Parabacteroides distasonis ATCC 8503, complete genome NC_009615 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 150006726 Pathogen - hypothetical protein BDI_0052 1 None None None 150009904 Common - hypothetical protein BDI_3321 4 None None None 150007866 Common - hypothetical protein BDI_1226 79 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 150006949 Common - 2-dehydro-3-deoxyphosphooctonate aldolase BDI_0285 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 150006847 Common - pantothenate kinase BDI_0179 134 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 150008289 Common - hypothetical protein BDI_1658 5 None None None 150009679 Common - dipeptidyl peptidase IV BDI_3094 103 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150006840 Common - thiamine biosynthesis lipoprotein ApbE BDI_0171 135 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 150008783 Common - hypothetical protein BDI_2173 135 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 150008062 Pathogen - hypothetical protein BDI_1425 1 None None None 150007405 Common - hypothetical protein BDI_0756 4 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 150008330 Common - Na+/H+ antiporter BDI_1699 145 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 150009113 Common - hypothetical protein BDI_2514 5 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150009511 Common - putative Fe-S oxidoreductase BDI_2924 39 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 150007532 Pathogen - hypothetical protein BDI_0885 1 None None None 150010310 Common - arginine/ornithine transport system ATPase BDI_3744 101 COG1703 ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family Amino acid transport and metabolism 150009176 Common - redox-sensing transcriptional repressor Rex BDI_2578 56 COG2344 COG2344, AT-rich DNA-binding protein General function prediction only 150008605 Common - hypothetical protein BDI_1991 4 None None None 150009301 Common - putative exported serine protease, subtilase family BDI_2703 71 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 150008026 Common - putative N-acetylglucosamine transferase BDI_1389 37 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 150008531 Common - biotin synthesis protein, BioC BDI_1917 102 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 150006800 Common - putative capsular polysaccharide biosynthesis protein BDI_0126 135 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150008414 Common - putative 2', 3'-cyclic nucleotide 2'-phosphodiesterase BDI_1795 131 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 150007644 Pathogen - hypothetical protein BDI_0999 1 None None None 150008211 Common - putative UDP-GlcNAc 2-epimerase BDI_1577 153 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 150008616 Common - acyltransferase family protein BDI_2002 32 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 150007636 Common - prolyl-tRNA synthetase BDI_0989 249 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150008092 Common - hypothetical protein BDI_1456 8 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009121 Common - putative alanyl dipeptidyl peptidase BDI_2522 108 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150009477 Common - Na+-dependent transporter BDI_2890 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 150008542 Common - putative RNA polymerase ECF-type sigma factor BDI_1928 41 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150006858 Common - hypothetical protein BDI_0190 22 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 150009519 Pathogen - hypothetical protein BDI_2932 2 None None None 150007452 Common - cation efflux system protein BDI_0803 125 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150008446 Common - putative GMP synthase BDI_1828 238 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 150009127 Common - hypothetical protein BDI_2528 12 COG1409 Icc, Predicted phosphohydrolases General function prediction only 150008666 Pathogen - hypothetical protein BDI_2056 2 None None None 150010414 Common - hypothetical protein BDI_3854 118 COG1285 SapB, Uncharacterized membrane protein Function unknown 150008801 Pathogen - hypothetical protein BDI_2191 3 None None None 150006869 Common - hypothetical protein BDI_0203 7 COG5512 COG5512, Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives General function prediction only 150007038 Common - AcrB/AcrD family multidrug resistance protein BDI_0381 156 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150008660 Common - putative NADH-dependent dyhydrogenase BDI_2050 151 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150009151 Pathogen - hypothetical protein BDI_2553 2 None None None 150009959 Common - ribosome-associated GTPase BDI_3377 163 COG1162 COG1162, Predicted GTPases General function prediction only 150010187 Pathogen - putative transcriptional regulator UpxY-like protein BDI_3610 2 COG0250 NusG, Transcription antiterminator Transcription 150009273 Common ddl D-alanyl-alanine synthetase A BDI_2675 211 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 150009951 Common - phosphotransacetylase/phosphate acetyltransferase BDI_3369 161 COG0280 Pta, Phosphotransacetylase Energy production and conversion 150009535 Common - sialate O-acetylesterase BDI_2948 17 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150008529 Common - 8-amino-7-oxononanoate synthase BDI_1915 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 150008527 Common - biotin synthetase BDI_1913 172 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 150010423 Common - hypothetical protein BDI_3863 8 None None None 150010307 Common - 6-phosphofructokinase BDI_3741 140 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 150007904 Pathogen - hypothetical protein BDI_1264 3 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150010000 Common - iron(III) ABC transporter periplasmic iron-binding protein BDI_3419 22 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 150009745 Pathogen - hypothetical protein BDI_3160 2 None None None 150010466 Common - hypothetical protein BDI_3906 24 COG2253 COG2253, Uncharacterized conserved protein Function unknown 150009778 Common - putative DNA processing Smf-like protein BDI_3193 210 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 150006851 Common - putative hemolysin BDI_0183 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 150007541 Pathogen - hypothetical protein BDI_0894 1 None None None 150006704 Common - putative acetyltransferase BDI_0030 213 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150007509 Common - site-specific DNA-methyltransferase BDI_0861 83 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 150009422 Common - 6-phosphofructokinase BDI_2830 161 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 150010207 Common - 3-oxoacyl-[acyl-carrier-protein] reductase BDI_3630 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150008245 Common - hypothetical protein BDI_1611 17 COG3969 COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase General function prediction only 150007825 Common - hypothetical protein BDI_1183 97 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 150008831 Pathogen - hypothetical protein BDI_2221 1 None None None 150008739 Common - hypothetical protein BDI_2129 4 None None None 150009792 Common - succinate dehydrogenase/fumarate reductase iron-sulfur subunit BDI_3208 57 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 150008258 Common - glycoside hydrolase family 92 BDI_1627 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150008805 Common - hypothetical protein BDI_2195 4 None None None 150009419 Common - putative 3-oxoacyl-[acyl-carrier-protein] synthase II BDI_2827 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150007717 Common - aspartate decarboxylase AsdA BDI_1072 15 None None None 150008111 Common - GTP-binding protein LepA BDI_1475 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 150008892 Common - putative aminopeptidase C BDI_2287 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 150007487 Pathogen - hypothetical protein BDI_0838 2 None None None 150009659 Common - putative zinc protease BDI_3074 194 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 150007165 Common - putative UDP-glucose 4-epimerase BDI_0510 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 150008097 Common - ferrous iron transport protein B BDI_1461 182 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 150008010 Common - putative transcriptional regulator BDI_1373 122 COG2606 EbsC, Uncharacterized conserved protein Function unknown 150009626 Common - hypothetical protein BDI_3040 6 None None None 150008608 Common - A/G-specific adenine glycosylase BDI_1994 234 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 150007204 Pathogen - hypothetical protein BDI_0549 2 None None None 150009432 Common - hypothetical protein BDI_2840 10 None None None 150010336 Common - sugar phosphate isomerase/epimerase BDI_3770 35 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150006927 Common - ATP synthase gamma chain BDI_0263 207 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 150008728 Common - putative ribose 5-phosphate isomerase BDI_2118 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 150007942 Common - redox-sensitive transcriptional activator OxyR BDI_1303 189 COG0583 LysR, Transcriptional regulator Transcription 150009472 Pathogen - hypothetical protein BDI_2885 2 None None None 150009916 Common - potassium/proton antiporter BDI_3333 139 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 150010250 Common - MATE efflux family protein BDI_3676 143 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150008176 Common - glycosyltransferase family 2 BDI_1542 206 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 150008628 Common hisH imidazole glycerol phosphate synthase subunit HisH BDI_2016 215 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 150008372 Common - single-stranded-DNA-specific exonuclease RecJ BDI_1746 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 150008953 Common - hypothetical protein BDI_2349 23 COG3055 COG3055, Uncharacterized protein conserved in bacteria Function unknown 150007729 Common - chlorohydrolase family protein BDI_1084 172 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 150010039 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3458 30 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008981 Common rplB 50S ribosomal protein L2 BDI_2377 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 150009697 Common - conserved hypothetical protein with endonuclease/exonuclease/phosphatase family domain BDI_3112 27 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150006809 Common - putative alkaline protease AprF BDI_0140 58 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008183 Common - putative ThiJ family intracellular protease BDI_1549 138 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 150007755 Common - dihydroorotate dehydrogenase electron transfer subunit BDI_1113 116 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 150008195 Pathogen - hypothetical protein BDI_1561 2 None None None 150006968 Common - transposase BDI_0304 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150010236 Common - putative transcriptional regulator BDI_3662 49 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 150008685 Common - putative anti-sigma factor BDI_2075 39 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007511 Pathogen - hypothetical protein BDI_0863 1 None None None 150008906 Pathogen - pantothenate kinase BDI_2301 4 COG5146 PanK, Pantothenate kinase, acetyl-CoA regulated Coenzyme metabolism 150009379 Common - glycosyltransferase family 2 BDI_2787 158 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150008795 Common - hypothetical protein BDI_2185 206 COG0313 COG0313, Predicted methyltransferases General function prediction only 150010498 Pathogen - hypothetical protein BDI_3940 1 None None None 150009427 Common - two-component system response regulator BDI_2835 209 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150009812 Common - glycosyltransferase family 4 BDI_3228 12 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009821 Common - glycosyltransferase family 4 BDI_3237 193 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007390 Common - integrase BDI_0741 145 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150009462 Common - putative dehydrogenase BDI_2875 83 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007113 Common - hypothetical protein BDI_0457 138 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 150008075 Common - 2',3'-cyclic nucleotide 2'-phosphodiesterase BDI_1439 123 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 150009872 Common - GTP-binding protein HflX BDI_3288 231 COG2262 HflX, GTPases General function prediction only 150010023 Common - hypothetical protein BDI_3442 6 None None None 150009838 Common - EcoRI methylase/methyltransferase BDI_3254 5 None None None 150007523 Common - hypothetical protein BDI_0876 2 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 150009936 Common - periplasmic component of efflux system BDI_3353 164 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150008056 Pathogen - hypothetical protein BDI_1419 2 None None None 150006909 Pathogen - putative sodium-dependent transporter BDI_0245 3 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 150007031 Common - TRAP-type C4-dicarboxylate transport system, small permease component BDI_0374 40 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 150008564 Common - outer membrane protein TolC BDI_1950 37 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008630 Common - imidazole glycerol phosphate synthase subunit hisF BDI_2018 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 150008085 Common - putative two-component regulator sensor kinase BDI_1449 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150006744 Common - hypothetical protein BDI_0070 6 None None None 150007569 Common - ABC transporter, ATP-binding protein-related protein BDI_0922 3 None None None 150007397 Pathogen - hypothetical protein BDI_0748 2 None None None 150008860 Common - pyrroline-5-carboxylate reductase BDI_2250 206 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 150006973 Common rpmA 50S ribosomal protein L27 BDI_0309 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 150009500 Common - hypothetical protein BDI_2913 21 None None None 150007045 Common - hypothetical protein BDI_0388 10 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 150007120 Common - probable transcriptional regulator BDI_0464 16 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008497 Common - rod shape-determining protein MreC BDI_1883 107 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 150008990 Pathogen - hypothetical protein BDI_2386 3 None None None 150008080 Pathogen - hypothetical protein BDI_1444 2 None None None 150009894 Common - hypothetical protein BDI_3311 50 COG4804 COG4804, Uncharacterized conserved protein Function unknown 150009038 Common engA GTP-binding protein EngA BDI_2434 240 COG1160 COG1160, Predicted GTPases General function prediction only 150007668 Pathogen - hypothetical protein BDI_1023 1 None None None 150009489 Common - hypothetical protein BDI_2902 50 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 150006961 Pathogen - putative transcriptional regulator UpxY-like protein BDI_0297 2 COG0250 NusG, Transcription antiterminator Transcription 150007126 Common - hypothetical protein BDI_0470 21 None None None 150008732 Common trmE tRNA modification GTPase TrmE BDI_2122 220 COG0486 ThdF, Predicted GTPase General function prediction only 150008278 Common - putrescine transport system permease protein PotH BDI_1647 180 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 150010271 Common - cationic outer membrane protein OmpH BDI_3700 33 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 150008301 Common - carboxylase, putative BDI_1670 154 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 150006900 Common - N-acetylglucosamine-6-phosphate deacetylase BDI_0236 119 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 150007993 Common - putative capsular polysaccharide biosynthesis glycosyltransferase BDI_1355 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150006920 Common - methylated DNA-protein cysteine methyltransferase BDI_0256 218 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 150009269 Common - hypothetical protein BDI_2671 4 None None None 150009652 Common - glycoside hydrolase family 3, candidate beta-glucosidase BDI_3067 128 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150007308 Common - outer membrane protein OmpA BDI_0653 7 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150007557 Common - hypothetical protein BDI_0910 4 None None None 150009757 Common - phosphoribosylaminoimidazole carboxylase, PurE protein BDI_3172 233 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 150009105 Common - methyltransferase BDI_2506 210 COG0313 COG0313, Predicted methyltransferases General function prediction only 150007627 Common - putative hydrolase of the alpha/beta superfamily BDI_0980 67 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 150008116 Common - putative peptidase BDI_1481 135 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150008872 Common - hypothetical protein BDI_2262 27 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150010458 Pathogen - hypothetical protein BDI_3898 2 None None None 150006750 Common - putative biotin carboxylase 1 BDI_0076 230 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 150007061 Pathogen - hypothetical protein BDI_0404 2 None None None 150010090 Common - putative thiol-disulfide isomerase and thioredoxin BDI_3510 67 None None None 150010295 Common - transcriptional regulator BDI_3728 152 COG1522 Lrp, Transcriptional regulators Transcription 150007737 Common - ferredoxin 2 BDI_1095 74 COG4624 COG4624, Iron only hydrogenase large subunit, C-terminal domain General function prediction only 150008470 Common - hypothetical protein BDI_1856 5 None None None 150008755 Common - hypothetical protein BDI_2145 18 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 150010288 Common - asparagine synthetase AsnA BDI_3717 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 150006885 Common - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase BDI_0219 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 150008427 Common - hydrogenase isoenzymes formation protein; HypD BDI_1809 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 150007253 Common - putative anti-sigma factor BDI_0598 35 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150006759 Pathogen - hypothetical protein BDI_0085 1 None None None 150006675 Common dnaA chromosomal replication initiation protein BDI_0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 150007346 Common - alcohol dehydrogenase BDI_0696 168 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 150008342 Common - putative transmembrane cation efflux protein BDI_1716 91 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150008748 Common - integrase BDI_2138 120 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007851 Common - putative bacterial transferase hexapeptide repeat:ADP-glucose pyrophosphorylase BDI_1211 6 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 150007859 Common - hypothetical protein BDI_1219 21 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150009529 Common - renin-binding protein-related protein BDI_2942 28 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 150010443 Pathogen - conserved protein found in conjugate transposon BDI_3883 3 None None None 150009278 Pathogen - hypothetical protein BDI_2680 1 None None None 150009139 Pathogen - hypothetical protein BDI_2540 1 None None None 150010262 Common pyrE orotate phosphoribosyltransferase BDI_3691 157 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 150007564 Common - hemolysin III BDI_0917 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 150006768 Common - thioredoxin peroxidase BDI_0094 226 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150007689 Common - NADH:ubiquinone oxidoreductase subunit BDI_1044 182 COG4624 COG4624, Iron only hydrogenase large subunit, C-terminal domain General function prediction only 150010276 Common - Na+ driven multidrug efflux pump BDI_3705 174 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150006748 Common - outer membrane phospholipase A BDI_0074 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 150007958 Common - glycoside hydrolase family 78 BDI_1319 16 None None None 150009646 Common - hypothetical protein BDI_3061 14 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 150007073 Common - hypothetical protein BDI_0416 31 COG5476 COG5476, Uncharacterized conserved protein Function unknown 150007053 Common - aldo/keto reductase BDI_0396 158 COG1453 COG1453, Predicted oxidoreductases of the aldo/keto reductase family General function prediction only 150009858 Common - hypothetical protein BDI_3274 4 COG4938 COG4938, Uncharacterized conserved protein Function unknown 150008452 Common - putative nucleotide-diphosphate sugar epimerase BDI_1836 191 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150008516 Common - putative dehydrogenase BDI_1902 79 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008317 Common - RNA polymerase ECF-type sigma factor BDI_1686 111 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007778 Common - 2-oxoglutarate decarboxylase and 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase BDI_1136 119 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 150007441 Common - sulfite synthesis pathway protein CysQ BDI_0792 181 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 150007931 Pathogen - hypothetical protein BDI_1292 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150007960 Common - L-rhamnose/H+ symporter BDI_1321 14 None None None 150009520 Pathogen - hypothetical protein BDI_2933 2 None None None 150007620 Common - putative transport-related, exported protein BDI_0973 157 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150006874 Common - 4-alpha-glucanotransferase BDI_0208 33 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 150010097 Pathogen - putative fimbrilin precursor BDI_3517 1 None None None 150008816 Common - glycosyltransferase family 4 BDI_2206 14 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008857 Common - putative mechano-sensitive ion channel BDI_2247 173 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 150010017 Common - putative cation efflux system protein BDI_3436 163 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007989 Common - nucleotidyltransferase family protein BDI_1351 189 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 150010249 Common - iron(III) ABC transporter ATP-binding protein BDI_3675 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 150007361 Common - carboxymuconolactone decarboxylase BDI_0712 79 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 150006824 Common nadD nicotinic acid mononucleotide adenyltransferase BDI_0155 186 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 150006916 Pathogen - hypothetical protein BDI_0252 1 None None None 150010366 Common ruvC Holliday junction resolvase BDI_3803 198 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 150008106 Common - glycosyltransferase family 4 BDI_1470 202 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007236 Common - hypothetical protein BDI_0581 26 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150007613 Common hisG ATP phosphoribosyltransferase BDI_0966 212 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 150009739 Common - putative Na+-dependent phosphate transporter BDI_3154 89 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 150009333 Common - putative signal transduction histidine kinase BDI_2740 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009342 Common - two-component system sensor histidine kinase/response regulator, hybrid BDI_2749 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007464 Common - uridine kinase BDI_0815 86 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 150010029 Pathogen - hypothetical protein BDI_3448 2 None None None 150008008 Common - two-component system sensor histidine kinase BDI_1371 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008778 Pathogen - hypothetical protein BDI_2168 3 None None None 150007921 Common - putative acetyl transferase BDI_1282 203 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150007894 Pathogen - hypothetical protein BDI_1254 1 None None None 150008582 Pathogen - hypothetical protein BDI_1968 1 None None None 150006737 Pathogen - putative transmembrane protein BDI_0063 2 None None None 150009262 Common - 1-deoxy-D-xylulose-5-phosphate synthase BDI_2664 227 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 150008640 Common - hypothetical protein BDI_2028 76 COG1284 COG1284, Uncharacterized conserved protein Function unknown 150007772 Common - putative inner membrane protein BDI_1130 35 COG3681 COG3681, Uncharacterized conserved protein Function unknown 150010071 Common tsf elongation factor Ts BDI_3490 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 150007131 Common - phosphinothricin N-acetyltransferase, putative BDI_0475 129 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 150009553 Common - adenine deaminase BDI_2966 70 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 150008999 Common clpX ATP-dependent protease ATP-binding subunit BDI_2395 224 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 150008549 Common - putative permease BDI_1935 25 COG2510 COG2510, Predicted membrane protein Function unknown 150009783 Pathogen - hypothetical protein BDI_3199 1 None None None 150009083 Common - cell division protein FtsA BDI_2484 177 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 150010331 Common - elongation factor G BDI_3765 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 150009391 Pathogen - hypothetical protein BDI_2799 2 None None None 150007096 Common - putative glycosyltransferase BDI_0439 17 None None None 150008502 Common - conserved hypothetical protein, putative ATPase involved in DNA repair BDI_1888 11 None None None 150007743 Common - ABC transporter, ATP-binding protein BDI_1101 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 150008133 Common - transcriptional regulator BDI_1498 85 COG1309 AcrR, Transcriptional regulator Transcription 150008823 Common - glycosyltransferase family 2 BDI_2213 196 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150006830 Common - biotin carboxyl carrier protein BDI_0161 212 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 150009404 Common - glycosyltransferase family 2 BDI_2812 34 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150006798 Common - polysaccharide export outer membrane protein BDI_0124 59 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150007291 Common - putative integral membrane protein BDI_0636 63 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 150009221 Common - putative histone-like protein BDI_2623 148 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150008218 Common - glycosyltransferase family 2 BDI_1584 207 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009445 Common - hypothetical protein BDI_2853 6 None None None 150009607 Common - putative Fe-S oxidoreductase BDI_3020 47 COG0731 COG0731, Fe-S oxidoreductases Energy production and conversion 150009638 Common - alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase BDI_3052 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 150009171 Common - two-component system sensor histidine kinase BDI_2573 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007244 Common - anthranilate phosphoribosyltransferase BDI_0589 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 150010386 Pathogen - conserved hypothetical protein, putative glycosyltransferase BDI_3823 1 None None None 150009982 Common - putative TonB-linked outer membrane receptor BDI_3401 113 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150010340 Common - glycoside hydrolase family 13, candidate alpha-glycosidase BDI_3774 118 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 150010510 Common - cobinamide kinase BDI_3957 129 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 150008364 Common - putative cation efflux pump BDI_1738 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150008361 Common - hypothetical protein BDI_1735 30 COG2839 COG2839, Uncharacterized protein conserved in bacteria Function unknown 150010047 Common - hypothetical protein BDI_3466 12 None None None 150008500 Common - hypothetical protein BDI_1886 2 None None None 150009577 Pathogen - hypothetical protein BDI_2990 2 None None None 150008310 Pathogen - hypothetical protein BDI_1679 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150007831 Common - putative secreted sulfatase precursor BDI_1189 87 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150009965 Common - enoyl-[acyl-carrier-protein] reductase BDI_3383 173 COG0623 FabI, Enoyl- acyl-carrier-protein 150008573 Common - ABC transporter permease BDI_1959 5 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150010159 Pathogen - putative transmembrane protein BDI_3582 2 None None None 150008149 Pathogen - hypothetical protein BDI_1515 1 None None None 150008036 Common - putative cell-cycle protein BDI_1399 218 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 150009092 Pathogen - hypothetical protein BDI_2493 3 None None None 150008619 Common - glycosyltransferase family 35, candidate alpha-glucan phosphorylase BDI_2005 150 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 150009173 Common - hypothetical protein BDI_2575 7 None None None 150008781 Common - flavodoxin BDI_2171 35 COG0716 FldA, Flavodoxins Energy production and conversion 150010355 Pathogen - hypothetical protein BDI_3790 2 None None None 150009454 Pathogen - hypothetical protein BDI_2867 2 None None None 150007987 Common - ribulose-phosphate 3-epimerase BDI_1349 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 150009526 Common - putative hemolysin secretion transport system membrane protein BDI_2939 67 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 150007334 Common - conserved hypothetical protein, putative outer membrane efflux protein BDI_0684 85 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007234 Common - carbamoyl phosphate synthase small subunit BDI_0579 233 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 150006952 Pathogen - hypothetical protein BDI_0288 1 None None None 150008742 Pathogen - hypothetical protein BDI_2132 1 None None None 150007213 Common - exopolysaccharide biosynthesis protein BDI_0558 23 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008652 Common - putative general stress protein BDI_2040 23 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 150009047 Common - hypothetical protein BDI_2448 29 None None None 150007185 Common - putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain BDI_0530 201 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 150007297 Common - putative acetyltransferase BDI_0642 13 COG4552 Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases General function prediction only 150009447 Common - putative phosphate/sulphate permease BDI_2855 13 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 150007917 Common - hypothetical protein BDI_1278 37 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 150007018 Common - MATE efflux family protein BDI_0356 188 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150008043 Common - glycosyltransferase family 4 BDI_1406 30 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007344 Common - DNA polymerase III beta chain BDI_0694 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 150008558 Common - fructose-bisphosphate aldolase BDI_1944 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 150007599 Common - BatE, TRP domain containing protein BDI_0952 12 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 150009196 Common - hypothetical protein BDI_2598 5 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 150008965 Common rplO 50S ribosomal protein L15 BDI_2361 215 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 150010042 Common - putative RNA polymerase ECF-type sigma factor BDI_3461 158 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009693 Common - RNA polymerase ECF-type sigma factor BDI_3108 161 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007103 Common - hypothetical protein BDI_0446 7 None None None 150010181 Common - rhomboid family protein BDI_3604 19 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 150009483 Pathogen - hypothetical protein BDI_2896 2 None None None 150010087 Common - hypothetical protein BDI_3507 5 None None None 150009024 Common - putative phosphate transport ATP-binding protein BDI_2420 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 150010056 Common - putative ABC transporter permease BDI_3475 30 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150009492 Pathogen - hypothetical protein BDI_2905 1 None None None 150008933 Common - conserved hypothetical protein, putative lysophospholipase BDI_2329 21 COG2267 PldB, Lysophospholipase Lipid metabolism 150010431 Pathogen - hypothetical protein BDI_3871 2 None None None 150008401 Common - 5,10-methylenetetrahydrofolate reductase BDI_1777 160 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 150008859 Common - aminopeptidase C BDI_2249 14 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 150009712 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3127 5 None None None 150007808 Common - transcriptional regulator BDI_1166 11 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007449 Pathogen - hypothetical protein BDI_0800 1 None None None 150007285 Common - dihydroxyacetone kinase BDI_0630 75 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 150007749 Common - phosphoserine phosphatase BDI_1107 157 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 150007947 Common - UDP-N-acetyl-D-mannosaminuronate dehydrogenase BDI_1308 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 150008023 Common - putative two-component system sensor histidine kinase BDI_1386 219 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 150009147 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2549 9 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009668 Common - NAD-dependent epimerase BDI_3083 186 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150009031 Common - hypothetical protein BDI_2427 6 None None None 150009499 Common - aminopeptidase C BDI_2912 9 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 150007875 Common trmD tRNA (guanine-N(1)-)-methyltransferase BDI_1235 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 150007761 Pathogen - hypothetical protein BDI_1119 1 None None None 150006812 Common - putative transport-related membrane protein BDI_0143 28 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 150007218 Common - putative xylanase/chitin deacetylase BDI_0563 37 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 150009689 Common - glycoside hydrolase family 3, candidate beta-glycosidase BDI_3104 108 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150010378 Pathogen - hypothetical protein BDI_3815 2 None None None 150009414 Common - two-component system sensor histidine kinase BDI_2822 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 150006839 Pathogen - hypothetical protein BDI_0170 1 None None None 150007723 Common - hypothetical protein BDI_1078 19 COG2246 COG2246, Predicted membrane protein Function unknown 150008547 Common - putative lipoprotein BDI_1933 5 None None None 150009363 Common - transcriptional regulator BDI_2771 95 COG1396 HipB, Predicted transcriptional regulators Transcription 150009369 Common - hypothetical protein BDI_2777 14 COG4485 COG4485, Predicted membrane protein Function unknown 150006883 Common - cation-transporting ATPase, P-type, putative zinc-transporting ATPase BDI_0217 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 150007303 Common - putative 6-phosphogluconolactonase BDI_0648 114 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 150007375 Pathogen - hypothetical protein BDI_0726 2 None None None 150007293 Common - putative membrane-associated protein BDI_0638 45 COG2311 COG2311, Predicted membrane protein Function unknown 150010171 Common - two-component system sensor histidine kinase BDI_3594 208 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 150006829 Common - oxaloacetate decarboxylase beta chain BDI_0160 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 150008140 Common - hypothetical protein BDI_1506 3 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 150007196 Common - pyridine nucleotide-disulphide oxidoreductase BDI_0541 244 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 150009216 Pathogen - hypothetical protein BDI_2618 1 None None None 150007598 Common - conserved hypothetical protein BatD BDI_0951 25 None None None 150007605 Common - hypothetical protein BDI_0958 13 None None None 150009719 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3134 6 None None None 150008904 Common - hypothetical protein BDI_2299 3 None None None 150006991 Pathogen - hypothetical protein BDI_0327 2 None None None 150008255 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1624 15 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008762 Common - conserved hypothetical protein, putative ATPase involved in DNA repair BDI_2152 9 None None None 150009326 Common - hypothetical protein BDI_2728 3 None None None 150010033 Common - tryptophanyl-tRNA synthetase BDI_3452 239 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150006932 Common - ATP synthase A subunit BDI_0268 103 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 150008875 Common rplL 50S ribosomal protein L7/L12 BDI_2265 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 150006693 Common - capsular polysaccharide biosynthesis protein, putative BDI_0019 39 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 150009440 Common - signal peptidase I BDI_2848 157 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 150009656 Common - hypothetical protein BDI_3071 39 COG4099 COG4099, Predicted peptidase General function prediction only 150006763 Common - glycoside hydrolase family 36, candidate alpha-glycosidase BDI_0089 44 COG3345 GalA, Alpha-galactosidase Carbohydrate transport and metabolism 150009302 Common - transcriptional regulator BDI_2704 151 COG1522 Lrp, Transcriptional regulators Transcription 150007508 Pathogen - hypothetical protein BDI_0860 2 None None None 150009644 Common - putative tyrosyl-tRNA synthetase 1 BDI_3058 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150007243 Common - indole-3-glycerol phosphate synthase BDI_0588 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 150009099 Common - putative cardiolipin synthetase BDI_2500 149 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 150008746 Pathogen - hypothetical protein BDI_2136 2 None None None 150008352 Common - glycoside hydrolase family 13, candidate 1,4-alpha-glucan branching enzyme BDI_1726 147 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 150007059 Common - putative glycerophosphodiester phosphodiesterase BDI_0402 103 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 150009207 Common - putative arylsulfatase precursor BDI_2609 77 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007138 Pathogen - hypothetical protein BDI_0482 2 None None None 150010214 Common - hypothetical protein BDI_3637 31 COG3882 FkbH, Predicted enzyme involved in methoxymalonyl-ACP biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 150007472 Common - putative permease BDI_0823 81 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 150007032 Common - hypothetical protein BDI_0375 123 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 150007174 Common - CTP synthetase BDI_0519 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 150009798 Common - transcriptional regulator BDI_3214 12 COG3682 COG3682, Predicted transcriptional regulator Transcription 150008850 Pathogen - hypothetical protein BDI_2240 1 None None None 150009565 Common - hypothetical protein BDI_2978 2 None None None 150008205 Common - DNA damage-inducible protein BDI_1571 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 150009847 Common - hypothetical protein BDI_3263 15 None None None 150007498 Pathogen - hypothetical protein BDI_0850 1 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 150008895 Common - putative membrane-associated HD superfamily hydrolase BDI_2290 56 COG1480 COG1480, Predicted membrane-associated HD superfamily hydrolase General function prediction only 150006735 Pathogen - hypothetical protein BDI_0061 1 None None None 150009156 Common - putative chromosome partitioning protein ParB BDI_2558 186 COG1475 Spo0J, Predicted transcriptional regulators Transcription 150010060 Common - two-component system sensor histidine kinase BDI_3479 223 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 150010448 Common - conserved protein found in conjugate transposon BDI_3888 4 None None None 150007206 Common - putative N-acetylmuramoyl-L-alanine amidase BDI_0551 17 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 150008807 Pathogen - hypothetical protein BDI_2197 3 None None None 150008228 Common - putative LPS biosynthesis related glycosyltransferase BDI_1594 177 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150007576 Pathogen - hypothetical protein BDI_0929 2 COG2261 COG2261, Predicted membrane protein Function unknown 150007083 Common - putative EPS related membrane protein BDI_0426 149 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150008786 Common - acetyltransferase BDI_2176 119 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150009007 Common - S-adenosylmethionine synthetase BDI_2403 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 150010139 Common - putative dehydrogenase BDI_3562 162 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008275 Common - putative haloacid dehalogenase-like hydrolase BDI_1644 32 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 150007797 Common - oxidoreductase, Gfo/Idh/MocA family BDI_1155 31 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008359 Common - malic enzyme BDI_1733 217 COG0281 SfcA, Malic enzyme Energy production and conversion 150009864 Pathogen - hypothetical protein BDI_3280 2 None None None 150009883 Common - hypothetical protein BDI_3299 12 None None None 150010496 Common - putative transposase BDI_3937 4 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150009299 Pathogen - hypothetical protein BDI_2701 2 None None None 150009610 Common - putative transmembrane protein BDI_3023 18 COG4299 COG4299, Uncharacterized protein conserved in bacteria Function unknown 150006898 Common - hypothetical protein BDI_0234 39 COG2267 PldB, Lysophospholipase Lipid metabolism 150006685 Common - putative two-component system sensor histidine kinase BDI_0011 17 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 150010114 Common infB translation initiation factor IF-2 BDI_3534 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 150008174 Common - hypothetical protein BDI_1540 42 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007429 Common - K+ uptake protein BDI_0780 84 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 150007978 Common - L-serine dehydratase, iron-sulfur-dependent, single chain form BDI_1340 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 150007639 Pathogen - hypothetical protein BDI_0994 3 None None None 150010177 Common - hypothetical protein BDI_3600 40 COG1814 COG1814, Uncharacterized membrane protein Function unknown 150008122 Common - hypothetical protein BDI_1487 22 None None None 150007832 Common - hypothetical protein BDI_1190 4 None None None 150008705 Common - pyridoxamine 5'-phosphate oxidase BDI_2095 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 150008820 Pathogen - hypothetical protein BDI_2210 1 None None None 150007530 Pathogen - hypothetical protein BDI_0883 1 None None None 150007415 Common - putative transcriptional regulator BDI_0766 85 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007696 Common - cation efflux system protein CzcC BDI_1051 88 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007109 Common - putative tRNA/rRNA methyltransferase BDI_0452 192 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 150007046 Common - malate dehydrogenase BDI_0389 191 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 150010220 Common - putative DNA binding protein BDI_3643 41 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 150009973 Common - formate acetyltransferase BDI_3392 59 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 150008983 Common rplD 50S ribosomal protein L4 BDI_2379 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 150007551 Common - conserved hypothetical protein, putative phage protein BDI_0904 15 None None None 150009707 Common - hypothetical protein BDI_3122 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 150007666 Common - tyrosine type site-specific recombinase BDI_1021 33 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008770 Common - hypothetical protein BDI_2160 8 COG5340 COG5340, Predicted transcriptional regulator Transcription 150007885 Common - serine type site-specific recombinase BDI_1245 95 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 150010157 Pathogen - hypothetical protein BDI_3580 2 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 150006733 Common - hypothetical protein BDI_0059 19 COG2152 COG2152, Predicted glycosylase Carbohydrate transport and metabolism 150007417 Common - hypothetical protein BDI_0768 8 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010105 Common - DNA-binding protein HU-beta BDI_3525 181 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150010193 Common - dTDP-glucose 4,6-dehydratase BDI_3616 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 150009355 Common - TPR-repeat-containing protein BDI_2763 33 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 150010233 Common - conserved hypothetical protein, with a calcineurin-like phosphoesterase domain BDI_3659 91 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 150006755 Common - hypothetical protein BDI_0081 69 COG1285 SapB, Uncharacterized membrane protein Function unknown 150007785 Common - endonuclease III BDI_1143 240 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 150007768 Common - hypothetical protein BDI_1126 6 None None None 150010122 Common - arylsulfatase precursor BDI_3542 94 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150006692 Common - capsular polysaccharide transport protein, putative BDI_0018 162 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150009118 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2519 17 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009502 Common - two-component sensor histidine kinase BDI_2915 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150010316 Common - putative aldose 1-epimerase BDI_3750 98 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 150007657 Pathogen - hypothetical protein BDI_1012 1 None None None 150007721 Common - methylcitrate synthase BDI_1076 192 COG0372 GltA, Citrate synthase Energy production and conversion 150009711 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3126 14 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150006997 Common - 50S ribosomal protein L25/general stress protein Ctc BDI_0333 162 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 150007864 Pathogen - hypothetical protein BDI_1224 1 None None None 150008687 Common - putative outer membrane protein probably involved in nutrient binding BDI_2077 4 None None None 150007652 Pathogen - hypothetical protein BDI_1007 1 None None None 150007585 Pathogen - hypothetical protein BDI_0938 1 None None None 150009942 Common - putative permease BDI_3359 186 COG0628 PerM, Predicted permease General function prediction only 150008912 Common - type I phosphodiesterase/nucleotide pyrophosphatase family protein BDI_2308 34 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 150009189 Common - UDP-2,3-diacylglucosamine hydrolase BDI_2591 66 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 150008337 Common rpsP 30S ribosomal protein S16 BDI_1709 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 150009853 Common - aspartate-semialdehyde dehydrogenase BDI_3269 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 150010396 Common - putative UDP-N-acetylglucosamine 2-epimerase BDI_3833 150 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 150009253 Common - hypothetical protein BDI_2655 9 None None None 150008046 Common - glycosyltransferase family 4 BDI_1409 227 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008396 Common - putative oxidoreductase MocA family BDI_1770 199 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 150008836 Pathogen - putative transcriptional regulator UpxY-like protein BDI_2226 2 None None None 150009408 Common - glycosyltransferase family 4 BDI_2816 196 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007493 Common - hypothetical protein BDI_0844 6 COG2932 COG2932, Predicted transcriptional regulator Transcription 150008721 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase BDI_2111 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 150010461 Common - putative transposase BDI_3901 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150008287 Common - putative large exoprotein involved in heme utilization or adhesion BDI_1656 12 None None None 150009747 Pathogen - hypothetical protein BDI_3162 2 None None None 150009289 Pathogen - hypothetical protein BDI_2691 1 None None None 150009267 Common - hypothetical protein BDI_2669 7 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 150007848 Common - glycoside hydrolase family 3, candidate beta-glycosidase BDI_1208 94 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150007703 Common - putative phosphoesterase BDI_1058 33 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 150009437 Pathogen - hypothetical protein BDI_2845 1 None None None 150007740 Common - Xaa-Pro aminopeptidase BDI_1098 121 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 150008163 Common - putative hydrolase BDI_1529 79 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 150007254 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0599 68 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150009586 Common - putative translaldolase BDI_2999 160 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 150010404 Common - transcriptional regulator BDI_3841 120 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 150008920 Common - putative outer membrane protein probably involved in nutrient binding BDI_2316 10 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150007671 Common - hypothetical protein BDI_1026 34 COG4828 COG4828, Predicted membrane protein Function unknown 150009763 Common - putative secreted protein BDI_3178 7 None None None 150007753 Common - exodeoxyribonuclease BDI_1111 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 150007781 Common - putative O-succinylbenzoate--CoA ligase BDI_1139 151 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150007436 Common - pyruvate-formate lyase-activating enzyme BDI_0787 99 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 150009042 Common - two-component sensor histidine kinase BDI_2438 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008717 Common - hypothetical protein BDI_2107 4 None None None 150007422 Common - hypothetical protein BDI_0773 73 COG0795 COG0795, Predicted permeases General function prediction only 150010198 Common - putative flippase, involved in lipopolysaccharide biosynthesis BDI_3621 48 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008159 Common - putative nitroreductase BDI_1525 64 COG0778 NfnB, Nitroreductase Energy production and conversion 150008221 Common - conserved hypothetical protein, putative nucleotidyltransferase BDI_1587 36 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 150008058 Common - integrase BDI_1421 129 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007155 Common - putative outer membrane protein probably involved in nutrient binding BDI_0500 50 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150007997 Common - integrase BDI_1359 137 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150006807 Common - hypothetical protein BDI_0138 6 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 150008001 Common - putative ThiJ family intracellular protease BDI_1363 79 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 150009801 Pathogen - hypothetical protein BDI_3217 2 None None None 150009260 Common - potassium uptake protein TrkH BDI_2662 142 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 150009226 Pathogen - hypothetical protein BDI_2628 1 None None None 150008290 Common - putative transcriptional regulator BDI_1659 149 COG1733 COG1733, Predicted transcriptional regulators Transcription 150009546 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein BDI_2959 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 150007143 Common - putative acetylglutamate kinase BDI_0488 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 150007312 Common - acetyl-CoA carboxylase, carboxyltransferase component BDI_0657 216 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 150008015 Common - putative aminotransferase BDI_1378 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 150007354 Common - AcrB/D/F family transporter BDI_0705 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150009069 Common - putative anti-sigma factor BDI_2470 40 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007906 Common - site-specific recombinase BDI_1266 9 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008108 Common - tyrosine-protein kinase BDI_1472 55 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 150009868 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3284 6 None None None 150008381 Common - asparaginase family protein BDI_1755 84 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 150007011 Common - ABC transporter, permease protein, putative BDI_0348 12 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150006786 Common - hypothetical protein BDI_0112 9 None None None 150009949 Common - dihydropteroate synthase BDI_3367 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 150010397 Common - putative lipopolysaccharide biosynthesis protein BDI_3834 8 None None None 150009053 Common - hypothetical protein BDI_2454 10 None None None 150006942 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0278 10 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150010390 Common - hypothetical protein BDI_3827 3 None None None 150010205 Common - putative acetyltransferase BDI_3628 189 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150008264 Common - putative transporter permease protein BDI_1633 14 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150008113 Common - acetyltransferase BDI_1477 84 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150009296 Common - peptidase, M23/M37 family BDI_2698 193 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 150008592 Common - thioredoxin BDI_1978 224 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 150008951 Common - hypothetical protein BDI_2347 6 None None None 150007489 Common - aspartate carbamoyltransferase regulatory subunit BDI_0840 64 COG1781 PyrI, Aspartate carbamoyltransferase, regulatory subunit Nucleotide transport and metabolism 150009806 Pathogen - hypothetical protein BDI_3222 2 None None None 150007115 Common - putative macrolide efflux pump BDI_0459 149 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 150007133 Common - UDP-N-acetylglucosamine 1-carboxyvinyltransferase BDI_0477 209 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 150010338 Common hppA membrane-bound proton-translocating pyrophosphatase BDI_3772 98 COG3808 OVP1, Inorganic pyrophosphatase Energy production and conversion 150007521 Pathogen - hypothetical protein BDI_0873 1 None None None 150006975 Common - peptidase T BDI_0311 61 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 150008632 Common - putative ATP-binding protein involved in cell division BDI_2020 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 150010234 Common - putative two-component system response regulator BDI_3660 211 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009276 Pathogen - hypothetical protein BDI_2678 2 None None None 150008890 Common - putative beta-lactamase BDI_2285 92 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 150008968 Common rplR 50S ribosomal protein L18 BDI_2364 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 150009434 Pathogen - hypothetical protein BDI_2842 1 None None None 150008776 Common - hypothetical protein BDI_2166 15 COG5545 COG5545, Predicted P-loop ATPase and inactivated derivatives General function prediction only 150009914 Common - putative membrane fusion protein precursor BDI_3331 175 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007410 Common - folylpolyglutamate synthase BDI_0761 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 150009814 Common - putative O-antigen polymerase BDI_3230 4 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 150009134 Common - hypothetical protein BDI_2535 10 None None None 150009657 Pathogen - hypothetical protein BDI_3072 2 None None None 150008206 Common - hypothetical protein BDI_1572 9 None None None 150008348 Common - pyridoxal kinase, putative BDI_1722 70 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 150007122 Common - hypothetical protein BDI_0466 10 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 150009818 Common - glycosyltransferase family 8 BDI_3234 33 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 150008571 Common - ABC transporter permease BDI_1957 16 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150009771 Common - putative gluconate kinase BDI_3186 105 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150009874 Common - transcriptional regulator BDI_3290 118 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150009569 Common - hypothetical protein BDI_2982 50 COG2361 COG2361, Uncharacterized conserved protein Function unknown 150006702 Common - conserved hypothetical protein, putative glycosyltransferase BDI_0028 16 None None None 150007306 Common - GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase BDI_0651 177 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150010066 Pathogen - hypothetical protein BDI_3485 1 None None None 150009233 Common surE stationary phase survival protein SurE BDI_2635 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 150007160 Common - phosphoserine aminotransferase BDI_0505 140 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 150009470 Common - hypothetical protein BDI_2883 2 None None None 150009417 Common - erythronate-4-phosphate dehydrogenase BDI_2825 230 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 150007085 Common - putative UDP-galactose phosphate transferase involved in lipopolysaccharide synthesis BDI_0428 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150009842 Common - hypothetical protein BDI_3258 4 None None None 150007224 Common - hypothetical protein BDI_0569 209 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 150008392 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1766 13 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009934 Common - chromate transport protein BDI_3351 115 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 150007758 Common - AMP nucleosidase BDI_1116 86 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 150007678 Pathogen - hypothetical protein BDI_1033 1 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150007002 Common - outer membrane efflux protein BDI_0338 122 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150009412 Common - hypothetical protein BDI_2820 12 None None None 150008970 Common rpsH 30S ribosomal protein S8 BDI_2366 249 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 150006742 Common argC N-acetyl-gamma-glutamyl-phosphate reductase BDI_0068 215 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 150009460 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2873 43 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009691 Pathogen - hypothetical protein BDI_3106 1 None None None 150010464 Common - DNA primase BDI_3904 4 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 150008919 Common - putative outer membrane protein probably involved in nutrient binding BDI_2315 6 None None None 150010244 Common - hypothetical protein BDI_3670 6 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150006842 Common - hypothetical protein BDI_0173 64 COG1971 COG1971, Predicted membrane protein Function unknown 150009021 Common - acetyl-CoA hydrolase/transferase family protein BDI_2417 97 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 150009240 Common - RNA polymerase ECF-type sigma factor BDI_2642 152 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009513 Pathogen - hypothetical protein BDI_2926 2 None None None 150008495 Common - penicillin-binding protein 2 BDI_1881 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 150009925 Common - putative two-component system response regulator BDI_3342 222 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150010388 Common - hypothetical protein BDI_3825 2 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 150009209 Common - hypothetical protein BDI_2611 28 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 150009862 Pathogen - hypothetical protein BDI_3278 2 None None None 150008139 Common - L-threonine aldolase BDI_1505 107 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 150010094 Pathogen - putative fimbrial protein precursor BDI_3514 1 None None None 150009612 Pathogen - hypothetical protein BDI_3025 2 None None None 150010312 Common - hypothetical protein BDI_3746 8 None None None 150008131 Common - 3-oxoacyl-[acyl-carrier protein] reductase BDI_1496 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150009505 Pathogen - hypothetical protein BDI_2918 2 None None None 150008522 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1908 6 None None None 150007403 Common - hypothetical protein BDI_0754 3 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 150007538 Pathogen - hypothetical protein BDI_0891 1 None None None 150008299 Common - transketolase BDI_1668 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 150009906 Common - hypothetical protein BDI_3323 6 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 150010088 Common - putative cytochrome c biogenesis protein BDI_3508 9 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 150008979 Common rplV 50S ribosomal protein L22 BDI_2375 214 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 150008942 Common - glycoside hydrolase family 3, candidate beta-glycosidase BDI_2338 198 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150009109 Common - peptide chain release factor 3 BDI_2510 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 150010297 Common - hypothetical protein BDI_3730 5 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 150008958 Common - DNA-directed RNA polymerase subunit alpha BDI_2354 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 150009386 Pathogen - hypothetical protein BDI_2794 1 None None None 150006867 Common - TPR domain protein BDI_0201 10 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 150008949 Common - two-component system response regulator BDI_2345 108 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150006849 Common - TPR domain protein BDI_0181 7 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 150008551 Common - putative transport protein BDI_1937 58 COG2985 COG2985, Predicted permease General function prediction only 150007091 Common - putative hexapeptide transferase family protein BDI_0434 10 None None None 150008562 Common - two-component system sensor histidine kinase BDI_1948 209 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 150008700 Pathogen - hypothetical protein BDI_2090 2 None None None 150009672 Common - putative lipoprotein BDI_3087 26 None None None 150007543 Pathogen - hypothetical protein BDI_0896 1 None None None 150007025 Common - xylanase BDI_0368 59 COG0657 Aes, Esterase/lipase Lipid metabolism 150006853 Common - hypothetical protein BDI_0185 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 150007167 Common - SoxR-reducing system protein RsxE BDI_0512 76 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 150010441 Pathogen - glycoside hydrolase family 24 BDI_3881 4 COG3772 COG3772, Phage-related lysozyme (muraminidase) General function prediction only 150009270 Common - arginase BDI_2672 149 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 150010320 Pathogen - hypothetical protein BDI_3754 1 None None None 150009100 Common - putative methyltransferase BDI_2501 208 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 150007980 Common - hypothetical protein BDI_1342 18 COG4299 COG4299, Uncharacterized protein conserved in bacteria Function unknown 150007092 Common - capsule biosynthesis protein BDI_0435 35 COG2843 PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Cell envelope biogenesis, outer membrane 150009125 Pathogen - hypothetical protein BDI_2526 1 None None None 150009940 Common - two-component system response regulator BDI_3357 161 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150010319 Pathogen - hypothetical protein BDI_3753 1 None None None 150008760 Pathogen - hypothetical protein BDI_2150 1 None None None 150009533 Common - glycoside hydrolase family 33, candidate sialidase BDI_2946 19 COG4409 NanH, Neuraminidase (sialidase) Carbohydrate transport and metabolism 150010329 Common - hypothetical protein BDI_3763 33 COG4185 COG4185, Uncharacterized protein conserved in bacteria Function unknown 150008596 Common - hypothetical protein BDI_1982 12 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008146 Pathogen - hypothetical protein BDI_1512 2 None None None 150009953 Common - uridylate kinase BDI_3371 239 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 150007462 Common - hypothetical protein BDI_0813 28 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 150010425 Pathogen - hypothetical protein BDI_3865 1 None None None 150007540 Common - conserved hypothetical protein, putative viral A-type inclusion protein BDI_0893 58 COG3941 COG3941, Mu-like prophage protein General function prediction only 150006728 Common - putative NADH dehydrogenase BDI_0054 167 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 150008533 Common - hypothetical protein BDI_1919 34 COG3339 COG3339, Uncharacterized conserved protein Function unknown 150009344 Pathogen - hypothetical protein BDI_2751 1 None None None 150007363 Common - putative methyltransferase BDI_0714 79 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 150008104 Common - hypothetical protein BDI_1468 2 None None None 150009163 Common - hypothetical protein BDI_2565 80 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 150008329 Pathogen - hypothetical protein BDI_1698 1 COG4907 COG4907, Predicted membrane protein Function unknown 150009190 Common - phosphate ABC transporter, phosphate-binding protein BDI_2592 149 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 150010140 Common - sugar phosphate isomerase/epimerase BDI_3563 59 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150007562 Common - cation-transporting ATPase BDI_0915 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 150007127 Pathogen - hypothetical protein BDI_0471 1 None None None 150009420 Common - ribonuclease III BDI_2828 215 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 150006871 Common - carboxy-terminal processing protease precursor BDI_0205 184 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150008621 Common - putative xylanase BDI_2007 66 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 150008937 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2333 6 None None None 150008368 Common fmt methionyl-tRNA formyltransferase BDI_1742 223 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 150007800 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1158 13 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150006715 Common - hypothetical protein BDI_0041 11 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 150009704 Pathogen - hypothetical protein BDI_3119 1 None None None 150008485 Common - hypothetical protein BDI_1871 5 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 150007892 Common - aminotransferase BDI_1252 233 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 150008584 Common - hypothetical protein BDI_1970 37 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150009081 Common - hypothetical protein BDI_2482 152 COG1610 COG1610, Uncharacterized conserved protein Function unknown 150006739 Pathogen - hypothetical protein BDI_0065 2 None None None 150007015 Common - riboflavin synthase subunit alpha BDI_0352 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 150007251 Common - phosphoglycerate mutase BDI_0596 158 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 150008118 Common - putative fructokinase BDI_1483 104 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150009732 Pathogen - hypothetical protein BDI_3147 3 None None None 150010185 Common - bifunctional preprotein translocase subunit SecD/SecF BDI_3608 221 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 150007496 Pathogen - hypothetical protein BDI_0847 2 None None None 150009168 Common - phosphatidylserine decarboxylase BDI_2570 93 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 150007265 Common - putative Na+/H+ antiporter BDI_0610 76 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 150009980 Common - TonB-dependent outer membrane receptor BDI_3399 116 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150009600 Common - TonB-dependent receptor, putative BDI_3013 17 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008633 Common - aspartokinase BDI_2021 233 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 150007775 Common - haloacid dehalogenase-like hydrolase BDI_1133 142 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 150009593 Common - hypothetical protein BDI_3006 16 None None None 150008793 Common - glycoside hydrolase family 92 BDI_2183 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150009989 Common - putative iron transport-related exported protein BDI_3408 124 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150008694 Common - hypothetical protein BDI_2084 166 COG1576 COG1576, Uncharacterized conserved protein Function unknown 150007258 Common - hypothetical protein BDI_0603 5 None None None 150008961 Common rpsM 30S ribosomal protein S13 BDI_2357 244 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 150008504 Common - putative sulfatase BDI_1890 75 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 150006914 Common - hypothetical protein BDI_0250 50 COG4804 COG4804, Uncharacterized conserved protein Function unknown 150010345 Common - putative dipeptidyl-peptidase III BDI_3779 13 None None None 150007399 Common - transposase BDI_0750 16 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007066 Pathogen - hypothetical protein BDI_0409 1 None None None 150007470 Common - glutamate decarboxylase BDI_0821 66 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 150006907 Common - hypothetical protein BDI_0243 6 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150007230 Common - glycosyltransferase family 4 BDI_0575 112 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008899 Pathogen - hypothetical protein BDI_2294 1 None None None 150007745 Common - transcriptional regulator BDI_1103 68 COG1725 COG1725, Predicted transcriptional regulators Transcription 150008335 Common - hypothetical protein BDI_1707 13 None None None 150009609 Common - hypothetical protein BDI_3022 17 None None None 150007050 Common - hypothetical protein BDI_0393 14 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 150006816 Pathogen - hypothetical protein BDI_0147 1 None None None 150007098 Common - uridine diphosphate glucose dehydrogenase BDI_0441 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 150009986 Common - hypothetical protein BDI_3405 49 COG2966 COG2966, Uncharacterized conserved protein Function unknown 150007794 Common - two-component system sensor histidine kinase BDI_1152 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009522 Common - ABC transporter ATP-binding protein BDI_2935 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 150010512 Common - cobalamin biosynthesis protein CbiB BDI_3959 148 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 150008216 Common - glycosyltransferase family 4 BDI_1582 212 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007392 Common - hypothetical protein BDI_0743 10 COG3943 COG3943, Virulence protein General function prediction only 150010076 Pathogen - putative lipoprotein BDI_3496 3 None None None 150007239 Common - hypothetical protein BDI_0584 19 COG1556 COG1556, Uncharacterized conserved protein Function unknown 150009487 Common - putative sugar isomerase BDI_2900 145 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 150008193 Common - putative outer membrane protein probably involved in nutrient binding BDI_1559 6 None None None 150007820 Common - putative helicase BDI_1178 71 COG1203 COG1203, Predicted helicases General function prediction only 150009370 Common - glycosyltransferase family 2 BDI_2778 161 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150010226 Common - hypothetical protein BDI_3649 20 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 150009203 Pathogen - hypothetical protein BDI_2605 2 None None None 150007389 Common - putative transposase BDI_0740 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150007646 Pathogen - hypothetical protein BDI_1001 1 None None None 150009967 Common - hypothetical protein BDI_3385 15 None None None 150008870 Common - conserved hypothetical protein, putative transcriptional accessory protein BDI_2260 11 None None None 150009755 Common - hypothetical protein BDI_3170 5 None None None 150008900 Pathogen - hypothetical protein BDI_2295 1 None None None 150007601 Pathogen - hypothetical protein BDI_0954 3 None None None 150009836 Common - putative DNA-methyltransferase BDI_3252 118 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 150007653 Pathogen - hypothetical protein BDI_1008 1 None None None 150007900 Pathogen - hypothetical protein BDI_1260 1 None None None 150010212 Common - probable serine O-acetyltransferase BDI_3635 55 COG1043 LpxA, Acyl- acyl carrier protein 150009650 Common - glycoside hydrolase family 43, candidate beta-glycosidase; central CBM32 module BDI_3065 11 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 150008276 Common - spermidine/putrescine ABC transporter BDI_1645 128 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 150008614 Common - beta-lactamase induction signal transducer BDI_2000 103 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 150008379 Common - NAD-utilizing dehydrogenase BDI_1753 80 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 150008734 Common - integrase BDI_2124 152 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007739 Common - hypothetical protein BDI_1097 8 COG3510 CmcI, Cephalosporin hydroxylase Defense mechanisms 150008885 Common - translation initiation factor IF-2B subunit alpha BDI_2280 132 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 150008340 Common - putative permease BDI_1714 5 None None None 150007325 Common pgk phosphoglycerate kinase BDI_0672 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 150007625 Common - putative transcriptional regulator BDI_0978 22 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007555 Pathogen - hypothetical protein BDI_0908 2 None None None 150008992 Pathogen - hypothetical protein BDI_2388 3 None None None 150010456 Pathogen - hypothetical protein BDI_3896 1 None None None 150009019 Common - conserved hypothetical protein, putative tRNA-i(6)A37 modification enzyme MiaB BDI_2415 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 150007962 Common - rhamnulose kinase/L-fuculose kinase BDI_1323 71 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 150009947 Common - hypothetical protein BDI_3365 31 COG5373 COG5373, Predicted membrane protein Function unknown 150008454 Common - UDP-bacillosamine synthetase BDI_1838 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150010048 Pathogen - hypothetical protein BDI_3467 1 None None None 150008907 Common - methylmalonyl-CoA mutase BDI_2302 109 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 150007580 Pathogen - hypothetical protein BDI_0933 3 None None None 150008235 Common - peptidyl-dipeptidase BDI_1601 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 150007686 Common - serine acetyltransferase BDI_1041 188 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 150010286 Common - hypothetical protein BDI_3715 15 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 150007289 Common - hypothetical protein BDI_0634 32 COG2152 COG2152, Predicted glycosylase Carbohydrate transport and metabolism 150008095 Common - putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase BDI_1459 8 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 150009880 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_3296 69 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150010436 Common - hypothetical protein BDI_3876 3 None None None 150010252 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3678 5 None None None 150008753 Pathogen - hypothetical protein BDI_2143 1 None None None 150008544 Common - two-component system response regulator BDI_1930 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150007183 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase BDI_0528 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 150008256 Common - hypothetical protein BDI_1625 18 None None None 150008430 Common - stable NiFe hydrogenase large subunit BDI_1812 104 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 150008490 Common - hypothetical protein BDI_1876 119 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 150010010 Common - hypothetical protein BDI_3429 4 None None None 150007301 Common - 6-phosphogluconate dehydrogenase BDI_0646 172 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 150008284 Pathogen - hypothetical protein BDI_1653 2 None None None 150006833 Common - lactoylglutathione lyase and related protein BDI_0164 94 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 150008303 Common - hypothetical protein BDI_1672 25 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 150009335 Common - carboxylesterase type B BDI_2742 63 COG2272 PnbA, Carboxylesterase type B Lipid metabolism 150006766 Common - hypothetical protein BDI_0092 12 None None None 150010002 Common - hypothetical protein BDI_3421 100 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 150008021 Common - putative transport protein BDI_1384 206 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150007730 Common - purine nucleoside phosphorylase BDI_1085 113 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 150009218 Pathogen - hypothetical protein BDI_2620 2 None None None 150008671 Common - 2-isopropylmalate synthase LeuA BDI_2061 206 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 150008514 Common - putative sugar kinase BDI_1900 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 150010274 Common - hypothetical protein BDI_3703 42 COG3304 COG3304, Predicted membrane protein Function unknown 150010305 Common - cytidylate kinase BDI_3739 205 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 150010363 Pathogen - hypothetical protein BDI_3798 2 None None None 150007716 Common - putative transport protein BDI_1071 58 COG2985 COG2985, Predicted permease General function prediction only 150007057 Common - hypothetical protein BDI_0400 8 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 150010481 Common - glycerophosphoryl diester phosphodiesterase BDI_3922 103 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 150007387 Common - DNA primase TraC BDI_0738 23 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 150008480 Common - putative pyruvate formate-lyase 3 activating enzyme BDI_1866 79 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 150009365 Common - putative transcriptional regulator BDI_2773 117 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007065 Pathogen - RNA polymerase ECF-type sigma factor BDI_0408 2 None None None 150008253 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1622 6 None None None 150008987 Common - 30S ribosomal protein S7 BDI_2383 228 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 150007194 Common - seryl-tRNA synthetase BDI_0539 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 150007881 Common - molecular chaperon GrpE protein BDI_1241 229 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 150008560 Common - hypothetical protein BDI_1946 18 None None None 150007750 Common - hypothetical protein BDI_1108 21 None None None 150008067 Common - putative transcriptional regulator BDI_1431 131 COG1678 COG1678, Putative transcriptional regulator Transcription 150010113 Common nusA transcription elongation factor NusA BDI_3533 225 COG0195 NusA, Transcription elongation factor Transcription 150007419 Common - PhoH-like protein BDI_0770 192 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 150007910 Common glyA serine hydroxymethyltransferase BDI_1271 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 150010173 Common - two-componnent system response regulator BDI_3596 220 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 150006958 Common - hypothetical protein BDI_0294 3 None None None 150007690 Common - NADH:ubiquinone oxidoreductase subunit BDI_1045 157 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 150010438 Pathogen - hypothetical protein BDI_3878 2 None None None 150007883 Common - DNA mismatch repair protein MutS BDI_1243 204 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 150009717 Common - putative anti-sigma factor BDI_3132 42 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150010347 Common - transcriptional regulator BDI_3781 89 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 150007491 Pathogen - hypothetical protein BDI_0842 1 None None None 150010035 Pathogen - hypothetical protein BDI_3454 3 None None None 150008449 Common - dTDP-4-dehydrorhamnose 3,5-epimerase BDI_1833 170 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 150008590 Common - glycoside hydrolase family 2, candidate beta-galactosidase BDI_1976 73 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150007611 Common - hypothetical protein BDI_0964 3 None None None 150008126 Common - outer membrane protein oprM precursor BDI_1491 124 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007888 Common - transcriptional regulator BDI_1248 122 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150009323 Common - putative two-component regulator sensor kinase BDI_2725 99 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150006950 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase BDI_0286 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 150008354 Common - putative NADH dehydrogenase/NAD(P)H nitroreductase BDI_1728 117 COG0778 NfnB, Nitroreductase Energy production and conversion 150007510 Common - methyltransferase BDI_0862 59 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 150006773 Pathogen - hypothetical protein BDI_0099 2 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150006981 Common - hypothetical protein BDI_0317 47 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 150008938 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2334 25 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150006896 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0232 39 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009654 Common - glycoside hydrolase family 43, candidate beta-glycosidase BDI_3069 10 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 150008325 Common - competence protein BDI_1694 175 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 150007176 Pathogen - hypothetical protein BDI_0521 2 None None None 150008033 Common - putative two-component system sensor histidine kinase BDI_1396 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009097 Common - hypothetical protein BDI_2498 3 None None None 150007506 Common - hypothetical protein BDI_0858 124 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 150008617 Pathogen - hypothetical protein BDI_2003 3 COG5136 COG5136, U1 snRNP-specific protein C RNA processing and modification 150007209 Common - hypothetical protein BDI_0554 3 None None None 150007043 Pathogen - integrase BDI_0386 1 None None None 150006709 Pathogen - hypothetical protein BDI_0035 1 None None None 150007273 Common - non-specific DNA-binding protein Dps BDI_0618 119 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 150009850 Common - tryptophan synthase subunit beta BDI_3266 225 COG1350 COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) General function prediction only 150009567 Common - adenine-specific DNA methylase BDI_2980 135 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 150008305 Common - mucin-desulfating sulfatase BDI_1674 86 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007839 Common - hypothetical protein BDI_1197 3 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 150009785 Common - glycyl-tRNA synthetase BDI_3201 86 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 150007829 Common - hypothetical protein BDI_1187 21 COG3893 COG3893, Inactivated superfamily I helicase DNA replication, recombination, and repair 150008893 Common - glycosyltransferase family 30 BDI_2288 127 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 150009291 Common folE GTP cyclohydrolase I BDI_2693 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 150008512 Common adk adenylate kinase BDI_1898 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 150009825 Common - polysaccharide export protein, BexD/CtrA/VexA family BDI_3241 79 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150007919 Common - glycosyltransferase family 2 BDI_1280 42 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009670 Common - hypothetical protein BDI_3085 20 None None None 150007283 Pathogen - hypothetical protein BDI_0628 2 None None None 150010200 Pathogen - hypothetical protein BDI_3623 1 None None None 150008967 Common rpsE 30S ribosomal protein S5 BDI_2363 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 150006820 Pathogen - hypothetical protein BDI_0151 2 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150010353 Common groEL chaperonin GroEL BDI_3787 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 150007295 Pathogen - hypothetical protein BDI_0640 1 None None None 150009456 Common - hypothetical protein BDI_2869 10 None None None 150007105 Common ileS isoleucyl-tRNA synthetase BDI_0448 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150008041 Common - hypothetical protein BDI_1404 31 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 150008443 Common - nucleoside transporter BDI_1825 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 150009089 Common - phospho-N-acetylmuramoyl-pentapeptide-transferase BDI_2490 224 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150009049 Common - hypothetical protein BDI_2450 13 None None None 150009744 Common - glycosyltransferase family 32 BDI_3159 12 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 150008079 Common - TonB-dependent outer membrane receptor BDI_1443 118 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150010326 Common - hypothetical protein BDI_3760 7 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 150007336 Common - flavodoxin FldA BDI_0686 68 COG0716 FldA, Flavodoxins Energy production and conversion 150008931 Common - hypothetical protein BDI_2327 21 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 150009380 Common - putative lipopolysaccharide biosynthesis protein BDI_2788 110 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008090 Common - hypothetical protein BDI_1454 13 None None None 150007447 Pathogen - hypothetical protein BDI_0798 2 None None None 150006717 Common - putative UDP-GlcNAc 2-epimerase BDI_0043 153 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 150008845 Common - hypothetical protein BDI_2235 4 None None None 150009145 Common - putative Na+/Ca2+ exchanger protein BDI_2547 126 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 150007630 Common - glycoside hydrolase family 2, candidate beta-galactosidase BDI_0983 74 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150009026 Common - hypothetical protein BDI_2422 4 None None None 150007949 Common - transporter, AcrB/D/F family BDI_1310 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150008400 Common - conserved hypothetical protein, putative Superfamily I DNA helicase BDI_1776 40 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 150009604 Common - hypothetical protein BDI_3017 19 None None None 150008383 Common - arginase BDI_1757 48 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 150010058 Pathogen - hypothetical protein BDI_3477 1 None None None 150006814 Common - sugar phosphate isomerase/epimerase BDI_0145 34 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150008667 Common - putative transport protein BDI_2057 199 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 150008407 Pathogen - hypothetical protein BDI_1783 2 None None None 150009078 Common - two-component system sensor histidine kinase BDI_2479 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008788 Pathogen - hypothetical protein BDI_2178 2 None None None 150007075 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0418 8 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150010501 Common - protease IV BDI_3943 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 150007086 Common - putative acetyltransferase, GNAT family BDI_0429 48 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150009090 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase BDI_2491 212 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 150008464 Common - DNA primase BDI_1848 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 150007592 Common - magnesium chelatase subunit I BDI_0945 182 COG0714 COG0714, MoxR-like ATPases General function prediction only 150008691 Common - peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type BDI_2081 125 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 150010228 Common trmB tRNA (guanine-N(7))-methyltransferase BDI_3651 119 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 150007380 Common - chromosome-partitioning ATPase BDI_0731 230 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150006699 Common - putative UDP-ManNAc dehydrogenase BDI_0025 207 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 150009776 Common - collagenase precursor BDI_3191 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 150009584 Pathogen - hypothetical protein BDI_2997 2 None None None 150009866 Common - putative secreted protein BDI_3282 38 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 150008910 Pathogen - hypothetical protein BDI_2306 2 None None None 150007705 Common - putative thiamine-phosphate pyrophosphorylase BDI_1060 182 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 150007603 Pathogen - hypothetical protein BDI_0956 1 None None None 150010399 Common - UDP-galactose phosphate transferase BDI_3836 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150010389 Pathogen - hypothetical protein BDI_3826 1 None None None 150008003 Common - phenylacetate-coenzyme A ligase BDI_1366 122 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 150008243 Common - putative thiazole biosynthetic enzyme BDI_1609 35 COG1635 THI4, Flavoprotein involved in thiazole biosynthesis Coenzyme metabolism 150007811 Pathogen - hypothetical protein BDI_1169 1 None None None 150008601 Common - phosphoribosylaminoimidazole-succinocarboxamide synthase BDI_1987 162 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 150010402 Common - UDP-glucose 4-epimerase BDI_3839 115 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150009439 Common - dihydrodipicolinate reductase BDI_2847 214 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 150009998 Common - putative vitamin B12 receptor BDI_3417 72 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150010523 Common - conserved hypothetical protein, putative N-acetylmuramoyl-L-alanine amidase amiA BDI_3970 176 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 150008168 Common - conserved hypothetical protein, putative membrane protein BDI_1534 94 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 150008719 Pathogen - hypothetical protein BDI_2109 1 None None None 150008467 Common - hypothetical protein BDI_1853 193 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 150007356 Common - thymidine kinase BDI_0707 59 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 150007004 Common - transcriptional regulator BDI_0340 62 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007846 Pathogen - hypothetical protein BDI_1206 2 None None None 150007358 Common - putative translation initiation inhibitor, putative endoribonuclease L-PSP, putative BDI_0709 191 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 150007268 Pathogen - hypothetical protein BDI_0613 1 None None None 150010409 Common - RNA polymerase ECF-type sigma factor BDI_3847 112 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009442 Common - hypothetical protein BDI_2850 16 None None None 150006775 Common - small heat shock protein BDI_0101 110 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 150009493 Common - ATP-dependent RNA helicase BDI_2906 232 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 150009570 Common - conserved hypothetical protein, putative nucleotidyltransferase BDI_2983 26 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 150010178 Common argS arginyl-tRNA synthetase BDI_3601 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150009816 Common - glycosyltransferase family 2 BDI_3232 135 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009579 Pathogen - hypothetical protein BDI_2992 2 None None None 150010242 Common - putative TonB-dependent receptor BDI_3668 9 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009449 Pathogen - hypothetical protein BDI_2862 1 None None None 150008390 Pathogen - hypothetical protein BDI_1764 1 None None None 150010162 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3585 14 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150007427 Common - hypothetical protein BDI_0778 43 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 150008017 Common - chorismate mutase/prephenate dehydratase BDI_1380 19 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 150007999 Common - putative NADH-dependent dyhydrogenase BDI_1361 50 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150010191 Pathogen - hypothetical protein BDI_3614 1 None None None 150006930 Common - ATP synthase B subunit BDI_0266 19 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 150007984 Pathogen - hypothetical protein BDI_1346 1 None None None 150008297 Common - galactokinase BDI_1666 106 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 150009282 Common - oxaloacetate decarboxylase beta chain BDI_2684 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 150007699 Common - two-component system response regulator BDI_1054 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009050 Common - hypothetical protein BDI_2451 35 COG3500 COG3500, Phage protein D General function prediction only 150006788 Common - two-component system response regulator BDI_0114 222 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150009544 Common - hypothetical protein BDI_2957 22 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 150008829 Common - putative UDP-glucose-6 dehydrogenase BDI_2219 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 150010508 Common - cobalamin 5'-phosphate synthase BDI_3955 69 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 150007517 Pathogen - hypothetical protein BDI_0869 2 None None None 150008650 Common - putative peptide methionine sulfoxide reductase BDI_2038 206 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 150009927 Common - ribonuclease R BDI_3344 192 COG0557 VacB, Exoribonuclease R Transcription 150007145 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0490 83 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150008834 Common - polysaccharide export protein, BexD/CtrA/VexA family BDI_2224 77 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150008269 Pathogen - hypothetical protein BDI_1638 1 None None None 150009000 Common - ATP-dependent Clp protease, proteolytic subunit BDI_2396 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 150009036 Pathogen - putative hemagglutinin-related protein BDI_2432 3 None None None 150009288 Common - hypothetical protein BDI_2690 18 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009665 Common - putative secreted tripeptidyl aminopeptidase BDI_3080 7 None None None 150006988 Common asnB asparagine synthetase B BDI_0324 161 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 150008129 Pathogen - hypothetical protein BDI_1494 1 None None None 150009111 Pathogen - hypothetical protein BDI_2512 3 None None None 150007157 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0502 42 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008203 Common - peptidyl-prolyl cis-trans isomerase, cyclophilin-type BDI_1569 192 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 150009402 Common - hypothetical protein BDI_2810 3 None None None 150007791 Pathogen - hypothetical protein BDI_1149 2 None None None 150009881 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3297 13 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150006749 Common - propionyl-CoA carboxylase beta chain BDI_0075 214 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 150009920 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3337 5 None None None 150008152 Common - glycoside hydrolase family 35, candidate beta-glycosidase BDI_1518 56 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 150008809 Common - hypothetical protein BDI_2199 4 None None None 150007862 Common - two-component system sensor histidine kinase BDI_1222 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150010254 Common - conserved hypothetical protein, putative chaperonin BDI_3680 24 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 150010488 Pathogen - hypothetical protein BDI_3929 1 None None None 150009102 Common - hypothetical protein BDI_2503 4 None None None 150008926 Common - conserved hypothetical protein, probably involved in nutrient binding BDI_2322 6 None None None 150006861 Common - hypothetical protein BDI_0193 8 None None None 150007016 Common - putative chaperone DnAJ BDI_0353 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 150009997 Pathogen - hypothetical protein BDI_3416 1 None None None 150007481 Common - hypothetical protein BDI_0832 22 COG3682 COG3682, Predicted transcriptional regulator Transcription 150008240 Common - cation efflux system protein BDI_1606 150 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150009808 Pathogen - hypothetical protein BDI_3224 1 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150008273 Pathogen - hypothetical protein BDI_1642 2 None None None 150008594 Common - hypothetical protein BDI_1980 30 COG1846 MarR, Transcriptional regulators Transcription 150007319 Common - RNA binding protein BDI_0664 65 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 150008412 Common - putative lipase BDI_1788 103 COG0657 Aes, Esterase/lipase Lipid metabolism 150008624 Pathogen - hypothetical protein BDI_2010 3 None None None 150008868 Common - two-component system sensor histidine kinase BDI_2258 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007806 Pathogen - hypothetical protein BDI_1164 1 None None None 150010165 Common - lactoylglutathione lyase BDI_3588 84 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 150007664 Common - iron(III) ABC transporter ATP-binding protein BDI_1019 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 150008208 Common mpi multiple promoter invertase BDI_1574 122 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 150009766 Common - glycoside hydrolase family 92 BDI_3181 33 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150006761 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0087 9 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150010474 Common - conserved hypothetical protein, with a domain of unknown function BDI_3914 10 None None None 150010222 Common - formiminotransferase-cyclodeaminase BDI_3645 22 COG3643 COG3643, Glutamate formiminotransferase Amino acid transport and metabolism 150008873 Common - DNA-directed RNA polymerase subunit beta' BDI_2263 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 150007783 Common - conserved hypothetical exported protein, possible ATP/GTP-binding BDI_1141 6 None None None 150009971 Common - putative outer membrane protein probably involved in nutrient binding BDI_3390 22 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008120 Pathogen - hypothetical protein BDI_1485 1 None None None 150007659 Common - formate-tetrahydrofolate ligase BDI_1014 89 COG2759 MIS1, Formyltetrahydrofolate synthetase Nucleotide transport and metabolism 150008646 Common - uracil-DNA glycosylase BDI_2034 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 150006682 Common - MarC family integral membrane protein BDI_0008 157 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 150007733 Common - TPR domain protein BDI_1091 37 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 150007394 Common - hypothetical protein BDI_0745 4 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 150007677 Common - putative two-component system sensor histidine kinase BDI_1032 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150006995 Common - putative heat shock protein 15 BDI_0331 105 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 150006690 Common - undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase BDI_0016 181 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150009687 Common - glycoside hydrolase family 31, candidate alpha-glycosidase BDI_3102 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 150007742 Common - hypothetical protein BDI_1100 5 None None None 150008769 Common - hypothetical protein BDI_2159 10 COG2253 COG2253, Uncharacterized conserved protein Function unknown 150009245 Common - putative dehydrogenase BDI_2647 49 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150010231 Common - carboxy-terminal processing protease precursor BDI_3657 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150008689 Common - arylsulfatase A BDI_2079 82 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150006905 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0241 10 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009060 Pathogen - hypothetical protein BDI_2461 1 None None None 150006683 Pathogen - hypothetical protein BDI_0009 2 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150008249 Common - glycoside hydrolase family 92 BDI_1618 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150009555 Common - D-tyrosyl-tRNA deacylase BDI_2968 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 150010124 Common - putative transmembrane protein BDI_3544 6 None None None 150010144 Common - flavoprotein BDI_3567 82 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 150010203 Common - putative nucleotide-sugar dehydratase BDI_3626 222 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150010317 Pathogen - hypothetical protein BDI_3751 1 None None None 150008723 Common - hypothetical protein BDI_2113 165 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 150008917 Common - hypothetical protein BDI_2313 6 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 150007907 Pathogen - hypothetical protein BDI_1268 1 None None None 150008817 Common - glycosyltransferase family 4 BDI_2207 145 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007934 Common - glycosyltransferase family 2 BDI_1295 32 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009844 Pathogen - hypothetical protein BDI_3260 1 None None None 150008711 Common - putative phosphoribosylformylglycinamidine cyclo-ligase BDI_2101 226 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 150007607 Common - putative alginate O-acetyltransferase BDI_0960 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 150010300 Common - MotA/TolQ/ExbB proton channel family protein, putative biopolymer transport protein BDI_3733 121 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 150009395 Common - magnesium chelatase subunit ChlI BDI_2803 198 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 150007516 Common - single-strand binding protein BDI_0868 209 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 150006679 Common - dihydroneopterin aldolase BDI_0005 66 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 150006888 Common - cation efflux system protein BDI_0224 162 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150010275 Common - metalloendopeptidase-like membrane protein BDI_3704 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 150007572 Common - excinuclease ABC subunit A BDI_0925 241 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 150008625 Common - formamidopyrimidine-DNA glycosylase BDI_2011 159 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 150009372 Common - glycosyltransferase family 4 BDI_2780 167 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007070 Common smpB SsrA-binding protein BDI_0413 213 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 150008702 Common - aminoacyl-histidine dipeptidase BDI_2092 63 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 150010005 Common - hypothetical protein BDI_3424 16 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 150007736 Common - putative thiamine biosynthesis protein ThiC BDI_1094 8 COG4109 COG4109, Predicted transcriptional regulator containing CBS domains Transcription 150010027 Common - hypothetical protein BDI_3446 3 None None None 150008346 Common - cAMP-binding domain transcriptional regulator BDI_1720 74 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150010224 Common - putative formiminotransferase-cyclodeaminase BDI_3647 40 COG3404 COG3404, Methenyl tetrahydrofolate cyclohydrolase Amino acid transport and metabolism 150010261 Pathogen - hypothetical protein BDI_3690 3 None None None 150010145 Common nagB glucosamine-6-phosphate deaminase BDI_3568 87 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 150007181 Common - RNA polymerase ECF-type sigma factor BDI_0526 137 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008314 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1683 6 None None None 150007288 Common - putative signal transducer BDI_0633 74 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150010515 Common - putative anti-sigma factor BDI_3962 33 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150008791 Pathogen - hypothetical protein BDI_2181 2 None None None 150007349 Common - DNA repair protein recN BDI_0699 203 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 150009632 Pathogen - hypothetical protein BDI_3046 1 None None None 150009945 Common - putative ribokinase BDI_3363 116 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150009787 Common - putative transmembrane protein and transcriptional regulator BDI_3203 48 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150010110 Common - putative membrane transporter involved in nicotinamide mononucleotide transport BDI_3530 62 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 150008431 Common - NiFe hydrogenase small subunit, HupC BDI_1813 50 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 150006924 Common - cofactor-independent phosphoglycerate mutase BDI_0260 53 COG3635 COG3635, Predicted phosphoglycerate mutase, AP superfamily Carbohydrate transport and metabolism 150010284 Common - dipeptidyl peptidase IV BDI_3713 59 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150006881 Common - putative antiporter membrane protein BDI_0215 120 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150007169 Common - electron transport complex protein RnfD BDI_0514 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 150007459 Common - hypothetical protein BDI_0810 7 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 150009350 Common - transcription elongation factor GreA BDI_2758 204 COG0782 GreA, Transcription elongation factor Transcription 150007964 Common - hypothetical protein BDI_1325 32 COG3533 COG3533, Uncharacterized protein conserved in bacteria Function unknown 150007568 Common - hypothetical protein BDI_0921 68 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 150008751 Common - DNA primase BDI_2141 4 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 150008956 Pathogen - hypothetical protein BDI_2352 2 None None None 150007901 Pathogen - hypothetical protein BDI_1261 1 None None None 150007684 Pathogen - hypothetical protein BDI_1039 1 None None None 150009603 Common - hypothetical protein BDI_3016 5 None None None 150009556 Common - hypothetical protein BDI_2969 25 COG1694 MazG, Predicted pyrophosphatase General function prediction only 150006965 Common - glycosyltransferase family 2 BDI_0301 153 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 150009664 Common - putative iron-sulfur cluster-binding protein BDI_3079 132 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 150008553 Common - hypothetical protein BDI_1939 36 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 150007683 Common - serine/threonine protein kinase BDI_1038 151 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 150007118 Common - electron transfer flavoprotein alpha-subunit BDI_0462 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 150009247 Common - cytochrome D ubiquinol oxidase subunit II BDI_2649 115 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 150010126 Common - hypothetical protein BDI_3546 101 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 150009899 Common - two-component system sensor histidine kinase, with response regulator receiver domain BDI_3316 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008947 Pathogen - hypothetical protein BDI_2343 2 None None None 150008455 Common - glycosyltransferase family 2 BDI_1839 49 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007188 Common - competence-damage inducible protein BDI_0533 193 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 150010012 Pathogen - hypothetical protein BDI_3431 2 None None None 150008644 Common - putative transmembrane transport protein BDI_2032 179 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150007021 Common - serine protease BDI_0359 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 150008238 Common - hypothetical protein BDI_1604 18 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008638 Common - aspartate aminotransferase BDI_2026 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 150010266 Common - riboflavin biosynthesis protein ribD BDI_3695 226 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 150007342 Common rpmB 50S ribosomal protein L28 BDI_0692 138 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 150010075 Common - hypothetical protein BDI_3494 6 None None None 150008494 Common - rod shape-determining protein RodA BDI_1880 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 150009400 Common - alanine dehydrogenase BDI_2808 160 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 150007077 Common - integrase BDI_0420 113 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007774 Common - putative helicase BDI_1132 103 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 150007468 Common - glycoside hydrolase family 23 BDI_0819 99 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 150009804 Common - putative biotin apo-protein ligase-related protein BDI_3220 2 COG4285 COG4285, Uncharacterized conserved protein Function unknown 150009096 Pathogen - hypothetical protein BDI_2497 5 None None None 150009933 Common - chromate transport protein BDI_3350 113 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 150009960 Common - dGTP triphosphohydrolase BDI_3378 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 150008333 Common - L-asparaginase I BDI_1705 138 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 150009735 Common - putative methionine aminopeptidase A BDI_3150 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 150007898 Common - transposase BDI_1258 15 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150006793 Common - integrase / site-specific recombinase BDI_0119 98 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008975 Common rpsQ 30S ribosomal protein S17 BDI_2371 226 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 150010483 Common - BexA, putative cation effux pump BDI_3924 70 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150008360 Common - putative D-3-phosphoglycerate dehydrogenase BDI_1734 222 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 150008799 Common - polyphosphate kinase BDI_2189 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 150007384 Common - hypothetical protein BDI_0735 59 COG3177 COG3177, Uncharacterized conserved protein Function unknown 150008697 Common - aldehyde dehydrogenase A BDI_2087 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 150008397 Common - hypothetical protein BDI_1771 4 None None None 150008586 Common - hypothetical protein BDI_1972 2 None None None 150009780 Pathogen - hypothetical protein BDI_3196 3 None None None 150008102 Common - O-antigen transporter BDI_1466 38 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150006712 Common - hypothetical protein BDI_0038 54 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 150007802 Common - putative RNA polymerase ECF-type sigma factor BDI_1160 73 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150006945 Common - hypothetical protein BDI_0281 53 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 150006769 Common - two-component system sensor histidine kinase BDI_0095 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150006912 Common - hypothetical protein BDI_0248 85 COG0433 COG0433, Predicted ATPase General function prediction only 150007221 Common - 3-oxoacyl-[acyl-carrier-protein] reductase BDI_0566 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150006778 Common - fucose permease BDI_0104 50 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 150008506 Common - hypothetical protein BDI_1892 6 None None None 150009525 Pathogen - hypothetical protein BDI_2938 2 None None None 150009591 Pathogen - hypothetical protein BDI_3004 1 None None None 150007553 Common - putative plasmid maintenance system antidote protein BDI_0906 9 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 150009987 Common - hypothetical protein BDI_3406 80 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 150008250 Common - glycoside hydrolase family 92 BDI_1619 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150008530 Common - hypothetical protein BDI_1916 14 COG2830 COG2830, Uncharacterized protein conserved in bacteria Function unknown 150008759 Common - hypothetical protein BDI_2149 11 COG0433 COG0433, Predicted ATPase General function prediction only 150008546 Common - putative periplasmic protein BDI_1932 5 None None None 150008466 Common - ABC transporter, permease protein, putative BDI_1850 45 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 150008718 Common - hypothetical protein BDI_2108 3 None None None 150007460 Common - cold shock protein, putative DNA-binding protein BDI_0811 4 COG1278 CspC, Cold shock proteins Transcription 150007256 Common - hypothetical protein BDI_0601 33 COG1409 Icc, Predicted phosphohydrolases General function prediction only 150007890 Common - hexokinase type III BDI_1250 6 COG5026 COG5026, Hexokinase Carbohydrate transport and metabolism 150008827 Common - hypothetical protein BDI_2217 16 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 150007365 Common - transposase BDI_0716 74 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 150007240 Common - putative alcohol dehydrogenase BDI_0585 164 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 150007367 Pathogen - hypothetical protein BDI_0718 2 None None None 150007972 Common - putative ABC transporter permease protein BDI_1333 152 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 150010360 Common valS valyl-tRNA synthetase BDI_3795 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150007520 Pathogen - hypothetical protein BDI_0872 1 None None None 150010522 Common rplI 50S ribosomal protein L9 BDI_3969 216 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 150009033 Pathogen - hypothetical protein BDI_2429 2 None None None 150007135 Common - putative membrane peptidase BDI_0479 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 150009409 Common - hypothetical protein BDI_2817 2 None None None 150010343 Common - ribose-phosphate pyrophosphokinase BDI_3777 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 150007304 Common - hypothetical protein BDI_0649 3 None None None 150009166 Pathogen - hypothetical protein BDI_2568 1 None None None 150007674 Common - glycoside hydrolase family 23 BDI_1029 114 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 150009425 Common - conserved hypothetical protein, possible ATP/GTP-binding site BDI_2833 3 None None None 150006837 Common - putative hydrolase BDI_0168 110 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 150007870 Common - hypothetical protein BDI_1230 5 None None None 150007913 Common - glycoside hydrolase family 51 BDI_1274 29 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 150007844 Common - hypothetical protein BDI_1202 4 COG1945 COG1945, Uncharacterized conserved protein Function unknown 150010361 Common - two-component system sensor histidine kinase BDI_3796 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009242 Common - putative oxidoreductase BDI_2644 134 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007766 Common - Na(+)-translocating NADH-quinone reductase subunit B BDI_1124 76 COG1805 NqrB, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Energy production and conversion 150009475 Pathogen - hypothetical protein BDI_2888 3 None None None 150007323 Pathogen - hypothetical protein BDI_0668 2 None None None 150008136 Common - xanthine phosphoribosyltransferase BDI_1502 35 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 150009724 Common - glycoside hydrolase family 78 BDI_3139 24 None None None 150008775 Common - hypothetical protein BDI_2165 27 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 150006879 Common - pantoate--beta-alanine ligase BDI_0213 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 150008675 Common - hypothetical protein BDI_2065 2 None None None 150010359 Common - RNA pseudouridylate synthase BDI_3794 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 150010426 Pathogen - hypothetical protein BDI_3866 2 None None None 150007409 Common - putative oxalate:formate antiporter BDI_0760 66 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 150010092 Common - arsenate reductase BDI_3512 140 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 150009013 Common - cell division protein FtsX BDI_2409 95 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 150006844 Common - glycosyltransferase family 2 BDI_0175 208 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007527 Common - hypothetical protein BDI_0880 2 None None None 150008612 Common - putative two-component regulator sensor kinase BDI_1998 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007908 Common - putative ABC transporter ATP-binding protein BDI_1269 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 150008461 Common - polysaccharide pyruvyl transferase YvfF BDI_1845 20 COG5039 COG5039, Exopolysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 150006870 Common - putative 5-formyltetrahydrofolate cyclo-ligase BDI_0204 187 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 150008523 Common - hypothetical protein BDI_1909 62 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150009622 Common - putative outer membrane protein probably involved in nutrient binding BDI_3036 5 None None None 150008913 Common - OmpA-related protein BDI_2309 29 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008589 Common - hypothetical protein BDI_1975 4 None None None 150010374 Common - integrase BDI_3811 162 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150009908 Common - hypothetical protein BDI_3325 5 None None None 150009154 Common - glycoside hydrolase family 23 BDI_2556 129 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 150007201 Common - integrase / site-specific recombinase BDI_0546 98 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008535 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1921 7 None None None 150010493 Common - osmosensitive K+ channel histidine kinase BDI_3934 90 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 150008074 Common - ABC transporter, permease protein, putative BDI_1438 16 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150009515 Common - glycosyltransferase family 4 BDI_2928 219 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007648 Pathogen - hypothetical protein BDI_1003 3 None None None 150009459 Common - putative anti-sigma factor BDI_2872 41 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007748 Pathogen - hypothetical protein BDI_1106 2 None None None 150008843 Common - transposase BDI_2233 66 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 150010332 Common - putative phosphoesterase BDI_3766 60 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 150006700 Common - nucleoside-diphosphate-sugar epimerase BDI_0026 234 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150007546 Pathogen - hypothetical protein BDI_0899 1 None None None 150009304 Common - peptidyl-prolyl cis-trans isomerase, FKBP-type BDI_2706 136 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 150009316 Common - Na+/H+-dicarboxylate symporter BDI_2718 122 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 150007714 Common - putative transport-related exported protein BDI_1069 120 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008198 Common - glycoside hydrolase family 51, candidate alpha-L-arabinofuranosidase BDI_1564 29 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 150007752 Common - Mg2+ transport protein BDI_1110 117 COG1285 SapB, Uncharacterized membrane protein Function unknown 150007826 Common - uncharacterized protein predicted to be involved in DNA repair BDI_1184 51 COG1343 COG1343, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 150009955 Common - glycoside hydrolase family 32, candidate levanase BDI_3373 53 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 150008867 Common - gamma-glutamyl phosphate reductase BDI_2257 187 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 150007982 Common - glycosyltransferase family 2 BDI_1344 148 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007035 Common - transcriptional regulator, putative catabolite control protein A BDI_0378 105 COG1609 PurR, Transcriptional regulators Transcription 150007129 Pathogen - hypothetical protein BDI_0473 1 None None None 150009796 Pathogen - putative lipoprotein BDI_3212 2 None None None 150008172 Pathogen - hypothetical protein BDI_1538 3 None None None 150007482 Common - hypothetical protein BDI_0833 15 COG4219 MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component Transcription / Signal transduction mechanisms 150008144 Pathogen - hypothetical protein BDI_1510 1 None None None 150007064 Common - putative RNA polymerase ECF-type sigma factor BDI_0407 163 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008567 Common - putative diacylglycerol kinase BDI_1953 31 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 150008420 Common - hypothetical protein BDI_1801 183 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 150007836 Common - phenylacetate-coenzyme A ligase BDI_1194 121 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 150009760 Common - hypothetical protein BDI_3175 149 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 150008842 Common - mobilization protein BmgB BDI_2232 4 None None None 150009876 Common - glucokinase BDI_3292 140 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150006970 Common - hypothetical protein BDI_0306 31 None None None 150010128 Common - glutamine amidotransferase, class II/dipeptidase BDI_3548 160 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 150008065 Common - transcriptional regulator BDI_1428 84 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007412 Common - two-component system response regulator BDI_0763 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009122 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2523 35 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007208 Pathogen - hypothetical protein BDI_0553 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150009734 Common - TPR domain protein BDI_3149 6 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 150006855 Common - 4-hydroxythreonine-4-phosphate dehydrogenase BDI_0187 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 150008570 Common - hypothetical protein BDI_1956 26 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150008060 Common - excinuclease ABC, subunit A, daunorubicin resistance protein BDI_1423 242 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 150008187 Common - 1,4-dihydroxy-2-naphthoate octaprenyltransferase BDI_1553 99 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 150008474 Common - hypothetical protein BDI_1860 4 None None None 150008083 Pathogen - hypothetical protein BDI_1447 1 None None None 150009136 Pathogen - hypothetical protein BDI_2537 1 None None None 150008724 Common - hypothetical protein BDI_2114 7 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 150009791 Common - putative Fe-S oxidoreductase BDI_3207 101 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 150009843 Common - hypothetical protein BDI_3259 4 None None None 150009507 Common - TPR-repeat-containing protein BDI_2920 16 COG5059 KIP1, Kinesin-like protein Cytoskeleton 150008593 Common - threonine dehydratase BDI_1979 216 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 150007955 Pathogen - hypothetical protein BDI_1316 1 None None None 150008635 Common - glycosyltransferase family 2 BDI_2023 34 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007372 Pathogen - hypothetical protein BDI_0723 2 None None None 150008296 Common - glucose/galactose transporter BDI_1665 54 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 150009117 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2518 5 None None None 150009237 Pathogen - hypothetical protein BDI_2639 1 None None None 150007379 Pathogen - hypothetical protein BDI_0730 2 None None None 150007226 Common - glycosyltransferase family 4 BDI_0571 6 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008214 Common - putative zinc-binding dehydrogenase BDI_1580 158 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008696 Common - nicotinate-nucleotide pyrophosphorylase BDI_2086 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 150006772 Common - glycine betaine-binding protein precursor BDI_0098 75 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 150009912 Common - putative outer membrane protein TolC BDI_3329 118 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008648 Common - putative methylated-DNA methyltransferase BDI_2036 137 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 150009819 Common - putative O-acetyltransferase BDI_3235 4 COG3594 NolL, Fucose 4-O-acetylase and related acetyltransferases Carbohydrate transport and metabolism 150010304 Common - hypothetical protein BDI_3738 4 None None None 150010475 Common - hypothetical protein BDI_3915 24 None None None 150009466 Common - glucose/galactose transporter BDI_2879 67 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 150008191 Common - transcriptional regulator BDI_1557 129 COG1609 PurR, Transcriptional regulators Transcription 150008972 Common rplE 50S ribosomal protein L5 BDI_2368 248 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 150007162 Common - hypothetical protein BDI_0507 47 COG4198 COG4198, Uncharacterized conserved protein Function unknown 150008814 Common - glycosyltransferase family 2 BDI_2204 175 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007311 Common def peptide deformylase BDI_0656 215 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 150007316 Common infC translation initiation factor IF-3 BDI_0661 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 150009212 Common - RNA polymerase ECF-type sigma factor BDI_2614 164 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007041 Common - UDP-N-acetylglucosamine acetyltransferase BDI_0384 160 COG1043 LpxA, Acyl- acyl carrier protein 150009614 Pathogen - hypothetical protein BDI_3027 2 None None None 150008029 Common - ketoisovalerate oxidoreductase subunit VorA BDI_1392 110 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 150007584 Common - putative TonB-dependent receptor BDI_0937 9 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008682 Common - acetolactate synthase large subunit BDI_2072 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 150008800 Common - conserved hypothetical protein, putative phosphoesterase BDI_2190 29 COG0622 COG0622, Predicted phosphoesterase General function prediction only 150007623 Common - hypothetical protein BDI_0976 35 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150007548 Common - hypothetical protein BDI_0901 3 None None None 150008225 Pathogen - hypothetical protein BDI_1591 1 None None None 150007054 Common - aldo/keto reductase BDI_0397 65 COG1453 COG1453, Predicted oxidoreductases of the aldo/keto reductase family General function prediction only 150008477 Common - transcriptional regulator/glucokinase BDI_1863 160 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150008012 Common - hypothetical protein BDI_1375 31 COG3247 HdeD, Uncharacterized conserved protein Function unknown 150008436 Common - glycosyltransferase family 51, candidate bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase BDI_1818 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 150007793 Common upp uracil phosphoribosyltransferase BDI_1151 163 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 150006689 Pathogen - putative transcriptional regulator UpxY-like protein BDI_0015 2 COG0250 NusG, Transcription antiterminator Transcription 150008271 Common - putative RNA polymerase ECF-type sigma factor BDI_1640 93 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008661 Common - hypothetical protein BDI_2051 9 None None None 150009753 Common - putative hemolysin secretion transport system membrane protein BDI_3168 67 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 150006938 Common - multidrug resistance protein BDI_0274 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150006863 Common secG preprotein translocase subunit SecG BDI_0195 4 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 150007860 Common - outer membrane protein, OmpA family BDI_1220 171 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150006935 Common - F0F1 ATP synthase subunit beta BDI_0271 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 150006698 Pathogen - hypothetical protein BDI_0024 1 None None None 150008266 Common - putative ABC transporter permease BDI_1635 12 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150007590 Pathogen - putative DNA-binding protein HU BDI_0943 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150008761 Common - hypothetical protein BDI_2151 43 COG3472 COG3472, Uncharacterized conserved protein Function unknown 150006894 Common - glycoside hydrolase family 2, candidate beta-galactosidase BDI_0230 68 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150009977 Common - alkyl hydroperoxide reductase subunit C BDI_3396 223 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150007635 Common - putative glucose-fructose oxidoreductase BDI_0988 114 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008707 Common - phosphoglucomutase phosphomannomutase BDI_2097 239 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 150009887 Common - O-methyltransferase BDI_3303 102 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 150010245 Common - fructose-1,6-bisphosphatase BDI_3671 18 COG3855 Fbp, Uncharacterized protein conserved in bacteria Carbohydrate transport and metabolism 150009939 Common - two-component system sensor histidine kinase BDI_3356 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150007944 Common - RNA polymerase ECF-type sigma factor BDI_1305 124 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008915 Common - putative helicase BDI_2311 91 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 150006993 Common - hypothetical protein BDI_0329 42 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 150009101 Common - hypothetical protein BDI_2502 5 None None None 150010150 Common - membrane fusion efflux protein BDI_3573 167 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007088 Common - putative carbamoyl phosphate synthase large subunit BDI_0431 41 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 150008247 Common - hypothetical protein BDI_1616 13 COG1102 Cmk, Cytidylate kinase Nucleotide transport and metabolism 150009924 Common - hypothetical protein BDI_3341 8 None None None 150009064 Common - hypothetical protein BDI_2465 14 None None None 150009767 Common - putative outer membrane protein probably involved in nutrient binding BDI_3182 6 None None None 150010258 Common - hypothetical protein BDI_3684 18 None None None 150008282 Common - glycosyltransferase family 2 BDI_1651 156 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007936 Common - glycosyltransferase family 2 BDI_1297 105 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007370 Pathogen - hypothetical protein BDI_0721 1 None None None 150007377 Pathogen - hypothetical protein BDI_0728 2 None None None 150008212 Common - putative UDP-ManNAc dehydrogenase BDI_1578 207 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 150009062 Common - putative alpha-galactosidase precursor BDI_2463 4 None None None 150007855 Common - putative calcineurin superfamily phosphohydrolase BDI_1215 12 COG1409 Icc, Predicted phosphohydrolases General function prediction only 150008677 Pathogen - hypothetical protein BDI_2067 1 None None None 150009542 Common - hypothetical protein BDI_2955 112 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 150009388 Common - hypothetical protein BDI_2796 3 None None None 150007969 Common - hypothetical protein BDI_1330 2 None None None 150007556 Pathogen - hypothetical protein BDI_0909 1 None None None 150009311 Common - hypothetical protein BDI_2713 5 COG1476 COG1476, Predicted transcriptional regulators Transcription 150010130 Common - DNA gyrase, B subunit BDI_3550 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 150007708 Common - hypothetical protein BDI_1063 16 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 150007645 Pathogen - hypothetical protein BDI_1000 1 None None None 150008160 Common - hypothetical protein BDI_1526 6 None None None 150009482 Common - amino acid carrier protein BDI_2895 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 150008901 Common - hypothetical protein BDI_2296 8 None None None 150007250 Common - RNA polymerase ECF-type sigma factor BDI_0595 87 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007426 Pathogen - hypothetical protein BDI_0777 1 None None None 150009051 Common - conserved hypothetical protein, putative phage baseplate assembly protein W BDI_2452 27 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 150009671 Common - hypothetical protein BDI_3086 31 None None None 150006751 Common - biotin carboxyl carrier protein BDI_0077 193 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 150008714 Common - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase BDI_2104 162 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 150007764 Common - Na(+)-translocating NADH-quinone reductase subunit D BDI_1122 76 COG1347 NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD Energy production and conversion 150009161 Common - putative biotin-(acetyl-CoA carboxylase) synthetase BDI_2563 222 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 150008879 Common - transcription anti-termination protein BDI_2269 214 COG0250 NusG, Transcription antiterminator Transcription 150009582 Pathogen - hypothetical protein BDI_2995 2 None None None 150008053 Pathogen - hypothetical protein BDI_1416 1 None None None 150007995 Pathogen - hypothetical protein BDI_1357 2 None None None 150007589 Common - putative Fe-S oxidoreductase BDI_0942 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 150008487 Common - hypothetical protein BDI_1873 9 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150010392 Common - putative dTDP-glucose 4-6-dehydratase BDI_3829 183 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150007158 Common - hypothetical protein BDI_0503 5 None None None 150007233 Common - amidophosphoribosyltransferase BDI_0578 231 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 150008519 Common - putative anti-sigma factor BDI_1905 34 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150009004 Common - glycoside hydrolase family 43, candidate beta-glycosidase BDI_2400 10 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 150009832 Common - mobilization protein BmgB BDI_3248 4 None None None 150008985 Common rpsJ 30S ribosomal protein S10 BDI_2381 245 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 150008155 Common - thiol:disulfide interchange protein BDI_1521 136 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150010405 Common - hypothetical protein BDI_3842 9 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 150008924 Common - arylsulfatase A BDI_2320 87 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150009978 Common - alkyl hydroperoxide reductase subunit F BDI_3397 247 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 150008960 Common - 30S ribosomal protein S11 BDI_2356 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 150008322 Common - phosphoglucomutase BDI_1691 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 150008388 Common - hypothetical protein BDI_1762 5 None None None 150010400 Common - diaminopimelate decarboxylase BDI_3837 168 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 150007817 Common - glycosylhydrolase of carbon-nitrogen family, putative beta-ureidopropionase BDI_1175 204 COG0388 COG0388, Predicted amidohydrolase General function prediction only 150008948 Common - putative two-component system sensor protein histidine kinase BDI_2344 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150007757 Common - hypothetical protein BDI_1115 35 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 150006803 Pathogen - hypothetical protein BDI_0129 1 None None None 150009286 Common - two-component system response regulator protein BDI_2688 105 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150008307 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1676 6 None None None 150007432 Common - xylose isomerase BDI_0783 68 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 150007692 Common - hypothetical protein BDI_1047 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 150010407 Common - dehydrogenase, putative exo-alpha-sialidase BDI_3844 36 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007264 Pathogen - hypothetical protein BDI_0609 2 None None None 150010393 Common - putative teichoic acid biosynthesis protein F BDI_3830 26 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 150009345 Common - peptide chain release factor RF-2 BDI_2753 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 150008167 Common - conserved hypothetical protein, putative transmembrane protein BDI_1533 67 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 150009572 Pathogen - putative excisionase BDI_2985 5 COG3311 AlpA, Predicted transcriptional regulator Transcription 150006680 Common - putative hydrogenase BDI_0006 81 COG4624 COG4624, Iron only hydrogenase large subunit, C-terminal domain General function prediction only 150008840 Pathogen - hypothetical protein BDI_2230 2 None None None 150009264 Common - TPR-repeat-containing protein BDI_2666 23 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 150007151 Common - hypothetical protein BDI_0496 5 None None None 150008572 Common - putative ABC transporter permease component BDI_1958 45 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150010472 Common - putative aluminum resistance protein BDI_3912 175 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 150007007 Common - hypothetical protein BDI_0343 4 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 150008923 Common - putative secreted sulfatase precursor BDI_2319 90 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150009702 Common - putative outer membrane protein probably involved in nutrient binding BDI_3117 5 None None None 150007617 Common - putative cysteine synthase BDI_0970 220 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 150007246 Common - anthranilate synthase component I BDI_0591 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 150009011 Common - putative undecaprenol kinase BDI_2407 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 150010167 Common - putative mutT family protein BDI_3590 28 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 150009320 Common - putative surface protein BDI_2722 48 COG2431 COG2431, Predicted membrane protein Function unknown 150009056 Pathogen - hypothetical protein BDI_2457 1 None None None 150007731 Common - negative regulator of genetic competence BDI_1089 232 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 150009201 Common - putative iron-regulated protein A precursor BDI_2603 30 COG3487 IrpA, Uncharacterized iron-regulated protein Inorganic ion transport and metabolism 150008655 Common - hypothetical protein BDI_2045 4 None None None 150008227 Common - putative N-acetylmuramoyl-L-alanine amidase BDI_1593 17 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 150007974 Common - hypothetical protein BDI_1336 138 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 150009682 Common - putative integral membrane protein BDI_3097 94 COG1238 COG1238, Predicted membrane protein Function unknown 150008130 Common - ribosomal large subunit pseudouridine synthase D BDI_1495 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 150010298 Common - hypothetical protein BDI_3731 5 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 150008620 Pathogen - putative outer membrane protein precursor BDI_2006 5 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 150007986 Common - putative glycero-phosphotransferase BDI_1348 31 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 150009992 Common - TonB-dependent receptor BDI_3411 121 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150007271 Common - putative transcription-repair coupling factor BDI_0616 223 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 150008019 Common - putative cAMP-binding domain, regulatory protein BDI_1382 18 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150009256 Common - putative vitamin B12 receptor precursor BDI_2658 116 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009193 Pathogen - hypothetical protein BDI_2595 3 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150006677 Common - glycoside hydrolase family 77, candidate 4-alpha-glucanotransferase BDI_0003 119 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 150009878 Common - putatve sugar transporter BDI_3294 156 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150006986 Common - diaminopimelate epimerase BDI_0322 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 150009295 Common - hypothetical protein BDI_2697 6 None None None 150009686 Common - two-component system sensor histidine kinase/response regulator, hybrid BDI_3101 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007277 Common - transcriptional regulator BDI_0622 119 COG1414 IclR, Transcriptional regulator Transcription 150007281 Common - hypothetical protein BDI_0626 83 COG1262 COG1262, Uncharacterized conserved protein Function unknown 150010052 Common - putative acylaminoacyl-peptidase BDI_3471 70 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150007804 Common - putative ATP-dependent DNA helicase BDI_1162 230 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 150009149 Common - transcriptional regulator BDI_2551 167 COG1522 Lrp, Transcriptional regulators Transcription 150008386 Common - malonyl CoA-acyl carrier protein transacylase BDI_1760 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 150009827 Pathogen - putative transcriptional regulator UpxY-like protein BDI_3243 2 None None None 150009742 Common - TPR-repeat-containing protein BDI_3157 13 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 150007330 Common - putative thioredoxin BDI_0680 95 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 150006832 Common - methylmalonyl-CoA decarboxylase, alpha subunit BDI_0163 205 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 150008941 Common - L-threonine-O-3-phosphate decarboxylase, putative BDI_2337 231 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 150007821 Common - hypothetical protein BDI_1179 26 None None None 150010328 Common - hypothetical protein BDI_3762 21 None None None 150010323 Pathogen - hypothetical protein BDI_3757 1 None None None 150008672 Common - 3-isopropylmalate dehydratase small subunit LeuD BDI_2062 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 150009495 Common - multidrug resistance protein BDI_2908 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007595 Common - conserved hypothetical protein BatA BDI_0948 86 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 150009675 Pathogen - hypothetical protein BDI_3090 2 None None None 150007536 Pathogen - hypothetical protein BDI_0889 1 None None None 150008726 Common - hypothetical protein BDI_2116 18 COG4864 COG4864, Uncharacterized protein conserved in bacteria Function unknown 150010503 Common - glycosyltransferase family 2 BDI_3945 50 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007912 Common - putative carbon-nitrogen hydrolase BDI_1273 182 COG0388 COG0388, Predicted amidohydrolase General function prediction only 150009076 Common - RNA polymerase ECF-type sigma factor BDI_2477 92 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150010102 Pathogen - hypothetical protein BDI_3522 1 None None None 150007022 Common - RNA polymerase sigma factor rpoD BDI_0360 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 150008855 Common - putative peptidyl-prolyl cis-trans isomerase, FKBP-type BDI_2245 22 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 150009531 Common - putative outer membrane protein probably involved in nutrient binding BDI_2944 49 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150007100 Pathogen - conserved hypothetical protein, putative DNA-binding protein, histone-like family BDI_0443 3 None None None 150009087 Common - rod shape-determining protein rodA BDI_2488 205 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 150009028 Common - ABC transporter, ATP-binding protein, MsbA family BDI_2424 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 150006823 Pathogen - hypothetical protein BDI_0154 2 None None None 150008374 Common - hypothetical protein BDI_1748 4 COG3828 COG3828, Uncharacterized protein conserved in bacteria Function unknown 150010081 Pathogen - hypothetical protein BDI_3501 3 COG3943 COG3943, Virulence protein General function prediction only 150007328 Common nrfA cytochrome c nitrite reductase BDI_0675 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 150009073 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2474 5 None None None 150008418 Common - indolepyruvate oxidoreductase subunit B BDI_1799 104 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 150007382 Common - hypothetical protein BDI_0733 20 None None None 150007214 Common - putative ATP-grasp enzyme BDI_0559 25 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 150007444 Common - sulfate adenylyltransferase subunit 2 BDI_0795 135 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 150010435 Pathogen - hypothetical protein BDI_3875 2 None None None 150006782 Common - quinol oxidase BDI_0108 33 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 150008839 Common - transposase BDI_2229 8 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007632 Common - hypothetical protein BDI_0985 4 None None None 150007813 Common - hypothetical protein BDI_1171 5 None None None 150008669 Common - 3-isopropylmalate dehydrogenase LeuB BDI_2059 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 150009538 Common - 2-amino-3-ketobutyrate CoA ligase BDI_2951 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 150009995 Common - galactoside O-acetyltransferase BDI_3414 188 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150009455 Pathogen - hypothetical protein BDI_2868 2 None None None 150008908 Common - methylmalonyl-CoA mutase, small subunit BDI_2303 109 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 150009450 Common - hypothetical protein BDI_2863 8 None None None 150008406 Common - hypothetical protein BDI_1782 18 None None None 150008031 Common - hypothetical protein BDI_1394 6 None None None 150008124 Common - putative collagenase BDI_1489 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 150007178 Common - putative Na+/H+ antiporter BDI_0523 212 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 150006811 Common - hypothetical protein BDI_0142 91 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 150009044 Common - hypothetical protein BDI_2445 9 None None None 150007171 Common - ferredoxin BDI_0516 123 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 150007925 Common - glycosyltransferase family 32 BDI_1286 11 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 150008785 Common - putative acetyltransferase BDI_2175 152 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150009383 Common metG methionyl-tRNA synthetase BDI_2791 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150009180 Common - aminoacyl-histidine dipeptidase BDI_2582 55 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 150009636 Common - hypothetical protein BDI_3050 4 COG4326 Spo0M, Sporulation control protein General function prediction only 150009690 Common - hypothetical protein BDI_3105 52 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 150009444 Common - phosphonoacetaldehyde hydrolase BDI_2852 31 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 150008295 Common - aldose 1-epimerase BDI_1664 92 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 150007609 Common - hypothetical protein BDI_0962 62 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 150007594 Common - hypothetical protein BDI_0947 10 None None None 150009357 Common - fumarate hydratase class I, anaerobic BDI_2765 146 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 150010109 Common - hypothetical protein BDI_3529 32 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 150010350 Common hisS histidyl-tRNA synthetase BDI_3784 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150009232 Common - hypothetical protein BDI_2634 19 COG5464 COG5464, Uncharacterized conserved protein Function unknown 150006956 Pathogen - hypothetical protein BDI_0292 3 None None None 150007876 Common - epimerase/reductase, putative BDI_1236 103 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150009366 Common - putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase BDI_2774 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150007036 Common - hypothetical protein BDI_0379 16 COG5473 COG5473, Predicted integral membrane protein Function unknown 150007238 Common - putative electron transport protein BDI_0583 95 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 150009699 Common - RNA polymerase ECF-type sigma factor BDI_3114 163 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009140 Common - 3-dehydroquinate synthase BDI_2542 205 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 150009648 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3063 6 None None None 150008936 Common - glycoside hydrolase family 92 BDI_2332 28 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150009339 Common - glycoside hydrolase family 13, candidate alpha-glycosidase BDI_2746 176 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 150006714 Common - putative serine acetyltransferase, putative hexapeptide transferase family protein BDI_0040 87 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 150009152 Common - putative two-component response regulator BDI_2554 113 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150010346 Common - hypothetical protein BDI_3780 10 COG4912 COG4912, Predicted DNA alkylation repair enzyme DNA replication, recombination, and repair 150008997 Common - inosine-5'-monophosphate dehydrogenase BDI_2393 242 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 150008804 Common - hypothetical protein BDI_2194 69 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 150009321 Pathogen - hypothetical protein BDI_2723 1 None None None 150008884 Common rpsU 30S ribosomal protein S21 BDI_2279 5 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 150007476 Common - V-type ATP synthase subunit A BDI_0827 247 COG1155 NtpA, Archaeal/vacuolar-type H+-ATPase subunit A Energy production and conversion 150008599 Pathogen - hypothetical protein BDI_1985 2 None None None 150010491 Common - K+-transporting ATPase C chain BDI_3932 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 150009560 Common - protein AraJ BDI_2973 182 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150008201 Common - aldo/keto reductase BDI_1567 193 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 150008353 Common - cation/H+ antiporter BDI_1727 206 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 150009435 Pathogen - hypothetical protein BDI_2843 1 None None None 150007400 Common - hypothetical protein BDI_0751 2 None None None 150010256 Common - putative NADPH-dependent glutamate synthase BDI_3682 226 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 150008797 Common - hypothetical protein BDI_2187 6 None None None 150007079 Pathogen - hypothetical protein BDI_0422 2 None None None 150008588 Pathogen - hypothetical protein BDI_1974 1 None None None 150008658 Pathogen - hypothetical protein BDI_2048 3 None None None 150009164 Pathogen - hypothetical protein BDI_2566 3 None None None 150010247 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3673 5 None None None 150009630 Common - hypothetical protein BDI_3044 82 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 150007513 Pathogen - hypothetical protein BDI_0865 1 None None None 150006719 Common - hypothetical protein BDI_0045 6 None None None 150007896 Common - clindamycin resistance transfer factor BtgB BDI_1256 3 None None None 150008457 Common - pyrophosphorylase BDI_1841 235 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 150008821 Common - glycosyltransferase family 2 BDI_2211 200 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009922 Common - putative anti-sigma factor BDI_3339 38 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150010447 Common - conserved protein found in conjugate transposon BDI_3887 4 None None None 150008366 Common - catalase BDI_1740 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 150009598 Common - putative immunoreactive 84 kDa antigen PG93 BDI_3011 11 COG3292 COG3292, Predicted periplasmic ligand-binding sensor domain Signal transduction mechanisms 150007991 Common - putative polysaccharide transporter/flippase BDI_1353 106 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150009962 Common - hypothetical protein BDI_3380 5 None None None 150007386 Pathogen - hypothetical protein BDI_0737 2 None None None 150010045 Common - putative outer membrane protein probably involved in nutrient binding BDI_3464 29 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150007010 Common - efflux transporter, MFP component, RND family BDI_0347 123 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150006940 Common - putative multidrug resistance protein BDI_0276 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150006903 Common - putative RNA polymerase ECF-type sigma factor BDI_0239 113 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007579 Common - glycosyltransferase family 51, candidate bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase BDI_0932 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 150006918 Pathogen - hypothetical protein BDI_0254 2 None None None 150010007 Common - putative calcium dependent protease BDI_3426 123 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 150008492 Common - hypothetical protein BDI_1878 58 COG1774 COG1774, Uncharacterized homolog of PSP1 Function unknown 150008508 Pathogen - hypothetical protein BDI_1894 2 None None None 150009574 Common - translation-associated GTPase BDI_2987 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 150007362 Common - putative alanyl dipeptidyl peptidase BDI_0713 108 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150008699 Common - conserved hypothetical protein, putative septum formation initiator-related protein BDI_2089 4 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 150008757 Pathogen - hypothetical protein BDI_2147 1 None None None 150010021 Pathogen - hypothetical protein BDI_3440 2 None None None 150006947 Common - hypothetical protein BDI_0283 5 None None None 150008548 Pathogen - hypothetical protein BDI_1934 3 None None None 150007988 Common - hypothetical protein BDI_1350 213 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 150008977 Common rplP 50S ribosomal protein L16 BDI_2373 218 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 150009985 Common - conserved hypothetical protein, putative iron uptake factor BDI_3404 48 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 150007261 Common - two-component system response regulator BDI_0606 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150010520 Common rpsF 30S ribosomal protein S6 BDI_3967 204 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 150009332 Common - glycoside hydrolase family 29 BDI_2739 28 COG3669 COG3669, Alpha-L-fucosidase Carbohydrate transport and metabolism 150010341 Common - conserved hypothetical protein, putative membrane protein BDI_3775 157 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 150007704 Common - thiamine biosynthesis protein ThiC BDI_1059 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 150007062 Common - putative TonB-dependent outer membrane receptor protein BDI_0405 27 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009331 Common - hypothetical protein BDI_2733 4 None None None 150006910 Common - helicase domain protein BDI_0246 29 COG4889 COG4889, Predicted helicase General function prediction only 150008737 Common - excisionase in mobilizable transposon, xis protein BDI_2127 5 COG3311 AlpA, Predicted transcriptional regulator Transcription 150006796 Pathogen - hypothetical protein BDI_0122 2 None None None 150010073 Common - 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II BDI_3492 230 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 150009662 Common - hypothetical protein BDI_3077 14 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 150010019 Common - hypothetical protein BDI_3438 3 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 150007026 Common - glycoside hydrolase family 3, candidate beta-glucosidase BDI_0369 124 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150007953 Common - iron-sulfur flavoprotein BDI_1314 54 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 150009018 Common - glycoside hydrolase family 78 BDI_2414 10 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 150007223 Pathogen - putative acyl carrier protein BDI_0568 2 None None None 150010079 Pathogen - hypothetical protein BDI_3499 1 None None None 150009596 Common - putative transporter BDI_3009 68 COG1284 COG1284, Uncharacterized conserved protein Function unknown 150007396 Pathogen - hypothetical protein BDI_0747 2 None None None 150008520 Common - RNA polymerase ECF-type sigma factor BDI_1906 8 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009903 Common - hypothetical protein BDI_3320 40 COG2311 COG2311, Predicted membrane protein Function unknown 150008100 Common - putative ornithine cyclodeaminase BDI_1464 56 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 150009266 Common - putative outer membrane protein BDI_2668 7 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150009407 Common - mannosyltransferase BDI_2815 169 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009473 Pathogen - hypothetical protein BDI_2886 2 None None None 150010278 Common - hypothetical protein BDI_3707 7 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 150009643 Common - TatD-related DNase BDI_3057 116 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 150007840 Common - putative dipeptidase BDI_1198 25 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 150009279 Common - TPR-domain containing protein BDI_2681 133 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 150008344 Pathogen - hypothetical protein BDI_1718 2 None None None 150008433 Common - glycerol uptake facilitator protein BDI_1815 130 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 150010469 Common - putative transcriptional regulator BDI_3909 92 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150007242 Common - N-(5'-phosphoribosyl) anthranilate isomerase BDI_0587 191 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 150007799 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1157 6 None None None 150009318 Common - putative exported tricorn protease BDI_2720 126 COG4946 COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system Function unknown 150007130 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_0474 72 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150010132 Common - hypothetical protein BDI_3554 20 None None None 150010367 Common - glutamate dehydrogenase BDI_3804 166 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 150008028 Common - 2-ketoisovalerate ferredoxin reductase BDI_1391 126 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 150006886 Common - putative aminopeptidase BDI_0222 40 COG2234 Iap, Predicted aminopeptidases General function prediction only 150009722 Pathogen - hypothetical protein BDI_3137 3 None None None 150007658 Pathogen - hypothetical protein BDI_1013 1 None None None 150007809 Common - putative transcriptional regulator BDI_1167 23 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150010313 Common - hypothetical protein BDI_3747 32 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 150006710 Pathogen - hypothetical protein BDI_0036 1 None None None 150006813 Common - putative secreted glycosylhydrolase BDI_0144 3 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 150009107 Common - hydrolase, haloacid dehalogenase-like family BDI_2508 89 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 150010147 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3570 6 None None None 150007930 Pathogen - hypothetical protein BDI_1291 1 None None None 150008148 Pathogen - hypothetical protein BDI_1514 1 None None None 150008204 Common - cyclophilin-type peptidyl-prolyl cis-trans isomerase BDI_1570 189 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 150010273 Common - glutamate racemase BDI_3702 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 150010451 Common - conserved protein found in conjugate transposon BDI_3891 58 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 150008811 Common - mannose-6-phosphate isomerase BDI_2201 166 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 150007673 Common - hypothetical protein BDI_1028 7 None None None 150010014 Common - drug efflux protein BDI_3433 175 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150010495 Common - aspartokinase BDI_3936 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 150008537 Common - transcriptional regulator BDI_1923 68 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008991 Common - DNA mismatch repair protein mutL BDI_2387 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 150009823 Common - putative capsular polysaccharide biosythesis protein BDI_3239 39 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 150007681 Pathogen - hypothetical protein BDI_1036 3 None None None 150009737 Common - N-acetylglucosamine-6-phosphate deacetylase BDI_3152 124 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 150007959 Common - rhamnulose-1-phosphate aldolase BDI_1320 43 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 150008450 Common - dTDP-glucose 4,6-dehydratase BDI_1834 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 150007340 Common - dihydrolipoamide dehydrogenase BDI_0690 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 150006757 Common - hypothetical protein BDI_0083 12 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 150007326 Common - alanyl-tRNA synthetase BDI_0673 142 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 150009048 Common - hypothetical protein BDI_2449 22 None None None 150009249 Common - ribonuclease Z BDI_2651 122 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 150007966 Common - putative peptidase BDI_1327 101 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 150008236 Common - peptidyl-dipeptidase BDI_1602 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 150009227 Common - hypothetical protein BDI_2629 42 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 150007952 Common - hypothetical protein BDI_1313 17 None None None 150007123 Common - glycine dehydrogenase BDI_0467 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 150006731 Common - putative N-acyl-D-glucosamine 2-epimerase BDI_0057 35 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 150007111 Common - thiol-disulfide isomerase and thioredoxin BDI_0455 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 150006963 Common - undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase BDI_0299 187 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150007249 Common - sugar phosphate isomerase/epimerase BDI_0594 35 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150009479 Common - hypothetical protein BDI_2892 57 COG3910 COG3910, Predicted ATPase General function prediction only 150010189 Common - putative N-acetylmuramoyl-L-alanine amidase BDI_3612 16 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 150009015 Common - hypothetical protein BDI_2411 4 None None None 150008888 Common - putative aminopeptidase BDI_2283 196 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 150010418 Common - glycine betaine/L-proline transport system permease BDI_3858 202 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 150008945 Common rplS 50S ribosomal protein L19 BDI_2341 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 150010180 Common - rhomboid family protein BDI_3603 121 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 150008866 Common - gamma-glutamyl kinase BDI_2256 190 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 150007823 Common - uncharacterized protein predicted to be involved in DNA repair BDI_1181 55 COG3649 COG3649, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 150009931 Common coaD phosphopantetheine adenylyltransferase BDI_3348 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 150008081 Common - hypothetical protein BDI_1445 60 COG2985 COG2985, Predicted permease General function prediction only 150009628 Pathogen - hypothetical protein BDI_3042 3 None None None 150009348 Common - hypothetical protein BDI_2756 19 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 150010293 Common - ribosomal large subunit pseudouridine synthase B BDI_3726 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 150008565 Common - two-component system response regulator protein BDI_1951 161 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150007641 Common - outer membrane protein, putative OmpA domain protein BDI_0996 162 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150009618 Common - putative sulfate transporter permease BDI_3031 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 150008180 Common - putative biopolymer transport protein ExbB BDI_1546 120 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 150009230 Pathogen - hypothetical protein BDI_2632 3 None None None 150008472 Common - putative N utilization substance protein BDI_1858 68 COG0781 NusB, Transcription termination factor Transcription 150007525 Pathogen - hypothetical protein BDI_0878 2 None None None 150008954 Common - hypothetical protein BDI_2350 3 None None None 150009640 Common - possible uroporphyrinogen-III synthase BDI_3054 7 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 150010121 Common - glycoside hydrolase family 13, candidate alpha-glycosidase BDI_3541 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 150009889 Common - hypothetical protein BDI_3305 145 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150007033 Common - mannonate dehydratase BDI_0376 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 150010152 Common - ABC transporter, permease protein, putative BDI_3575 10 None None None 150009957 Common - glucose/galactose transporter BDI_3375 93 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 150008057 Pathogen - putative transcriptional regulator UpxY-like protein BDI_1420 2 COG0250 NusG, Transcription antiterminator Transcription 150009551 Common - hypothetical protein BDI_2964 9 None None None 150007414 Common - two-component system sensor histidine kinase, with response regulator receiver domain BDI_0765 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009416 Common - putative transmembrane transport protein BDI_2824 167 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150006972 Common rplU 50S ribosomal protein L21 BDI_0308 191 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 150009802 Common - hypothetical protein BDI_3218 121 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 150010238 Common - ABC transporter ATP-binding protein BDI_3664 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 150009464 Common - galactosamine-6-phosphate isomerase BDI_2877 82 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 150009748 Common - putative Fe-S oxidoreductase BDI_3163 50 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 150009829 Common - transposase BDI_3245 8 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150009235 Pathogen - hypothetical protein BDI_2637 2 None None None 150009910 Common - ATP:cob(I)alamin adenosyltransferase, putative BDI_3327 130 COG2096 COG2096, Uncharacterized conserved protein Function unknown 150008185 Common - putative 7-alpha-hydroxysteroid dehydrogenase BDI_1551 8 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 150008575 Common - ABC transporter permease BDI_1961 16 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150007347 Common - flavoprotein BDI_0697 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 150008094 Common - hypothetical protein BDI_1458 2 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 150009695 Common - putative outer membrane protein probably involved in nutrient binding BDI_3110 20 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150008787 Common - putative acetyltransferase BDI_2177 12 COG2153 ElaA, Predicted acyltransferase General function prediction only 150010477 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3918 6 None None None 150010302 Common - putative isoprenoid biosynthesis related protein BDI_3736 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 150008231 Common - hypothetical protein BDI_1597 3 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 150009508 Pathogen - hypothetical protein BDI_2921 1 None None None 150010240 Common - putative nucleotidyltransferase BDI_3666 20 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 150009789 Common - two-component system sensor histidine kinase, with response regulator receiver domain BDI_3205 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007484 Common - hypothetical protein BDI_0835 71 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 150010161 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3584 13 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150006746 Common - putative Zn-dependent protease with chaperone function BDI_0072 131 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 150008683 Common - dihydroxy-acid dehydratase BDI_2073 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 150010383 Pathogen - hypothetical protein BDI_3820 3 None None None 150009461 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2874 6 None None None 150008421 Common - serine type site-specific recombinase Mpi BDI_1803 52 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 150007374 Pathogen - hypothetical protein BDI_0725 1 None None None 150007164 Common - two-component sensor histidine kinase with response regulator receiver domain BDI_0509 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008704 Common - hypothetical protein BDI_2094 18 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 150008189 Pathogen - hypothetical protein BDI_1555 1 None None None 150009258 Common ruvA Holliday junction DNA helicase motor protein BDI_2660 211 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 150007928 Common - replicative DNA helicase BDI_1289 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 150009810 Common - mannose-6-phosphate isomerase BDI_3226 167 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 150008170 Common - putative fosmidomycin resistance protein BDI_1536 59 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150008673 Common - isopropylmalate isomerase large subunit BDI_2063 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 150009115 Common - hypothetical protein BDI_2516 12 None None None 150007211 Pathogen - hypothetical protein BDI_0556 1 None None None 150009990 Common - anaerobic cobalt chelatase CbiK BDI_3409 24 COG4822 CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase Coenzyme metabolism 150010504 Common - putative exported xanthan lyase/N-acetylmuramoyl-L-alanine amidase BDI_3946 5 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 150007998 Common - cobyric acid synthase BDI_1360 151 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 150009374 Common - putative glycosyltransferase BDI_2782 23 None None None 150006723 Pathogen - hypothetical protein BDI_0049 2 None None None 150008982 Common rplW 50S ribosomal protein L23 BDI_2378 207 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 150009244 Common - hypothetical protein BDI_2646 8 None None None 150010282 Common - hypothetical protein BDI_3711 33 None None None 150010416 Common - putative sulfate transporter permease BDI_3856 163 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 150009486 Common - hypothetical protein BDI_2899 42 COG2234 Iap, Predicted aminopeptidases General function prediction only 150009341 Common - putative multi-domain protein BDI_2748 8 None None None 150010084 Common - mobilization protein BmgB BDI_3504 4 None None None 150007203 Pathogen - putative transcriptional regulator UpxY-like protein BDI_0548 2 COG0250 NusG, Transcription antiterminator Transcription 150009527 Common - putative xylose repressor BDI_2940 158 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150009929 Common - hypothetical protein BDI_3346 36 None None None 150009897 Common - acyltransferase BDI_3314 96 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 150008312 Common - conserved hypothetical protein, putative anti-sigma factor BDI_1681 42 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007407 Common - serine protease BDI_0758 214 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 150009950 Common - hypothetical protein BDI_3368 69 COG1624 COG1624, Uncharacterized conserved protein Function unknown 150006846 Common - hypothetical protein BDI_0178 5 None None None 150008525 Common - putative H+/peptide symporter BDI_1911 81 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 150007503 Pathogen - hypothetical protein BDI_0855 1 None None None 150008114 Common - putative rubrerythrin BDI_1479 28 COG1592 COG1592, Rubrerythrin Energy production and conversion 150008393 Common - aminopeptidase BDI_1767 67 COG2234 Iap, Predicted aminopeptidases General function prediction only 150007789 Common - putative hydrolase BDI_1147 103 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 150008773 Pathogen - hypothetical protein BDI_2163 4 None None None 150006978 Common - hypothetical protein BDI_0314 158 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150009423 Common - putative auxin-regulated protein BDI_2831 11 None None None 150006872 Common - deoxycytidylate deaminase BDI_0206 105 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 150008072 Common - putative oligopeptide transporter BDI_1436 42 COG1297 COG1297, Predicted membrane protein Function unknown 150006890 Common - outer membrane efflux protein precursor BDI_0226 65 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150009457 Pathogen - hypothetical protein BDI_2870 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150009605 Pathogen - hypothetical protein BDI_3018 1 None None None 150007500 Common - hypothetical protein BDI_0852 8 None None None 150008555 Common - putative transport protein BDI_1941 216 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150010428 Pathogen - hypothetical protein BDI_3868 2 None None None 150009271 Common - acetylornithine aminotransferase, putative BDI_2673 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 150007853 Common - hypothetical protein BDI_1213 6 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 150006899 Common - ABC transporter ATP-binding protein BDI_0235 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 150007095 Pathogen - hypothetical protein BDI_0438 1 None None None 150009517 Pathogen - hypothetical protein BDI_2930 2 None None None 150006707 Common - glycosyltransferase family 4 BDI_0033 25 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008134 Common - putative beta-lactamase class C, putative 6-aminohexanoate-dimer hydrolase BDI_1500 115 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 150009677 Common - serine acetyltransferase BDI_3092 192 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 150010324 Common - outer membrane protein OmpA family protein BDI_3758 144 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150009856 Pathogen - hypothetical protein BDI_3272 3 None None None 150010421 Pathogen - hypothetical protein BDI_3861 2 None None None 150008849 Pathogen - hypothetical protein BDI_2239 2 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008448 Pathogen - hypothetical protein BDI_1830 1 None None None 150010264 Common - putative regulatory protein BDI_3693 8 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 150008319 Common - putative NTP pyrophosphohydrolase BDI_1688 18 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 150007815 Common - hypothetical protein BDI_1173 15 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 150007655 Common - hypothetical protein BDI_1010 3 COG4640 COG4640, Predicted membrane protein Function unknown 150008223 Pathogen - hypothetical protein BDI_1589 2 None None None 150009588 Common - site-specific DNA methylase BDI_3001 110 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 150010069 Common rpsI 30S ribosomal protein S9 BDI_3488 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 150007787 Common - putative protein involved in capsular polysaccharide biosynthesis BDI_1145 16 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 150009283 Common - hypothetical protein BDI_2685 36 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 150009580 Pathogen - hypothetical protein BDI_2993 1 None None None 150009385 Pathogen - hypothetical protein BDI_2793 2 None None None 150009840 Common - putative transposase BDI_3256 24 None None None 150008157 Common - hypothetical protein BDI_1523 6 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 150010194 Common - hypothetical protein BDI_3617 23 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 150007424 Common - ferredoxin-type protein BDI_0775 89 COG0348 NapH, Polyferredoxin Energy production and conversion 150009194 Pathogen - hypothetical protein BDI_2596 3 None None None 150007048 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0391 6 None None None 150007141 Common - putative alkaline phosphatase BDI_0485 17 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007759 Common - hypothetical protein BDI_1117 12 None None None 150008263 Common - hypothetical protein BDI_1632 27 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 150009001 Common - FKBP-type peptidyl-prolyl cis-transisomerase BDI_2397 30 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 150006805 Pathogen - hypothetical protein BDI_0131 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150009895 Common - putative integrase BDI_3312 66 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008006 Common - hypothetical protein BDI_1369 23 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 150006695 Common - N-acetylmuramoyl-L-alanine amidase, putative BDI_0021 14 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 150008481 Common - putative thiogalactoside transacetylase BDI_1867 197 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150007725 Common - hypothetical protein BDI_1080 5 None None None 150010174 Pathogen - hypothetical protein BDI_3597 1 None None None 150009548 Common - hypothetical protein BDI_2961 84 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 150007431 Common - xylulose kinase BDI_0782 173 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 150008539 Pathogen - hypothetical protein BDI_1925 3 None None None 150007819 Common - putative Na+-driven multidrug efflux pump BDI_1177 159 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150009224 Common - hypothetical protein BDI_2626 3 COG3629 DnrI, DNA-binding transcriptional activator of the SARP family Signal transduction mechanisms 150007191 Common - putative two-component system sensor histidine kinase BDI_0536 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150009501 Common - putative integral membrane protein BDI_2914 52 COG1808 COG1808, Predicted membrane protein Function unknown 150009094 Common - hypothetical protein BDI_2495 37 COG3176 COG3176, Putative hemolysin General function prediction only 150008670 Common - putative methylglyoxyl synthase BDI_2060 88 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism 150009421 Common - extracellular protease, putative BDI_2829 11 None None None 150007352 Common - putative two-component system sensor histidine kinase BDI_0703 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150008802 Common - lipoyl synthase BDI_2192 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 150008852 Pathogen - hypothetical protein BDI_2242 2 None None None 150009680 Common - phosphoribosylamine--glycine ligase BDI_3095 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 150008598 Common - histone macro-H2A1-related protein BDI_1984 114 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 150009055 Common - hypothetical protein BDI_2456 10 None None None 150008165 Common - putative metal-dependent hydrolase BDI_1531 74 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 150010403 Common - putative TonB-dependent outer membrane protein BDI_3840 118 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010371 Common - hypothetical protein BDI_3808 161 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 150008934 Common - hypothetical protein BDI_2330 6 None None None 150008806 Common - hypothetical protein BDI_2196 3 COG0657 Aes, Esterase/lipase Lipid metabolism 150008921 Common - putative anti-sigma factor BDI_2317 40 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150010357 Common mazG nucleoside triphosphate pyrophosphohydrolase BDI_3792 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 150009684 Common - acetylornithine deacetylase BDI_3099 184 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 150008877 Common rplA 50S ribosomal protein L1 BDI_2267 246 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 150009159 Pathogen - hypothetical protein BDI_2561 1 None None None 150007013 Common - choloylglycine hydrolase BDI_0350 53 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 150009006 Common - ABC transporter ATP-binding protein BDI_2402 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 150010016 Common - putative cation efflux system protein BDI_3435 181 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150010291 Common - hypothetical protein BDI_3721 11 COG2259 COG2259, Predicted membrane protein Function unknown 150007009 Common - outer membrane efflux protein BDI_0346 102 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007578 Common - cytoplasmic alpha-amylase BDI_0931 122 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 150006789 Common - two-component system sensor histidine kinase BDI_0115 224 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 150008438 Common - putative transcriptional regulator BDI_1820 191 COG0583 LysR, Transcriptional regulator Transcription 150008510 Common - hypothetical protein BDI_1896 178 COG1496 COG1496, Uncharacterized conserved protein Function unknown 150008653 Common - hypothetical protein BDI_2043 66 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 150008881 Common - elongation factor Tu BDI_2272 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 150008320 Common - conserved hypothetical protein, putative probable secreted glycosylhydrolase BDI_1689 3 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 150008731 Common - uncharacterized Fe-S center protein, putative ferredoxin BDI_2121 45 COG2768 COG2768, Uncharacterized Fe-S center protein General function prediction only 150007533 Pathogen - hypothetical protein BDI_0886 1 None None None 150007967 Common - D-threonine aldolase, metal-activated pyridoxal enzyme BDI_1328 61 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 150008151 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1517 11 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150006974 Common - amidophosphoribosyltransferase precursor BDI_0310 227 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 150010518 Common - arylsulfatase precursor BDI_3965 74 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007873 Common - hypothetical protein BDI_1233 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 150008864 Common - transcriptional regulator BDI_2254 81 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 150009708 Common - putative transmembrane protein BDI_3123 45 COG2311 COG2311, Predicted membrane protein Function unknown 150008826 Common - glycosyltransferase family 4 BDI_2216 18 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007976 Common - transcriptional regulator BDI_1338 80 COG1309 AcrR, Transcriptional regulator Transcription 150006922 Pathogen - hypothetical protein BDI_0258 2 None None None 150007695 Common - putative NAD dependent epimerase/dehydratase BDI_1050 234 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150007114 Common - thiol peroxidase BDI_0458 88 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150009892 Common - putative methyltransferase BDI_3309 96 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 150009307 Pathogen - hypothetical protein BDI_2709 3 None None None 150009399 Common - putative oxidoreductase BDI_2807 111 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 150008475 Common - putative dephospho-CoA kinase BDI_1861 177 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 150009775 Pathogen - hypothetical protein BDI_3190 1 None None None 150008610 Common - ribonuclease G BDI_1996 187 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 150008328 Common - hypothetical protein BDI_1697 7 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 150008451 Common - outer membrane assembly protein BDI_1835 5 None None None 150009297 Common - ATP-dependent DNA helicase RecG BDI_2699 220 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 150007337 Common - 2-oxoisovalerate dehydrogenase beta subunit BDI_0687 190 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 150009751 Common - glycosyltransferase family 4 BDI_3166 186 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150006687 Common - integrase BDI_0013 8 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150009975 Common - hypothetical protein BDI_3394 24 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150007915 Common - putative glycosyltransferase BDI_1276 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150009918 Common - hypothetical protein BDI_3335 32 COG3533 COG3533, Uncharacterized protein conserved in bacteria Function unknown 150006933 Pathogen - hypothetical protein BDI_0269 2 None None None 150009346 Common - putative long-chain-fatty-acid-CoA ligase BDI_2754 213 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 150006892 Common - hypothetical protein BDI_0228 28 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 150007081 Common - hypothetical protein BDI_0424 3 None None None 150007068 Pathogen - hypothetical protein BDI_0411 1 None None None 150007582 Common - putative RNA-binding protein rbpA BDI_0935 66 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 150007314 Common - putative exported Tpr repeat-family protein BDI_0659 124 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 150009214 Common - two-component system sensor histidine kinase BDI_2616 209 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007474 Pathogen - ATP synthase subunit E BDI_0825 5 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 150007842 Common - endonuclease IV BDI_1200 99 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 150009701 Common - putative outer membrane protein probably involved in nutrient binding BDI_3116 23 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150006834 Common - hypothetical protein BDI_0165 10 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008577 Pathogen - hypothetical protein BDI_1963 1 None None None 150006984 Common - glutamine synthetase BDI_0320 96 COG3968 COG3968, Uncharacterized protein related to glutamine synthetase General function prediction only 150007000 Common - putative cation efflux transporter BDI_0336 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150009885 Common - 3-dehydroquinate dehydratase BDI_3301 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 150009558 Common - polyprenyl synthetase BDI_2971 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 150007270 Common - long-chain-fatty-acid-CoA ligase, putative BDI_0615 213 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 150006865 Pathogen - hypothetical protein BDI_0197 1 None None None 150009066 Common - glycoside hydrolase family 28 BDI_2467 23 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 150008709 Common - putative methyltransferase BDI_2099 9 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 150008260 Common - hypothetical protein BDI_1629 36 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 150008425 Common - hydrogenase maturation factor BDI_1807 112 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 150009353 Pathogen - hypothetical protein BDI_2761 3 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 150008837 Pathogen - hypothetical protein BDI_2227 1 None None None 150008088 Common recA recombinase A BDI_1452 243 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 150008357 Common - putative two-component regulator sensor kinase BDI_1731 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009540 Common - putative hemolysin BDI_2953 7 None None None 150008177 Common ppnK inorganic polyphosphate/ATP-NAD kinase BDI_1543 241 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 150010334 Common - O-acetylhomoserine (thiol)-lyase BDI_3768 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 150008423 Common - hydrogenase accessory protein HypB BDI_1805 148 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 150006818 Common - glycerol-3-phosphate dehydrogenase BDI_0149 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 150006686 Common - putative two-component system response regulator BDI_0012 111 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007486 Common - putative hemolysins BDI_0837 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 150007107 Common - putative signal peptidase BDI_0450 72 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150010149 Common - putative outer membrane transport/efflux protein BDI_3572 120 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150010479 Pathogen - hypothetical protein BDI_3920 1 None None None 150007637 Common - putative transcriptional regulator BDI_0990 25 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008210 Common - glycosyltransferase family 4 BDI_1576 74 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008099 Common - UDP-glucose 6-dehydrogenase BDI_1463 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 150008853 Common - transposase BDI_2243 90 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150006901 Common - N-acetylglucosamine-6-phosphate deacetylase BDI_0237 122 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 150009186 Common - elongation factor P BDI_2588 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 150008609 Common - DNA-binding protein HU BDI_1995 188 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150008293 Pathogen - hypothetical protein BDI_1662 1 None None None 150007457 Common - two-component system response regulator BDI_0808 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009313 Pathogen - hypothetical protein BDI_2715 2 None None None 150009480 Common - hypothetical protein BDI_2893 24 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 150009901 Common - putative acetyltransferase BDI_3318 14 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150009749 Common - hypothetical protein BDI_3164 3 None None None 150008604 Common - siderophore biosynthesis regulatory protein BDI_1990 8 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 150010485 Common - glycoside hydrolase family 15, candidate alpha-glycosidase BDI_3926 74 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 150008309 Common - putative anti-sigma factor BDI_1678 39 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150008338 Common - putative metal-binding protein BDI_1710 13 COG5561 COG5561, Predicted metal-binding protein Function unknown 150009634 Common - hypothetical protein BDI_3048 4 None None None 150009851 Common - conserved hypothetical outer membrane protein BDI_3267 6 None None None 150010433 Pathogen - hypothetical protein BDI_3873 1 None None None 150007438 Common - cation efflux system protein BDI_0789 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007198 Common - dihydroorotate dehydrogenase 2 BDI_0543 101 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 150010218 Common - putative aminotransferase BDI_3641 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150009251 Pathogen - hypothetical protein BDI_2653 1 None None None 150008764 Common - hypothetical protein BDI_2154 2 None None None 150009562 Pathogen - hypothetical protein BDI_2975 1 None None None 150009576 Common - putative transcriptional regulator BDI_2989 95 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150007173 Common - hypothetical protein BDI_0518 6 None None None 150007359 Common - hypothetical protein BDI_0710 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 150009170 Common - putative translation initiation factor SUI1 BDI_2572 17 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 150009761 Common - hypothetical protein BDI_3176 4 None None None 150010208 Common - 3-oxoacyl-[acyl-carrier-protein] synthase III BDI_3631 206 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 150008517 Common - hypothetical protein BDI_1903 9 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150009377 Common - glycosyltransferase family 10 BDI_2785 12 None None None 150007228 Common - putative reductase BDI_0573 47 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 150007442 Common - putative Na+/sulfate symporter BDI_0793 150 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 150008063 Common - glycoside hydrolase family 20 BDI_1426 23 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150006954 Common - putative N-acetylmuramoyl-L-alanine amidase BDI_0290 18 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 150007148 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0493 7 None None None 150009795 Common - TPR-repeat-containing protein BDI_3211 3 None None None 150007321 Common - glycoside hydrolase family 92 BDI_0666 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150010031 Common - putative integral membrane protein BDI_3450 57 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 150006929 Common - ATP synthase delta chain BDI_0265 140 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 150008995 Common - hypothetical protein BDI_2391 3 None None None 150006705 Common - O-antigen repeat unit transporter BDI_0031 97 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008563 Common - two-component system response regulator BDI_1949 219 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150009182 Common ksgA dimethyladenosine transferase BDI_2584 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 150008300 Common - ribose 5-phosphate isomerase B BDI_1669 127 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 150007711 Common - precorrin-6Y C5,15-methyltransferase, decarboxylating BDI_1066 100 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 150009337 Common - putative outer membrane protein probably involved in nutrient binding BDI_2744 6 None None None 150009046 Common - conserved hypothetical protein, putative tubulin-like protein BDI_2447 35 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 150009229 Common - 3-deoxy-manno-octulosonate cytidylyltransferase BDI_2631 138 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 150009845 Pathogen - hypothetical protein BDI_3261 2 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150010216 Common - hypothetical protein BDI_3639 11 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 150010517 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3964 6 None None None 150008744 Common - methyltransferase BDI_2134 94 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 150009430 Common - putative phenylacetic acid degradation protein BDI_2838 29 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 150009616 Pathogen - hypothetical protein BDI_3029 1 None None None 150008350 Common - DNA-3-methyladenine glycosylase I BDI_1724 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 150008037 Common - hypothetical protein BDI_1400 54 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 150008355 Common - ATP-dependent exonuclease sbcC BDI_1729 179 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 150010062 Common - putative TonB dependent outer membrane protein BDI_3481 17 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009131 Common - tyrosine type site-specific recombinase BDI_2532 22 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008897 Pathogen - hypothetical protein BDI_2292 3 None None None 150009327 Pathogen - hypothetical protein BDI_2729 2 None None None 150010182 Common - hypothetical protein BDI_3605 12 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150009759 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase BDI_3174 181 COG0756 Dut, dUTPase Nucleotide transport and metabolism 150008862 Common - delta-1-pyrroline-5-carboxylate dehydrogenase BDI_2252 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 150009361 Common - GTP-binding protein TypA BDI_2769 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 150009452 Pathogen - hypothetical protein BDI_2865 2 None None None 150009660 Common - hypothetical protein BDI_3075 17 COG3592 COG3592, Uncharacterized conserved protein Function unknown 150006721 Common - putative acetyltransferase BDI_0047 70 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 150007153 Common - integrase BDI_0498 161 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150009085 Common murC UDP-N-acetylmuramate--L-alanine ligase BDI_2486 210 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 150008419 Common - indolepyruvate oxidoreductase subunit IorA BDI_1800 112 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 150009300 Common xseA exodeoxyribonuclease VII large subunit BDI_2702 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 150010134 Common - putative outer membrane protein BDI_3557 98 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 150007052 Common - putative ferredoxin-type protein BDI_0395 83 COG0348 NapH, Polyferredoxin Energy production and conversion 150010040 Pathogen - hypothetical protein BDI_3459 2 None None None 150009393 Pathogen - hypothetical protein BDI_2801 1 None None None 150007946 Common - putative outer membrane protein probably involved in nutrient binding BDI_1307 4 None None None 150009150 Common - O-acetylhomoserine (thiol)-lyase BDI_2552 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 150009138 Pathogen - hypothetical protein BDI_2539 1 None None None 150009174 Common - hypothetical protein BDI_2576 9 None None None 150010054 Common - putative TonB-dependent receptor BDI_3473 14 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007878 Common - putative histidinol-phosphatase BDI_1238 36 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 150010211 Common - putative undecaprenyl-phosphate glycosyl-1-phosphate transferase BDI_3634 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150009721 Common - putative integrase/transposase BDI_3136 26 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007275 Common - non-specific DNA-binding protein Dps BDI_0620 128 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 150010116 Common - cysteine desulfurase activator complex subunit SufB BDI_3536 185 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 150007615 Common - histidinol-phosphate aminotransferase BDI_0968 236 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 150007932 Common - glycoside hydrolase family 73 BDI_1293 20 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 150007834 Common - hypothetical protein BDI_1192 61 COG4105 ComL, DNA uptake lipoprotein General function prediction only 150007102 Common - hypothetical protein BDI_0445 9 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 150009359 Common - hypothetical protein BDI_2767 4 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 150010449 Common - conserved protein found in conjugate transposon BDI_3889 5 None None None 150008416 Common - putative ferredoxin, putative iron-sulfur protein BDI_1797 34 COG2221 DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits Energy production and conversion 150009536 Common - hypothetical protein BDI_2949 17 COG3055 COG3055, Uncharacterized protein conserved in bacteria Function unknown 150008376 Common - hypothetical protein BDI_1750 57 COG2985 COG2985, Predicted permease General function prediction only 150007700 Common - two-component system sensor histidine kinase BDI_1055 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007299 Common - putative Na+/sulphate transporter BDI_0644 166 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 150007332 Common - putative transport protein BDI_0682 18 None None None 150007495 Pathogen - hypothetical protein BDI_0846 1 None None None 150007028 Common - putative metalloendopeptidase BDI_0371 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 150006825 Common gmk guanylate kinase BDI_0156 212 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 150007454 Common - two-component system response regulator BDI_0805 111 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150009834 Pathogen - hypothetical protein BDI_3250 1 None None None 150007887 Common - hypothetical protein BDI_1247 12 None None None 150007216 Common - putative O-antigen polymerase BDI_0561 5 None None None 150008051 Common - putative O-antigen transporter BDI_1414 43 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150009071 Common - putative dehydrogenase BDI_2472 17 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008048 Common - glycosyltransferase family 2 BDI_1411 204 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009714 Common - glycoside hydrolase family 97 BDI_3129 18 None None None 150007566 Common - putative modulator of DNA gyrase BDI_0919 169 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 150008378 Common - glycoside hydrolase family 43, candidate beta-glycosidase BDI_1752 39 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 150007940 Common - dihydroorotase BDI_1301 210 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 150010100 Pathogen - hypothetical protein BDI_3520 1 None None None 150008014 Common - prephenate dehydratase BDI_1377 210 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 150009624 Common - TPR-repeat-containing protein BDI_3038 31 None None None 150010083 Common - DNA primase BDI_3503 6 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 150007466 Common - conserved exported hypothetical protein BDI_0817 39 COG3858 COG3858, Predicted glycosyl hydrolase General function prediction only 150009728 Common - glycoside hydrolase family 92 BDI_3143 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150007661 Common - putative precorrin-2 C20-methyltransferase BDI_1016 87 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 150007360 Common - malate dehydrogenase BDI_0711 203 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 150008403 Common - multidrug efflux pump BexA BDI_1779 127 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150008460 Common - glycosyltransferase family 2 BDI_1844 213 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150008962 Common infA translation initiation factor IF-1 BDI_2358 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 150007345 Common - DNA polymerase III epsilon chain BDI_0695 139 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 150010430 Pathogen - hypothetical protein BDI_3870 2 None None None 150008164 Common - tetratricopeptide repeat family protein BDI_1530 28 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 150007353 Common - outer membrane protein BDI_0704 122 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150009667 Common - putative metal ABC transporter, ATP-binding protein BDI_3082 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 150009484 Common - putative zinc protease YmxG BDI_2897 192 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 150008932 Common - two-component system response regulator BDI_2328 110 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150006897 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0233 6 None None None 150010057 Common - putative NADH pyrophosphatase BDI_3476 99 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 150008402 Common - putative DNA polymerase III, delta subunit BDI_1778 202 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 150008581 Common - hypothetical protein BDI_1967 9 None None None 150009498 Common - putative secreted peptidase BDI_2911 24 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 150008880 Common - putative preprotein translocase SecE subunit BDI_2270 3 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 150007499 Pathogen - hypothetical protein BDI_0851 1 None None None 150007948 Common - outer membrane efflux protein BDI_1309 131 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008395 Common - hypothetical protein BDI_1769 144 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 150010365 Pathogen - hypothetical protein BDI_3802 4 None None None 150009867 Common - excinuclease ABC subunit A BDI_3283 242 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 150010032 Common - hypothetical protein BDI_3451 26 COG4104 COG4104, Uncharacterized conserved protein Function unknown 150008789 Common - glycoside hydrolase family 43, candidate beta-glycosidase BDI_2179 44 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 150009726 Common - hypothetical protein BDI_3141 27 COG2152 COG2152, Predicted glycosylase Carbohydrate transport and metabolism 150009079 Common - two-component response regulator BDI_2480 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009368 Common - glycosyltransferase family 4 BDI_2776 68 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150010086 Pathogen - hypothetical protein BDI_3506 1 None None None 150009146 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2548 5 None None None 150010289 Common - acetyltransferase BDI_3719 52 COG0456 RimI, Acetyltransferases General function prediction only 150007219 Pathogen - hypothetical protein BDI_0564 1 None None None 150006826 Common - hypothetical protein BDI_0157 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 150010462 Common - transposase BDI_3902 74 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 150008128 Common - acriflavine resistance protein A precursor BDI_1493 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150010106 Common - hypothetical protein BDI_3526 4 None None None 150008557 Common - hypothetical protein BDI_1943 4 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 150008179 Common - pyridoxal phosphate biosynthetic protein PdxJ BDI_1545 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 150009448 Common - putative ECF-type sigma factor BDI_2856 121 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007918 Pathogen - hypothetical protein BDI_1279 2 None None None 150007614 Common - histidinol dehydrogenase BDI_0967 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 150010354 Common - RNA polymerase ECF-type sigma factor BDI_3789 153 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150006736 Common - hypothetical protein BDI_0062 5 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150008069 Common - glycosyltransferase family 2 BDI_1433 166 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 150009172 Common - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase BDI_2574 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 150009446 Pathogen - hypothetical protein BDI_2854 2 None None None 150008426 Common - hydrogenase expression/formation protein; HypC BDI_1808 85 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 150007298 Common - hypothetical protein BDI_0643 24 COG4866 COG4866, Uncharacterized conserved protein Function unknown 150007292 Common - two-component system sensor histidine kinase BDI_0637 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008044 Pathogen - hypothetical protein BDI_1407 1 None None None 150008964 Common secY preprotein translocase subunit SecY BDI_2360 227 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 150007626 Common - transcriptional regulator BDI_0979 94 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150010327 Common - hypothetical protein BDI_3761 48 COG2954 COG2954, Uncharacterized protein conserved in bacteria Function unknown 150007343 Common rpmG 50S ribosomal protein L33 BDI_0693 45 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 150008847 Pathogen - hypothetical protein BDI_2237 1 None None None 150010043 Pathogen - hypothetical protein BDI_3462 2 None None None 150008815 Common - putative colanic acid biosynthesis acetyltransferase WcaF BDI_2205 124 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150010070 Common rpsB 30S ribosomal protein S2 BDI_3489 218 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 150009629 Pathogen - hypothetical protein BDI_3043 1 None None None 150010096 Common - site-specific recombinase BDI_3516 164 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150009564 Pathogen - hypothetical protein BDI_2977 1 None None None 150009491 Common - putative serine protease BDI_2904 14 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 150007882 Pathogen - PDZ domain protein BDI_1242 2 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150010439 Common - hypothetical protein BDI_3879 7 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 150008896 Common - putative transcriptional regulator BDI_2291 52 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150009184 Common - hypothetical protein BDI_2586 36 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 150009319 Common - hypothetical protein BDI_2721 5 None None None 150007507 Common - hypothetical protein BDI_0859 7 None None None 150006951 Common - glyceraldehyde 3-phosphate dehydrogenase BDI_0287 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 150007175 Common - putative inner membrane protein translocase component YidC BDI_0520 214 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 150008384 Common - putative Sec-independent protein translocase BDI_1758 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 150009208 Common - choline-sulfatase BDI_2610 93 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150010509 Common - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, putative BDI_3956 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 150008747 Common - hypothetical protein BDI_2137 28 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 150009972 Common - two-component system sensor histidine kinase/response regulator, hybrid BDI_3391 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009195 Common - transcriptional regulator BDI_2597 120 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 150009884 Common - tyrosine type site-specific recombinase BDI_3300 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008863 Common - hypothetical protein BDI_2253 27 COG3506 COG3506, Uncharacterized conserved protein Function unknown 150007937 Common - two-component system sensor histidine kinase, with a response regulator receiver domain BDI_1298 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008030 Common - ketoisovalerate oxidoreductase subunit vorA BDI_1393 71 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 150008743 Common - hypothetical protein BDI_2133 7 COG3655 COG3655, Predicted transcriptional regulator Transcription 150010215 Common - conserved hypothetical protein, putative acyl carrier protein BDI_3638 3 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150007008 Common - hypothetical protein BDI_0344 25 None None None 150008292 Common - putative FtsX-related transmembrane transport protein BDI_1661 12 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150007649 Common - hypothetical protein BDI_1004 24 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 150008424 Common - hydrogenase expression/formation protein HupA BDI_1806 91 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 150008780 Common - putative zinc-type alcohol dehydrogenase BDI_2170 207 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 150007597 Common - conserved hypothetical protein BatC BDI_0950 41 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 150009639 Pathogen - hypothetical protein BDI_3053 3 None None None 150007577 Common - glycoside hydrolase family 13, candidate alpha-glucosidase BDI_0930 165 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 150007044 Pathogen - hypothetical protein BDI_0387 2 None None None 150007376 Pathogen - hypothetical protein BDI_0727 3 None None None 150008597 Pathogen - hypothetical protein BDI_1983 2 None None None 150008763 Pathogen - hypothetical protein BDI_2153 2 None None None 150008254 Common - putative outer membrane protein probably involved in nutrient binding BDI_1623 6 None None None 150007604 Common - hypothetical protein BDI_0957 84 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 150007060 Common - hypothetical protein BDI_0403 39 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 150009362 Common rpsO 30S ribosomal protein S15 BDI_2770 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 150006838 Common - Maf-like protein BDI_0169 189 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 150008141 Common - hypothetical protein BDI_1507 3 None None None 150009896 Pathogen - hypothetical protein BDI_3313 1 None None None 150007767 Common - Na(+)-translocating NADH-quinone reductase subunit A BDI_1125 39 COG1726 NqrA, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA Energy production and conversion 150009848 Pathogen - hypothetical protein BDI_3264 2 None None None 150007872 Common - hypothetical protein BDI_1232 5 None None None 150009655 Common - hypothetical protein BDI_3070 4 None None None 150007588 Common - recognition particle-docking protein FtsY BDI_0941 246 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 150010444 Common - conserved protein found in conjugate transposon BDI_3884 5 None None None 150006959 Pathogen - hypothetical protein BDI_0295 2 None None None 150007490 Common pyrB aspartate carbamoyltransferase catalytic subunit BDI_0841 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 150007880 Common - putative chaperone protein BDI_1240 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 150007286 Common - aldolase BDI_0631 65 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 150009413 Common - two-component system response regulator BDI_2821 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009453 Pathogen - hypothetical protein BDI_2866 1 None None None 150009730 Common - acetyl esterase BDI_3145 82 COG0627 COG0627, Predicted esterase General function prediction only 150007446 Common - hypothetical protein BDI_0797 14 None None None 150009133 Pathogen - hypothetical protein BDI_2534 1 None None None 150007475 Pathogen - hypothetical protein BDI_0826 4 None None None 150008663 Common - tRNA nucleotidyltransferase BDI_2053 212 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 150010190 Pathogen - hypothetical protein BDI_3613 3 None None None 150008980 Common rpsS 30S ribosomal protein S19 BDI_2376 242 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 150009354 Pathogen - hypothetical protein BDI_2762 2 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 150007416 Common - choloylglycine hydrolase BDI_0767 54 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 150008861 Common - proline dehydrogenase BDI_2251 44 COG0506 PutA, Proline dehydrogenase Amino acid transport and metabolism 150010232 Common - putative phosphoesterase BDI_3658 90 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 150007512 Pathogen - hypothetical protein BDI_0864 1 None None None 150006884 Common - putative signal recognition protein BDI_0218 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 150007552 Pathogen - hypothetical protein BDI_0905 1 None None None 150009706 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_3121 69 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150007786 Pathogen - hypothetical protein BDI_1144 1 None None None 150008768 Pathogen - hypothetical protein BDI_2158 2 None None None 150007665 Common - transcriptional regulator BDI_1020 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008928 Common - putative anti-sigma factor BDI_2324 38 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150008887 Pathogen - hypothetical protein BDI_2282 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150010467 Common - hypothetical protein BDI_3907 85 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 150009119 Common - putative metal-dependent hydrolase BDI_2520 77 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 150010315 Common thyA thymidylate synthase BDI_3749 143 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 150010290 Common - cAMP-binding domain-containing regulatory protein BDI_3720 26 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150008349 Common - 2-dehydropantoate 2-reductase BDI_1723 100 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 150009996 Common - hypothetical protein BDI_3415 3 None None None 150010050 Common - two-component system response regulator BDI_3469 156 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150009587 Common - hypothetical protein BDI_3000 6 None None None 150007697 Common - cation efflux system protein CzcB BDI_1052 141 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007519 Pathogen - hypothetical protein BDI_0871 1 None None None 150010519 Common - N-acetylgalactosamine 6-sulfatase BDI_3966 90 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150008202 Common - hypothetical protein BDI_1568 74 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 150008274 Common - hypothetical protein BDI_1643 103 COG1738 COG1738, Uncharacterized conserved protein Function unknown 150008729 Common - putative oxidoreductase BDI_2119 109 COG0778 NfnB, Nitroreductase Energy production and conversion 150007207 Pathogen - hypothetical protein BDI_0552 1 None None None 150009750 Pathogen - hypothetical protein BDI_3165 2 None None None 150008244 Common - hypothetical protein BDI_1610 17 COG1475 Spo0J, Predicted transcriptional regulators Transcription 150010379 Common - putative nucleotide-diphosphate sugar epimerase BDI_3816 183 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150009022 Common - putative ABC transporter permease protein BDI_2418 233 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 150008629 Common - imidazole-4-carboxamide isomerase BDI_2017 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 150009921 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3338 26 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007439 Common - AcrB/AcrD/AcrF family transporter BDI_0790 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150008343 Common - putative regulatory protein BDI_1717 23 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150009854 Common - hypothetical protein BDI_3270 5 None None None 150006725 Common - putative long-chain-fatty-acid-CoA ligase BDI_0051 216 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 150010022 Pathogen - hypothetical protein BDI_3441 1 None None None 150009688 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_3103 74 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150009438 Common - hypothetical protein BDI_2846 7 None None None 150009705 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_3120 76 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150007428 Common - putative K+ uptake system protein BDI_0779 97 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 150009764 Common - glycoside hydrolase family 63 BDI_3179 13 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 150010168 Common - TPR-domain containing protein BDI_3591 71 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 150007720 Common - isocitrate dehydrogenase BDI_1075 220 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 150007315 Common - threonyl-tRNA synthetase BDI_0660 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150008876 Common rplJ 50S ribosomal protein L10 BDI_2266 14 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 150007537 Pathogen - hypothetical protein BDI_0890 1 None None None 150008175 Common - hypothetical protein BDI_1541 4 None None None 150007977 Common - glycoside hydrolase family 43, candidate beta-glycosidase BDI_1339 42 COG3507 XynB, Beta-xylosidase Carbohydrate transport and metabolism 150009830 Pathogen - hypothetical protein BDI_3246 2 None None None 150009259 Common - gluconolactonase precursor BDI_2661 80 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 150006764 Common - inositol-5-monophosphate dehydrogenase BDI_0090 234 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 150006989 Common - glutamate synthase, small subunit BDI_0325 199 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 150009281 Common - pyruvate carboxylase subunit B BDI_2683 145 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 150009023 Common - putative ABC transporter permease protein BDI_2419 232 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 150008002 Common - two-component system sensor histidine kinase BDI_1364 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009225 Common - hypothetical protein BDI_2627 13 COG0456 RimI, Acetyltransferases General function prediction only 150008326 Common - ribulose-phosphate 3-epimerase BDI_1695 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 150010370 Common - mannose-1-phosphate guanyltransferase BDI_3807 201 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 150008158 Common - hypothetical protein BDI_1524 6 None None None 150010154 Common - ABC transporter, ATP-binding protein BDI_3577 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 150006741 Common - acetylornithine aminotransferase BDI_0067 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 150009800 Common - hypothetical protein BDI_3216 48 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 150006815 Common - putative beta-phosphoglucomutase BDI_0146 146 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 150009093 Common mraW S-adenosyl-methyltransferase MraW BDI_2494 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 150007101 Pathogen - hypothetical protein BDI_0444 2 None None None 150009052 Common - hypothetical protein BDI_2453 2 None None None 150009292 Pathogen - hypothetical protein BDI_2694 3 None None None 150008153 Common - diphosphate--fructose-6-phosphate 1-phosphotransferase BDI_1519 142 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 150008016 Common - putative phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase BDI_1379 159 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 150006785 Common - cytochrome c biogenesis protein ccsA BDI_0111 95 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 150008291 Common - putative protease I BDI_1660 5 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150009005 Common - conserved hypothetical protein, putative ABC transporter permease protein BDI_2401 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 150009948 Common - UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase BDI_3366 207 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 150007905 Common - integrase BDI_1265 19 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008050 Common - putative cholinephosphotransferase BDI_1413 10 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 150010067 Pathogen - hypothetical protein BDI_3486 3 None None None 150008268 Common - ABC transporter, ATP-binding protein BDI_1637 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 150010123 Common - aminotransferase BDI_3543 240 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 150009863 Pathogen - hypothetical protein BDI_3279 2 None None None 150006784 Common - hypothetical protein BDI_0110 6 None None None 150007455 Common - putative two-component system sensor histidine kinase BDI_0806 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007698 Common - cation efflux system protein CzcA BDI_1053 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 150009770 Common - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase BDI_3185 124 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 150008009 Common - putative RNA binding protein with S1 RNA-binding domain BDI_1372 212 COG2183 Tex, Transcriptional accessory protein Transcription 150009008 Common - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine BDI_2404 201 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 150007154 Common - hypothetical protein BDI_0499 5 None None None 150009252 Common - hypothetical protein BDI_2654 20 COG5464 COG5464, Uncharacterized conserved protein Function unknown 150007651 Pathogen - hypothetical protein BDI_1006 1 None None None 150009779 Common - hypothetical protein BDI_3195 20 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150009716 Common - RNA polymerase ECF-type sigma factor BDI_3131 147 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150010199 Pathogen - hypothetical protein BDI_3622 1 None None None 150009765 Common - alkaline phosphatase BDI_3180 82 COG1785 PhoA, Alkaline phosphatase Inorganic ion transport and metabolism 150010395 Common - capsular polysaccharide biosynthesis protein Cps4K BDI_3832 23 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150008720 Common - hypothetical protein BDI_2110 5 None None None 150010487 Pathogen - hypothetical protein BDI_3928 1 None None None 150010401 Common - putative carbamoylphosphate synthase large subunit, short form BDI_3838 42 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 150007706 Common - thiamine phosphate pyrophosphorylase BDI_1061 16 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 150008986 Common - elongation factor G BDI_2382 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 150007404 Pathogen - hypothetical protein BDI_0755 1 None None None 150007849 Pathogen - hypothetical protein BDI_1209 3 None None None 150007019 Common - ribonuclease BN BDI_0357 65 COG1295 Rbn, Predicted membrane protein Function unknown 150008771 Common - hypothetical protein BDI_2161 6 None None None 150009268 Common - hypothetical protein BDI_2670 44 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 150009287 Common - putative two-component system sensor histidine kinase BDI_2689 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150008532 Common - dethiobiotin synthetase BDI_1918 157 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 150009547 Common - hypothetical protein BDI_2960 39 COG2715 SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. General function prediction only 150007269 Pathogen - putative pyrogenic exotoxin B BDI_0614 4 COG5043 MRS6, Vacuolar protein sorting-associated protein Intracellular trafficking and secretion 150007670 Common - hypothetical protein BDI_1025 7 None None None 150007082 Common - polysaccharide export outer membrane protein BDI_0425 68 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150008220 Common - conserved hypothetical protein, putative nucleotidyltransferase BDI_1586 27 COG2361 COG2361, Uncharacterized conserved protein Function unknown 150008413 Pathogen - hypothetical protein BDI_1794 1 None None None 150008439 Common - hypothetical protein BDI_1821 4 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150007807 Common - putative outer membrane receptor protein BDI_1165 5 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007782 Common - hypothetical protein BDI_1140 16 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 150008911 Common - D-tagatose 3-epimerase BDI_2307 54 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150009041 Common - hypothetical protein BDI_2437 6 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 150007003 Common - putative transcriptional regulator BDI_0339 51 COG1309 AcrR, Transcriptional regulator Transcription 150010163 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3586 6 COG4412 COG4412, Uncharacterized protein conserved in bacteria Function unknown 150010179 Common - DNA-binding protein HU-beta BDI_3602 211 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150010480 Common - mucin-desulfating sulfatase MdsA BDI_3921 94 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007531 Pathogen - hypothetical protein BDI_0884 1 None None None 150006915 Common - putative acetyltransferase BDI_0251 5 None None None 150007779 Common - naphthoate synthase BDI_1137 179 COG0447 MenB, Dihydroxynaphthoic acid synthase Coenzyme metabolism 150007672 Common - hypothetical protein BDI_1027 13 None None None 150008561 Common - hypothetical protein BDI_1947 14 None None None 150008824 Common - glycosyltransferase family 2 BDI_2214 215 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009518 Common - glycosyltransferase family 2, will be annotated when complete BDI_2931 159 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009471 Pathogen - hypothetical protein BDI_2884 1 None None None 150009773 Common - putative TIM-barrel enzyme BDI_3188 207 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 150007453 Common - putative two-component system sensor protein histidine kinase BDI_0804 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150009120 Common - glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase BDI_2521 60 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150010429 Pathogen - hypothetical protein BDI_3869 2 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 150006743 Common - argininosuccinate synthase BDI_0069 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 150009405 Common - putative polysaccharide deacetylase BDI_2813 47 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 150007324 Common - DNA helicase BDI_0669 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 150008445 Common - hypothetical protein BDI_1827 13 None None None 150007524 Common - putative DNA methylase BDI_0877 11 COG1475 Spo0J, Predicted transcriptional regulators Transcription 150006857 Common - oxidoreductase, short chain dehydrogenase/reductase family BDI_0189 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150007560 Common - putative Xaa-Pro dipeptidase BDI_0913 194 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 150008489 Common - hypothetical protein BDI_1875 63 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 150009746 Common - hypothetical protein BDI_3161 4 None None None 150009397 Common - phosphoenolpyruvate carboxykinase BDI_2805 96 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 150008944 Pathogen - hypothetical protein BDI_2340 2 None None None 150008690 Common - putative aminotransferase BDI_2080 231 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 150009126 Common - hypothetical protein BDI_2527 25 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010318 Pathogen - hypothetical protein BDI_3752 1 None None None 150009129 Pathogen - hypothetical protein BDI_2530 1 None None None 150010136 Common - hypothetical protein BDI_3559 16 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 150010413 Common - transcriptional regulator BDI_3853 85 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008045 Common - acetyltransferase BDI_1408 105 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150007090 Common - NAD/NADP octopine/nopaline dehydrogenase BDI_0433 26 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 150007824 Common - exonuclease, RecB family BDI_1182 49 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 150009642 Common - hypothetical protein BDI_3056 185 COG0759 COG0759, Uncharacterized conserved protein Function unknown 150010422 Pathogen - hypothetical protein BDI_3862 2 None None None 150008331 Common - conserved hypothetical protein, putative nitroreductase BDI_1700 24 None None None 150008835 Common - putative LPS biosynthesis related glycosyltransferase BDI_2225 190 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150007501 Pathogen - hypothetical protein BDI_0853 1 COG1110 COG1110, Reverse gyrase DNA replication, recombination, and repair 150008281 Common fumC fumarate hydratase BDI_1650 237 COG0114 FumC, Fumarase Energy production and conversion 150010206 Common - putative acyl carrier protein BDI_3629 6 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150007401 Common - hypothetical protein BDI_0752 2 None None None 150008918 Common - arylsulfatase A BDI_2314 88 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150009793 Common sdhA succinate dehydrogenase flavoprotein subunit BDI_3209 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 150009943 Common - putative sodium/proton antiporter BDI_3361 208 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 150008086 Common - saccharopine dehydrogenase BDI_1450 58 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 150009112 Common - UDP-N-acetylmuramate-alanine ligase BDI_2513 136 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 150010497 Pathogen - putative transposase BDI_3938 2 None None None 150008607 Common - single-stranded binding protein BDI_1993 208 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 150008989 Pathogen - hypothetical protein BDI_2385 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150007856 Common - hypothetical protein BDI_1216 4 None None None 150007895 Common - hypothetical protein BDI_1255 3 None None None 150007780 Common - putative muconate cycloisomerase BDI_1138 90 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 150008521 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1907 30 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150008288 Common - ribokinase BDI_1657 222 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150007488 Common - flavoredoxin BDI_0839 72 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 150010176 Common - DNA topoisomerase I BDI_3599 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 150009811 Common - glycosyltransferase family 2 BDI_3227 213 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150010020 Common - signal peptidase I BDI_3439 139 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 150007920 Common - glycosyltransferase family 4 BDI_1281 185 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009698 Common - conserved hypothetical protein with endonuclease/exonuclease/phosphatase family domain BDI_3113 24 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150008777 Pathogen - hypothetical protein BDI_2167 3 None None None 150008905 Pathogen - hypothetical protein BDI_2300 1 None None None 150007850 Common - RNA binding protein BDI_1210 63 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 150009411 Common - glycosyltransferase family 9 BDI_2819 60 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 150008680 Common - acyl-[acyl-carrier-protein] thioesterase BDI_2070 22 COG3884 FatA, Acyl-ACP thioesterase Lipid metabolism 150006808 Common - putative cAMP-binding protein BDI_0139 11 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150008098 Common - hypothetical protein BDI_1462 2 COG1409 Icc, Predicted phosphohydrolases General function prediction only 150009731 Common - 3-phosphoshikimate 1-carboxyvinyltransferase BDI_3146 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 150007929 Common - DNA primase BDI_1290 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 150006868 Common - putative DNA replication and repair protein BDI_0202 155 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 150009937 Common - putative ABC transporter ATP-binding protein BDI_3354 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 150010237 Common - hypothetical protein BDI_3663 6 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009815 Common - glycosyltransferase family 4 BDI_3231 221 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008182 Common - TonB-like protein BDI_1548 6 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 150010349 Common - hypothetical protein BDI_3783 41 COG2738 COG2738, Predicted Zn-dependent protease General function prediction only 150007166 Common - electron transport complex protein RnfA BDI_0511 76 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 150008055 Common - putative LPS biosynthesis related glycosyltransferase BDI_1418 120 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150009917 Common - hypothetical protein BDI_3334 29 COG3533 COG3533, Uncharacterized protein conserved in bacteria Function unknown 150007756 Common - hypothetical protein BDI_1114 6 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 150009871 Pathogen - hypothetical protein BDI_3287 1 None None None 150010036 Common - putative anti-sigma factor BDI_3455 44 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007027 Pathogen - hypothetical protein BDI_0370 1 None None None 150010342 Pathogen - hypothetical protein BDI_3776 2 None None None 150008196 Common - putative transcriptional regulator BDI_1562 30 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150009857 Pathogen - hypothetical protein BDI_3273 3 None None None 150006962 Pathogen - hypothetical protein BDI_0298 2 None None None 150010115 Common - hypothetical protein BDI_3535 5 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 150009020 Pathogen - hypothetical protein BDI_2416 1 None None None 150009468 Common - ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis BDI_2881 185 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 150008078 Common - Fe-S oxidoreductase BDI_1442 58 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 150010309 Common - hypothetical protein BDI_3743 6 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150006718 Common - conserved hypothetical protein, putative glycosyltransferase BDI_0044 3 None None None 150007514 Common - putative prophage Lp2 protein 26 BDI_0866 7 None None None 150008808 Common - putative transmembrane calcium-transporting ATPase BDI_2198 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 150008641 Pathogen - hypothetical protein BDI_2029 2 None None None 150007621 Common - transcriptional regulator BDI_0974 61 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008061 Common - hypothetical protein BDI_1424 4 COG3828 COG3828, Uncharacterized protein conserved in bacteria Function unknown 150010387 Common - putative flippase BDI_3824 9 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150010506 Common - hypothetical protein BDI_3952 6 None None None 150009183 Common - magnesium transporter BDI_2585 175 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 150009958 Common frr ribosome recycling factor BDI_3376 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 150007550 Pathogen - hypothetical protein BDI_0903 2 None None None 150007039 Common - AcrB/AcrD family multidrug resistance protein BDI_0382 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150006928 Common - F0F1 ATP synthase subunit alpha BDI_0264 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 150008606 Common - hemolysin-related protein BDI_1992 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 150009503 Common - polysaccharide biosynthesis protein BDI_2916 34 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008123 Common - peptidyl-prolyl cis-trans isomerase, cyclophilin-type BDI_1488 103 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 150008259 Common - glucokinase BDI_1628 85 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150006948 Common - transcriptional regulator BDI_0284 153 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150008891 Common - hypothetical protein BDI_2286 10 None None None 150010337 Common - glutamine synthetase BDI_3771 98 COG3968 COG3968, Uncharacterized protein related to glutamine synthetase General function prediction only 150008110 Common - hypothetical protein BDI_1474 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 150008952 Common - hypothetical protein BDI_2348 4 None None None 150006703 Common - hypothetical protein BDI_0029 8 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 150008615 Common - putative amidohydrolase BDI_2001 193 COG0388 COG0388, Predicted amidohydrolase General function prediction only 150007718 Common - aspartate aminotransferase BDI_1073 82 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 150009822 Common - UDP-glucose 6-dehydrogenase BDI_3238 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 150010001 Common - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein BDI_3420 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 150008453 Common - glycosyltransferase BDI_1837 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150010077 Common - two-component system sensor histidine kinase/response regulator, hybrid BDI_3497 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150007097 Common - putative CPS repeating unit transporter BDI_0440 86 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008234 Common - integrase BDI_1600 99 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150010049 Common - putative permease BDI_3468 15 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150009104 Pathogen - hypothetical protein BDI_2505 3 None None None 150009645 Common - glycoside hydrolase family 16, candidate beta-glycosidase BDI_3060 50 COG2273 SKN1, Beta-glucanase/Beta-glucan synthetase Carbohydrate transport and metabolism 150008846 Pathogen - hypothetical protein BDI_2236 1 None None None 150007939 Common - hypothetical protein BDI_1300 176 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 150009387 Common - putative lipoprotein BDI_2795 3 None None None 150008119 Common - two-component system sensor kinase/response regulator, hybrid BDI_1484 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009930 Common - DNA topoisomerase IV subunit B BDI_3347 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 150008369 Common - putative chloride channel protein BDI_1743 158 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 150007058 Common - thioredoxin reductase BDI_0401 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 150010251 Pathogen - hypothetical protein BDI_3677 2 None None None 150010241 Common - hypothetical protein BDI_3667 32 COG0778 NfnB, Nitroreductase Energy production and conversion 150007687 Common - NADP-reducing hydrogenase B chain - Desulfovibrio fructosovorans gi|466364|gb|AAA87055.1| potential NAD-reducing hydrogenase subunit BDI_1042 17 COG3411 COG3411, Ferredoxin Energy production and conversion 150007544 Pathogen - hypothetical protein BDI_0897 1 None None None 150007302 Common - putative glucose-6-phosphate 1-dehydrogenase BDI_0647 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 150007957 Common - glycoside hydrolase family 78 BDI_1318 23 None None None 150010265 Common - putative protoporphyrinogen oxidase BDI_3694 220 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 150007688 Common - NADH:ubiquinone oxidoreductase subunit BDI_1043 181 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 150010453 Pathogen - hypothetical protein BDI_3893 2 None None None 150007398 Common - hypothetical protein BDI_0749 4 None None None 150009428 Common - putative ABC transport system, membrane protein BDI_2836 28 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150009837 Pathogen - Type II restriction enzyme EcoRI BDI_3253 2 None None None 150006747 Common - DNA mismatch repair protein MutS BDI_0073 195 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 150007137 Common - membrane-associated zinc metalloprotease BDI_0481 207 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 150008318 Common - putative DNA topoisomerase BDI_1687 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 150008576 Common - putative ABC transporter permease component BDI_1962 46 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150009521 Pathogen - hypothetical protein BDI_2934 2 None None None 150008107 Common - putative lipopolysaccharide biosynthsis protein BDI_1471 15 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 150009964 Common - hypothetical protein BDI_3382 232 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 150010158 Common - hypothetical protein BDI_3581 11 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150008618 Common - glycosyltransferase family 3, candidate alpha-glycosyltransferase BDI_2004 9 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150006767 Common - 5-nitroimidazole antibiotic resistance protein BDI_0093 19 COG3467 COG3467, Predicted flavin-nucleotide-binding protein General function prediction only 150009678 Common - putative N6-adenine-specific DNA methylase BDI_3093 133 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 150007339 Common - lipoate-protein ligase A BDI_0689 74 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 150009162 Common - hypothetical protein BDI_2564 38 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 150009204 Pathogen - hypothetical protein BDI_2606 1 None None None 150007440 Common - outer membrane protein, putative BDI_0791 61 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150010364 Pathogen - hypothetical protein BDI_3799 3 None None None 150010446 Pathogen - hypothetical protein BDI_3886 2 None None None 150008733 Common - transposase in mobilizable transposon, tnpA protein BDI_2123 4 None None None 150007950 Common - periplasmic linker protein, putative multidrug resistance protein BDI_1311 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150008279 Common - spermidine/putrescine transport ATP-binding protein BDI_1648 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 150006770 Common - glycine betaine transport ATP-binding protein BDI_0096 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 150007125 Common gidB glucose-inhibited division protein B BDI_0469 196 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 150008674 Common - 2-isopropylmalate synthase BDI_2064 211 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 150007702 Common - putative dehydrogenase BDI_1057 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 150008832 Common - capsular polysaccharide biosythesis protein, putative BDI_2222 40 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 150008871 Common - putative transcriptional regulator BDI_2261 114 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150009758 Common - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase BDI_3173 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 150008754 Common - hypothetical protein BDI_2144 73 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 150008143 Pathogen - hypothetical protein BDI_1509 2 None None None 150009782 Pathogen - hypothetical protein BDI_3198 2 None None None 150008428 Common - hydrogenase expression/formation protein HypE BDI_1810 160 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 150009928 Common - conserved hypothetical protein, possible regucalcin-like protein BDI_3345 75 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 150010091 Common - hypothetical protein BDI_3511 67 COG0701 COG0701, Predicted permeases General function prediction only 150007473 Common - putative acetyltransferase, GNAT family BDI_0824 22 COG0456 RimI, Acetyltransferases General function prediction only 150008794 Common - hexapeptide transferase family protein, putative acetyltransferase BDI_2184 224 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 150010287 Common - uracil-DNA glycosylase BDI_3716 130 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 150009010 Common - tRNA pseudouridine synthase B BDI_2406 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 150009474 Pathogen - hypothetical protein BDI_2887 3 None None None 150009206 Common - hypothetical protein BDI_2608 54 COG3943 COG3943, Virulence protein General function prediction only 150008219 Common - putative flippase BDI_1585 17 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008998 Common - ATP-dependent DNA helicase recQ BDI_2394 231 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 150009082 Common - cell division protein FtsZ BDI_2483 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 150007744 Pathogen - hypothetical protein BDI_1102 1 None None None 150009549 Common - hypothetical protein BDI_2962 14 None None None 150008501 Common - putative nucleotidyltransferase family protein BDI_1887 36 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 150009390 Common - hypothetical protein BDI_2798 4 None None None 150010457 Common - hypothetical protein BDI_3897 4 COG2968 COG2968, Uncharacterized conserved protein Function unknown 150010186 Common - integrase BDI_3609 140 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007067 Pathogen - hypothetical protein BDI_0410 1 None None None 150008469 Common - phosphatidate cytidylyltransferase BDI_1855 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 150009534 Common - glycoside hydrolase family 20 BDI_2947 53 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150010511 Common - putative pseudouridine synthase family 1 protein BDI_3958 47 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 150007945 Common - possible anti-sigma factor BDI_1306 32 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150008634 Common - diaminopimelate decarboxylase BDI_2022 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 150007869 Pathogen - hypothetical protein BDI_1229 4 None None None 150008971 Common rpsN 30S ribosomal protein S14 BDI_2367 211 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 150006831 Common - hypothetical protein BDI_0162 9 None None None 150007391 Common - integrase BDI_0742 84 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150006797 Common - hypothetical protein BDI_0123 3 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 150008515 Common - putative secreted glycosylhydrolase BDI_1901 13 None None None 150007072 Common - putative 5-methyltetrahydrofolate--homocysteine methyltransferase BDI_0415 176 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 150007225 Common - 3-oxoacyl-[acyl-carrier-protein] reductase BDI_0570 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150010277 Common - hypothetical protein BDI_3706 4 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 150008939 Common - putative anti-sigma factor BDI_2335 36 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007369 Pathogen - hypothetical protein BDI_0720 2 None None None 150009983 Common - hypothetical protein BDI_3402 4 None None None 150010046 Common - putative outer membrane protein probably involved in nutrient binding BDI_3465 7 None None None 150007104 Common - glycoside hydrolase family 36, candidate alpha-glycosidase BDI_0447 45 COG3345 GalA, Alpha-galactosidase Carbohydrate transport and metabolism 150008024 Common - Mn2+ and Fe2+ transport protein BDI_1387 114 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 150008363 Common - putative cation efflux pump BDI_1737 161 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150010141 Common - putative phosphohydrolase BDI_3564 10 COG1409 Icc, Predicted phosphohydrolases General function prediction only 150009594 Common - hypothetical protein BDI_3007 15 None None None 150009349 Common - histidine triad (HIT) family protein BDI_2757 223 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 150007237 Common - oxidoreductase, putative glycolate oxidase BDI_0582 145 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 150008483 Common - hypothetical protein BDI_1869 10 None None None 150008302 Common - conserved hypothetical protein with endonuclease/exonuclease/phosphatase family domain BDI_1671 27 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150008528 Common - adenosylmethionine--8-amino-7-oxononanoate transaminase BDI_1914 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 150009222 Common - hypothetical protein BDI_2624 4 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150008007 Common - putative ABC transporter BDI_1370 242 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 150006875 Common - glycosyltransferase family 4 BDI_0209 200 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007186 Common - hypothetical protein BDI_0531 10 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 150007563 Common - putative cation transport ATPase BDI_0916 2 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 150007128 Pathogen - hypothetical protein BDI_0472 2 None None None 150007994 Pathogen - hypothetical protein BDI_1356 1 None None None 150007116 Common - putative DNA-damage-inducible protein F BDI_0460 167 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150007465 Common - hypothetical protein BDI_0816 4 None None None 150009032 Common - glycoside hydrolase family 3, candidate beta-glucosidase BDI_2428 118 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150006908 Common - glycoside hydrolase family 38 BDI_0244 28 COG0383 AMS1, Alpha-mannosidase Carbohydrate transport and metabolism 150009988 Common - anaerobic ribonucleoside triphosphate reductase BDI_3407 114 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 150007628 Common - hypothetical protein BDI_0981 7 None None None 150010248 Common - iron(III) ABC transporter putative permease protein BDI_3674 189 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 150009197 Common - putative translation initiation inhibitor BDI_2599 44 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 150010098 Pathogen - putative lipoprotein BDI_3518 3 None None None 150009261 Common trkA potassium transporter peripheral membrane component BDI_2663 155 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 150010294 Common asnC asparaginyl-tRNA synthetase BDI_3727 228 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 150006976 Common gcvT glycine cleavage system aminomethyltransferase T BDI_0312 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 150009275 Common - hypothetical protein BDI_2677 7 COG2815 COG2815, Uncharacterized protein conserved in bacteria Function unknown 150008341 Common - hypothetical protein BDI_1715 14 None None None 150010018 Common - hypothetical protein BDI_3437 9 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 150007838 Common - putative phosphatase BDI_1196 195 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 150010489 Common - potassium-transporting ATPase subunit A BDI_3930 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 150010437 Pathogen - type I restriction enzyme, M subunit BDI_3877 2 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 150009025 Common - putative transcriptional regulator BDI_2421 185 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 150010119 Common - putative acetyltransferase BDI_3539 29 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 150008869 Common - putative ornithine carbamoyltransferase BDI_2259 229 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 150008894 Common gltX glutamyl-tRNA synthetase BDI_2289 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 150009740 Common - uridine kinase BDI_3155 122 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 150007889 Common - 4-carboxymuconolactone decarboxylase BDI_1249 67 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 150010156 Common - hypothetical protein BDI_3579 5 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150010213 Common - putative lactoylglutathione lyase BDI_3636 41 None None None 150009790 Common - glycosyltransferase family 1, candidate beta-glycosyltransferase BDI_3206 43 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 150009324 Common - putative Tricorn-like protease BDI_2726 146 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150009389 Pathogen - hypothetical protein BDI_2797 1 None None None 150007106 Common - DnaK suppressor protein, putative BDI_0449 73 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 150007828 Common - putative GAF domain-containing protein involved in signal transduction BDI_1186 83 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 150009217 Common rpsA 30S ribosomal protein S1 BDI_2619 217 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 150009799 Common - TonB BDI_3215 14 COG4219 MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component Transcription / Signal transduction mechanisms 150008351 Common - mannose-6-phosphate isomerase BDI_1725 53 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 150007505 Common - putative recombination protein BDI_0857 9 None None None 150007177 Common - 3-deoxy-manno-octulosonate cytidylyltransferase BDI_0522 139 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 150009566 Common - Type III restriction-modification enzyme, helicase subunit BDI_2979 29 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 150007591 Common - putative integration host factor IHF alpha subunit BDI_0944 6 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150008668 Common - TPR domain protein BDI_2058 73 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 150007610 Common - peptidase, M16 family BDI_0963 172 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 150008513 Common - hypoxanthine phosphoribosyltransferase BDI_1899 152 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 150007715 Common - anaerobic cobalt chelatase CbiK BDI_1070 24 COG4822 CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase Coenzyme metabolism 150007437 Common - transcriptional regulator BDI_0788 77 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150010377 Pathogen - putative transcriptional regulator UpxY-like protein BDI_3814 2 COG0250 NusG, Transcription antiterminator Transcription 150007600 Common - putative membrane-associated phospholipid phosphatase BDI_0953 12 None None None 150007619 Common - putative multidrug resistance/siderophore transport related, membrane protein BDI_0972 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150009968 Common - putative secretory protein BDI_3386 3 None None None 150007388 Common - transposase BDI_0739 74 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 150010348 Common - adenylosuccinate synthetase BDI_3782 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 150007042 Pathogen - hypothetical protein BDI_0385 2 None None None 150008741 Common - transposase BDI_2131 74 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 150007294 Common - rteB, two-component system response regulator BDI_0639 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150008858 Pathogen - hypothetical protein BDI_2248 2 None None None 150009637 Common - hypothetical protein BDI_3051 5 None None None 150006957 Pathogen - hypothetical protein BDI_0293 1 None None None 150007212 Common - hypothetical protein BDI_0557 6 COG3594 NolL, Fucose 4-O-acetylase and related acetyltransferases Carbohydrate transport and metabolism 150008252 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1621 12 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008984 Common rplC 50S ribosomal protein L3 BDI_2380 238 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 150007193 Common - putative lipoprotein protein BDI_0538 108 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 150006926 Common - hypothetical protein BDI_0262 152 COG2962 RarD, Predicted permeases General function prediction only 150007769 Common - iron-sulfur cluster-binding protein, putative polyferredoxin BDI_1127 37 COG0348 NapH, Polyferredoxin Energy production and conversion 150009364 Common - acyl-CoA synthetase BDI_2772 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150006992 Common - putative TonB-dependent receptor BDI_0328 35 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010473 Common - 7-cyano-7-deazaguanine reductase BDI_3913 145 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 150008034 Common - ATP-dependent RNA helicase BDI_1397 248 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 150007979 Common - putative transmembrane protein BDI_1341 18 COG4299 COG4299, Uncharacterized protein conserved in bacteria Function unknown 150010411 Common - transposase BDI_3851 40 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007170 Common - electron transport complex, protein RnfC BDI_0515 97 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 150008068 Common - acetyltransferase BDI_1432 93 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150007335 Common - transcriptional regulator BDI_0685 97 COG1846 MarR, Transcriptional regulators Transcription 150007970 Common - H+/gluconate symporter and related permease BDI_1331 78 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 150009254 Common - phosphoglyceromutase BDI_2656 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 150008127 Common - putative aminoglycoside efflux pump BDI_1492 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150009088 Common - UDP-N-acetylmuramoylalanine--D-glutamate ligase BDI_2489 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 150009303 Common - FKBP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor BDI_2705 146 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 150006774 Common - ferritin A BDI_0100 85 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 150009545 Common - hypothetical protein BDI_2958 29 COG4912 COG4912, Predicted DNA alkylation repair enzyme DNA replication, recombination, and repair 150008316 Common - TPR-domain containing protein BDI_1685 13 None None None 150009703 Common - hypothetical protein BDI_3118 2 None None None 150006716 Common - glycosyltransferase family 26 BDI_0042 102 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 150009077 Common - hypothetical protein BDI_2478 13 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008073 Common - hypothetical protein BDI_1437 43 COG2385 SpoIID, Sporulation protein and related proteins Cell division and chromosome partitioning 150009144 Common - hypothetical protein BDI_2546 8 None None None 150007497 Pathogen - hypothetical protein BDI_0848 1 None None None 150008011 Pathogen - hypothetical protein BDI_1374 1 None None None 150009523 Common - arylsulfatase regulator BDI_2936 81 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 150010482 Common - glutamine synthetase I BDI_3923 223 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 150006895 Common - hypothetical protein BDI_0231 7 None None None 150009994 Common - haloacid dehalogenase-like hydrolase BDI_3413 62 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 150006701 Common - putative UDP-glucose-6 dehydrogenase BDI_0027 207 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 150009157 Common - ATPase, ParA family BDI_2559 230 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150007099 Pathogen - hypothetical protein BDI_0442 1 None None None 150007056 Common - FtsK/SpoIIIE family cell division protein BDI_0399 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 150008463 Pathogen - putative transcriptional regulator Updx-like protein BDI_1847 2 None None None 150007631 Common - hypothetical protein BDI_0984 33 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 150009481 Common - hypothetical protein BDI_2894 7 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010460 Pathogen - hypothetical protein BDI_3900 2 None None None 150010221 Common - urocanate hydratase BDI_3644 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 150008042 Pathogen - hypothetical protein BDI_1405 1 None None None 150008966 Common rpmD 50S ribosomal protein L30 BDI_2362 91 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 150010059 Common - putative two-component system response regulator BDI_3478 214 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150009091 Common - penicillin-binding protein BDI_2492 206 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 150009620 Common - L-aspartate oxidase BDI_3033 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 150008035 Common rho transcription termination factor Rho BDI_1398 214 COG1158 Rho, Transcription termination factor Transcription 150006828 Pathogen - hypothetical protein BDI_0159 1 None None None 150006821 Pathogen - hypothetical protein BDI_0152 2 None None None 150008649 Common - hypothetical protein BDI_2037 3 None None None 150009826 Common - putative LPS biosynthesis related glycosyltransferase BDI_3242 187 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 150008444 Common - hypothetical protein BDI_1826 196 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 150007624 Common - glutaminase A BDI_0977 5 None None None 150009743 Pathogen - hypothetical protein BDI_3158 1 None None None 150009859 Common - ThiJ/PfpI family protein BDI_3275 88 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 150007296 Common - putative outer membrane protein BDI_0641 4 None None None 150010172 Common - two-component system sensor histidine kinase BDI_3595 218 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 150009673 Common - 5-nitroimidazole antibiotic resistance protein BDI_3088 35 COG3467 COG3467, Predicted flavin-nucleotide-binding protein General function prediction only 150007051 Pathogen - hypothetical protein BDI_0394 3 None None None 150007790 Common - UDP-N-acetylenolpyruvoylglucosamine reductase BDI_1148 188 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 150008488 Common - ATP-dependent protease BDI_1874 214 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 150009381 Common - putative dehydrogenase BDI_2789 191 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007612 Common - aminopeptidase N BDI_0965 165 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 150009325 Common - putative surface protein BDI_2727 49 COG2431 COG2431, Predicted membrane protein Function unknown 150008004 Common - putative acetohydroxyacid synthase small subunit BDI_1367 38 COG4747 COG4747, ACT domain-containing protein General function prediction only 150010268 Common - hypothetical protein BDI_3697 5 None None None 150007279 Common - putative pteridine-dependent dioxygenase BDI_0624 16 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 150009694 Common - putative anti-sigma factor BDI_3109 39 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150008411 Common - glycoside hydrolase family 30, candidate beta-glycosidase BDI_1787 24 COG5520 COG5520, O-Glycosyl hydrolase Cell envelope biogenesis, outer membrane 150008399 Common - branched-chain amino acid aminotransferase BDI_1775 208 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 150009431 Common - hypothetical protein BDI_2839 6 None None None 150006787 Common - putative transcriptional regulator BDI_0113 47 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150007728 Common - putative succinyl-diaminopimelate desuccinylase BDI_1083 151 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 150006931 Common - putative ATP synthase C subunit BDI_0267 9 None None None 150007911 Common - glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase BDI_1272 56 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150010065 Common - DNA polymerase III alpha subunit BDI_3484 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 150007350 Pathogen - hypothetical protein BDI_0700 1 None None None 150009666 Common - putative zinc ABC transporter zinc-binding protein BDI_3081 160 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 150008828 Common - capsular polysaccharide repeat unit transporter BDI_2218 105 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150009382 Common - putative aminotransferase BDI_2790 191 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150009068 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2469 15 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010104 Common - hypothetical protein BDI_3524 4 None None None 150009530 Common - major facilitator family transporter BDI_2943 164 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 150009294 Common - hypothetical protein BDI_2696 8 COG2259 COG2259, Predicted membrane protein Function unknown 150007983 Common - Fe-S oxidoreductase BDI_1345 97 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 150008049 Common - exopolysaccharide biosynthesis protein, putative galactosyltransferase BDI_1412 20 COG5039 COG5039, Exopolysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 150008162 Common - putative ABC transporter ATP-binding protein BDI_1528 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 150009061 Common - hypothetical protein BDI_2462 14 None None None 150007017 Common - hypothetical protein BDI_0354 5 None None None 150008109 Common - polysaccharide export outer membrane protein BDI_1473 69 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150009012 Common - hypothetical protein BDI_2408 5 None None None 150009035 Common - putative surface antigen BspA BDI_2431 7 None None None 150007260 Common - putative TonB-dependent outer membrane receptor protein BDI_0605 121 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150008324 Common - conserved hypothetical protein, putative exopolyphosphatase-related protein BDI_1693 76 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 150007575 Common - Na+/H+ antiporter BDI_0928 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 150007156 Pathogen - hypothetical protein BDI_0501 1 None None None 150006943 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0279 5 None None None 150009879 Common - hypothetical protein BDI_3295 2 None None None 150006756 Pathogen - hypothetical protein BDI_0082 2 None None None 150008818 Pathogen - hypothetical protein BDI_2208 1 None None None 150007863 Common - endopeptidase Clp ATP-binding chain B BDI_1223 220 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 150009178 Pathogen - hypothetical protein BDI_2580 1 None None None 150009861 Pathogen - hypothetical protein BDI_3277 1 None None None 150006998 Common - putative short-chain dehydrogenase BDI_0334 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 150007381 Pathogen - putative DNA-binding protein BDI_0732 2 None None None 150006776 Common - ADP-ribose pyrophosphatase, MutT family protein BDI_0102 24 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 150010025 Pathogen - hypothetical protein BDI_3444 1 None None None 150007805 Common - hypothetical protein BDI_1163 5 None None None 150009578 Pathogen - hypothetical protein BDI_2991 1 None None None 150007284 Common - hypothetical protein BDI_0629 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 150007434 Common - putative ABC transporter permease BDI_0785 12 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150010398 Common - hypothetical protein BDI_3835 30 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 150009280 Pathogen - putative oxaloacetate decarboxylase gamma chain 1 BDI_2682 2 COG3630 OadG, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit Energy production and conversion 150007810 Pathogen - hypothetical protein BDI_1168 1 None None None 150010500 Common - tetraacyldisaccharide 4'-kinase BDI_3942 129 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 150008229 Common - tyrosine-protein kinase BDI_1595 149 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150009611 Common - hypothetical protein BDI_3024 21 None None None 150007357 Common - tRNA/rRNA methyltransferase BDI_0708 216 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 150007847 Pathogen - hypothetical protein BDI_1207 1 None None None 150006684 Common - beta-hexosaminidase precursor BDI_0010 6 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150007638 Common - two-component sensor histidine kinase BDI_0991 202 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007005 Common - hypothetical protein BDI_0341 14 COG3247 HdeD, Uncharacterized conserved protein Function unknown 150008468 Common - AAA-metalloprotease FtsH, with ATPase domain BDI_1854 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 150009865 Common - transcriptional regulator BDI_3281 22 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150007676 Common - pyruvate phosphate dikinase BDI_1031 234 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 150007267 Pathogen - hypothetical protein BDI_0612 1 None None None 150008169 Common - putative outer membrane protein BDI_1535 78 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150009285 Common - putative glycosylhydrolase BDI_2687 65 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 150008716 Common - UDP-N-acetylglucosamine acyltransferase BDI_2106 172 COG1043 LpxA, Acyl- acyl carrier protein 150008623 Common - hypothetical protein BDI_2009 4 None None None 150010196 Common - hypothetical protein BDI_3619 21 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 150007586 Common - putative helicase BDI_0939 230 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 150007355 Common - component of multidrug efflux system BDI_0706 132 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150008121 Common - alginate O-acetylation protein, putative alginate o-acetyltransferase BDI_1486 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 150006877 Pathogen - putative lipoprotein BDI_0211 3 None None None 150007418 Common - conserved hypothetical protein, putative membrane protein BDI_0769 147 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 150008874 Common rpoB DNA-directed RNA polymerase subunit beta BDI_2264 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 150007784 Common - glycoside hydrolase family 84 BDI_1142 13 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150008645 Common - ABC transporter ATP-binding protein BDI_2033 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 150009210 Common - hypothetical protein BDI_2612 4 None None None 150009647 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3062 32 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150007421 Pathogen - hypothetical protein BDI_0772 2 None None None 150008722 Common - hypothetical protein BDI_2112 53 COG3169 COG3169, Uncharacterized protein conserved in bacteria Function unknown 150010230 Common - putative PfkB family carbohydrate kinase BDI_3656 204 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150007663 Common - iron(III) ABC transporter putative permease protein BDI_1018 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 150007741 Pathogen - hypothetical protein BDI_1099 1 None None None 150007691 Common - hypothetical protein BDI_1046 84 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 150009653 Common - glycoside hydrolase family 3, candidate beta-glucosidase BDI_3068 107 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 150008479 Common - putative formate acetyltransferase BDI_1865 58 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 150007274 Pathogen - hypothetical protein BDI_0619 2 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 150008200 Common - hypothetical protein BDI_1566 21 None None None 150010465 Common - hypothetical protein BDI_3905 25 COG5340 COG5340, Predicted transcriptional regulator Transcription 150007518 Pathogen - hypothetical protein BDI_0870 1 None None None 150009246 Common - cytochrome D ubiquinol oxidase subunit I BDI_2648 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 150007313 Common - pyruvate/oxaloacetate carboxyltransferase BDI_0658 178 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 150007874 Common pheT phenylalanyl-tRNA synthetase subunit beta BDI_1234 242 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 150008665 Pathogen - hypothetical protein BDI_2055 1 None None None 150008242 Common - hypothetical protein BDI_1608 4 None None None 150008710 Common - glycoside hydrolase family 73 BDI_2100 64 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 150008265 Common - putative FtsX-related transmembrane transport protein BDI_1634 21 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150010125 Common rnhB ribonuclease HII BDI_3545 228 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 150009820 Common - putative flippase BDI_3236 18 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150006906 Common - putative outer membrane protein probably involved in nutrient binding BDI_0242 6 None None None 150008248 Common - two-component system sensor histidine kinase, with response regulator receiver domain BDI_1617 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009777 Common - putative thioesterase family protein BDI_3192 26 COG0824 FcbC, Predicted thioesterase General function prediction only 150009554 Common - excinuclease ABC subunit C BDI_2967 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 150007084 Common - aminotransferase family protein BDI_0427 196 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150007734 Common - hypothetical protein BDI_1092 84 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150010112 Common - hypothetical protein BDI_3532 40 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 150009103 Common - ATP-dependent exonuclease V, alpha subunit - helicase superfamily I member BDI_2504 94 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 150008651 Common - transcriptional regulator BDI_2039 58 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008272 Common - hypothetical protein BDI_1641 71 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 150009310 Common - adenine-specific DNA methylase BDI_2712 26 COG1041 COG1041, Predicted DNA modification methylase DNA replication, recombination, and repair 150006987 Pathogen - hypothetical protein BDI_0323 1 None None None 150008833 Common - putative tyrosine-protein kinase ptk BDI_2223 170 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150009568 Pathogen - hypothetical protein BDI_2981 1 None None None 150008927 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2323 11 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150007535 Pathogen - hypothetical protein BDI_0888 1 None None None 150006727 Common - TonB-dependent receptor, putative BDI_0053 8 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009882 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3298 6 None None None 150007146 Common - hypothetical protein BDI_0491 5 None None None 150008209 Common - nucleoside diphosphate kinase BDI_1575 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 150009510 Pathogen - hypothetical protein BDI_2923 2 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 150009561 Common - site-specific recombinase BDI_2974 121 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150010204 Common - lipopolysaccharide biosynthesis protein BDI_3627 15 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 150009999 Common - hypothetical protein BDI_3418 8 COG3391 COG3391, Uncharacterized conserved protein Function unknown 150007318 Common rplT 50S ribosomal protein L20 BDI_0663 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 150010499 Common - putative thiamine-monophosphate kinase BDI_3941 189 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 150009970 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3388 5 None None None 150006806 Common - hypothetical protein BDI_0132 12 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 150008766 Common - hypothetical protein BDI_2156 63 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 150007480 Common - V-type ATPase, subunit K BDI_0831 15 None None None 150010164 Common - putative metal dependent hydrolase BDI_3587 6 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 150006762 Common - putative transcriptional regulator BDI_0088 143 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150010459 Common - hypothetical protein BDI_3899 45 COG1342 COG1342, Predicted DNA-binding proteins General function prediction only 150008959 Common - 30S ribosomal protein S4 BDI_2355 229 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 150007037 Common - AcrA/AcrE family multidrug resistance protein BDI_0380 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150009239 Pathogen - hypothetical protein BDI_2641 1 None None None 150008552 Common - glycoside hydrolase family 51, candidate alpha-L-arabinofuranosidase BDI_1938 29 COG3534 AbfA, Alpha-L-arabinofuranosidase Carbohydrate transport and metabolism 150008752 Common - mobilization protein BDI_2142 14 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 150007168 Common - electron transport complex, protein RnfG BDI_0513 59 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 150009135 Pathogen - hypothetical protein BDI_2536 1 None None None 150007393 Pathogen - hypothetical protein BDI_0744 1 None None None 150009952 Common - acetate kinase BDI_3370 162 COG0282 ackA, Acetate kinase Energy production and conversion 150008541 Pathogen - hypothetical protein BDI_1927 2 None None None 150007144 Common - putative secreted glycosylhydrolase BDI_0489 9 None None None 150009248 Common - hypothetical protein BDI_2650 42 COG2234 Iap, Predicted aminopeptidases General function prediction only 150008194 Common - hypothetical protein BDI_1560 4 None None None 150010095 Pathogen - hypothetical protein BDI_3515 2 None None None 150009817 Common - glycosyltransferase family 4 BDI_3233 199 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008257 Common - glucose/galactose transporter BDI_1626 96 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 150010038 Pathogen - hypothetical protein BDI_3457 2 None None None 150009504 Common ruvB Holliday junction DNA helicase B BDI_2917 232 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 150009465 Common - ROK family transcriptional repressor, with glucokinase domain BDI_2878 163 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150009841 Common - hypothetical protein BDI_3257 3 None None None 150009935 Common - outer membrane efflux protein BDI_3352 125 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150009601 Common - quinolinate synthetase BDI_3014 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 150009873 Pathogen - hypothetical protein BDI_3289 4 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 150010127 Common - leucine aminopeptidase precursor BDI_3547 8 COG2234 Iap, Predicted aminopeptidases General function prediction only 150010490 Common - K+-transporting ATPase B chain BDI_3931 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 150007161 Common - D-3-phosphoglycerate dehydrogenase BDI_0506 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 150009692 Pathogen - hypothetical protein BDI_3107 2 None None None 150008636 Common - putative very-short-patch-repair endonuclease BDI_2024 71 COG3727 Vsr, DNA G:T-mismatch repair endonuclease DNA replication, recombination, and repair 150009813 Common - glycosyltransferase family 2 BDI_3229 103 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007867 Pathogen - hypothetical protein BDI_1227 1 None None None 150007679 Common - putative ABC transporter ATP-binding protein BDI_1034 34 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 150006841 Common - dihydroxyacid dehydratase BDI_0172 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 150009058 Common - putative DNA segregation ATPase FtsK/SpoIIIE-like protein BDI_2459 24 None None None 150010463 Common - hypothetical protein BDI_3903 3 None None None 150006859 Common - putative hemolysin BDI_0191 38 COG3176 COG3176, Putative hemolysin General function prediction only 150009177 Common - hypothetical protein BDI_2579 11 None None None 150010470 Common - hypothetical protein BDI_3910 17 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 150008076 Common - Na+/solute symporter BDI_1440 91 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 150007941 Common - glycosyltransferase family 2, candidate dolichyl-phosphate beta-D-mannosyltransferase BDI_1302 175 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150010321 Pathogen - hypothetical protein BDI_3755 1 None None None 150009512 Pathogen - hypothetical protein BDI_2925 2 None None None 150008950 Common - transcriptional regulator BDI_2346 17 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150008591 Common - anaerobic C4-dicarboxylate transporter BDI_1977 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 150006860 Common - transcriptional regulator BDI_0192 169 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 150007030 Common - TRAP-type C4-dicarboxylate transport system, periplasmic component BDI_0373 111 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 150007411 Common - hypothetical protein BDI_0762 7 None None None 150008600 Common - phosphate starvation-inducible protein PhoH BDI_1986 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 150009343 Pathogen - hypothetical protein BDI_2750 1 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 150007529 Common - hypothetical protein BDI_0882 25 COG5499 COG5499, Predicted transcription regulator containing HTH domain Transcription 150007402 Common - hypothetical protein BDI_0753 5 None None None 150008132 Common - 3-oxoacyl-[acyl-carrier-protein] synthase III BDI_1497 218 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 150008096 Pathogen - hypothetical protein BDI_1460 1 None None None 150010028 Common - hypothetical protein BDI_3447 32 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 150009658 Common - putative transporter BDI_3073 80 COG1284 COG1284, Uncharacterized conserved protein Function unknown 150009234 Common - glycosyltransferase family 19, candidate lipid-alpha-disaccharide synthase BDI_2636 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 150009807 Pathogen - hypothetical protein BDI_3223 1 None None None 150008613 Common - putative two-component regulator sensor kinase BDI_1999 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150009433 Pathogen - hypothetical protein BDI_2841 1 None None None 150009915 Common - hypothetical protein BDI_3332 9 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 150008112 Common - conserved protein, with a conserved TPR domain BDI_1476 28 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 150006801 Common - putative aminotransferase BDI_0127 190 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150010339 Common - hypothetical protein BDI_3773 130 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 150006852 Common - peptidyl-prolyl cis-trans isomerase BDI_0184 110 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 150006848 Common - putative outer membrane protein BDI_0180 7 None None None 150008943 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2339 27 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009478 Common - hypothetical protein BDI_2891 26 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 150010263 Common - putative amidophosphoribosyl-transferase BDI_3692 153 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 150010296 Pathogen - hypothetical protein BDI_3729 7 COG0456 RimI, Acetyltransferases General function prediction only 150010376 Common - transposase BDI_3813 74 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 150009108 Common - thiamine biosynthesis lipoprotein ApbE BDI_2509 134 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 150007024 Common - putative exported sulfatase BDI_0362 91 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007570 Common - glutamate/gamma-aminobutyrate anti-porter BDI_0923 149 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 150008298 Common - hypothetical protein BDI_1667 90 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 150010424 Pathogen - hypothetical protein BDI_3864 2 None None None 150008534 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1920 14 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150009110 Common - putative dTDP-4-dehydrorhamnose reductase BDI_2511 172 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 150009941 Common - D-alanyl-D-alanine carboxypeptidase BDI_3358 99 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 150007093 Common - putative capsule biosynthesis protein BDI_0436 58 COG2843 PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Cell envelope biogenesis, outer membrane 150008631 Common - phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase BDI_2019 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 150009014 Common - putative beta-agarase precursor BDI_2410 11 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 150010003 Pathogen - hypothetical protein BDI_3422 1 None None None 150010011 Common - hypothetical protein BDI_3430 5 None None None 150010138 Pathogen - hypothetical protein BDI_3561 1 None None None 150009710 Common - putative anti-sigma factor BDI_3125 33 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150009124 Common - phosphoribosylformylglycinamidine synthase BDI_2525 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 150006729 Common - transcriptional regulator BDI_0055 17 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150006691 Common - polysaccharide export protein, BexD/CtrA/VexA family BDI_0017 77 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150007341 Common - nitroreductase BDI_0691 28 COG3560 FMR2, Predicted oxidoreductase related to nitroreductase General function prediction only 150009585 Common - DNA mismatch repair protein BDI_2998 201 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 150007865 Pathogen - hypothetical protein BDI_1225 2 None None None 150010143 Common - prolipoprotein diacylglyceryl transferase BDI_3566 207 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 150007450 Common - putative dihydrodipicolinate synthase BDI_0801 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 150010362 Common - hypothetical protein BDI_3797 31 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150008782 Common - putative flavoredoxin BDI_2172 31 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 150009532 Common - putative outer membrane protein probably involved in nutrient binding BDI_2945 6 None None None 150010308 Pathogen - putative transmembrane protein BDI_3742 2 None None None 150007110 Common - putative surface membrane protein BDI_0453 17 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 150009725 Common - glycoside hydrolase family 92 BDI_3140 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150009378 Pathogen - hypothetical protein BDI_2786 2 None None None 150008138 Common - hypothetical protein BDI_1504 41 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150009926 Common - putative ATPase/GTPase BDI_3343 203 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 150006790 Common - hypothetical protein BDI_0116 15 None None None 150007858 Pathogen - hypothetical protein BDI_1218 2 None None None 150007643 Pathogen - hypothetical protein BDI_0998 1 None None None 150009494 Common - putative transcriptional regulator BDI_2907 14 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150009080 Common - carbon starvation protein A BDI_2481 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 150010089 Common - putative permease BDI_3509 113 COG0701 COG0701, Predicted permeases General function prediction only 150010243 Pathogen - hypothetical protein BDI_3669 2 None None None 150008018 Common - putative transmembrane cation efflux pump BDI_1381 103 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150008978 Common rpsC 30S ribosomal protein S3 BDI_2374 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 150008371 Common - conserved hypothetical protein, putative translation factor BDI_1745 241 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 150010381 Common - hypothetical protein BDI_3818 11 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 150006866 Common - putative 6,7-dimethyl-8-ribityllumazine synthase BDI_0200 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 150008503 Common - ABC transporter, ATP-binding protein BDI_1889 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 150009263 Pathogen - hypothetical protein BDI_2665 1 None None None 150007801 Common - putative anti-sigma factor BDI_1159 37 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150009592 Common - hypothetical protein BDI_3005 16 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 150009981 Common - sugar phosphate isomerase/epimerase BDI_3400 31 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150010184 Pathogen - hypothetical protein BDI_3607 2 None None None 150007245 Common - anthranilate synthase component II BDI_0590 233 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 150009403 Pathogen - hypothetical protein BDI_2811 4 None None None 150007771 Common - cation efflux system protein BDI_1129 208 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 150007266 Common - hypothetical protein BDI_0611 7 None None None 150007252 Common - hypothetical protein BDI_0597 76 COG3189 COG3189, Uncharacterized conserved protein Function unknown 150008844 Pathogen - hypothetical protein BDI_2234 2 None None None 150010513 Pathogen - hypothetical protein BDI_3960 1 None None None 150007746 Pathogen - hypothetical protein BDI_1104 1 None None None 150010285 Common - hypothetical protein BDI_3714 18 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 150008362 Common - outer membrane efflux protein oprM precursor BDI_1736 142 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150010524 Common - hypothetical protein BDI_3971 26 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 150008841 Common - mobilization protein BmgA BDI_2231 25 None None None 150007922 Common - hypothetical protein BDI_1283 4 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008173 Common - putative two-component system sensor histidine kinase BDI_1539 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007776 Common - haloacid dehalogenase-like hydrolase BDI_1134 161 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 150007195 Common - hypothetical protein BDI_0540 4 None None None 150009142 Common - putative peptidase BDI_2544 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 150007074 Common - putative outer membrane protein probably involved in nutrient binding BDI_0417 7 None None None 150010352 Common groES co-chaperonin GroES BDI_3786 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 150007845 Common - superoxide dismutase BDI_1203 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 150007259 Common - transcriptional regulator, putative nickel responsive regulator BDI_0604 63 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 150007463 Common - cobyrinic acid a,c-diamide synthase BDI_0814 136 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 150008217 Pathogen - hypothetical protein BDI_1583 1 None None None 150008215 Common - conserved hypothetical protein, putative glycosyltransferase group 1 BDI_1581 8 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150006791 Common - large conductance mechanosensitive channel protein BDI_0117 143 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 150007227 Common - putative dehydratase BDI_0572 171 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150009098 Pathogen - hypothetical protein BDI_2499 2 None None None 150007231 Common - hypothetical protein BDI_0576 17 None None None 150008022 Common - two-component system response regulator BDI_1385 182 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 150008973 Common rplX 50S ribosomal protein L24 BDI_2369 212 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 150006817 Common pgi glucose-6-phosphate isomerase BDI_0148 199 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 150008408 Common - putative copper/silver resistance-related transport membrane protein BDI_1784 173 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 150009030 Common - putative heme biosynthesis protein BDI_2426 107 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 150009893 Common - putative acetyltransferase BDI_3310 36 COG0456 RimI, Acetyltransferases General function prediction only 150008105 Common - glycosyltransferase family 4 BDI_1469 192 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150010129 Common - glutamine amidotransferase, class II/dipeptidase BDI_3549 173 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 150008692 Common - chorismate synthase BDI_2082 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 150008442 Common - hypothetical protein BDI_1824 76 COG1259 COG1259, Uncharacterized conserved protein Function unknown 150008550 Common truA tRNA pseudouridine synthase A BDI_1936 233 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 150009191 Common - hypothetical protein BDI_2593 3 None None None 150010170 Common - two-component system sensor histidine kinase BDI_3593 196 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 150006960 Common - integrase BDI_0296 119 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150008367 Common - hypothetical protein BDI_1741 37 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 150008583 Common - ABC transporter permease BDI_1969 5 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150007996 Pathogen - putative transcriptional regulator UpxY-like protein BDI_1358 2 COG0250 NusG, Transcription antiterminator Transcription 150008622 Common - transcriptional regulator BDI_2008 100 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008486 Common - putative dehydrogenase BDI_1872 14 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007574 Pathogen - putative Na+/H+ exchange protein BDI_0927 3 None None None 150008993 Common - hypothetical protein BDI_2389 7 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 150008347 Common - hydroxylamine reductase BDI_1721 75 COG1151 COG1151, 6Fe-6S prismane cluster-containing protein Energy production and conversion 150007184 Common - lipoate-protein ligase B BDI_0529 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 150007478 Common - V-type ATP synthase subunit D BDI_0829 9 COG1394 NtpD, Archaeal/vacuolar-type H+-ATPase subunit D Energy production and conversion 150009552 Common - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA BDI_2965 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 150010380 Pathogen - hypothetical protein BDI_3817 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150008429 Common - putative uptake hydrogenase small subunit precursor BDI_1811 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 150008930 Pathogen - hypothetical protein BDI_2326 1 None None None 150007132 Common - hypothetical protein BDI_0476 6 None None None 150007014 Common - uncharacterized Fe-S center protein, putative ferredoxin BDI_0351 28 COG2768 COG2768, Uncharacterized Fe-S center protein General function prediction only 150007309 Common - glycosyltransferase BDI_0654 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150007561 Common - hypothetical protein BDI_0914 28 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 150008706 Common - hypothetical protein BDI_2096 132 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 150008886 Pathogen - hypothetical protein BDI_2281 1 None None None 150007471 Common - putative sugar transporter BDI_0822 90 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 150008969 Common rplF 50S ribosomal protein L6 BDI_2365 238 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 150007139 Common - alanine dehydrogenase BDI_0483 165 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 150008232 Pathogen - hypothetical protein BDI_1598 2 None None None 150010253 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3679 8 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150007685 Common - hypothetical protein BDI_1040 9 None None None 150009528 Common - probable N-acetylneuraminate lyase BDI_2941 186 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 150007961 Common - L-rhamnose isomerase BDI_1322 23 COG4806 RhaA, L-rhamnose isomerase Carbohydrate transport and metabolism 150010330 Common - coproporphyrinogen III oxidase BDI_3764 216 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 150009784 Common - putative dehydrogenase BDI_3200 111 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008735 Common - mobilizable transposon, tnpC protein BDI_2125 4 None None None 150008499 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase BDI_1885 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 150008830 Common - hypothetical protein BDI_2220 4 None None None 150009371 Common - ATP-dependent DNA helicase BDI_2779 69 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 150008304 Common - glycoside hydrolase family 76 BDI_1673 11 COG4833 COG4833, Predicted glycosyl hydrolase Carbohydrate transport and metabolism 150008336 Common - putative ABC transporter ATP-binding protein BDI_1708 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 150006913 Common - putative exonuclease BDI_0249 34 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 150006937 Pathogen - hypothetical protein BDI_0273 1 None None None 150007956 Common - glycoside hydrolase family 78 BDI_1317 16 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 150009220 Common - hypothetical protein BDI_2622 60 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150008574 Common - putative ABC transporter permease component BDI_1960 24 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150007300 Common - putative pyridine nucleotide-disulfide oxidoreductase BDI_0645 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 150009219 Common - phosphoglycolate phosphatase BDI_2621 187 COG0546 Gph, Predicted phosphatases General function prediction only 150006765 Common - hypothetical protein BDI_0091 146 COG1741 COG1741, Pirin-related protein General function prediction only 150007364 Common - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase BDI_0715 181 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 150008792 Common - conserved hypothetical protein, putative membrane protein BDI_2182 182 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150007121 Common - putative permease BDI_0465 67 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 150009418 Common - phosphoribosylglycinamide formyltransferase BDI_2826 218 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 150007558 Common - transposase BDI_0911 5 None None None 150007795 Common - hypothetical protein BDI_1153 16 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 150009651 Common - hypothetical protein BDI_3066 22 COG5368 COG5368, Uncharacterized protein conserved in bacteria Function unknown 150009835 Pathogen - hypothetical protein BDI_3251 1 None None None 150009905 Common - hypothetical protein BDI_3322 6 None None None 150007602 Common - putative universal stress protein UspA BDI_0955 39 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 150009756 Common - glycine cleavage system protein H BDI_3171 188 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 150007923 Common - putative polysaccharide biosynthesis protein BDI_1284 100 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150010455 Pathogen - hypothetical protein BDI_3895 2 None None None 150007654 Pathogen - hypothetical protein BDI_1009 1 COG4640 COG4640, Predicted membrane protein Function unknown 150010450 Pathogen - conserved protein found in conjugate transposon BDI_3890 2 None None None 150007333 Common - putative multidrug resistance protein BDI_0683 160 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 150010227 Common - Mrp/Nbp35 family ATP-binding protein BDI_3650 230 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150008498 Common - rod shape-determining protein MreB BDI_1884 227 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 150006738 Common - putative cytochrome c binding protein BDI_0064 4 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150007777 Common - possible isochorismate synthase BDI_1135 196 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150007893 Common - transcriptional regulator BDI_1253 223 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 150009966 Common - putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase BDI_3384 208 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 150010235 Common - two-component system sensor histidine kinase BDI_3661 201 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007322 Common - Mg2+/Co2+ transporter BDI_0667 109 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 150009198 Pathogen - hypothetical protein BDI_2600 2 None None None 150009839 Common - putative transcriptional regulator BDI_3255 12 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 150008679 Common - ketol-acid reductoisomerase BDI_2069 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 150009334 Common - hypothetical protein BDI_2741 28 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150006753 Common - hypothetical protein BDI_0079 11 COG2971 COG2971, Predicted N-acetylglucosamine kinase Carbohydrate transport and metabolism 150008277 Common - putrescine transport system permease protein PotI BDI_1646 217 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 150009733 Common - zinc ABC transporter permease BDI_3148 187 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 150008712 Common prfA peptide chain release factor 1 BDI_2102 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 150009037 Common - hypothetical protein BDI_2433 31 COG3041 COG3041, Uncharacterized protein conserved in bacteria Function unknown 150009169 Common - ATP-dependent helicase BDI_2571 179 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 150008246 Pathogen - hypothetical protein BDI_1612 2 None None None 150008838 Pathogen - hypothetical protein BDI_2228 1 None None None 150009860 Common - putative nitroreductase BDI_3276 49 COG0778 NfnB, Nitroreductase Energy production and conversion 150010166 Common - putative transcriptional repressor BDI_3589 132 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150009312 Common - putative glycosyl hydrolase BDI_2714 5 None None None 150009649 Common - hypothetical protein BDI_3064 22 COG5368 COG5368, Uncharacterized protein conserved in bacteria Function unknown 150008161 Common - putative lipoprotein BDI_1527 20 COG3015 CutF, Uncharacterized lipoprotein NlpE involved in copper resistance Cell envelope biogenesis, outer membrane / Inorganic ion transport and metabolism 150007199 Common - hypothetical protein BDI_0544 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 150007087 Common - 1-aminocyclopropane-1-carboxylate deaminase BDI_0430 70 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 150009602 Common - tRNA/rRNA methyltransferase BDI_3015 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 150009768 Common - putative outer membrane protein probably involved in nutrient binding BDI_3183 13 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150007272 Pathogen - hypothetical protein BDI_0617 1 None None None 150010151 Common - ABC transporter, permease protein, putative BDI_3574 159 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150009543 Common - putative lysine decarboxylase BDI_2956 116 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 150009715 Common - putative lysophospholipase L1 and related esterase BDI_3130 9 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150009065 Common - hypothetical protein BDI_2466 13 None None None 150008283 Common - conserved hypothetical protein, putative GtrA family protein BDI_1652 29 COG2246 COG2246, Predicted membrane protein Function unknown 150008241 Pathogen - hypothetical protein BDI_1607 2 None None None 150006780 Pathogen - hypothetical protein BDI_0106 1 None None None 150006681 Common - hypothetical protein BDI_0007 3 None None None 150008902 Common - putative protein-tyrosine-phosphatase BDI_2297 134 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 150007458 Common - conserved hypothetical protein, putative N-acetylmuramoyl-L-alanine amidase BDI_0809 11 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 150007707 Common - hydroxymethylpyrimidine/phosphomethylpyrimidine kinase BDI_1062 220 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 150009709 Common - RNA polymerase ECF-type sigma factor BDI_3124 15 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007420 Common - hypothetical protein BDI_0771 6 COG1359 COG1359, Uncharacterized conserved protein Function unknown 150008708 Common - cytidine deaminase BDI_2098 109 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 150009215 Common - two-component system sensor histidine kinase BDI_2617 207 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008678 Pathogen - hypothetical protein BDI_2068 1 COG3668 ParE, Plasmid stabilization system protein General function prediction only 150007371 Pathogen - hypothetical protein BDI_0722 2 None None None 150010280 Common - hypothetical protein BDI_3709 51 COG3876 COG3876, Uncharacterized protein conserved in bacteria Function unknown 150010229 Common - glycosyltransferase family 2 BDI_3652 72 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150009913 Common - multidrug efflux membrane fusion protein BDI_3330 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150007451 Common - putative transport-related, membrane protein BDI_0802 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 150008435 Common - glycerol-3-phosphate dehydrogenase BDI_1817 152 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 150010135 Pathogen - hypothetical protein BDI_3558 2 None None None 150008909 Common - hypothetical protein BDI_2305 22 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150008883 Common - tyrosine type site-specific recombinase BDI_2278 223 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007973 Common - putative ABC transporter ATP-binding protein BDI_1335 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 150009255 Common - putative zinc protease BDI_2657 149 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 150007763 Common - Na(+)-translocating NADH-quinone reductase subunit E BDI_1121 76 COG2209 NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE Energy production and conversion 150007040 Common - outer membrane protein oprM precursor BDI_0383 119 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007049 Common - hypothetical protein BDI_0392 142 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 150010201 Common - hypothetical protein BDI_3624 24 COG3754 RgpF, Lipopolysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 150007760 Pathogen - hypothetical protein BDI_1118 1 None None None 150008380 Common - DNA repair protein RadA BDI_1754 201 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 150008681 Common - acetohydroxyacid synthase small subunit BDI_2071 166 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 150006862 Common - hypothetical protein BDI_0194 5 None None None 150007669 Common - hypothetical protein BDI_1024 3 None None None 150007861 Pathogen - hypothetical protein BDI_1221 3 None None None 150010299 Pathogen - hypothetical protein BDI_3732 3 None None None 150008005 Common - osmo-regulated proline transporter BDI_1368 172 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 150008387 Common - putative xylanase BDI_1761 34 COG0657 Aes, Esterase/lipase Lipid metabolism 150006936 Common - putative copper homeostasis protein BDI_0272 58 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 150008262 Common - putative transcriptional regulator BDI_1631 130 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150007693 Common - cytochrome C peroxidase BDI_1048 94 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 150007483 Pathogen - hypothetical protein BDI_0834 2 None None None 150007583 Common - hypothetical protein BDI_0936 8 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150008270 Common - hypothetical protein BDI_1639 5 None None None 150007310 Common - Holliday junction resolvase-like protein BDI_0655 130 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 150008478 Common - putative N-acetylmannosamine-6-phosphate 2-epimerase BDI_1864 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 150009211 Pathogen - hypothetical protein BDI_2613 2 None None None 150006676 Common - putative ribonucleoside reductase BDI_0002 213 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 150008511 Common obgE GTPase ObgE BDI_1897 249 COG0536 Obg, Predicted GTPase General function prediction only 150009559 Common - DNA polymerase I BDI_2972 218 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 150009143 Common - transcriptional regulator BDI_2545 117 COG0789 SoxR, Predicted transcriptional regulators Transcription 150009009 Common - S-adenosylmethionine:tRNA ribosyltransferase-isomerase BDI_2405 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 150009583 Common - hypothetical protein BDI_2996 4 None None None 150008851 Common - hypothetical protein BDI_2241 15 None None None 150007247 Common - tryptophan synthase subunit beta BDI_0592 226 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 150009681 Pathogen - putative transmembrane protein BDI_3096 2 None None None 150008459 Common - hypothetical protein BDI_1843 7 None None None 150007985 Common - hypothetical protein BDI_1347 16 COG5610 COG5610, Predicted hydrolase (HAD superfamily) General function prediction only 150008656 Common - sugar phosphate isomerase/epimerase BDI_2046 27 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150009769 Common - glucuronate isomerase BDI_3184 59 COG1904 UxaC, Glucuronate isomerase Carbohydrate transport and metabolism 150010142 Common - putative oxidoreductase BDI_3565 20 COG1712 COG1712, Predicted dinucleotide-utilizing enzyme General function prediction only 150006835 Common - putative NADH dehydrogenase/NAD(P)H nitroreductase BDI_0166 62 COG0778 NfnB, Nitroreductase Energy production and conversion 150009563 Common - putative dinitrogenase reductase activating glycohydrolase BDI_2976 42 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 150006819 Common lysS lysyl-tRNA synthetase BDI_0150 246 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 150008039 Common aspS aspartyl-tRNA synthetase BDI_1402 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150006781 Common - putative flagellar motor protein MotB BDI_0107 151 COG1360 MotB, Flagellar motor protein Cell motility and secretion 150007732 Common - DNA gyrase A subunit BDI_1090 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 150008224 Common - hypothetical protein BDI_1590 3 None None None 150006878 Common - glycosyltransferase family 5 BDI_0212 52 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 150007012 Common - ABC transporter, permease protein, putative BDI_0349 31 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150010063 Common - hypothetical protein BDI_3482 89 COG4121 COG4121, Uncharacterized conserved protein Function unknown 150009192 Common - hypothetical protein BDI_2594 126 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 150006985 Common - L,L-diaminopimelate aminotransferase BDI_0321 227 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 150007150 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0495 57 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150008226 Pathogen - hypothetical protein BDI_1592 3 None None None 150009202 Common - hypothetical protein BDI_2604 19 None None None 150007656 Common - hypothetical protein BDI_1011 8 None None None 150010197 Common - putative aminotransferase BDI_3620 191 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150009185 Common - hypothetical protein BDI_2587 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 150009993 Common - DnaJ-domain-containing protein BDI_3412 104 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 150006760 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0086 6 None None None 150007694 Common - putative lipoprotein BDI_1049 135 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 150009613 Pathogen - hypothetical protein BDI_3026 1 None None None 150010175 Common - hypothetical protein BDI_3598 5 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 150007263 Common - ferredoxin domain containing protein BDI_0608 13 COG4739 COG4739, Uncharacterized protein containing a ferredoxin domain Function unknown 150007140 Common secA preprotein translocase subunit SecA BDI_0484 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 150009059 Common - hypothetical protein BDI_2460 10 None None None 150008137 Common - putative purine permease BDI_1503 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 150008306 Common - arylsulfatase A BDI_1675 76 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007425 Common - hypothetical protein BDI_0776 35 COG2006 COG2006, Uncharacterized conserved protein Function unknown 150007378 Pathogen - hypothetical protein BDI_0729 2 None None None 150007914 Common - putative two-component system response regulator BDI_1275 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150007232 Pathogen - hypothetical protein BDI_0577 1 None None None 150007981 Common - conserved hypothetical protein with a conserved domain BDI_1343 12 None None None 150010375 Common - putative transposase BDI_3812 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150010358 Common - thiol:disulfide interchange protein BDI_3793 100 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 150008054 Pathogen - hypothetical protein BDI_1417 3 None None None 150010408 Common - hypothetical protein BDI_3845 107 COG1262 COG1262, Uncharacterized conserved protein Function unknown 150010391 Common - putative CDP-ribitol pyrophosphorylase BDI_3828 182 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 150009160 Pathogen - hypothetical protein BDI_2562 1 None None None 150010406 Common - hypothetical protein BDI_3843 29 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150009831 Common - mobilization protein BmgA BDI_3247 25 None None None 150008518 Common - RNA polymerase ECF-type sigma factor BDI_1904 14 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007435 Common - formate C-acetyltransferase BDI_0786 58 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 150009870 Pathogen - hypothetical protein BDI_3286 1 None None None 150008154 Common - putative helicase BDI_1520 58 COG4889 COG4889, Predicted helicase General function prediction only 150009441 Common - signal peptidase I BDI_2849 121 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 150006982 Common nadE NAD synthetase BDI_0318 182 COG0171 NadE, NAD synthase Coenzyme metabolism 150007816 Common - para-aminobenzoate synthase component I BDI_1174 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 150006696 Pathogen - hypothetical protein BDI_0022 3 None None None 150010013 Common - hypothetical protein BDI_3432 11 COG1649 COG1649, Uncharacterized protein conserved in bacteria Function unknown 150009075 Common - putative anti-sigma factor BDI_2476 37 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150009356 Common - hypothetical protein BDI_2764 25 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 150010080 Common - integrase BDI_3500 139 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150006802 Common - putative nucleotide-diphosphate sugar epimerase BDI_0128 198 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150008032 Common - glutamine ABC transporter glutamine-binding protein BDI_1395 97 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 150009072 Common - putative glycosylhydrolase BDI_2473 7 None None None 150009086 Common murG N-acetylglucosaminyl transferase BDI_2487 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 150008410 Common - putative metal transport-related, exported protein BDI_1786 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007835 Common - hypothetical protein BDI_1193 38 COG4747 COG4747, ACT domain-containing protein General function prediction only 150007215 Common - hypothetical protein BDI_0560 6 None None None 150009623 Common - cation efflux pump BDI_3037 146 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150010434 Pathogen - hypothetical protein BDI_3874 2 None None None 150007112 Common - putative C4-dicarboxylate anaerobic carrier BDI_0456 49 COG1288 COG1288, Predicted membrane protein Function unknown 150007933 Pathogen - hypothetical protein BDI_1294 1 None None None 150007147 Common - putative molybdenum transport ATP-binding protein BDI_0492 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 150007812 Common - dihydropyrimidine dehydrogenase BDI_1170 142 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 150007338 Common - lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex BDI_0688 197 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 150006730 Common - sialic acid-specific 9-O-acetylesterase BDI_0056 17 None None None 150007660 Common - putative type III glutamine synthetase BDI_1015 5 COG3968 COG3968, Uncharacterized protein related to glutamine synthetase General function prediction only 150008698 Common - DNA polymerase III subunit gamma/tau BDI_2088 249 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 150009539 Pathogen - hypothetical protein BDI_2952 2 None None None 150009676 Pathogen - hypothetical protein BDI_3091 2 None None None 150010009 Pathogen - hypothetical protein BDI_3428 2 None None None 150010202 Common - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BDI_3625 189 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 150009828 Pathogen - hypothetical protein BDI_3244 1 None None None 150009774 Pathogen - hypothetical protein BDI_3189 2 None None None 150007179 Common - hypothetical protein BDI_0524 23 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 150007278 Common - putative surface layer protein, with cytochrome c domain BDI_0623 48 COG3391 COG3391, Uncharacterized conserved protein Function unknown 150008385 Common - putative Sec-independent protein translocase BDI_1759 7 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 150009741 Common - hypothetical protein BDI_3156 12 None None None 150008940 Common - RNA polymerase ECF-type sigma factor BDI_2336 91 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150010410 Common - putative phosphatase, HAD family BDI_3848 150 COG0546 Gph, Predicted phosphatases General function prediction only 150007282 Common - cytochrome c biogenesis protein BDI_0627 138 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 150008327 Common - RNA polymerase ECF-type sigma factor BDI_1696 164 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009398 Common - 2-oxoglutarate ferredoxin oxidoreductase subunit beta BDI_2806 110 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 150009571 Pathogen - hypothetical protein BDI_2984 1 None None None 150009298 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BDI_2700 196 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 150010484 Common - NhaP-type Na+/H+ and K+/H+ antiporter BDI_3925 160 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 150008925 Common - arylsulfatase A BDI_2321 92 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150008040 Pathogen - hypothetical protein BDI_1403 1 None None None 150010210 Common - putative xylanase/chitin deacetylase BDI_3633 89 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 150010322 Common - site-specific recombinase BDI_3756 194 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150010471 Common - putative methyltransferase BDI_3911 90 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 150010004 Pathogen - hypothetical protein BDI_3423 2 None None None 150010117 Common - ABC transporter, ATP-binding protein BDI_3537 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 150006990 Common - glutamate synthase, large subunit BDI_0326 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 150008740 Common - putative transposase BDI_2130 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150007726 Common - putative oxidoreductase BDI_1081 214 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 150007886 Common - hypothetical protein BDI_1246 17 None None None 150007479 Common - V-type ATPase, subunit I BDI_0830 50 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 150007023 Common - hypothetical protein BDI_0361 19 COG3538 COG3538, Uncharacterized conserved protein Function unknown 150007618 Common - multidrug efflux pump channel protein BDI_0971 120 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008047 Common - hypothetical protein BDI_1410 5 None None None 150008482 Common - transcriptional regulator BDI_1868 101 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150009181 Common - hypothetical protein BDI_2583 19 None None None 150008935 Common - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase BDI_2331 181 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 150009436 Pathogen - hypothetical protein BDI_2844 1 None None None 150006996 Common - peptidyl-tRNA hydrolase BDI_0332 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 150009063 Pathogen - hypothetical protein BDI_2464 1 None None None 150007593 Common - hypothetical protein BDI_0946 119 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 150009322 Common - hypothetical protein BDI_2724 38 COG5464 COG5464, Uncharacterized conserved protein Function unknown 150009384 Pathogen - hypothetical protein BDI_2792 1 None None None 150010103 Pathogen - hypothetical protein BDI_3523 2 None None None 150008417 Common - hypothetical protein BDI_1798 112 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150010267 Common - hypothetical protein BDI_3696 6 None None None 150008963 Common - methionine aminopeptidase, type I BDI_2359 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 150007877 Common - 2-amino-3-ketobutyrate coenzyme A ligase BDI_1237 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 150010223 Common - imidazolonepropionase BDI_3646 118 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 150009410 Common - hypothetical protein BDI_2818 10 None None None 150006754 Common murQ N-acetylmuramic acid-6-phosphate etherase BDI_0080 83 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 150010502 Common - putative glycosyltransferase BDI_3944 3 COG4360 APA2, ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) Nucleotide transport and metabolism 150007633 Common - cytochrome c peroxidase BDI_0986 85 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 150007573 Common - hypothetical protein BDI_0926 132 COG1739 COG1739, Uncharacterized conserved protein Function unknown 150010053 Pathogen - hypothetical protein BDI_3472 1 None None None 150008013 Common - transcriptional regulator BDI_1376 46 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150009199 Common - hypothetical protein BDI_2601 4 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 150008059 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_1422 50 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150008125 Common - homoserine O-succinyltransferase BDI_1490 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 150008554 Common - putative helicase BDI_1940 33 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 150008713 Common - orotidine 5'-phosphate decarboxylase BDI_2103 68 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 150007712 Common - precorrin-3B C17-methyltransferase BDI_1067 120 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 150007494 Pathogen - hypothetical protein BDI_0845 1 None None None 150006810 Common - hypothetical protein BDI_0141 127 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 150007445 Common cysN sulfate adenylyltransferase subunit 1 BDI_0796 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 150007172 Pathogen - hypothetical protein BDI_0517 3 COG3086 RseC, Positive regulator of sigma E activity Signal transduction mechanisms 150009043 Pathogen - hypothetical protein BDI_2444 1 None None None 150006966 Common - putative lipopolysaccharide biosynthesis related polysaccharide polymerase BDI_0302 4 None None None 150008441 Common - putative two-component regulator sensor kinase BDI_1823 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007192 Common - two-component system response regulator BDI_0537 145 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150007792 Common - DNA-binding protein HU-beta BDI_1150 207 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 150009754 Common - RNA polymerase sigma-54 BDI_3169 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 150009148 Common - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase BDI_2550 208 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 150009635 Pathogen - hypothetical protein BDI_3049 2 None None None 150007522 Pathogen - hypothetical protein BDI_0875 1 None None None 150008602 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase BDI_1988 217 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 150007020 Pathogen - hypothetical protein BDI_0358 2 None None None 150008810 Pathogen - putative transcriptional regulator UpxY-like protein BDI_2200 2 None None None 150008856 Common - dipeptidyl aminopeptidase BDI_2246 94 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150009231 Pathogen - hypothetical protein BDI_2633 1 None None None 150010514 Common - RNA polymerase ECF-type sigma factor BDI_3961 151 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150006880 Common - aspartate alpha-decarboxylase BDI_0214 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 150008207 Common fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase BDI_1573 27 COG2605 COG2605, Predicted kinase related to galactokinase and mevalonate kinase General function prediction only 150009890 Common - mannose-1-phosphate guanylyltransferase BDI_3306 161 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 150006955 Pathogen - hypothetical protein BDI_0291 1 None None None 150009969 Common - glycoside hydrolase family 92 BDI_3387 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150010442 Pathogen - conserved protein found in conjugate transposon BDI_3882 3 None None None 150007963 Common - transcriptional regulator BDI_1324 146 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 150009674 Pathogen - hypothetical protein BDI_3089 1 None None None 150007682 Common - putative serine/threonine phosphatase BDI_1037 129 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 150009833 Pathogen - hypothetical protein BDI_3249 2 None None None 150008812 Common - GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase BDI_2202 201 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150010419 Common - glycine betaine transport ATP-binding protein BDI_3859 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 150008409 Common - hypothetical protein BDI_1785 13 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150008996 Common - parvulin-like peptidyl-prolyl isomerase BDI_2392 147 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 150008239 Common - cation efflux system protein, AcrB/AcrD/AcrF family protein BDI_1605 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 150010492 Common - hypothetical protein BDI_3933 6 None None None 150009729 Common - glycoside hydrolase family 92 BDI_3144 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150008701 Common - hypothetical protein BDI_2091 8 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 150008233 Pathogen - putative transcriptional regulator UpxY-like protein BDI_1599 2 COG0250 NusG, Transcription antiterminator Transcription 150009034 Common - hypothetical protein BDI_2430 8 None None None 150009338 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2745 21 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150008637 Common - putative transmembrane permease BDI_2025 169 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150007841 Common - putative Na+/H+ antiporter BDI_1199 63 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 150009016 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2412 20 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150007571 Common - putative potassium channel subunit BDI_0924 33 None None None 150010306 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase BDI_3740 180 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 150010269 Common - undecaprenyl pyrophosphate synthetase BDI_3698 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 150008147 Common - glycoside hydrolase family 73 BDI_1513 30 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 150008093 Common - conserved hypothetical protein, putative mannosyltransferase BDI_1457 4 None None None 150010101 Pathogen - hypothetical protein BDI_3521 1 None None None 150007902 Pathogen - hypothetical protein BDI_1262 2 None None None 150007735 Common - predicted metal-dependent phosphoesterase BDI_1093 35 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 150008626 Common - putative transcriptional regulator BDI_2012 4 COG1709 COG1709, Predicted transcriptional regulator Transcription 150009907 Common - hypothetical protein BDI_3324 97 COG1262 COG1262, Uncharacterized conserved protein Function unknown 150010255 Common - ferredoxin--NADP(+) reductase subunit alpha BDI_3681 83 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 150010118 Common - putative ABC transporter protein BDI_3538 170 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 150010272 Common - cationic outer membrane protein OmpH BDI_3701 6 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 150007608 Common - putative membrane transport protein BDI_0961 55 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 150007798 Common - putative arylsulfatase BDI_1156 81 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150008456 Common - lipopolysaccharide biosynthesis protein BDI_1840 12 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 150010146 Common - hypothetical protein BDI_3569 80 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150007182 Common - putative long-chain-fatty-acid--CoA ligase BDI_0527 216 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 150009315 Common - Na+/H+ antiporter BDI_2717 59 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 150010452 Pathogen - hypothetical protein BDI_3892 1 None None None 150010131 Common rpsT 30S ribosomal protein S20 BDI_3552 132 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 150008171 Common - putative fosmidomycin resistance protein BDI_1537 72 None None None 150009781 Common - DNA topoisomerase IV subunit A BDI_3197 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 150009723 Pathogen - hypothetical protein BDI_3138 3 None None None 150009786 Common - putative FKBP-type peptidyl-prolyl cis-trans isomerase 1 BDI_3202 62 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 150010225 Common - histidine ammonia-lyase BDI_3648 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 150007287 Common - hypothetical protein BDI_0632 3 None None None 150009557 Common - deoxyribose-phosphate aldolase BDI_2970 133 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 150008784 Common - putative oxidoreductase BDI_2174 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150006889 Common - cation efflux system protein BDI_0225 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 150010311 Common - hypothetical protein BDI_3745 9 None None None 150010111 Common - putative TonB-dependent transmembrane receptor protein BDI_3531 65 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009200 Common - hypothetical protein BDI_2602 49 COG3488 COG3488, Predicted thiol oxidoreductase Energy production and conversion 150006977 Pathogen - hypothetical protein BDI_0313 2 None None None 150010368 Common - phosphoenolpyruvate synthase/pyruvate phosphate dikinase BDI_3805 20 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 150008373 Common - ATP-dependent DNA helicase RecQ BDI_1747 231 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 150010283 Common - putative archaeal ATPase BDI_3712 21 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 150009167 Common - CDP-diacylglycerol-serine O-phosphatidyltransferase BDI_2569 145 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 150010055 Common - two-component system sensor histidine kinase/response regulator, hybrid BDI_3474 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008432 Common - Ni,Fe-hydrogenase maturation factor BDI_1814 85 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 150008790 Common - ribosomal large subunit pseudouridine synthase A BDI_2180 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 150007220 Common - putative acyl carrier protein BDI_0565 6 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 150007124 Common - metallo-beta-lactamase family protein BDI_0468 217 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 150008505 Common - hypothetical protein BDI_1891 76 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 150007063 Common - putative heavy-metal binding protein BDI_0406 6 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 150006777 Common - hypothetical protein BDI_0103 11 COG3254 COG3254, Uncharacterized conserved protein Function unknown 150007257 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0602 9 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007395 Common - hypothetical protein BDI_0746 3 None None None 150009358 Common - lysyl endopeptidase precursor BDI_2766 13 None None None 150006969 Common - transposase BDI_0305 74 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 150010260 Common - argininosuccinate lyase BDI_3689 230 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 150008465 Common - ABC transporter, ATP-binding protein BDI_1849 249 COG4152 COG4152, ABC-type uncharacterized transport system, ATPase component General function prediction only 150007229 Common - putative UDP-N-acetylglucosamine 2-epimerase BDI_0574 154 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 150009597 Common - putative xanthosine triphosphate pyrophosphatase BDI_3010 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 150007329 Common - putative patatin-like phospholipase BDI_0679 96 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 150007567 Common - transcriptional regulator BDI_0920 100 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 150009590 Pathogen - hypothetical protein BDI_3003 2 None None None 150007990 Pathogen - hypothetical protein BDI_1352 1 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 150009984 Common - hypothetical protein BDI_3403 52 COG2819 COG2819, Predicted hydrolase of the alpha/beta superfamily General function prediction only 150006911 Common - hypothetical protein BDI_0247 4 None None None 150007891 Common - transcriptional regulator BDI_1251 118 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 150007368 Pathogen - hypothetical protein BDI_0719 2 None None None 150008819 Pathogen - hypothetical protein BDI_2209 1 None None None 150010521 Common rpsR 30S ribosomal protein S18 BDI_3968 194 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 150009401 Common - shikimate kinase BDI_2809 198 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 150009074 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2475 11 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009663 Common - polysaccharide deacetylase BDI_3078 101 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 150008580 Common - putative ABC transporter permease component BDI_1966 57 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150007924 Common - hypothetical protein BDI_1285 10 None None None 150007366 Common - putative transposase BDI_0717 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 150007675 Common - RNA methyltransferase BDI_1030 194 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 150010412 Common - metallo-beta-lactamase superfamily protein BDI_3852 43 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 150008750 Common - hypothetical protein BDI_2140 3 COG3378 COG3378, Predicted ATPase General function prediction only 150007954 Pathogen - hypothetical protein BDI_1315 2 None None None 150007803 Common - ATP-dependent RNA helicase DeaD BDI_1161 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 150010006 Common - glutamine-dependent carbamyl phosphate synthetase BDI_3425 230 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 150007770 Common - guanine aminohydrolase BDI_1128 165 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 150007469 Common - glutaminase BDI_0820 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 150008181 Common - putative tansport related protein BDI_1547 44 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 150008798 Pathogen - hypothetical protein BDI_2188 2 COG2433 COG2433, Uncharacterized conserved protein Function unknown 150008334 Common - putative transmembrane protein BDI_1706 132 COG2860 COG2860, Predicted membrane protein Function unknown 150007383 Common - DNA resolvase BDI_0734 92 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 150009961 Common - putative outer membrane protein probably involved in nutrient binding BDI_3379 8 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007076 Pathogen - hypothetical protein BDI_0419 1 None None None 150006792 Common - putative sugar nucleotide epimerase BDI_0118 67 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 150007461 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase BDI_0812 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 150008345 Pathogen - hypothetical protein BDI_1719 2 None None None 150008914 Common - OmpA-related protein BDI_2310 29 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007899 Pathogen - hypothetical protein BDI_1259 2 None None None 150009736 Common - hypothetical protein BDI_3151 189 COG0628 PerM, Predicted permease General function prediction only 150008493 Common - hypothetical protein BDI_1879 6 None None None 150008398 Common - hypothetical protein BDI_1774 24 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 150008585 Common - ABC transporter permease BDI_1971 117 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150008103 Common - putative cell wall surface anchor family protein BDI_1467 12 None None None 150009599 Common - acyltransferase BDI_3012 44 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 150009179 Common - hypothetical protein BDI_2581 18 None None None 150006904 Common - putative anti-sigma factor BDI_0240 36 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150008391 Common - hypothetical protein BDI_1765 5 None None None 150009805 Common - putative outer membrane protein BDI_3221 5 None None None 150009394 Common - putative transcriptional regulator BDI_2802 91 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 150010369 Common - putative endonuclease/exonuclease/phosphatase family protein BDI_3806 5 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 150008230 Common - polysaccharide export outer membrane protein BDI_1596 59 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150007200 Common - hypothetical protein BDI_0545 5 None None None 150010373 Pathogen - hypothetical protein BDI_3810 2 None None None 150009514 Pathogen - hypothetical protein BDI_2927 2 None None None 150009946 Pathogen - hypothetical protein BDI_3364 1 None None None 150009155 Common - hypothetical protein BDI_2557 7 None None None 150009305 Pathogen - hypothetical protein BDI_2707 2 None None None 150009250 Pathogen - hypothetical protein BDI_2652 1 None None None 150008767 Common - putative DNA-binding protein BDI_2157 13 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 150010476 Common - hypothetical protein BDI_3916 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 150007545 Pathogen - hypothetical protein BDI_0898 1 None None None 150010382 Common - hypothetical protein BDI_3819 3 None None None 150009308 Common - NAD-dependent deacetylase BDI_2710 151 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 150008659 Common - hypothetical protein BDI_2049 6 None None None 150008496 Common - hypothetical protein BDI_1882 6 None None None 150008315 Common - hypothetical protein BDI_1684 4 None None None 150010074 Common - hypothetical protein BDI_3493 54 COG0795 COG0795, Predicted permeases General function prediction only 150009057 Common - ATPase of the AAA+ class BDI_2458 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 150009488 Common - fructokinase BDI_2901 115 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150009900 Common - chloramphenicol acetyltransferase BDI_3317 22 COG4845 COG4845, Chloramphenicol O-acetyltransferase Defense mechanisms 150006843 Common - nitroreductase family protein BDI_0174 137 COG0778 NfnB, Nitroreductase Energy production and conversion 150006876 Common - glycoside hydrolase family 57, candidate alpha-glycosidase BDI_0210 24 COG1449 COG1449, Alpha-amylase/alpha-mannosidase Carbohydrate transport and metabolism 150009116 Pathogen - hypothetical protein BDI_2517 2 None None None 150007528 Common - hypothetical protein BDI_0881 35 COG4680 COG4680, Uncharacterized protein conserved in bacteria Function unknown 150008543 Common - hypothetical protein BDI_1929 3 None None None 150010093 Common - transposase BDI_3513 54 None None None 150008774 Pathogen - hypothetical protein BDI_2164 2 None None None 150009685 Common - putative riboflavin biosynthesis protein RibF BDI_3100 211 COG0196 RibF, FAD synthase Coenzyme metabolism 150007408 Common - putative phage integrase BDI_0759 10 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150007909 Common - hypothetical protein BDI_1270 9 None None None 150008027 Common - hypothetical protein BDI_1390 50 COG2035 COG2035, Predicted membrane protein Function unknown 150008462 Common - conserved hypothetical transmembrane protein; putative transmembrane protein BDI_1846 6 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150006893 Common - thiol:disulfide interchange protein BDI_0229 167 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150008758 Common - hypothetical protein BDI_2148 22 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 150006854 Common - hypothetical protein BDI_0186 6 None None None 150009241 Pathogen - hypothetical protein BDI_2643 1 None None None 150007189 Common - putative acetylhydrolase BDI_0534 11 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150009415 Common - hypothetical protein BDI_2823 5 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150006713 Common - glycosyltransferase family 4 BDI_0039 179 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009426 Common - two-component system sensor histidine kinase BDI_2834 224 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 150009621 Common - hypothetical protein BDI_3034 3 None None None 150009272 Common - hypothetical protein BDI_2674 17 None None None 150008524 Pathogen - hypothetical protein BDI_1910 3 None None None 150008084 Common - hypothetical protein BDI_1448 21 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 150009976 Common eno phosphopyruvate hydratase BDI_3395 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 150010034 Common - RNA polymerase ECF-type sigma factor BDI_3453 116 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150006697 Pathogen - hypothetical protein BDI_0023 2 None None None 150008440 Common - peptidase BDI_1822 143 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 150009238 Common - hypothetical protein BDI_2640 4 None None None 150010333 Common - conserved hypothetical protein, putative glycosyltransferase BDI_3767 11 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 150009509 Common - glycosyltransferase family 32 BDI_2922 30 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 150008957 Common rplQ 50S ribosomal protein L17 BDI_2353 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 150009137 Pathogen - hypothetical protein BDI_2538 1 None None None 150009506 Common - hypothetical protein BDI_2919 12 None None None 150007854 Common - putative hydrolase BDI_1214 85 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 150007307 Common - GDP-D-mannose dehydratase BDI_0652 219 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 150008725 Common - hypothetical protein BDI_2115 4 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 150008693 Common - putative multidrug resistance protein BDI_2083 111 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 150010303 Common - outer membrane protein TonB BDI_3737 10 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 150007094 Common - glycosyltransferase family 4 BDI_0437 176 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150008736 Common - hypothetical protein BDI_2126 73 COG1432 COG1432, Uncharacterized conserved protein Function unknown 150008285 Common - putative integral membrane protein BDI_1654 4 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 150008647 Common - hypothetical protein BDI_2035 11 None None None 150008089 Common - hypothetical protein BDI_1453 8 None None None 150008878 Common rplK 50S ribosomal protein L11 BDI_2268 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 150009888 Common - ribosome-binding factor A BDI_3304 15 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 150008192 Common - outer membrane protein probably involved in nutrient binding BDI_1558 12 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009463 Common - hypothetical protein BDI_2876 11 None None None 150008684 Common - RNA polymerase ECF-type sigma factor BDI_2074 62 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008186 Common - hypothetical protein BDI_1552 141 COG2962 RarD, Predicted permeases General function prediction only 150007727 Common - hypothetical protein BDI_1082 23 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 150009606 Common - hypothetical protein BDI_3019 8 None None None 150006708 Common - conserved hypothetical protein, putative glycosyltransferase BDI_0034 6 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009469 Common - lipoprotein releasing system ATP-binding protein BDI_2882 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 150007837 Common - hypothetical protein BDI_1195 10 None None None 150009797 Common - outer membrane protein TonB BDI_3213 10 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 150006850 Common - hypothetical protein BDI_0182 10 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 150008267 Common - putative ABC transport system, membrane protein BDI_1636 15 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150007515 Pathogen - hypothetical protein BDI_0867 1 None None None 150007163 Common - haloacid dehalogenase-like hydrolase BDI_0508 39 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 150006771 Common - glycine betaine/L-proline transport system permease BDI_0097 216 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 150006722 Common - putative Fe-S oxidoreductase BDI_0048 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 150009954 Common - two-component system sensor histidine kinase/response regulator, hybrid BDI_3372 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008323 Pathogen - hypothetical protein BDI_1692 3 None None None 150010064 Common - thioredoxin BDI_3483 235 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 150006740 Pathogen - hypothetical protein BDI_0066 2 None None None 150009293 Common tpiA triosephosphate isomerase BDI_2695 220 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 150009373 Common - putative glycosyltransferase BDI_2781 6 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150009617 Common - putative Icc family phosphohydrolase BDI_3030 17 COG1409 Icc, Predicted phosphohydrolases General function prediction only 150008473 Common - conserved hypothetical protein with conserved domain BDI_1859 180 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 150007117 Common - acyl-CoA dehydrogenase BDI_0461 153 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 150008611 Common - chaperone DnaK protein BDI_1997 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 150007134 Common rimM 16S rRNA-processing protein BDI_0478 49 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 150009875 Common - glucose-6-phosphate isomerase BDI_3291 11 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 150006925 Common - aspartokinase/homoserine dehydrogenase BDI_0261 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 150008536 Common - hypothetical protein BDI_1922 21 COG3059 COG3059, Predicted membrane protein Function unknown 150007827 Pathogen - hypothetical protein BDI_1185 1 None None None 150007640 Pathogen - hypothetical protein BDI_0995 1 None None None 150010024 Pathogen - putative lipoprotein BDI_3443 2 None None None 150008199 Common - hypothetical protein BDI_1565 6 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 150008568 Common - putative phosphoesterase, PAP2 family BDI_1954 18 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 150007413 Common - putative two-component system sensor histidine kinase BDI_0764 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150006944 Common - conserved hypothetical protein, putative hexulose-6-phosphate isomerase BDI_0280 6 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 150008509 Common - hypothetical protein BDI_1895 24 COG3382 COG3382, Uncharacterized conserved protein Function unknown 150009396 Common - hypothetical protein BDI_2804 44 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150010061 Common - two-component system sensor histidine kinase BDI_3480 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008654 Common - hypothetical protein BDI_2044 35 COG2388 COG2388, Predicted acetyltransferase General function prediction only 150008115 Common - fructose-bisphosphate aldolase BDI_1480 62 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 150007943 Common - hypothetical protein BDI_1304 5 None None None 150008280 Common - glycoside hydrolase family 78 BDI_1649 23 None None None 150006783 Common nrfA cytochrome c nitrite reductase BDI_0109 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 150008150 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1516 6 None None None 150007502 Common - hypothetical protein BDI_0854 2 None None None 150008922 Common - RNA polymerase ECF-type sigma factor BDI_2318 116 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007916 Common - hypothetical protein BDI_1277 6 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150010372 Common - glutamate dehydrogenase BDI_3809 170 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 150007152 Pathogen - hypothetical protein BDI_0497 2 None None None 150009095 Common - hemolysin A BDI_2496 25 None None None 150007622 Common - putative glutamate/ aspartate transporter BDI_0975 92 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 150010507 Common - phosphoglycerate mutase BDI_3954 98 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 150007159 Common - recombination factor protein RarA BDI_0504 248 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 150008803 Common - dipeptidyl aminopeptidase IV BDI_2193 103 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 150006983 Pathogen - hypothetical protein BDI_0319 1 None None None 150008052 Common - hemolysin erythrocyte lysis protein 2 BDI_1415 203 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 150010041 Pathogen - hypothetical protein BDI_3460 1 None None None 150008000 Common - putative bacterioferritin-related protein BDI_1362 36 COG2406 COG2406, Protein distantly related to bacterial ferritins General function prediction only 150007351 Common - two-component system response regulator BDI_0702 108 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 150009683 Common - putative membrane protein involved in the export of O-antigen and teichoic acid BDI_3098 9 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008311 Common - RNA polymerase ECF-type sigma factor BDI_1680 147 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150010292 Common - adenylosuccinate lyase BDI_3725 236 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 150009054 Common - hypothetical protein BDI_2455 4 None None None 150009974 Common - pyruvate-formate lyase-activating enzyme BDI_3393 136 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 150008382 Common - glycoside hydrolase family 92 BDI_1756 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150009458 Common - N-acetylmuramoyl-L-alanine amidase BDI_2871 14 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 150006752 Common - Na+/H+ antiporter NhaD and related arsenite permease BDI_0078 52 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 150007477 Common - V-type ATP synthase subunit B BDI_0828 247 COG1156 NtpB, Archaeal/vacuolar-type H+-ATPase subunit B Energy production and conversion 150009886 Common - pyruvate kinase BDI_3302 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 150009290 Common - hypothetical protein BDI_2692 29 COG3041 COG3041, Uncharacterized protein conserved in bacteria Function unknown 150007935 Common - glycosyltransferase family 2 BDI_1296 146 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 150008294 Common - putative outer membrane protein/protective antigen OMA87 BDI_1663 6 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 150008415 Common - glycoside hydrolase family 78 BDI_1796 15 None None None 150010015 Common - putative outer membrane protein TolC BDI_3434 21 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007662 Common - putative exported periplasmic protein BDI_1017 22 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 150009329 Common - glycoside hydrolase family 92 BDI_2731 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150010356 Common - hypothetical protein BDI_3791 4 None None None 150009991 Common - putative heme-binding protein FetB BDI_3410 24 COG4822 CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase Coenzyme metabolism 150010195 Common - hypothetical protein BDI_3618 24 None None None 150009581 Common - putative RNA polymerase ECF-type sigma factor BDI_2994 161 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007235 Common - carbamyl phosphate synthetase BDI_0580 231 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 150009406 Common - ribonuclease H-related protein BDI_2814 20 COG3341 COG3341, Predicted double-stranded RNA/RNA-DNA hybrid binding protein General function prediction only 150009284 Common - hypothetical protein BDI_2686 5 None None None 150009429 Common cysS cysteinyl-tRNA synthetase BDI_2837 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150006882 Common - hypothetical protein BDI_0216 18 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 150007142 Common - hypothetical protein BDI_0486 8 None None None 150006734 Common - glycoside hydrolase family 26, candidate beta-glycosidase BDI_0060 12 COG4124 ManB, Beta-mannanase Carbohydrate transport and metabolism 150007724 Common - cationic amino acid transporter BDI_1079 182 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 150009451 Pathogen - hypothetical protein BDI_2864 2 None None None 150009772 Common - hypothetical protein BDI_3187 8 None None None 150008251 Common - glycoside hydrolase family 92 BDI_1620 26 COG3537 COG3537, Putative alpha-1,2-mannosidase Carbohydrate transport and metabolism 150009589 Pathogen - hypothetical protein BDI_3002 1 None None None 150008156 Common - hypothetical protein BDI_1522 85 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 150009039 Common era GTP-binding protein Era BDI_2435 234 COG1159 Era, GTPase General function prediction only 150008825 Common - UDP-glucose 6-dehydrogenase BDI_2215 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 150007149 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0494 9 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150009752 Common - ABC transporter ATP-binding protein BDI_3167 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 150007430 Common - hypothetical protein BDI_0781 57 COG4111 COG4111, Uncharacterized conserved protein General function prediction only 150007119 Common - electron transfer flavoprotein beta-subunit BDI_0463 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 150006804 Pathogen - hypothetical protein BDI_0130 1 None None None 150009898 Pathogen - hypothetical protein BDI_3315 2 None None None 150007606 Common - putative periplasmic protein BDI_0959 16 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150009718 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3133 15 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007433 Common xylE D-xylose transporter XylE BDI_0784 113 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 150009809 Pathogen - hypothetical protein BDI_3225 1 None None None 150010394 Common - putative dehydratase BDI_3831 167 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150007423 Common - tRNA-guanine transglycosylase BDI_0774 230 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 150007492 Common - hypothetical protein BDI_0843 2 None None None 150007843 Common - hypothetical protein BDI_1201 19 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 150007001 Common - putative membrane fusion protein transporter BDI_0337 176 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 150007818 Common - hypothetical protein BDI_1176 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 150008222 Pathogen - hypothetical protein BDI_1588 1 None None None 150009700 Common - putative anti-sigma factor BDI_3115 27 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 150007710 Common - precorrin-4 C11-methyltransferase BDI_1065 203 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 150008578 Common - ABC transporter ATP-binding protein BDI_1964 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 150008261 Pathogen - hypothetical protein BDI_1630 1 None None None 150007738 Common - putative anti-sigma regulatory factor BDI_1096 45 COG2172 RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) Signal transduction mechanisms 150006902 Common - glucosamine-6-phosphate deaminase-like protein BDI_0238 84 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 150008676 Common - putative internalin-related protein BDI_2066 10 None None None 150009314 Common - Na+/H+ antiporter BDI_2716 59 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 150008688 Common - putative sulfatase BDI_2078 92 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150008064 Common - acetyltransferase BDI_1427 220 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150009550 Common - hypothetical protein BDI_2963 4 None None None 150010030 Pathogen - hypothetical protein BDI_3449 2 None None None 150010192 Common - putative nucleoside-diphosphate sugar epimerase/dehydrase BDI_3615 190 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150010259 Pathogen - hypothetical protein BDI_3688 2 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 150006864 Common - hypothetical protein BDI_0196 7 None None None 150009869 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3285 27 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009067 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2468 6 None None None 150009541 Common - putative hemolysin BDI_2954 7 None None None 150008332 Common - putative metallo-beta-lactamase superfamily hydrolase BDI_1704 60 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 150009713 Common - hypothetical protein BDI_3128 16 COG4354 COG4354, Predicted bile acid beta-glucosidase Carbohydrate transport and metabolism 150010160 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3583 5 None None None 150007701 Common - glycosyltransferase family 51 BDI_1056 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 150007108 Pathogen - hypothetical protein BDI_0451 3 None None None 150009852 Common - hypothetical protein BDI_3268 6 None None None 150010169 Common - putative TonB-dependent receptor BDI_3592 6 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150010478 Common - arylsulfatase A BDI_3919 77 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 150007968 Common - putative translation initiation inhibitor BDI_1329 90 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 150007857 Pathogen - hypothetical protein BDI_1217 2 None None None 150010432 Pathogen - hypothetical protein BDI_3872 2 None None None 150010148 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3571 9 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150008559 Common rpmE2 50S ribosomal protein L31 type B BDI_1945 155 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 150009615 Pathogen - hypothetical protein BDI_3028 2 None None None 150006994 Common - hypothetical protein BDI_0330 24 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 150007629 Common - putative aminotransferase B BDI_0982 232 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 150007539 Pathogen - hypothetical protein BDI_0892 1 None None None 150008715 Common - bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase BDI_2105 191 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 150008854 Common - hypothetical protein BDI_2244 8 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009257 Common - hypothetical protein BDI_2659 6 None None None 150007975 Common - outer membrane efflux protein BDI_1337 27 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150009213 Pathogen - hypothetical protein BDI_2615 2 None None None 150006779 Pathogen - hypothetical protein BDI_0105 1 None None None 150008476 Common - hypothetical protein BDI_1862 6 None None None 150010137 Common - putative anti-anti-sigma factor BDI_3560 47 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 150007765 Common - Na(+)-translocating NADH-quinone reductase subunit C BDI_1123 49 COG2869 NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC Energy production and conversion 150007788 Common - putative capsule polysaccharide export protein BDI_1146 104 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 150009891 Common - hypothetical protein BDI_3308 143 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 150008603 Common - putative shikimate 5-dehydrogenase BDI_1989 217 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 150009352 Common - polynucleotide phosphorylase/polyadenylase BDI_2760 237 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 150010068 Common rplM 50S ribosomal protein L13 BDI_3487 228 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 150007762 Common - Na(+)-translocating NADH-quinone reductase subunit F BDI_1120 129 COG2871 NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF Energy production and conversion 150007317 Common rpmI 50S ribosomal protein L35 BDI_0662 194 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 150006921 Common - ferritin A BDI_0257 85 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 150009641 Common rnpA ribonuclease P BDI_3055 8 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 150006688 Pathogen - hypothetical protein BDI_0014 1 None None None 150007581 Common - putative outer membrane protein BDI_0934 78 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 150008358 Pathogen - conserved hypothetical protein, putative non-specific DNA-binding protein BDI_1732 2 None None None 150010153 Common - ABC transporter, putative permease BDI_3576 175 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150007290 Pathogen - hypothetical protein BDI_0635 2 None None None 150010301 Common - putative deoxyribonuclease BDI_3735 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 150006999 Common - putative NADH:flavin oxidoreductase BDI_0335 33 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 150007667 Common - proline dehydrogenase, alpha subunit BDI_1022 75 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 150006934 Common - ATP synthase epsilon chain BDI_0270 117 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 150009002 Common - putative metal-dependent membrane protease BDI_2398 27 None None None 150008662 Common - GTP pyrophosphokinase BDI_2052 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 150008813 Common - GDP-mannose 4,6-dehydratase BDI_2203 229 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 150008903 Common - primosomal protein N' BDI_2298 211 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 150009003 Common - ABC transporter ATP-binding protein BDI_2399 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 150006939 Common - cation/multidrug efflux pump BDI_0275 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150009205 Pathogen - hypothetical protein BDI_2607 1 None None None 150007868 Common - putative peptidase/protease family protein BDI_1228 144 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150007884 Common - Mg2+/Co2+ transport protein BDI_1244 163 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 150009367 Common - S-adenosyl-L-homocysteine hydrolase BDI_2775 177 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 150009573 Pathogen - hypothetical protein BDI_2986 1 None None None 150007006 Common - putative transmembrane acyltransferase protein BDI_0342 29 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 150007320 Common - glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase BDI_0665 60 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150008087 Common - putative bacterioferritin co-migratory protein BDI_1451 221 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150009029 Pathogen - hypothetical protein BDI_2425 2 None None None 150009919 Common - hypothetical protein BDI_3336 6 None None None 150008484 Common - putative dehydrogenase BDI_1870 156 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150006822 Common - hypothetical protein BDI_0153 2 COG4243 COG4243, Predicted membrane protein Function unknown 150006919 Pathogen - hypothetical protein BDI_0255 2 None None None 150010217 Common - hypothetical protein BDI_3640 7 COG2361 COG2361, Uncharacterized conserved protein Function unknown 150009328 Pathogen - RNA polymerase ECF-type sigma factor BDI_2730 2 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150008569 Common - ABC transporter permease BDI_1955 6 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 150008142 Common - putative outer membrane protein probably involved in nutrient binding BDI_1508 22 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150008898 Pathogen - hypothetical protein BDI_2293 1 None None None 150010516 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3963 14 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150007719 Common - aconitate hydratase BDI_1074 223 COG1048 AcnA, Aconitase A Energy production and conversion 150010099 Pathogen - hypothetical protein BDI_3519 1 None None None 150008745 Common - hypothetical protein BDI_2135 26 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 150009849 Common - transposase BDI_3265 90 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150006941 Common - hypothetical protein BDI_0277 7 None None None 150009130 Pathogen - hypothetical protein BDI_2531 1 None None None 150009846 Pathogen - hypothetical protein BDI_3262 2 None None None 150008437 Common - putative transmembrane protein BDI_1819 119 COG2855 COG2855, Predicted membrane protein Function unknown 150010445 Common - conserved protein found in conjugate transposon BDI_3885 5 None None None 150010183 Pathogen - hypothetical protein BDI_3606 2 None None None 150010037 Common - putative outer membrane protein probably involved in nutrient binding BDI_3456 22 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010351 Common - glycoside hydrolase family 30, candidate beta-glycosidase BDI_3785 23 COG5520 COG5520, O-Glycosyl hydrolase Cell envelope biogenesis, outer membrane 150009633 Pathogen - hypothetical protein BDI_3047 3 None None None 150008988 Common rpsL 30S ribosomal protein S12 BDI_2384 246 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 150008339 Common - thioredoxin BDI_1711 230 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 150009625 Pathogen - hypothetical protein BDI_3039 2 None None None 150008405 Common - putative transporter periplasmic binding protein BDI_1781 147 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 150008765 Pathogen - hypothetical protein BDI_2155 1 None None None 150009306 Pathogen - putative outer membrane protein BDI_2708 3 None None None 150007456 Common - two-component system sensor histidine kinase BDI_0807 221 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 150010219 Pathogen - hypothetical protein BDI_3642 1 None None None 150007089 Common - putative hexapeptide transferase family protein BDI_0432 6 None None None 150008595 Pathogen - hypothetical protein BDI_1981 3 None None None 150009979 Pathogen - hypothetical protein BDI_3398 3 None None None 150009443 Common - serine-pyruvate aminotransferase BDI_2851 188 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 150008545 Common - two-component system sensor histidine kinase BDI_1931 206 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008579 Common - ABC transporter permease BDI_1965 6 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150009794 Common - putative cytochrome B subunit BDI_3210 22 None None None 150006953 Common prmA ribosomal protein L11 methyltransferase BDI_0289 165 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 150006694 Pathogen - hypothetical protein BDI_0020 2 None None None 150006720 Common - glycosyltransferase family 2 BDI_0046 148 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 150007080 Common - putative nucleoside-diphosphate sugar epimerase/dehydrase BDI_0423 181 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 150009762 Common - peptidase, M23/M37 family, putative BDI_3177 113 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 150007197 Common - putative transcriptional regulator BDI_0542 12 COG1846 MarR, Transcriptional regulators Transcription 150006980 Pathogen - hypothetical protein BDI_0316 2 None None None 150007965 Common - putative two-component system sensor histidine kinase BDI_1326 206 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007754 Common - dihydroorotate dehydrogenase BDI_1112 231 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 150007331 Common - heat shock protein 90 BDI_0681 148 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 150008974 Common rplN 50S ribosomal protein L14 BDI_2370 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 150010209 Pathogen - hypothetical protein BDI_3632 1 None None None 150009376 Common - aminotransferase BDI_2784 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 150007443 Common - putative adenylylsulfate kinase BDI_0794 143 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 150008166 Common - hypothetical protein BDI_1532 45 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 150008308 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1677 10 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150007616 Common - imidazole glycerol-phosphate dehydratase/histidinol phosphatase BDI_0969 218 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 150008994 Common - peptidyl-prolyl cis-trans isomerase BDI_2390 137 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 150009223 Common - putative dehydrogenase BDI_2625 138 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008070 Common - recombination protein RecR BDI_1434 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 150009496 Common - multidrug resistance protein mexB BDI_2909 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 150008077 Common - GTPase EngB BDI_1441 188 COG0218 COG0218, Predicted GTPase General function prediction only 150009336 Common - glycoside hydrolase family 13, candidate alpha-glycosidase BDI_2743 169 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 150009537 Common - conserved hypothetical protein, putative regulatory protein with a cAMP-binding domain BDI_2950 24 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 150007217 Common - hypothetical protein BDI_0562 20 None None None 150007448 Common - DNA ligase BDI_0799 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 150006732 Common - putative cation symporter BDI_0058 86 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 150007190 Common - glycoside hydrolase family 97 BDI_0535 18 None None None 150008946 Common - hypothetical protein BDI_2342 5 None None None 150007534 Pathogen - hypothetical protein BDI_0887 1 None None None 150008375 Common - ROK family transcriptional repressor BDI_1749 152 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 150009188 Common - hypothetical protein BDI_2590 155 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 150009070 Common - RNA polymerase ECF-type sigma factor BDI_2471 133 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150007814 Pathogen - hypothetical protein BDI_1172 1 None None None 150009351 Common - hypothetical protein BDI_2759 6 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 150008404 Common - hypothetical protein BDI_1780 6 None None None 150009669 Common - putative lipoprotein BDI_3084 24 None None None 150010082 Common - hypothetical protein BDI_3502 3 COG3378 COG3378, Predicted ATPase General function prediction only 150009153 Common - putative two-component system sensor histidine kinase BDI_2555 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150007055 Common - putative ferredoxin-type protein BDI_0398 92 COG0348 NapH, Polyferredoxin Energy production and conversion 150007722 Common - hypothetical protein BDI_1077 11 COG1359 COG1359, Uncharacterized conserved protein Function unknown 150008286 Common - putative nucleoside hydrolase BDI_1655 7 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 150007596 Common - conserved hypothetical protein BatB BDI_0949 65 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 150008727 Common - phosphorylase family protein BDI_2117 85 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 150007276 Common - two-component sensor histidine kinase, with response regulator receiver domain BDI_0621 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150007047 Common - putative outer membrane protein, probably involved in nutrient binding BDI_0390 10 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150009661 Common - hypothetical protein BDI_3076 49 COG2388 COG2388, Predicted acetyltransferase General function prediction only 150009309 Pathogen - hypothetical protein BDI_2711 1 None None None 150009158 Pathogen - hypothetical protein BDI_2560 1 None None None 150010486 Common - glycosyltransferase family 20, candidate bifunctional trehalose-6-phosphate synthase/trehalose-6-phosphate phosphatase BDI_3927 97 COG0380 OtsA, Trehalose-6-phosphate synthase Carbohydrate transport and metabolism 150007280 Common - hypothetical protein BDI_0625 3 COG3822 COG3822, ABC-type sugar transport system, auxiliary component General function prediction only 150008882 Common - sigma-54 modulation protein BDI_2277 58 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 150009141 Common alaS alanyl-tRNA synthetase BDI_2543 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150008356 Common - putative exonuclease BDI_1730 103 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 150009631 Common - hypothetical protein BDI_3045 4 None None None 150007879 Common - putative ATP:cob(I)alamin adenosyltransferase BDI_1239 129 COG2096 COG2096, Uncharacterized conserved protein Function unknown 150007833 Common - hypothetical protein BDI_1191 9 None None None 150009175 Common - putative hydrolase BDI_2577 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 150008389 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1763 31 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150009084 Common - cell division protein FtsQ BDI_2485 8 None None None 150010108 Pathogen - hypothetical protein BDI_3528 1 None None None 150007305 Common - putative glucose-1-phosphate thymidyl transferase BDI_0650 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 150010188 Pathogen - hypothetical protein BDI_3611 2 None None None 150008976 Common - 50S ribosomal protein L29 BDI_2372 8 None None None 150008507 Pathogen - hypothetical protein BDI_1893 3 None None None 150009738 Common - hypothetical protein BDI_3153 129 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150007903 Pathogen - hypothetical protein BDI_1263 2 None None None 150008643 Pathogen - hypothetical protein BDI_2031 2 None None None 150007549 Pathogen - hypothetical protein BDI_0902 1 None None None 150009575 Common - periplasmic component of the Tol biopolymer transport system BDI_2988 141 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 150010085 Common - mobilization protein BmgA BDI_3505 18 None None None 150007926 Common - glycosyltransferase family 2 BDI_1287 18 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150007565 Common - putative modulator of DNA gyrase BDI_0918 157 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 150010072 Common - aspartate aminotransferase BDI_3491 241 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 150009497 Common - putative multidrug resistance protein BDI_2910 127 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 150007971 Common - putative ABC transport system, membrane protein BDI_1332 157 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 150009902 Common - putative hydrolase BDI_3319 167 COG0388 COG0388, Predicted amidohydrolase General function prediction only 150007136 Common - 1-deoxy-D-xylulose 5-phosphate reductoisomerase BDI_0480 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 150007222 Common - 3-oxoacyl-[acyl-carrier-protein] synthase BDI_0567 206 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 150007262 Common - hypothetical protein BDI_0607 70 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 150009595 Common leuS leucyl-tRNA synthetase BDI_3008 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 150007467 Common - hypothetical protein BDI_0818 4 None None None 150009265 Common - inositol-1-monophosphatase BDI_2667 203 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 150009228 Pathogen - hypothetical protein BDI_2630 2 COG4639 COG4639, Predicted kinase General function prediction only 150009017 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2413 6 None None None 150006795 Pathogen - putative transcriptional regulator UpxY-like protein BDI_0121 2 COG0250 NusG, Transcription antiterminator Transcription 150008695 Pathogen - hypothetical protein BDI_2085 2 None None None 150010008 Pathogen - hypothetical protein BDI_3427 1 None None None 150007255 Common - hypothetical protein BDI_0600 5 None None None 150007241 Common trpA tryptophan synthase subunit alpha BDI_0586 217 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 150008377 Common - cyclophilin-type peptidyl-prolyl cis-trans isomerase BDI_1751 74 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 150007078 Common - putative transcriptional regulator UpxY-like protein BDI_0421 8 COG0250 NusG, Transcription antiterminator Transcription 150008587 Common - hypothetical protein BDI_1973 2 None None None 150010385 Common - putative nucleotide-sugar dehydrogenase BDI_3822 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 150010246 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3672 37 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010078 Pathogen - putative fimbrilin precursor BDI_3498 1 None None None 150009392 Pathogen - hypothetical protein BDI_2800 2 None None None 150008491 Common - 8-amino-7-oxononanoate synthase BDI_1877 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 150007897 Common - tyrosine type site-specific recombinase BDI_1257 5 None None None 150007029 Common - hypothetical protein BDI_0372 2 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 150006873 Common - peptidyl-dipeptidase BDI_0207 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 150008738 Common - hypothetical protein BDI_2128 14 None None None 150008796 Common - tRNA and rRNA cytosine-C5-methylase BDI_2186 206 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 150010281 Common - hypothetical protein BDI_3710 20 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 150006799 Common - tyrosine-protein kinase BDI_0125 148 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150007385 Pathogen - hypothetical protein BDI_0736 2 None None None 150006917 Common - putative ATPase involved in DNA repair BDI_0253 50 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 150007992 Pathogen - hypothetical protein BDI_1354 3 None None None 150007327 Common - putative two-component regulator sensor kinase BDI_0674 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 150008365 Common - peptidyl-prolyl cis-trans isomerase BDI_1739 130 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 150008756 Pathogen - hypothetical protein BDI_2146 1 None None None 150006827 Common - conserved hypothetical protein, putative glycoprotease BDI_0158 192 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 150008627 Pathogen - hypothetical protein BDI_2013 1 None None None 150010026 Common - hypothetical protein BDI_3445 3 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 150009923 Common - putative ECF-type RNA polymerase sigma factor BDI_3340 38 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009720 Pathogen - hypothetical protein BDI_3135 2 None None None 150009963 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_3381 49 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150008091 Common - hypothetical protein BDI_1455 43 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 150006946 Common - excinuclease ABC subunit B BDI_0282 228 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 150006923 Common - threonine synthase BDI_0259 207 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 150007348 Common - hypothetical protein BDI_0698 6 None None None 150008237 Common - putative dioxygenase BDI_1603 140 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 150010417 Common - glycine betaine-binding protein precursor BDI_3857 69 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 150007542 Pathogen - hypothetical protein BDI_0895 1 None None None 150010257 Common - hypothetical protein BDI_3683 15 None None None 150009788 Common - hypothetical protein BDI_3204 5 COG4758 COG4758, Predicted membrane protein Function unknown 150009727 Common - hypothetical protein BDI_3142 8 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 150008889 Common - acetyltransferase BDI_2284 193 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 150008038 Common - hypothetical protein BDI_1401 99 COG3323 COG3323, Uncharacterized protein conserved in bacteria Function unknown 150007248 Common aspA aspartate ammonia-lyase BDI_0593 216 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 150009045 Pathogen - hypothetical protein BDI_2446 1 None None None 150010120 Common - glycoside hydrolase family 13, candidate alpha-glycosidase BDI_3540 178 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 150007559 Common - alkaline phosphatase, putative BDI_0912 83 COG1785 PhoA, Alkaline phosphatase Inorganic ion transport and metabolism 150008020 Common - putative transport protein, multidrug efflux protein BDI_1383 150 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150010107 Pathogen - hypothetical protein BDI_3527 3 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 150009027 Common - glycoside hydrolase family 95 BDI_2423 18 None None None 150007187 Common - O-sialoglycoprotein endopeptidase BDI_0532 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 150006964 Common - putative LPS biosynthesis related flippase BDI_0300 88 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 150008458 Common - glycosyltransferase family 4 BDI_1842 202 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 150007951 Common - putative endonuclease BDI_1312 52 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 150007680 Pathogen - hypothetical protein BDI_1035 1 None None None 150009360 Pathogen - hypothetical protein BDI_2768 2 None None None 150009824 Common - putative tyrosine protein kinase BDI_3240 166 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 150006745 Common - arginine repressor, transcriptional regulator of arginine metabolism BDI_0071 81 COG1438 ArgR, Arginine repressor Transcription 150008370 Common - putative glycosyltransferase BDI_1744 182 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150009132 Common - hypothetical protein BDI_2533 3 None None None 150008848 Pathogen - hypothetical protein BDI_2238 1 None None None 150006724 Common - glycoside hydrolase family 20, candidate beta-N-acetylhexosaminidase BDI_0050 57 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 150006794 Pathogen - hypothetical protein BDI_0120 1 None None None 150010044 Common - hypothetical protein BDI_3463 3 COG5276 COG5276, Uncharacterized conserved protein Function unknown 150007796 Common - probable NADH-dependent dehydrogenase BDI_1154 91 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150008639 Common - hypothetical protein BDI_2027 2 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 150009524 Pathogen - hypothetical protein BDI_2937 1 None None None 150006678 Common - hypothetical protein BDI_0004 70 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 150007526 Common - putative phage large subunit terminase BDI_0879 18 COG1783 XtmB, Phage terminase large subunit General function prediction only 150007554 Pathogen - hypothetical protein BDI_0907 1 None None None 150009317 Common - putative DNA polymerase III epsilon chain BDI_2719 94 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 150010314 Common - putative dihydrofolate reductase BDI_3748 144 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 150007747 Common - putative outer membrane receptor protein involved in Fe transport BDI_1105 7 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 150010133 Common - hypothetical protein BDI_3555 6 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 150008703 Common - hypothetical protein BDI_2093 5 None None None 150007180 Common - conserved hypothetical protein, putative membrane-bound serine protease BDI_0525 71 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 150010454 Pathogen - hypothetical protein BDI_3894 2 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 150008642 Pathogen - hypothetical protein BDI_2030 2 None None None 150007938 Common - 6-pyruvoyl-tetrahydropterin synthase BDI_1299 87 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 150008313 Common - putative outer membrane protein, probably involved in nutrient binding BDI_1682 68 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150008025 Common - glutaminyl-tRNA synthetase BDI_1388 245 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 150006887 Pathogen - hypothetical protein BDI_0223 2 None None None 150006711 Common - hypothetical protein BDI_0037 2 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 150009040 Common - 3-oxoacyl-[acyl-carrier-protein] synthase III BDI_2436 217 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 150007205 Common - putative capsular polysaccharide biosynthesis glycosyltransferase BDI_0550 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 150008434 Common - glycerol kinase BDI_1816 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 150006758 Pathogen - hypothetical protein BDI_0084 1 None None None 150010270 Common - putative outer membrane protein BDI_3699 157 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 150009330 Common - hypothetical protein BDI_2732 105 COG0393 COG0393, Uncharacterized conserved protein Function unknown 150007650 Pathogen - hypothetical protein BDI_1005 1 None None None 150007773 Pathogen - hypothetical protein BDI_1131 1 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 150008178 Common - hypothetical protein BDI_1544 22 COG0517 COG0517, FOG: CBS domain General function prediction only 150008184 Common - putative choloylglycine hydrolase BDI_1550 55 COG3049 COG3049, Penicillin V acylase and related amidases Cell envelope biogenesis, outer membrane 150008538 Common - thioredoxin BDI_1924 231 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 150006979 Pathogen - hypothetical protein BDI_0315 2 None None None 150008394 Common - putative carbonic anhydrase BDI_1768 43 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 150008066 Common - putative aspartate aminotransferase BDI_1430 153 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 150010335 Common - hypothetical protein BDI_3769 167 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 150007587 Common - carboxynorspermidine decarboxylase BDI_0940 59 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 150007852 Common - hypothetical protein BDI_1212 3 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 150007069 Pathogen - hypothetical protein BDI_0412 2 None None None 150009696 Common - putative outer membrane protein, probably involved in nutrient binding BDI_3111 4 None None None 150009467 Common - glycoside hydrolase family 97 BDI_2880 18 None None None 150008422 Common - acetyl-CoA synthetase BDI_1804 140 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 150007830 Common - putative oxidoreductase BDI_1188 197 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 150009187 Common - putative DNA repair protein BDI_2589 176 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 150010279 Common - vitamin B12 receptor precursor BDI_3708 120 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 150008686 Common - putative outer membrane protein probably involved in nutrient binding BDI_2076 9 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 150009375 Common - putative galactoside O-acetyltransferase BDI_2783 35 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150008188 Pathogen - hypothetical protein BDI_1554 1 None None None 150007822 Common - hypothetical protein BDI_1180 28 None None None 150007927 Pathogen - hypothetical protein BDI_1288 1 None None None 150009855 Common - clostripain-related protein BDI_3271 9 None None None 150010344 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase BDI_3778 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 150009608 Common - glycoside hydrolase family 2, candidate beta-glycosidase BDI_3021 54 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 150006967 Pathogen - hypothetical protein BDI_0303 1 None None None 150009236 Common - putative RNA polymerase ECF-type sigma factor BDI_2638 165 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150006706 Common - acetyltransferase BDI_0032 144 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 150006971 Common - transcriptional regulator BDI_0307 13 None None None 150007642 Pathogen - hypothetical protein BDI_0997 1 None None None 150009877 Common - putative thermophilic glucose-6-phosphate isomerase-like protein BDI_3293 14 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 150009932 Common - carboxy-terminal processing protease precursor BDI_3349 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 150008190 Common - putative transport protein BDI_1556 37 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 150006836 Common - hypothetical protein BDI_0167 30 COG5495 COG5495, Uncharacterized conserved protein Function unknown 150008135 Common - uncharacterized protein, possibly involved in aromatic compounds catabolism BDI_1501 105 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 150009347 Common - hypothetical protein BDI_2755 58 COG1695 COG1695, Predicted transcriptional regulators Transcription 150008540 Pathogen - hypothetical protein BDI_1926 3 None None None 150008865 Common - acetyl-coenzyme A synthetase BDI_2255 222 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 150007709 Common - precorrin-6X reductase/cobalamin biosynthetic protein CbiD BDI_1064 96 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 150008566 Common - two-component system sensor histidine kinase BDI_1952 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 150010420 Common - femAB family protein BDI_3860 26 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 150008955 Common eno phosphopyruvate hydratase BDI_2351 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 150007034 Common - D-mannonate oxidoreductase BDI_0377 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 150010415 Common - hypothetical protein BDI_3855 15 None None None 150008321 Common - putative regulatory protein BDI_1690 3 None None None 150008197 Common - putative endopeptidase BDI_1563 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 150009909 Common - hypothetical protein BDI_3326 9 None None None 150009627 Common - glycosyltransferase family 2 BDI_3041 195 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150008082 Common - ABC-type multidrug transport system, ATPase component BDI_1446 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 150009956 Common - putative fructokinase BDI_3374 165 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 150008471 Common - hypothetical protein BDI_1857 8 None None None 150009106 Common - hypothetical protein BDI_2507 18 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 150009277 Pathogen - putative lipoprotein BDI_2679 2 None None None 150009803 Common - hypothetical protein BDI_3219 35 COG5587 COG5587, Uncharacterized conserved protein Function unknown 150009619 Common - rubrerythrin BDI_3032 77 COG1592 COG1592, Rubrerythrin Energy production and conversion 150010155 Common - phosphoribosylglycinamide formyltransferase BDI_3578 219 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 150006891 Pathogen - hypothetical protein BDI_0227 1 None None None 150008447 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein BDI_1829 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 150007373 Pathogen - hypothetical protein BDI_0724 1 None None None 150007634 Common - pyruvate dehydrogenase BDI_0987 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 150009944 Common - putative transport protein BDI_3362 62 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 150009123 Common - putative outer membrane protein, probably involved in nutrient binding BDI_2524 6 None None None 150007202 Pathogen - hypothetical protein BDI_0547 1 None None None 150008822 Common - hypothetical protein BDI_2212 8 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 150008556 Pathogen - hypothetical protein BDI_1942 2 None None None 150008779 Common - hypothetical protein BDI_2169 9 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 150010494 Common - two-component system sensor histidine kinase, FrrD BDI_3935 223 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 150008117 Common - hypothetical protein BDI_1482 4 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 150010427 Pathogen - hypothetical protein BDI_3867 2 None None None 150009476 Common - putative integrase/transposase BDI_2889 30 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 150010051 Common - putative two-component system sensor histidine kinase BDI_3470 205 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 150009490 Pathogen - hypothetical protein BDI_2903 1 None None None 150010325 Common - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase BDI_3759 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 150010384 Pathogen - hypothetical protein BDI_3821 3 None None None 150010440 Common - hypothetical protein BDI_3880 6 None None None 150008101 Common - hemolysin erythrocyte lysis protein 2 BDI_1465 230 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 150009911 Common - hypothetical protein BDI_3328 14 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 150008213 Common - conserved hypothetical protein, putative prenyltransferase and squalene oxidase BDI_1579 31 COG5360 COG5360, Uncharacterized protein conserved in bacteria Function unknown 150008664 Pathogen - putative lipoprotein BDI_2054 3 None None None 150007713 Common - hypothetical protein BDI_1068 18 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 150008730 Common - hypothetical protein BDI_2120 26 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 150009938 Common - ABC transporter permease protein BDI_3355 198 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 150007871 Pathogen - hypothetical protein BDI_1231 1 None None None 150009114 Pathogen - hypothetical protein BDI_2515 2 None None None 150008526 Pathogen - hypothetical protein BDI_1912 1 None None None 150009243 Pathogen - hypothetical protein BDI_2645 1 None None None 150010505 Pathogen - hypothetical protein BDI_3947 1 None None None 150009485 Common - hypothetical protein BDI_2898 12 None None None 150007485 Common pheS phenylalanyl-tRNA synthetase subunit alpha BDI_0836 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 150009165 Common - putative cytosine/adenosine deaminase BDI_2567 211 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 150009516 Common - glycosyltransferase family 2 BDI_2929 197 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 150008657 Common - putative NADH-dependent dyhydrogenase BDI_2047 118 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007547 Common - putative reverse transcriptase BDI_0900 33 None None None 150009340 Common - putative NADH-dependent dyhydrogenase BDI_2747 108 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 150007071 Common - hypothetical protein BDI_0414 18 None None None 150008749 Pathogen - hypothetical protein BDI_2139 3 None None None 150007751 Common - hypothetical protein BDI_1109 15 None None None 150006845 Pathogen - hypothetical protein BDI_0176 3 None None None 150007406 Common - hypothetical protein BDI_0757 2 None None None 150007647 Pathogen - hypothetical protein BDI_1002 1 None None None 150010239 Common - hypothetical protein BDI_3665 33 None None None 150007504 Common - putative RNA polymerase beta subunit BDI_0856 5 None None None 150008929 Common - RNA polymerase ECF-type sigma factor BDI_2325 72 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 150009274 Common - ribosomal large subunit pseudouridine synthase D BDI_2676 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 150006856 Common - glycerol-3-phosphate cytidylyltransferase BDI_0188 132 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 150008071 Pathogen - hypothetical protein BDI_1435 1 None None None 150007210 Pathogen - hypothetical protein BDI_0555 2 None None None 150009128 Common - putative ATPase BDI_2529 46 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 150008145 Common - hypothetical protein BDI_1511 30 COG5545 COG5545, Predicted P-loop ATPase and inactivated derivatives General function prediction only 150008916 Common - putative integral membrane protein BDI_2312 35 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 150009424 Common - hypothetical protein BDI_2832 26 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 150010468 Common - transcriptional regulator BDI_3908 160 COG1522 Lrp, Transcriptional regulators Transcription 150008772 Common - hypothetical protein BDI_2162 26 COG4186 COG4186, Predicted phosphoesterase or phosphohydrolase General function prediction only