcription 153949048 Common - hypothetical protein YpsIP31758_2036 92 COG1801 COG1801, Uncharacterized conserved protein Function unknown 153948621 Pathogen - hypothetical protein YpsIP31758_3001 1 None None None 153947236 Common phnG phosphonate metabolism protein PhnG YpsIP31758_3560 31 COG3624 PhnG, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 153948661 Common - hypothetical protein YpsIP31758_1068 8 None None None 153949269 Common polB DNA polymerase II YpsIP31758_3418 64 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 153948323 Common - hypothetical protein YpsIP31758_0049 41 COG5519 COG5519, Superfamily II helicase and inactivated derivatives DNA replication, recombination, and repair 153946896 Pathogen - hypothetical protein YpsIP31758_0253 5 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 153950693 Common lolC lipoprotein-releasing system, transmembrane protein lolC YpsIP31758_1600 151 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 153949370 Common - peptidase, S54 (rhomboid) family protein YpsIP31758_3996 118 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 153950429 Common - putative outer membrane protein YpsIP31758_2775 12 None None None 153949890 Common sapB peptide ABC transporter, permease protein SapB YpsIP31758_1783 218 COG4168 SapB, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 153947472 Common cysS cysteinyl-tRNA synthetase YpsIP31758_3014 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 153948525 Common bcr bicyclomycin resistance protein YpsIP31758_2717 222 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153947231 Common znuA high-affinity zinc uptake ABC transporter, periplasmic zinc-binding protein YpsIP31758_2027 168 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 153950801 Common cspD cold shock domain protein CspD YpsIP31758_2609 178 COG1278 CspC, Cold shock proteins Transcription 153947400 Common tauC taurine ABC transporter, permease protein YpsIP31758_3936 187 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 153948444 Pathogen - hypothetical protein YpsIP31758_2277 1 None None None 153950410 Common - putative thioredoxin YpsIP31758_3023 213 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 153947184 Common - putative CDP-diacylglycerol pyrophosphatase YpsIP31758_4057 19 COG2134 Cdh, CDP-diacylglycerol pyrophosphatase Lipid metabolism 153947640 Common yfeA chelated iron ABC transporter, periplasmic iron binding protein YfeA YpsIP31758_1705 172 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 153946938 Common - hypothetical protein YpsIP31758_0780 19 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 153947295 Common - hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein YpsIP31758_2790 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 153947642 Common fepC ferric enterobactin ABC transporter, ATP-binding protein FepC YpsIP31758_2444 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 153947752 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_1994 105 COG0583 LysR, Transcriptional regulator Transcription 153948712 Common - hypothetical protein YpsIP31758_0202 2 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 153948659 Common tal transaldolase YpsIP31758_3472 184 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 153950797 Common artI arginine ABC transporter, periplasmic substrate-binding protein ArtI YpsIP31758_2626 181 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 153949061 Common - peptidase, U32 family YpsIP31758_3583 49 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 153949674 Common - putative N-acetylmannosamine kinase YpsIP31758_1295 133 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 153949772 Common pcm protein-L-isoaspartate O-methyltransferase YpsIP31758_3295 156 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 153947693 Pathogen asr acid shock protein YpsIP31758_1819 1 None None None 153949573 Common hslR heat shock protein 15 YpsIP31758_3976 107 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 153947946 Pathogen - hypothetical protein YpsIP31758_3514 1 None None None 153950630 Common - MFS transporter, phenyl propionate permease (PPP) family YpsIP31758_1162 74 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 153948386 Common gltB glutamate synthase, large subunit YpsIP31758_0466 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 153949741 Common - peptidase family M22, nonpeptidase-like protein YpsIP31758_2016 172 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 153949282 Common - putative tagatose-6-phosphate ketose/aldose isomerase AgaS YpsIP31758_0941 31 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 153950171 Common nrdG anaerobic ribonucleoside-triphosphate reductase activating protein YpsIP31758_3557 65 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 153949050 Common - oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_3287 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153949921 Common nrdA ribonucleoside-diphosphate reductase, alpha subunit YpsIP31758_2769 207 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 153949873 Common - oxidoreductase, 2OG-Fe(II) oxygenase family YpsIP31758_2663 53 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 153948965 Common hmuS hemin transport protein HmuS YpsIP31758_3802 40 COG3720 HemS, Putative heme degradation protein Inorganic ion transport and metabolism 153947865 Common - hypothetical protein YpsIP31758_3104 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 153950386 Common - IS1541, transposase YpsIP31758_1673 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 153948031 Common rfaH transcriptional activator RfaH YpsIP31758_0279 30 COG0250 NusG, Transcription antiterminator Transcription 153950666 Common cheA chemotaxis protein CheA YpsIP31758_1638 149 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 153948778 Common rep ATP-dependent DNA helicase Rep YpsIP31758_0175 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 153950096 Pathogen - hypothetical protein YpsIP31758_1914 2 None None None 153949432 Common atpH ATP synthase F1, delta subunit YpsIP31758_4179 175 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 153949039 Common sufB FeS assembly protein SufB YpsIP31758_1742 186 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 153950220 Pathogen - hypothetical protein YpsIP31758_1550 2 None None None 153949059 Pathogen - hypothetical protein YpsIP31758_2528 1 None None None 153950623 Common glpK glycerol kinase YpsIP31758_0101 178 COG0554 GlpK, Glycerol kinase Energy production and conversion 153948784 Common narP nitrate/nitrite response regulator protein NarP YpsIP31758_1270 224 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 153948677 Common - phage protein GP46 YpsIP31758_2734 18 COG4381 COG4381, Mu-like prophage protein gp46 Function unknown 153950680 Common sspA stringent starvation protein A YpsIP31758_0462 102 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 153948752 Common cysU sulfate/thiosulfate ABC transporter, permease protein CysT YpsIP31758_1300 225 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 153949002 Common - putative tellurium resistance protein YpsIP31758_0508 25 COG4245 TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain General function prediction only 153950043 Pathogen - putative lipoprotein YpsIP31758_1806 1 COG3042 Hlx, Putative hemolysin General function prediction only 153949662 Common - aminotransferase, class I and II YpsIP31758_2148 215 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 153950679 Common rpiB ribose 5-phosphate isomerase B YpsIP31758_3289 128 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 153950239 Common idnR L-idonate regulatory protein YpsIP31758_1473 128 COG1609 PurR, Transcriptional regulators Transcription 153950593 Pathogen - hypothetical protein YpsIP31758_0515 5 None None None 153947668 Common kdgM2 oligogalacturonate-specific porin protein KdgM YpsIP31758_1687 12 None None None 153949476 Common - putative azaleucine resistance protein AzlC YpsIP31758_3198 101 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 153948011 Common napF ferredoxin-type protein NapF YpsIP31758_1271 62 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 153948114 Pathogen - hypothetical protein YpsIP31758_3061 1 None None None 153948335 Common - mce family protein YpsIP31758_0450 97 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 153948519 Pathogen - hypothetical protein YpsIP31758_0108 1 None None None 153950334 Common gmd GDP-mannose 4,6-dehydratase YpsIP31758_3041 227 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 153948689 Pathogen - hypothetical protein YpsIP31758_3711 3 None None None 153948939 Common - tetratricopeptide repeat protein YpsIP31758_1915 65 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 153948470 Common - hypothetical protein YpsIP31758_1521 24 None None None 153950193 Common - Ail/Lom family protein YpsIP31758_2257 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 153947373 Common - hypothetical protein YpsIP31758_0726 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 153950637 Common gmhB D,D-heptose 1,7-bisphosphate phosphatase YpsIP31758_1044 133 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 153949669 Common tatA2 twin arginine-targeting protein translocase TatA YpsIP31758_2956 16 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 153947633 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YpsIP31758_3341 202 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 153950141 Common ftsN cell division protein FtsN YpsIP31758_0114 24 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 153947303 Common sufS cysteine desulfurase YpsIP31758_1745 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 153949718 Common - hypothetical protein YpsIP31758_3742 22 None None None 153949688 Pathogen - hypothetical protein YpsIP31758_0664 1 None None None 153949019 Common - mechanosensitive ion channel domain protein YpsIP31758_3664 168 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 153950588 Common - type II secretion system protein YpsIP31758_0597 20 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 153949077 Common - OmpA family protein YpsIP31758_4135 162 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 153947351 Common prfA peptide chain release factor 1 YpsIP31758_2066 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 153947956 Common - transcriptional regulator, TetR family YpsIP31758_1763 71 COG1309 AcrR, Transcriptional regulator Transcription 153947964 Pathogen - hypothetical protein YpsIP31758_0902 2 None None None 153947462 Common - hypothetical protein YpsIP31758_2263 27 COG2822 COG2822, Predicted periplasmic lipoprotein involved in iron transport Inorganic ion transport and metabolism 153950733 Common - putative sugar-binding domain protein YpsIP31758_3284 67 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 153948029 Common lacY lactose permease YpsIP31758_2394 40 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 153949823 Common eno phosphopyruvate hydratase YpsIP31758_3316 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 153947696 Common - putative sugar ABC transporter, periplasmic sugar-binding protein YpsIP31758_0147 112 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 153947937 Common - putative thioesterase YpsIP31758_0687 50 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 153948812 Common trkH Trk system potassium uptake protein TrkH YpsIP31758_0286 156 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 153948992 Common maf2 septum formation protein Maf YpsIP31758_0401 197 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 153947848 Common cutC copper homeostasis protein CutC YpsIP31758_2040 58 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 153949235 Common - hypothetical protein YpsIP31758_3486 15 None None None 153950374 Common chb chitobiase YpsIP31758_2903 45 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 153949440 Common ibpA small heat shock protein IbpA YpsIP31758_4143 66 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 153947592 Common - ATP-dependent RNA helicase, DEAD/DEAH box family YpsIP31758_3590 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 153949813 Pathogen - hypothetical protein YpsIP31758_1076 1 None None None 153950646 Common - site-specific recombinase, phage integrase family YpsIP31758_3540 101 COG0582 XerC, Integrase DNA replication, recombination, and repair 153950818 Common - cupin domain protein YpsIP31758_2087 67 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 153949522 Common - putative cytochrome C assembly protein YpsIP31758_3231 62 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 153949190 Common - putative ABC aliphatic sulfonates transporter, permease subunit YpsIP31758_0355 192 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 153947742 Common glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing YpsIP31758_4173 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 153948579 Common xylG D-xylose transport ATP-binding protein xylG YpsIP31758_4100 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153949057 Pathogen - hypothetical protein YpsIP31758_1416 1 None None None 153950881 Common - sugar-binding transcriptional regulator, LacI family YpsIP31758_0707 125 COG1609 PurR, Transcriptional regulators Transcription 153947313 Common - methyltransferase, HemK family YpsIP31758_1404 218 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 153948835 Common ogl oligogalacturonide lyase YpsIP31758_1682 17 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 153947676 Common - pyridoxal-dependent decarboxylase domain protein YpsIP31758_2448 123 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 153947121 Common - alcohol dehydrogenase, iron-containing YpsIP31758_0587 168 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 153947036 Pathogen - hypothetical protein YpsIP31758_1695 1 None None None 153947274 Common - hypothetical protein YpsIP31758_0140 15 None None None 153950902 Pathogen - putative enterobacterial membrane protein YpsIP31758_0160 6 None None None 153949913 Common - Fusaric acid resistance domain protein YpsIP31758_0534 18 COG1289 COG1289, Predicted membrane protein Function unknown 153950727 Pathogen - hypothetical protein YpsIP31758_1822 1 None None None 153950307 Common - methyl-accepting chemotaxis transducer/sensory box protein YpsIP31758_1492 165 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 153947290 Common - hypothetical protein YpsIP31758_2102 5 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 153947160 Common - oxidoreductase FAD/NAD binding/2Fe-2S iron-sulfur cluster binding domain protein YpsIP31758_1517 108 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 153947357 Common - putative toxin protein YpsIP31758_1823 25 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153947167 Common yfeD chelated iron ABC transporter, permease protein YfeD YpsIP31758_1702 193 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 153949601 Pathogen - hypothetical protein YpsIP31758_1478 1 None None None 153950835 Common - hypothetical protein YpsIP31758_2305 32 COG1598 COG1598, Uncharacterized conserved protein Function unknown 153947350 Common ansB L-asparaginase II YpsIP31758_2586 137 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 153948587 Common manB1 phosphomannomutase YpsIP31758_3037 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 153949829 Common terD tellurium resistance protein YpsIP31758_3785 30 COG2310 TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 Signal transduction mechanisms 153946856 Common ilvD dihydroxy-acid dehydratase YpsIP31758_0157 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 153950225 Common - hypothetical protein YpsIP31758_3674 14 None None None 153950619 Common - hypothetical protein YpsIP31758_3691 6 COG5435 COG5435, Uncharacterized conserved protein Function unknown 153948042 Common - hypothetical protein YpsIP31758_2006 75 COG2983 COG2983, Uncharacterized conserved protein Function unknown 153948869 Common rpsM ribosomal protein S13 YpsIP31758_3893 248 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 153949575 Pathogen - lateral flagellar export/assembly protein YpsIP31758_0628 4 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 153949685 Common - hypothetical protein YpsIP31758_3628 14 None None None 153946871 Common hutH histidine ammonia-lyase YpsIP31758_4085 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 153948047 Common tusE sulfurtransferase TusE YpsIP31758_2529 60 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 153949458 Common - hypothetical protein YpsIP31758_0091 36 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 153947601 Common glnK glutamine synthetase regulation protein YpsIP31758_3078 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 153950879 Common - Smr domain protein YpsIP31758_1403 70 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 153949531 Common msbA lipid A export permease/ATP-binding protein MsbA YpsIP31758_2577 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 153950155 Common - transcriptional regulator, GntR family YpsIP31758_2176 125 COG2188 PhnF, Transcriptional regulators Transcription 153949859 Common - hypothetical protein YpsIP31758_2496 6 None None None 153947250 Common - hypothetical protein YpsIP31758_4048 84 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 153946885 Common - RepB plasmid partitioning protein YpsIP31758_0772 25 COG1475 Spo0J, Predicted transcriptional regulators Transcription 153949643 Common ttg2D toluene tolerance protein Ttg2D YpsIP31758_0451 73 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 153950771 Common greB transcription elongation factor GreB YpsIP31758_3981 192 COG0782 GreA, Transcription elongation factor Transcription 153948881 Common ddhC CDP-4-keto-6-deoxy-D-glucose-3-dehydrase YpsIP31758_3049 193 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 153947713 Common - hypothetical protein YpsIP31758_3426 5 None None None 153947443 Common dgkA diacylglycerol kinase YpsIP31758_3771 76 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 153948475 Common fdoG aerobic formate dehydrogenase, alpha subunit, proteobacterial-type YpsIP31758_4119 186 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 153950182 Common - substrate-binding transcriptional regulator, LysR family YpsIP31758_1754 172 COG0583 LysR, Transcriptional regulator Transcription 153949264 Pathogen - hypothetical protein YpsIP31758_1879 1 None None None 153949206 Common - type IV prepilin peptidase family YpsIP31758_0603 21 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 153949842 Common pabB para-aminobenzoate synthase, component I YpsIP31758_2353 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 153948228 Common ribF riboflavin biosynthesis protein RibF YpsIP31758_3461 211 COG0196 RibF, FAD synthase Coenzyme metabolism 153948743 Common ntrC nitrogen regulation protein NR(I) YpsIP31758_0025 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153948663 Common aroE shikimate 5-dehydrogenase YpsIP31758_3877 222 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 153947106 Common lsrA autoinducer AI-2 ABC transporter, ATP binding protein YpsIP31758_3521 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 153947817 Common - lrgA family protein YpsIP31758_2460 49 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 153950253 Common cheW chemotaxis protein CheW YpsIP31758_1639 121 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 153950571 Pathogen - hypothetical protein YpsIP31758_2780 3 None None None 153948623 Common - iron chelate ABC transporter (FeCT) family, ATP-binding protein YpsIP31758_2633 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 153947620 Common - glutathione S-transferase YpsIP31758_1775 107 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 153950860 Common - hypothetical protein YpsIP31758_0317 45 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 153950039 Common cat2 4-hydroxybutyrate coenzyme A transferase YpsIP31758_2158 101 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 153950298 Common - transcriptional regulator, GntR family YpsIP31758_0011 135 COG2186 FadR, Transcriptional regulators Transcription 153947458 Common celF 6-phospho-beta-glucosidase YpsIP31758_3951 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 153947529 Common fliA2 flagellar operon sigma factor , sigma-28 YpsIP31758_0660 178 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 153947080 Common - hypothetical protein YpsIP31758_0894 2 None None None 153947215 Common - putative protein CysZ YpsIP31758_1319 44 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 153948999 Common phnC phosphonate ABC transporter, ATP-binding protein YpsIP31758_2799 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 153949123 Common - phospho-2-dehydro-3-deoxyheptonate aldolase YpsIP31758_2862 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 153947983 Common ansA L-asparaginase I YpsIP31758_1983 134 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 153950710 Common - hypothetical protein YpsIP31758_3790 15 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 153947381 Common exbD tonB system transport protein ExbD YpsIP31758_0592 142 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 153947520 Common - hypothetical protein YpsIP31758_0774 19 COG2979 COG2979, Uncharacterized protein conserved in bacteria Function unknown 153950936 Common fis DNA-binding protein Fis YpsIP31758_0385 98 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 153950778 Common - hypothetical protein YpsIP31758_1185 46 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 153949849 Common tatB twin arginine-targeting protein translocase TatB YpsIP31758_0275 23 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 153947784 Common yntC nickel ABC transporter, permease protein YpsIP31758_1073 211 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 153950066 Common flhE flagellar protein FlhE YpsIP31758_2332 9 None None None 153949498 Common - GDSL-like lipase/acylhydrolase family protein YpsIP31758_3021 99 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 153947749 Common rsgA ribosome small subunit-dependent GTPase A YpsIP31758_3662 163 COG1162 COG1162, Predicted GTPases General function prediction only 153949986 Common - hypothetical protein YpsIP31758_1001 46 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 153947608 Common acrR transcriptional regulator AcrR YpsIP31758_3066 89 COG1309 AcrR, Transcriptional regulator Transcription 153948838 Common pgl 6-phosphogluconolactonase YpsIP31758_2846 53 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 153950117 Common - hypothetical protein YpsIP31758_3450 39 COG3610 COG3610, Uncharacterized conserved protein Function unknown 153950761 Common - NmrA family protein YpsIP31758_3799 60 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 153947327 Common gspL general secretion pathway protein L YpsIP31758_0960 13 COG3297 PulL, Type II secretory pathway, component PulL Intracellular trafficking and secretion 153947297 Common - D-alanyl-D-alanine carboxypeptidase family protein YpsIP31758_1254 23 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 153949198 Common hda DnaA-like protein YpsIP31758_1237 184 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 153947145 Pathogen - hypothetical protein YpsIP31758_1471 1 None None None 153947901 Common - efflux transporter, RND family, MFP subunit YpsIP31758_3586 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 153949592 Common - cold shock protein YpsIP31758_1070 182 COG1278 CspC, Cold shock proteins Transcription 153950522 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A YpsIP31758_0017 141 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 153948771 Common - methylated-DNA-[protein]-cysteine S-methyltransferase family protein YpsIP31758_3074 145 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 153947189 Common - putative transketolase. N-terminal subunit YpsIP31758_3249 222 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 153948257 Common - hypothetical protein YpsIP31758_2082 51 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 153948413 Common - putative serine transporter YpsIP31758_3807 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 153947227 Common - rhodanese domain protein YpsIP31758_1560 134 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 153948768 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase YpsIP31758_3343 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 153947941 Common - putative lipoprotein YpsIP31758_3075 32 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 153946831 Common tatD deoxyribonuclease TatD YpsIP31758_0277 230 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 153950282 Common - PAAR domain protein YpsIP31758_0903 18 COG4104 COG4104, Uncharacterized conserved protein Function unknown 153949884 Pathogen - hypothetical protein YpsIP31758_1596 4 None None None 153948605 Common hrpA ATP-dependent helicase HrpA YpsIP31758_1815 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 153950574 Pathogen - hypothetical protein YpsIP31758_3547 1 None None None 153949130 Common - hypothetical protein YpsIP31758_2800 35 COG2261 COG2261, Predicted membrane protein Function unknown 153947826 Common - short-chain dehydrogenase/reductase family protein YpsIP31758_2519 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 153949869 Common - putative lipoprotein YpsIP31758_2548 22 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 153949271 Common menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase YpsIP31758_0111 95 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 153949165 Common - amino acid permease family protein YpsIP31758_0194 119 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 153950023 Pathogen - hypothetical protein YpsIP31758_2266 1 None None None 153949951 Common argA amino-acid N-acetyltransferase YpsIP31758_0993 203 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 153946980 Common - nitroreductase family protein YpsIP31758_1981 78 COG0778 NfnB, Nitroreductase Energy production and conversion 153950475 Common - hypothetical protein YpsIP31758_2104 54 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 153950455 Common rrmJ ribosomal RNA large subunit methyltransferase J YpsIP31758_3603 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 153947045 Common - putative hexulose-6-phosphate isomerase YpsIP31758_3269 22 COG3623 SgaU, Putative L-xylulose-5-phosphate 3-epimerase Carbohydrate transport and metabolism 153947548 Common - hypothetical protein YpsIP31758_1256 100 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 153949390 Pathogen - hypothetical protein YpsIP31758_2425 3 None None None 153947263 Common - putative methyltransferase YpsIP31758_2039 55 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 153949807 Common fpr ferredoxin--NADP reductase YpsIP31758_0099 109 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 153948985 Common - transcriptional regulator, LuxR family YpsIP31758_1547 51 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 153947888 Common - ImpA domain protein YpsIP31758_0327 18 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153949229 Common gsk inosine-guanosine kinase YpsIP31758_3035 58 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 153947422 Common fadB fatty oxidation complex, alpha subunit FadB YpsIP31758_0283 190 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 153949525 Common ligT 2'-5' RNA ligase YpsIP31758_3336 40 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 153948433 Pathogen - hypothetical protein YpsIP31758_3795 3 None None None 153949624 Common genX lysyl-tRNA synthetase-like protein YpsIP31758_3665 219 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 153946975 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase UbiE YpsIP31758_0271 219 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153948464 Common corA magnesium and cobalt transport protein CorA YpsIP31758_0214 131 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 153948189 Common - hypothetical protein YpsIP31758_0483 19 COG4575 ElaB, Uncharacterized conserved protein Function unknown 153948118 Common maeB NADP-dependent malic enzyme YpsIP31758_1277 216 COG0281 SfcA, Malic enzyme Energy production and conversion 153946899 Common rph ribonuclease PH YpsIP31758_0056 201 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 153949544 Common - AMP binding protein YpsIP31758_3402 211 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 153947210 Common - hypothetical protein YpsIP31758_3375 43 COG4582 COG4582, Uncharacterized protein conserved in bacteria Function unknown 153949287 Common fabH 3-oxoacyl-[acyl-carrier-protein] synthase III YpsIP31758_1576 225 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 153949653 Pathogen - hypothetical protein YpsIP31758_2996 1 None None None 153950315 Common rrmA ribosomal RNA large subunit methyltransferase A YpsIP31758_2376 63 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 153947197 Common lepA GTP-binding protein LepA YpsIP31758_1134 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 153949834 Common - type IV secretion system protein YpsIP31758_3731 156 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 153946861 Common - putative cytochrome c-type biogenesis protein YpsIP31758_1394 91 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 153949903 Common lipA lipoic acid synthetase YpsIP31758_2955 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 153949972 Common - Div-like protein YpsIP31758_1414 10 None None None 153949182 Common - oxidoreductase, NAD-binding YpsIP31758_2974 176 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 153950674 Common dprA DNA protecting protein DprA YpsIP31758_3881 210 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 153949317 Common - conserved hypothetical protein TIGR00486 YpsIP31758_1114 102 COG0327 COG0327, Uncharacterized conserved protein Function unknown 153946940 Common gph1 sugar (Glycoside-Pentoside-Hexuronide) transporter YpsIP31758_0709 75 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 153947531 Common - conserved hypothetical protein TIGR00258 YpsIP31758_3483 35 COG1986 COG1986, Uncharacterized conserved protein Function unknown 153950925 Pathogen - hypothetical protein YpsIP31758_2602 1 None None None 153949862 Common - purine nucleotide synthesis repressor YpsIP31758_1755 128 COG1609 PurR, Transcriptional regulators Transcription 153950094 Common - hypothetical protein YpsIP31758_1765 26 COG3313 COG3313, Predicted Fe-S protein General function prediction only 153948172 Common - hypothetical protein YpsIP31758_0526 10 COG3459 COG3459, Cellobiose phosphorylase Carbohydrate transport and metabolism 153949538 Common - putative invasin YpsIP31758_4008 181 None None None 153949926 Pathogen - hypothetical protein YpsIP31758_1345 5 None None None 153949518 Common - ABC transporter, permease protein YpsIP31758_1259 199 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 153950102 Common - hypothetical protein YpsIP31758_4089 3 None None None 153946900 Common - hypothetical protein YpsIP31758_1665 23 COG5430 COG5430, Uncharacterized secreted protein Function unknown 153950612 Common - UDP-N-acetylglucosamine 2-epimerase YpsIP31758_0184 155 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 153948488 Common - integral membrane protein YpsIP31758_1415 89 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 153950856 Common recC exodeoxyribonuclease V, gamma subunit YpsIP31758_0989 65 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 153947923 Common tdk thymidine kinase YpsIP31758_1964 94 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 153947061 Common - GumN family protein YpsIP31758_3028 43 COG3735 COG3735, Uncharacterized protein conserved in bacteria Function unknown 153948959 Common arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YpsIP31758_1723 200 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 153947878 Pathogen - hypothetical protein YpsIP31758_3744 3 None None None 153947580 Common rhaT L-rhamnose-proton symporter YpsIP31758_3752 14 None None None 153949153 Common rseC sigma-E factor regulatory protein RseC YpsIP31758_1132 28 COG3086 RseC, Positive regulator of sigma E activity Signal transduction mechanisms 153947284 Common - glycosyl hydrolase, family 88 YpsIP31758_0933 20 COG4225 COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins General function prediction only 153948291 Common fliR1 flagellar biosynthetic protein FliR YpsIP31758_2304 115 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 153948104 Common rsd regulator of sigma D YpsIP31758_3852 24 COG3160 Rsd, Regulator of sigma D Transcription 153948358 Common glpX fructose-1,6-bisphosphatase, class II YpsIP31758_0100 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 153950742 Common alr1 alanine racemase YpsIP31758_1652 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 153949756 Common - ImpA domain protein YpsIP31758_0325 22 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 153948925 Common - dihydrouridine synthase YpsIP31758_0386 214 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 153949733 Common nudG CTP pyrophosphohydrolase YpsIP31758_1977 171 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 153947599 Common ubiC chorismate--pyruvate lyase YpsIP31758_3774 33 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 153948140 Common - adenylate cyclase YpsIP31758_0562 48 COG3025 COG3025, Uncharacterized conserved protein Function unknown 153949664 Common nirB nitrite reductase [NAD(P)H], large subunit YpsIP31758_3956 200 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 153946962 Common - IS10, transposase YpsIP31758_2541 19 None None None 153950300 Common - putative twin-argninine leader-binding DmsD YpsIP31758_3258 23 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 153948341 Common - hypothetical protein YpsIP31758_0252 3 None None None 153946909 Common glpT glycerol-3-phosphate transporter YpsIP31758_0225 89 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 153950484 Common murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YpsIP31758_3387 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 153947657 Common lrhA transcriptional regulator LrhA YpsIP31758_1452 182 COG0583 LysR, Transcriptional regulator Transcription 153947405 Pathogen - hypothetical protein YpsIP31758_2388 1 None None None 153948737 Common - putative lipoprotein YpsIP31758_1290 10 None None None 153950110 Common - putative transposase YpsIP31758_0086 30 COG5464 COG5464, Uncharacterized conserved protein Function unknown 153948903 Common rhtB homoserine Rht transporter RhtB YpsIP31758_0220 87 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 153947095 Common - surface antigen domain protein YpsIP31758_1597 24 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 153948569 Pathogen - hypothetical protein YpsIP31758_2938 1 None None None 153950848 Common - dioxygenase, ARD/ARD' family YpsIP31758_3180 37 COG1791 COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 153947282 Common - haemagglutination domain protein YpsIP31758_3174 140 None None None 153947543 Common sugE quaternary ammonium compound-resistance protein SugE YpsIP31758_3671 146 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 153950394 Common adiA biodegradative arginine decarboxylase YpsIP31758_2781 86 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 153947054 Common - hypothetical protein YpsIP31758_0767 4 None None None 153949144 Common zraR transcriptional regulatory protein ZraR YpsIP31758_2820 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 153950496 Common - putative ABC transporter, periplasmic binding protein YpsIP31758_3084 61 COG4533 COG4533, ABC-type uncharacterized transport system, periplasmic component General function prediction only 153948007 Common - polysaccharide deacetylase family protein YpsIP31758_3346 83 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 153948862 Common tsf translation elongation factor Ts YpsIP31758_1014 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 153950340 Common - hypothetical protein YpsIP31758_1624 12 None None None 153949259 Common rpsA ribosomal protein S1 YpsIP31758_2580 217 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 153948542 Common - mannitol dehydrogenase family protein YpsIP31758_2702 88 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 153950438 Common - phosphocarrier, HPr family YpsIP31758_1317 138 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 153949011 Common - hypothetical protein YpsIP31758_2933 17 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 153948803 Common - putative membrane protein Smp YpsIP31758_3494 17 COG3726 AhpA, Uncharacterized membrane protein affecting hemolysin expression General function prediction only 153948034 Common - glutamine cyclotransferase YpsIP31758_0172 22 COG3823 COG3823, Glutamine cyclotransferase Posttranslational modification, protein turnover, chaperones 153948715 Common - hypothetical protein YpsIP31758_0602 6 None None None 153950503 Common spoT guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YpsIP31758_0039 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 153950514 Pathogen - type IV prepilin peptidase YpsIP31758_3728 3 None None None 153950722 Common degP protease Do YpsIP31758_3323 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 153949878 Common fliD1 flagellar hook-associated protein 2 YpsIP31758_0655 78 COG1345 FliD, Flagellar capping protein Cell motility and secretion 153950007 Pathogen - hypothetical protein YpsIP31758_1877 1 None None None 153948896 Pathogen - hypothetical protein YpsIP31758_1949 1 None None None 153947555 Common mdoG periplasmic glucans biosynthesis protein MdoG YpsIP31758_1552 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 153947515 Common - hypothetical protein YpsIP31758_0425 61 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 153948166 Common secB protein-export chaperone SecB YpsIP31758_0078 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 153948309 Common - hypothetical protein YpsIP31758_4012 4 None None None 153950596 Pathogen - hypothetical protein YpsIP31758_0965 1 None None None 153947973 Common - hypothetical protein YpsIP31758_0390 18 COG3924 COG3924, Predicted membrane protein Function unknown 153950347 Common - hypothetical protein YpsIP31758_0874 11 None None None 153948874 Pathogen - hypothetical protein YpsIP31758_2827 1 None None None 153948090 Pathogen - hypothetical protein YpsIP31758_2701 1 None None None 153949752 Pathogen - hypothetical protein YpsIP31758_3689 6 None None None 153948275 Common pyrH uridylate kinase YpsIP31758_1015 236 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 153950446 Common dld D-lactate dehydrogenase YpsIP31758_2805 45 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 153949101 Common - RHS/YD repeat protein YpsIP31758_0333 69 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 153948843 Common - type II/III secretion system protein YpsIP31758_0601 139 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 153950556 Common - hypothetical protein YpsIP31758_1916 21 COG3771 COG3771, Predicted membrane protein Function unknown 153947507 Common - FAD dependent oxidoreductase YpsIP31758_1410 89 COG4121 COG4121, Uncharacterized conserved protein Function unknown 153947650 Common rhiA protein RhiA YpsIP31758_1480 4 None None None 153948680 Common - hypothetical protein YpsIP31758_2081 10 COG0716 FldA, Flavodoxins Energy production and conversion 153950286 Common - hypothetical protein YpsIP31758_0802 13 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 153947324 Common - pyridine nucleotide-disulphide oxidoreductase family protein YpsIP31758_1310 244 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 153948590 Common - Fe-S metabolism associated protein YpsIP31758_0997 95 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 153949299 Common - N-acetylmuramoyl-L-alanine amidase, family 3 YpsIP31758_3656 182 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 153950532 Common parE DNA topoisomerase IV, B subunit YpsIP31758_0578 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 153949070 Common - transglycosylase slt family protein YpsIP31758_1706 102 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 153949678 Common frdB fumarate reductase, iron-sulfur protein YpsIP31758_3668 208 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion