Acidiphilium cryptum JF-5 plasmid pACRY03, complete sequence NC_009469 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 148244049 Nonpathogen - hypothetical protein Acry_3545 2 None None None 148244054 Common - CitB domain protein Acry_3552 17 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 148244005 Nonpathogen - hypothetical protein Acry_3500 2 None None None 148244042 Common - protein of unknown function DUF159 Acry_3538 114 COG2135 COG2135, Uncharacterized conserved protein Function unknown 148244032 Common - conjugation TrbI family protein Acry_3528 59 COG2948 VirB10, Type IV secretory pathway, VirB10 components Intracellular trafficking and secretion 148244025 Common - VIRB2 type IV secretion fmaily protein Acry_3521 5 COG3838 VirB2, Type IV secretory pathway, VirB2 components (pilins) Intracellular trafficking and secretion 148244038 Common - amidohydrolase Acry_3534 165 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 148243997 Nonpathogen - hypothetical protein Acry_3491 1 None None None 148243986 Common - SNO glutamine amidotransferase Acry_3479 85 COG0311 PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis Coenzyme metabolism 148244015 Common - PilT protein domain protein Acry_3511 17 COG3742 COG3742, Uncharacterized protein conserved in bacteria Function unknown 148244040 Common - UMUC domain protein DNA-repair protein Acry_3536 178 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 148244053 Common - hypothetical protein Acry_3549 6 None None None 148244043 Common - hypothetical protein Acry_3539 28 None None None 148244031 Common - Conjugal transfer protein TrbG/VirB9/CagX Acry_3527 41 COG3504 VirB9, Type IV secretory pathway, VirB9 components Intracellular trafficking and secretion 148244026 Common - type IV secretory pathway, VirB3 family protein Acry_3522 7 COG3702 VirB3, Type IV secretory pathway, VirB3 components Intracellular trafficking and secretion 148244000 Common - two component transcriptional regulator, winged helix family Acry_3494 207 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 148244020 Common - protein of unknown function DUF891 Acry_3516 34 COG4679 COG4679, Phage-related protein Function unknown 148244037 Common - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit Acry_3533 57 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 148243987 Common - anaerobic ribonucleoside triphosphate reductase Acry_3480 105 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 148243980 Common - hypothetical protein Acry_3473 4 None None None 148243990 Common - transposase, IS4 family protein Acry_3483 66 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 148243979 Common - hypothetical protein Acry_3472 10 None None None 148244013 Common - Integrase, catalytic region Acry_3509 32 None None None 148243983 Common - peptidase U32 Acry_3476 50 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 148243988 Common - anaerobic ribonucleoside-triphosphate reductase activating protein Acry_3481 85 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 148244019 Common - Cobyrinic acid a,c-diamide synthase Acry_3515 34 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 148243994 Common - potassium-transporting ATPase, A subunit Acry_3488 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 148244008 Common - Antirestriction protein-like protein Acry_3504 45 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 148244002 Common - transposase Tn3 family protein Acry_3496 55 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 148244048 Nonpathogen - hypothetical protein Acry_3544 2 None None None 148244028 Common - type IV secretion system family protein Acry_3524 9 None None None 148243991 Common - IstB domain protein ATP-binding protein Acry_3484 97 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 148244041 Common - hypothetical protein Acry_3537 51 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 148244039 Common - allantoate amidohydrolase Acry_3535 84 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 148244016 Common - Rv0623 family protein transcription factor Acry_3512 6 COG4423 COG4423, Uncharacterized protein conserved in bacteria Function unknown 148243989 Common - transposase, IS4 family protein Acry_3482 34 COG5433 COG5433, Transposase DNA replication, recombination, and repair 148243995 Common - K+-transporting ATPase, B subunit Acry_3489 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 148244007 Common - transposase, IS4 family protein Acry_3502 19 None None None 148244027 Common - type IV secretion/conjugal transfer ATPase, VirB4 family Acry_3523 56 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 148244022 Common - replication protein C Acry_3518 17 None None None 148244017 Common - NERD domain protein Acry_3513 9 None None None 148244012 Common - domain of unknown function DUF1738 Acry_3508 50 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 148243985 Common - pyridoxine biosynthesis protein Acry_3478 87 COG0214 SNZ1, Pyridoxine biosynthesis enzyme Coenzyme metabolism 148243992 Common - Integrase, catalytic region Acry_3485 62 COG4584 COG4584, Transposase and inactivated derivatives DNA replication, recombination, and repair 148244001 Common - hypothetical protein Acry_3495 6 None None None 148244034 Common - type II secretion system protein E Acry_3530 184 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 148244050 Nonpathogen - hypothetical protein Acry_3546 1 None None None 148244046 Common - aldehyde dehydrogenase Acry_3542 47 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 148244021 Common - transcriptional regulator, XRE family Acry_3517 28 COG5606 COG5606, Uncharacterized conserved small protein Function unknown 148243993 Common - transposase, IS204/IS1001/IS1096/IS1165 family protein Acry_3487 46 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 148243978 Common - cytochrome c, class I Acry_3471 57 COG3474 COG3474, Cytochrome c2 Energy production and conversion 148244033 Nonpathogen - hypothetical protein Acry_3529 1 None None None 148244011 Common - phage integrase family protein Acry_3507 172 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148243982 Common - peptidase U32 Acry_3475 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 148244014 Common - IstB domain protein ATP-binding protein Acry_3510 98 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 148244029 Common - TrbL/VirB6 plasmid conjugal transfer protein Acry_3525 5 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 148244047 Nonpathogen - hypothetical protein Acry_3543 1 None None None 148244010 Common - phage integrase family protein Acry_3506 96 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148244036 Common - putative transcriptional regulator, AsnC family Acry_3532 104 COG1522 Lrp, Transcriptional regulators Transcription 148244004 Common - hypothetical protein Acry_3499 5 None None None 148244009 Common - phage integrase family protein Acry_3505 223 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 148244023 Nonpathogen - hypothetical protein Acry_3519 1 None None None 148243998 Nonpathogen - hypothetical protein Acry_3492 3 None None None 148244044 Nonpathogen - hypothetical protein Acry_3540 2 None None None 148244052 Nonpathogen - hypothetical protein Acry_3548 3 None None None 148244003 Common - Resolvase, N-terminal domain Acry_3497 127 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 148244035 Common - TRAG family protein Acry_3531 45 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 148244018 Nonpathogen - hypothetical protein Acry_3514 2 None None None 148243981 Common - hypothetical protein Acry_3474 14 COG3154 COG3154, Putative lipid carrier protein Lipid metabolism 148243984 Common - Endoribonuclease L-PSP Acry_3477 21 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 148243999 Common - osmosensitive K+ channel signal transduction histidine kinase Acry_3493 217 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 148244024 Common - Lytic transglycosylase, catalytic Acry_3520 24 None None None 148244045 Common - helicase, RecD/TraA family Acry_3541 156 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 148244051 Nonpathogen - hypothetical protein Acry_3547 1 None None None 148244006 Common - Resolvase, N-terminal domain Acry_3501 124 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 148244030 Common - VirB8 family protein Acry_3526 21 COG3736 VirB8, Type IV secretory pathway, component VirB8 Intracellular trafficking and secretion 148243996 Common - potassium-transporting ATPase, C subunit Acry_3490 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism