Bradyrhizobium sp. ORS278, complete genome NC_009445 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 146342945 Common - hypothetical protein BRADO6127 49 COG3472 COG3472, Uncharacterized conserved protein Function unknown 146340671 Common - hypothetical protein BRADO3721 2 None None None 146337972 Common - Putative Glyoxalase/bleomycin resistance protein/dioxygenase family protein BRADO0864 39 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146338661 Nonpathogen - hypothetical protein BRADO1593 2 None None None 146337951 Common - putative oxidoreductase, aldo/keto reductase family BRADO0841 200 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146340598 Nonpathogen - hypothetical protein BRADO3643 2 None None None 146343689 Common - putative transposase BRADO6932 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146338391 Nonpathogen - hypothetical protein BRADO1303 1 None None None 146338796 Nonpathogen - putative transcriptional regulator, TetR family BRADO1730 3 COG1309 AcrR, Transcriptional regulator Transcription 146342060 Common - putative O-antigen ligase (RfaL-like) BRADO5200 22 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 146337471 Common - putative transcriptional regulator protein BRADO0314 31 COG1309 AcrR, Transcriptional regulator Transcription 146343264 Common argC N-acetyl-gamma-glutamyl-phosphate reductase (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) BRADO6484 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 146343472 Common coxC cytochrome c oxidase, subunit III BRADO6702 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 146341371 Common - putative transcriptional regulatory protein, LysR family. BRADO4457 190 COG0583 LysR, Transcriptional regulator Transcription 146342458 Nonpathogen - hypothetical protein BRADO5617 1 None None None 146341982 Common - putative bifunctional enzyme with isomerase/decarboxylase activity BRADO5118 177 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146342702 Common amiE acylamide amidohydrolase BRADO5869 66 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146337703 Common prfA peptide chain release factor 1 BRADO0572 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 146337593 Common iorA Isoquinoline 1-oxidoreductase alpha subunit BRADO0449 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146337984 Common - hypothetical protein; putative membrane protein BRADO0876 8 None None None 146337768 Common - putative ABC transporter (substrate binding protein) BRADO0645 70 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340112 Common - putative thiolase BRADO3127 90 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146341242 Nonpathogen - hypothetical protein BRADO4318 1 None None None 146341534 Common - putative ribosomal large subunit pseudouridine synthase RluC-like (23S RNA pseudouridylate synthase) (RNA-uridine isomerase) BRADO4632 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 146338396 Common - putative SAM-dependent methyltransferases BRADO1309 51 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146341001 Common - putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO4072 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343258 Nonpathogen - conserved hypothetical protein; putative Plasmid stabilisation system protein BRADO6478 1 COG3668 ParE, Plasmid stabilization system protein General function prediction only 146341553 Common exbB biopolymer transport protein ExbB; uptake of enterobactin, tonB-dependent uptake of B colicins BRADO4651 121 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 146337976 Common - Putative Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) BRADO0868 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146341616 Common moaA molybdenum cofactor biosynthesis protein A BRADO4718 199 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 146341715 Common - putative oxidoreductase; NAD(FAD)-dependent dehydrogenases BRADO4820 22 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146338021 Common citA citrate-proton symporter (Citrate transporter) (Citrate carrier protein) BRADO0914 137 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146337960 Nonpathogen - hypothetical protein BRADO0852 1 None None None 146338754 Common hupF Hydrogenase expression/formation protein HupF BRADO1688 17 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 146338573 Common - hypothetical protein BRADO1494 28 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 146338358 Common gvpN Gas vesicle synthesis protein N BRADO1267 59 COG0714 COG0714, MoxR-like ATPases General function prediction only 146340993 Common - putative urease accessory protein ureD BRADO4064 17 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 146342021 Common - hypothetical protein BRADO5158 2 None None None 146338726 Common rbcL ribulose bisophosphate carboxylase BRADO1659 67 COG1850 RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit Carbohydrate transport and metabolism 146339063 Common rnhB Ribonuclease HII BRADO2017 214 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 146341775 Common - hypothetical protein BRADO4894 4 None None None 146342202 Common - putative PhnI protein, phosphonate metabolism BRADO5354 45 COG3626 PhnI, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 146343143 Common - putative General secretion pathway protein L, GspL BRADO6341 13 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 146338152 Common - two-component response regulator BRADO1049 95 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 146339285 Common - Putative cytochrome c; putative signal peptide BRADO2261 57 COG2863 COG2863, Cytochrome c553 Energy production and conversion 146338863 Common - hypothetical protein BRADO1802 115 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146342729 Common fliF flagellar MS-ring protein BRADO5899 127 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 146341165 Common - putative Acetamidase/Formamidase family protein BRADO4237 65 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146340404 Common - hypothetical protein BRADO3437 28 COG3652 COG3652, Predicted outer membrane protein Function unknown 146343087 Nonpathogen - hypothetical protein BRADO6282 2 None None None 146338389 Nonpathogen - putative General secretion pathway protein M BRADO1301 4 None None None 146338835 Nonpathogen - hypothetical protein BRADO1772 1 None None None 146343231 Common clpB Chaperone BRADO6450 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 146339480 Common - putative beta-lactamase BRADO2469 138 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146340212 Common - Hydantoin utilization protein A BRADO3230 117 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337311 Common - hypothetical protein BRADO0142 67 COG0730 COG0730, Predicted permeases General function prediction only 146343776 Common - hypothetical protein BRADO7023 5 None None None 146338908 Common - putative thiosulfate sulfurtransferase; Rhodanese-like domain/ankyrin repeat domain protein BRADO1848 65 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 146337554 Common - putative oxidoreductase (YgfF), NAD(P)-binding domain BRADO0408 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339002 Common - putative transcriptional regulator, XRE family BRADO1951 52 COG3800 COG3800, Predicted transcriptional regulator General function prediction only 146337204 Common - putative beta-lactamase BRADO0030 119 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146338186 Common - putative glucose dehydrogenase precursor BRADO1084 124 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 146341733 Nonpathogen - hypothetical protein BRADO4840 2 None None None 146340035 Common - putative short-chain dehydrogenase/reductase SDR BRADO3043 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342047 Common - putative DegT/DnrJ/EryC1/StrS aminotransferase protein family BRADO5187 194 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 146341911 Common - conserved hypothetical protein; putative NAD(P)-binding protein BRADO5046 59 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 146341090 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4161 3 None None None 146340204 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3222 3 None None None 146341945 Common fdxB 2Fe-2S ferredoxin (FdII) BRADO5081 70 COG0633 Fdx, Ferredoxin Energy production and conversion 146341202 Nonpathogen - hypothetical protein BRADO4276 1 None None None 146343888 Common - Putative carboxymethylenebutenolidase (Dienelactone hydrolase) (DLH) BRADO7139 101 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146342671 Common mobB molybdopterin-guanine dinucleotide biosynthesis protein B, mobB BRADO5838 103 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 146341430 Common - putative response regulator in two-component regulatory system (CheY-like protein) BRADO4521 224 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 146342614 Common - putative periplasmic-binding protein; putative amino-acid periplasmic-binding protein BRADO5778 46 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146338527 Common - cytochrome P-450 BRADO1446 67 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146343366 Common - conserved hypothetical protein with two TPR repeat domains; putative exported protein BRADO6594 22 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 146340464 Common - putative citrate utilization protein B (citB); putative membrane protein BRADO3504 20 None None None 146341485 Common eutC Ethanolamine ammonia-lyase light chain (Ethanolamine ammonia-lyase small subunit) BRADO4578 53 COG4302 EutC, Ethanolamine ammonia-lyase, small subunit Amino acid transport and metabolism 146341548 Common - conserved hypothetical protein; putative Glutathione-dependent formaldehyde-activating (GFA) BRADO4646 68 COG3791 COG3791, Uncharacterized conserved protein Function unknown 146340721 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3774 4 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146339337 Common - putative acyl-CoA dehydrogenase BRADO2318 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146337781 Common - Putative phytoene dehydrogenase and related proteins; putative membrane protein BRADO0659 83 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 146341329 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO4411 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146341505 Common - putative ABC transporter, permease protein (fragment) BRADO4600 186 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342523 Common macA putative accessory protein to ABC-type macrolide transport protein MacB BRADO5685 171 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146339243 Common - putative Glycosyl transferase, group 2 family protein BRADO2209 90 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146341471 Common - putative magnesium transporter MgtE-like (divalent cation transporter Mg2+/Ni2+/Co2+) BRADO4563 166 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 146341897 Common fliP flagellar biosynthesis protein FliP BRADO5031 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 146337988 Nonpathogen - Conserved hypothetical protein; Putative membrane protein; putative permease BRADO0880 4 None None None 146339760 Common - Putative tRNA/rRNA methyltransferase BRADO2760 157 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 146343013 Nonpathogen - hypothetical protein BRADO6198 1 None None None 146343390 Common - putative ABC transporter, permease protein BRADO6619 148 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146343752 Nonpathogen - hypothetical protein BRADO6999 3 None None None 146341097 Common - Putative glyoxalase I family protein; putative Methylmalonyl-CoA epimerase BRADO4168 90 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 146339839 Common - hypothetical protein BRADO2840 33 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 146337751 Common - putative dipeptide transport system permease protein BRADO0626 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338735 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1668 1 None None None 146337346 Common - hypothetical protein BRADO0179 36 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 146337817 Common - putative inner membrane protein (UPF0053 family) with 2 CBS domains BRADO0697 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 146341877 Nonpathogen - putative intracellular septation protein BRADO5009 6 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 146341220 Common - putative insertion element (IS) transposase BRADO4296 71 COG3293 COG3293, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342094 Nonpathogen - hypothetical protein BRADO5237 2 None None None 146342586 Common - putative permease of the major facilitator superfamily (MFS); putative Mutlidrug resistance protein BRADO5749 27 None None None 146339197 Common - conserved hypothetical protein; putative endoglucanase and lipoprotein domain BRADO2157 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 146340090 Common - Putative amidohydrolase family protein BRADO3099 158 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 146340182 Common - putative transcriptional regulator, Crp/Fnr family BRADO3198 113 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146337747 Common namA NADPH dehydrogenase BRADO0620 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 146341439 Common nadB L-aspartate oxidase BRADO4530 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 146337688 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase BRADO0556 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 146337760 Common rpmB 50S ribosomal protein L28 BRADO0635 147 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 146338321 Common - putative nitrate reductase, nirV-like; putative signal peptide. BRADO1226 80 COG1262 COG1262, Uncharacterized conserved protein Function unknown 146340916 Common - hypothetical protein BRADO3986 16 COG3514 COG3514, Uncharacterized protein conserved in bacteria Function unknown 146342411 Common - Putative NADPH-dependent FMN reductase; ArsH-like protein BRADO5570 64 COG0431 COG0431, Predicted flavoprotein General function prediction only 146342644 Common zwf glucose-6-phosphate 1-dehydrogenase BRADO5811 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 146343249 Common ftsX Cell division ABC transporter (membrane component) BRADO6469 55 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 146339442 Common - putative fused ATP-binding/permease protein BRADO2428 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 146341322 Common ddpC putative dipeptide ABC transporter, permease protein BRADO4404 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146337656 Common - putative penicillin-binding protein pbpC/mrcB-like BRADO0522 204 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 146337828 Common - putative transcriptional regulatory protein (GntR family, N-term) with a PLP-dependent aminotransferase domain (C-term) BRADO0709 177 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 146343821 Nonpathogen - hypothetical protein, predicted (Trans)glycosidase domain BRADO7070 2 None None None 146339015 Common - putative MoxR family protein. BRADO1964 173 COG0714 COG0714, MoxR-like ATPases General function prediction only 146342180 Nonpathogen - hypothetical protein BRADO5330 1 None None None 146340414 Common - hypothetical protein BRADO3450 15 COG4991 COG4991, Uncharacterized protein with a bacterial SH3 domain homologue Function unknown 146342909 Nonpathogen - hypothetical protein BRADO6090 3 None None None 146342326 Common - putative cytochrome c like protein BRADO5481 8 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146342651 Common glgX glycosyl hydrolase (glycogen debranching enzyme) BRADO5818 152 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 146338205 Nonpathogen - hypothetical protein BRADO1104 6 COG5509 COG5509, Uncharacterized small protein containing a coiled-coil domain Function unknown 146343724 Common - Putative Adenylate/Guanylate cyclase BRADO6971 102 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146343760 Common - Putative transcriptional regulator, Crp/Fnr family BRADO7007 37 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146339490 Common - hypothetical protein BRADO2479 35 COG3970 COG3970, Fumarylacetoacetate (FAA) hydrolase family protein General function prediction only 146338157 Common - putative permease BRADO1054 168 COG0628 PerM, Predicted permease General function prediction only 146339748 Nonpathogen - hypothetical protein BRADO2748 2 None None None 146338855 Common - short chain dehydrogenase BRADO1794 235 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337549 Common mdh malate dehydrogenase BRADO0403 192 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 146343294 Common - putative chaperone protein (yegD) BRADO6516 233 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 146338941 Common - putative gamma-glutamyltranspeptidase BRADO1881 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 146337540 Common - hypothetical protein BRADO0394 33 COG5429 COG5429, Uncharacterized secreted protein Function unknown 146339747 Common - Conserved Hypothetical protein; putative Adenylate/Guanylate cyclase (fragment) BRADO2747 81 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146338090 Common - putative dehydrogenase/reductase SDR family member BRADO0986 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339647 Common - hypothetical protein BRADO2640 20 None None None 146338565 Common - hypothetical protein BRADO1486 24 COG3766 COG3766, Predicted membrane protein Function unknown 146340772 Common - Putative deoxyribonuclease (ycfH) BRADO3830 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 146342167 Nonpathogen - hypothetical protein BRADO5317 2 None None None 146338844 Nonpathogen - hypothetical protein BRADO1781 3 None None None 146341936 Common - hypothetical protein BRADO5071 11 COG1434 COG1434, Uncharacterized conserved protein Function unknown 146340980 Common - hypothetical protein BRADO4051 6 COG5028 COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 Intracellular trafficking and secretion 146343160 Common - putative divalent cation transporter, CorA-like BRADO6358 52 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 146341236 Common - putative dehydratase (MaoC-like) BRADO4312 33 COG2030 MaoC, Acyl dehydratase Lipid metabolism 146338995 Nonpathogen - hypothetical protein BRADO1943 3 None None None 146339030 Common - conserved hypothetical protein; ankyrin-repeat protein BRADO1979 108 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 146338064 Common - hypothetical protein BRADO0959 16 None None None 146341966 Common - conserved hypothetical protein; putative signal peptide BRADO5102 11 COG3212 COG3212, Predicted membrane protein Function unknown 146338773 Common - Putative Quinoprotein ethanol dehydrogenase BRADO1707 60 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146343448 Common - putative hydrolase BRADO6677 158 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146339535 Common paaI phenylacetic acid degradation protein with thioesterase/thiol ester dehydrase-isomerase domain BRADO2525 74 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146341765 Nonpathogen - conserved hypothetical protein; putative flagellar basal-body protein flbY BRADO4882 2 None None None 146340743 Common - putative carboxylase BRADO3798 98 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 146341986 Common - hypothetical protein BRADO5122 12 COG3619 COG3619, Predicted membrane protein Function unknown 146337466 Common - hypothetical protein BRADO0309 8 None None None 146340231 Common - putative Carboxyvinyl-carboxyphosphonate phosphorylmutase BRADO3250 110 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 146341681 Common - putative Transcriptional regulatory protein, AraC/XylS family BRADO4786 126 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146343336 Common - hypothetical protein BRADO6562 121 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 146339651 Common - Hypothetical protein, Putative elongator protein 3/MiaB/NifB BRADO2644 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 146337625 Common - putative recombinase BRADO0490 47 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 146338437 Common dnaG DNA primase BRADO1353 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 146339214 Nonpathogen - hypothetical protein BRADO2178 1 None None None 146338367 Nonpathogen - putative gas vesicle synthesis protein, GvpF/L-like BRADO1276 5 None None None 146341979 Common - putative Metapyrocatechase (MPC) (CatO2ase) (Catechol 2,3-dioxygenase) BRADO5115 46 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 146339061 Common xfp putative phosphoketolase BRADO2015 65 COG3957 COG3957, Phosphoketolase Carbohydrate transport and metabolism 146337353 Common - conserved hypothetical protein; putative signal peptide BRADO0186 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 146341111 Common - Conserved Hypothetical protein; putative methyltransferase, FkbM family BRADO4182 21 None None None 146340967 Common - putative ATPase family protein BRADO4038 89 COG2607 COG2607, Predicted ATPase (AAA+ superfamily) General function prediction only 146342911 Common xseA exodeoxyribonuclease VII large subunit BRADO6092 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 146342191 Common qor Quinone oxidoreductase (NADPH:quinone reductase) BRADO5342 181 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146340738 Common - putative nitrate transporter component, nrtA BRADO3792 75 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146343861 Common - putative acyl-CoA dehydrogenase BRADO7111 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146343180 Nonpathogen - hypothetical protein BRADO6381 1 None None None 146341755 Common - Putative NADH dehydrogenase/NAD(P)H nitroreductase BRADO4872 36 COG0778 NfnB, Nitroreductase Energy production and conversion 146337844 Common mepA penicillin-insensitive murein endopeptidase BRADO0725 38 COG3770 MepA, Murein endopeptidase Cell envelope biogenesis, outer membrane 146339394 Common - Protocatechuate 4,5-dioxygenase (4,5-PCD), alpha chain BRADO2379 13 None None None 146339585 Common - acyl-CoA synthetase BRADO2576 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339051 Common mutY adenine glycosylase mutY BRADO2005 228 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 146339402 Common - putative transcriptional regulator, MarR family. BRADO2387 74 COG1846 MarR, Transcriptional regulators Transcription 146340600 Nonpathogen - hypothetical protein; putative tail assembly protein homolog. BRADO3645 3 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 146342294 Common nifA Mo/Fe nitrogenase specific transcriptional regulator, NifA BRADO5449 172 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 146343432 Nonpathogen - hypothetical protein; putative secreted protein BRADO6661 1 None None None 146340461 Common accB acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit BRADO3501 190 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 146339277 Common - putative transcriptional regulatory protein, AraC family BRADO2252 67 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146342699 Common ureE urease accessory protein UreE BRADO5866 8 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 146343758 Common - conserved hypothetical protein; putative flagellin C-ter domain BRADO7005 17 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 146343274 Nonpathogen - hypothetical protein BRADO6494 5 None None None 146340445 Common - putative dehdyrogenase BRADO3485 217 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339325 Common dctD C4-dicarboxylate transport transcriptional regulatory protein (response regulator in two-component reguatory system). BRADO2304 192 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146341153 Common - Putative Cytochrome oxidase assembly protein; cox15-like protein BRADO4225 65 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 146341584 Common kup low affinity potassium transporter (Kup family) BRADO4685 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 146343112 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6309 2 COG5591 COG5591, Uncharacterized conserved protein Function unknown 146341882 Common - putative dehydratase with a MaoC-like domain BRADO5015 76 COG2030 MaoC, Acyl dehydratase Lipid metabolism 146341890 Common flhB flagellar biosynthesis protein FlhB BRADO5024 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 146339409 Common - CLC-type chloride channel protein BRADO2394 110 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 146338028 Common adh Alcohol dehydrogenase BRADO0921 213 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 146338923 Common - Putative urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor BRADO1863 91 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338331 Common - putative conjugal transfer protein; TraA BRADO1239 117 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 146339702 Common ibpA small heat shock protein, HSP20-like chaperone BRADO2699 73 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 146342277 Common - hypothetical protein BRADO5431 32 COG3785 COG3785, Uncharacterized conserved protein Function unknown 146338306 Nonpathogen - hypothetical protein BRADO1210 1 None None None 146343202 Common - putative replication protein BRADO6409 33 COG5534 COG5534, Plasmid replication initiator protein DNA replication, recombination, and repair 146337377 Common - hypothetical protein; putative signal peptide BRADO0210 10 None None None 146340298 Common - putative zinc-containing alcohol dehydrogenase family BRADO3321 201 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 146343806 Nonpathogen - hypothetical protein BRADO7055 2 None None None 146338318 Common atoD acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit BRADO1223 97 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 146341390 Nonpathogen - hypothetical protein BRADO4477 1 None None None 146339846 Common livK high-affinity branched-chain amino acid ABC transporter (substrate-binding protein) BRADO2848 148 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338862 Common - putative D-lactate dehydrogenase BRADO1801 193 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146340130 Common - putative amino acid processing enzyme-related protein (aldolase or racemase) BRADO3145 69 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 146342890 Common - putative Zn-dependent protease BRADO6070 202 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 146339112 Common - putative glycosyltransferase protein BRADO2066 51 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146338243 Common ruvB Holliday junction DNA helicase B BRADO1147 233 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 146338803 Common - conserved hypothetical protein; putative oxidoreductase (FAD binding) BRADO1737 29 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146342434 Common - Putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO5593 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146341658 Common - putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like) BRADO4762 105 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146343449 Nonpathogen - hypothetical protein containing two histidine-rich domains BRADO6678 1 None None None 146343788 Common - Putative Toxin secretion ABC transporter (ATP-binding and membrane protein); hlyB-like protein BRADO7036 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 146337837 Common - putative intradiol ring-cleavage dioxygenase BRADO0718 37 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 146339907 Common - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase BRADO2911 143 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 146340896 Common - hypothetical protein BRADO3962 21 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 146339309 Common - hypothetical protein BRADO2285 40 COG3002 COG3002, Uncharacterized protein conserved in bacteria Function unknown 146339919 Common - putative ABC transporter (substrate-binding protein); putative exported protein BRADO2923 188 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146338742 Common pstA high-affinity phosphate transport protein (ABC superfamily, membrane) BRADO1676 222 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 146338013 Common - Putative oligopeptide ABC transporter (ATP-binding protein) BRADO0906 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146340345 Common - putative ErfK/YbiS/YcfS/YnhG family protein; putative signal peptide BRADO3372 35 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146339730 Common - putative Two-component transcriptional regulator BRADO2728 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146341034 Common - putative transcriptional regulatory protein with HTH domain. BRADO4105 56 COG1813 COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 Transcription 146340641 Nonpathogen - hypothetical protein BRADO3689 1 None None None 146342997 Common - Putative Spermidine/putrescine ABC transpoter (permease protein) BRADO6181 226 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146341063 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase BRADO4134 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 146343541 Common - putative restriction endonuclease-like BRADO6777 46 COG2852 COG2852, Uncharacterized protein conserved in bacteria Function unknown 146337432 Common - hypothetical protein BRADO0270 75 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146339958 Common - Conserved hypothetical protein; putative Patatin-like phospholipase domain BRADO2962 120 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 146343624 Common - Putative permease of the Major Facilitator Superfamily BRADO6863 114 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146339550 Common - putative ABC transporter permiase component BRADO2541 165 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146340256 Nonpathogen - hypothetical protein; putative signal peptide BRADO3277 6 COG1695 COG1695, Predicted transcriptional regulators Transcription 146337869 Common rkpK UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) BRADO0754 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 146341995 Common - putative Transcriptional regulator, AraC/XylS family BRADO5131 71 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146338105 Common - Cytochrome c homolog BRADO1001 54 COG3474 COG3474, Cytochrome c2 Energy production and conversion 146340357 Nonpathogen - putative Acetyltransferase (GNAT) family BRADO3385 6 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146341870 Nonpathogen - hypothetical protein; putative signal peptide BRADO5002 1 None None None 146339474 Common - enoyl-CoA hydratase BRADO2462 182 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146342478 Nonpathogen - hypothetical protein BRADO5638 2 None None None 146340843 Common - conserved hypothetical protein; putative oxidoreductase (with FAD/NAD(P)-binding domain) BRADO3906 68 COG2907 COG2907, Predicted NAD/FAD-binding protein General function prediction only 146339080 Common ppdK pyruvate phosphate dikinase BRADO2034 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 146341126 Common clpX ATP-dependent protease ATP-binding subunit BRADO4197 230 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 146337224 Common - hypothetical protein BRADO0050 162 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 146342635 Common - putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (korC-like) BRADO5800 188 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 146339946 Nonpathogen - hypothetical protein BRADO2950 1 None None None 146340295 Nonpathogen - hypothetical protein; putative signal peptide BRADO3318 3 None None None 146339487 Common nasA nitrate reductase, large subunit BRADO2476 195 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 146339739 Common - Putative methyl-accepting chemotaxis protein BRADO2737 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340243 Common - hypothetical protein BRADO3263 4 None None None 146342691 Nonpathogen - hypothetical protein BRADO5858 1 None None None 146337888 Common - putative Methyl-accepting chemotaxis protein BRADO0773 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341174 Common - putative isochorismatase family protein BRADO4247 132 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146342902 Common - putative hydrolase BRADO6083 103 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146340782 Common - putative branched-chain amino acid ABC transporter (substrate-binding protein) BRADO3840 133 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340758 Common - ABC transporter permease protein BRADO3815 189 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146338268 Common - Putative TonB protein BRADO1172 10 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 146338705 Nonpathogen bchF 2-vinyl bacteriochlorophyllide hydratase BRADO1638 14 None None None 146339310 Common - putative transcription repair coupling factor BRADO2286 214 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 146340506 Common - conserved hypothetical protein; putative Diguanylate-cyclase (DGC) or GGDEF domain BRADO3548 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146342737 Common - putative NAD(P)H-flavin oxidoreductase containing a FMN-binding domain BRADO5909 126 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 146338349 Common - putative Chloride peroxidase BRADO1257 9 None None None 146339221 Common - hypothetical protein BRADO2186 16 None None None 146339232 Nonpathogen - hypothetical protein BRADO2198 12 COG4627 COG4627, Uncharacterized protein conserved in bacteria Function unknown 146338402 Common - ATPase, ParA type BRADO1316 85 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146340791 Common - conserved hypothetical protein; putative ExsB BRADO3849 171 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 146337886 Common fmt methionyl-tRNA formyltransferase BRADO0771 215 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 146338669 Common hutC histidine utilization repressor, transcriptional regulatory protein GntR family BRADO1601 114 COG2188 PhnF, Transcriptional regulators Transcription 146339514 Common yliC ABC transporter permease protein; putative dipeptide transport protein BRADO2504 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338269 Common tolB Protein tolB precursor BRADO1173 151 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 146337378 Common hslV ATP-dependent protease peptidase subunit BRADO0211 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 146342003 Common cycF Cytochrome c, class II BRADO5139 18 COG3909 COG3909, Cytochrome c556 Energy production and conversion 146337758 Nonpathogen - hypothetical protein BRADO0633 1 None None None 146342145 Common - putative transcriptional regulator, GntR Family BRADO5294 138 COG1802 GntR, Transcriptional regulators Transcription 146342259 Common - hypothetical protein BRADO5413 6 None None None 146338501 Common gst1 glutathione S-transferase BRADO1419 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146338403 Nonpathogen - hypothetical protein BRADO1317 1 None None None 146341729 Common - conserved hypothetical protein; putative deacetylase BRADO4834 32 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 146340930 Common - oxydo-reductase, aldo/keto reductase family BRADO4001 204 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146340846 Common cysB cysteine synthase A BRADO3909 221 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 146343382 Common - putative zinc-dependent alcohol dehydrogenase (oxidoreductase); putative L-iditol 2-dehydrogenase BRADO6611 208 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 146338440 Common - hypothetical protein BRADO1356 2 None None None 146341397 Nonpathogen - hypothetical protein BRADO4487 4 None None None 146338882 Common cheY Chemotaxis protein cheY BRADO1821 222 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146341640 Common - conserved hypothetical protein; putative secreted protein BRADO4743 44 COG3577 COG3577, Predicted aspartyl protease General function prediction only 146338286 Common - conserved hypothetical protein; putative signal peptide BRADO1190 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 146341477 Common - putative amidase BRADO4570 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146338548 Common - hypothetical protein BRADO1468 28 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 146341796 Common - Putative threonine-phosphate decarboxylase BRADO4915 218 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 146342589 Common - putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain BRADO5752 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146343673 Common - conserved hypothetical protein; putative NUDIX family protein BRADO6916 20 COG4119 COG4119, Predicted NTP pyrophosphohydrolase DNA replication, recombination, and repair / General function prediction only 146343882 Common - Putative Cytochrome P450 family protein BRADO7133 70 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146338954 Common - putative hydrolase BRADO1897 152 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146339004 Nonpathogen - hypothetical protein BRADO1953 4 None None None 146339347 Common - hypothetical protein BRADO2328 122 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146339547 Common - hypothetical protein BRADO2538 41 COG4336 COG4336, Uncharacterized conserved protein Function unknown 146337783 Common - Hypothetical protein; putative permease of the major facilitator superfamily; putative membrane protein BRADO0661 21 COG4262 COG4262, Predicted spermidine synthase with an N-terminal membrane domain General function prediction only 146342124 Common - putative Formyl-CoA transferase BRADO5270 117 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146339602 Common - putative 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like. BRADO2594 29 COG3232 HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase Amino acid transport and metabolism 146337614 Nonpathogen - hypothetical protein BRADO0476 1 None None None 146343348 Common - putative ABC-type branched-chain amino acid transport system, periplasmic component BRADO6575 92 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339367 Common - putative transcriptional regulator BRADO2348 137 COG1733 COG1733, Predicted transcriptional regulators Transcription 146338447 Nonpathogen - hypothetical protein BRADO1363 2 None None None 146343311 Common - hypothetical protein BRADO6535 12 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 146343816 Common - putative transposase BRADO7065 14 None None None 146338191 Common galU glucose-1-phosphate uridylyltransferase BRADO1089 232 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 146343415 Common - hypothetical protein; putative P-loop ATPase (COG4928) BRADO6644 22 COG4928 COG4928, Predicted P-loop ATPase General function prediction only 146343740 Common - hypothetical protein BRADO6987 74 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 146338533 Common - hypothetical protein BRADO1452 135 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146342115 Common gmd GDP-mannose 4,6-dehydratase (GDP-D-mannose dehydratase) BRADO5260 220 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 146341241 Common - indolepyruvate ferredoxin oxidoreductase BRADO4317 90 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 146343033 Common - putative Adenylate cyclase BRADO6221 59 COG5616 COG5616, Predicted integral membrane protein Function unknown 146339866 Common - putative transcriptional regulatory protein, TetR family. BRADO2868 92 COG1309 AcrR, Transcriptional regulator Transcription 146342266 Common nifB Nitrogenase FeMo cofactor biosynthesis protein NifB BRADO5420 72 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 146339431 Common - hypothetical protein BRADO2417 37 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146342743 Common - Putative periplasmic nitrate reductase NapD BRADO5915 14 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 146343103 Common - hypothetical protein BRADO6299 104 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146343477 Common coxB cytochrome c oxidase, subunit II BRADO6707 158 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 146342936 Nonpathogen - hypothetical protein BRADO6117 3 None None None 146339089 Common - conserved hypothetical protein; putative membrane protein; putative MSF permease BRADO2043 16 COG5373 COG5373, Predicted membrane protein Function unknown 146340593 Nonpathogen - hypothetical protein BRADO3638 1 None None None 146343004 Common - Putative transcriptional regulatory protein, LysR family BRADO6189 147 COG0583 LysR, Transcriptional regulator Transcription 146339135 Common - putative sensor histidine kinase with multiple PAS domains BRADO2089 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 146337425 Nonpathogen - hypothetical protein BRADO0263 1 None None None 146343587 Nonpathogen - hypothetical protein; putative RTX toxins and related Ca2+-binding proteins domain BRADO6825 1 None None None 146338298 Common - hypothetical protein BRADO1202 12 None None None 146339035 Common - putative carboxymethylenebutenolidase BRADO1986 110 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146338683 Common crtE Geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (Farnesyltranstransferase) BRADO1615 239 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 146339890 Common groEL chaperonin GroEL BRADO2892 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 146339436 Common - hypothetical protein BRADO2422 75 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146339855 Common - putative carbon-monoxide dehydrogenase small subunit, coxS-like protein BRADO2857 121 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146338508 Nonpathogen - hypothetical protein BRADO1426 4 None None None 146337805 Common maiA Maleylacetoacetate isomerase, MAAI (Glutathione S-transferase zeta 1, GSTZ1-1) BRADO0684 91 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146343038 Nonpathogen - hypothetical protein; putative signal peptide BRADO6226 1 None None None 146338475 Common - ABC transporter; periplasmic subunit, putative sugar-binding protein BRADO1392 108 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146340300 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase BRADO3323 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 146338966 Common - putative ATP-binding protein of sugar ABC transporter BRADO1910 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146339111 Nonpathogen - conserved hypothetical protein; putative glycosyltransferase BRADO2065 10 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 146342531 Common - putative phosphatidylserine decarboxylase (psd-like) BRADO5693 94 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 146341272 Common - putative Ferredoxin--NAD(+) reductase; putative phenol hydroxylase (Phenol 2-monooxygenase P5 component) BRADO4349 176 COG2871 NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF Energy production and conversion 146337557 Common - conserved hypothetical protein, putative membrane protein BRADO0411 14 None None None 146341468 Nonpathogen - hypothetical protein BRADO4560 8 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 146339755 Common - Putative Copper resistance protein, copC family BRADO2755 6 COG2372 CopC, Uncharacterized protein, homolog of Cu resistance protein CopC General function prediction only 146341858 Nonpathogen - hypothetical protein BRADO4990 1 None None None 146338139 Common - Putative urease accessory protein UreD BRADO1036 79 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 146339915 Common - putative ABC transporter (ATP-binding protein); putative dipeptide/oligopeptide/nickel transporter BRADO2919 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146339058 Common moaB Molybdenum cofactor biosynthesis protein B BRADO2012 113 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 146342067 Common galE UDP-glucose 4-epimerase BRADO5207 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 146342823 Common - hypothetical protein BRADO6002 181 COG1496 COG1496, Uncharacterized conserved protein Function unknown 146338795 Common - Putative component of multidrug efflux system (RND family) BRADO1729 161 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146343692 Nonpathogen - hypothetical protein BRADO6935 1 None None None 146339207 Common - putative enoyl-CoA hydratase BRADO2169 149 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146340323 Common cspA Cold shock protein, DNA binding BRADO3346 178 COG1278 CspC, Cold shock proteins Transcription 146343171 Nonpathogen - hypothetical protein BRADO6371 1 None None None 146343209 Common - putative NAD-dependent aldehyde dehydrogenase; Probable coniferyl aldehyde dehydrogenase (CALDH) BRADO6419 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146340497 Common nifS Cysteine desulfurase (Nitrogenase metalloclusters biosynthesis protein nifS) BRADO3539 235 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 146339636 Common - putative phytoene dehydrogenase BRADO2629 38 COG3349 COG3349, Uncharacterized conserved protein Function unknown 146340394 Nonpathogen - hypothetical protein BRADO3427 1 None None None 146342331 Common adhC Alcohol dehydrogenase class III (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) (GSH-FDH) BRADO5486 206 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 146342468 Common - putative ABC transporter (ATP binding protein) BRADO5627 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146340803 Common - conserved hypothetical protein; putative exported protein; putative hydrolase BRADO3862 43 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146340234 Common - conserved hypothetical protein; putative transcriptional regulatory protein. BRADO3253 37 COG1510 COG1510, Predicted transcriptional regulators Transcription 146341999 Common - putative Transcriptional regulatory protein, AraC/XylS family BRADO5135 38 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146342659 Common kdpE response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) BRADO5826 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146337773 Nonpathogen - hypothetical protein BRADO0650 1 None None None 146340572 Nonpathogen - hypothetical protein BRADO3616 1 None None None 146339933 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2937 6 None None None 146342757 Nonpathogen - hypothetical protein; putative signal peptide BRADO5931 1 None None None 146340124 Common - enoyl-CoA hydratase BRADO3139 138 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146337341 Common rph ribonuclease PH BRADO0173 180 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 146341275 Nonpathogen - hypothetical protein BRADO4352 1 None None None 146343375 Common - conserved hypothetical protein; putative thioesterase (superfamily) BRADO6604 21 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146342012 Common - conserved hypothetical protein; putative signal peptide BRADO5149 33 COG5429 COG5429, Uncharacterized secreted protein Function unknown 146342421 Common - hypothetical protein BRADO5580 14 None None None 146337381 Common hisH imidazole glycerol phosphate synthase subunit HisH BRADO0214 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 146339048 Common - conserved hypothetical protein; putative signal peptide; twin-arginine translocation signal domain protein BRADO2001 91 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 146342973 Common - conserved hypothetical protein; putative signal peptide; putative yiaA/B two helix domain BRADO6156 14 COG4298 COG4298, Uncharacterized protein conserved in bacteria Function unknown 146341123 Common - Putative cyclic nucleotide binding protein BRADO4194 34 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146342303 Common - putative two-component sensor histidine kinase BRADO5458 111 COG3851 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific Signal transduction mechanisms 146339897 Common - conserved hypothetical protein; putative membrane protein; putative permease of the major facilitator superfamily BRADO2899 129 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146342580 Nonpathogen - hypothetical protein BRADO5743 3 None None None 146337321 Common nth endonuclease III DNA-(apurinic or apyrimidinic site) lyase BRADO0152 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 146339621 Common - beta amino acid--pyruvate transaminase BRADO2614 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 146340615 Nonpathogen - hypothetical protein BRADO3660 1 None None None 146343051 Common - Putative Arylamine N-acetyltransferase BRADO6242 45 COG2162 NhoA, Arylamine N-acetyltransferase Secondary metabolites biosynthesis, transport, and catabolism 161353769 Common ilvD dihydroxy-acid dehydratase BRADO2308 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146341120 Nonpathogen - hypothetical protein BRADO4191 2 None None None 146341137 Nonpathogen - hypothetical protein; putative signal peptide BRADO4208 4 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146338046 Common - Putative autoinducer (acylhomoserine lactone) synthase BRADO0941 23 COG3916 LasI, N-acyl-L-homoserine lactone synthetase Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 146337789 Common - putative Alkanal monooxygenase BRADO0667 67 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146341868 Common - putative transcriptional regulatory protein, XRE family BRADO5000 31 COG1476 COG1476, Predicted transcriptional regulators Transcription 146340902 Nonpathogen - hypothetical protein BRADO3970 1 None None None 146342029 Common - putative Phosphoheptose isomerase (Sedoheptulose 7-phosphate isomerase) BRADO5167 117 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 146339258 Common - conserved hypothetical protein; putative signal peptide BRADO2229 13 None None None 146339617 Common - Putative RNA polymerase sigma factor BRADO2609 69 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146342799 Nonpathogen - hypothetical protein BRADO5976 1 None None None 146337636 Common - conserved hypothetical protein with PAS,GGDEF and EAL domains BRADO0501 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146338922 Common - putative transcriptional regulatory protein GntR family, with an PLP-dependent aminotransferase, a MOSC and an rubredoxin domain; putative modular protein. BRADO1862 204 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 146340213 Nonpathogen - hypothetical protein BRADO3231 1 None None None 146340608 Nonpathogen - hypothetical protein; putative signal peptide BRADO3653 1 None None None 146340340 Common - malic enzyme BRADO3367 216 COG0281 SfcA, Malic enzyme Energy production and conversion 146337917 Common - hypothetical protein BRADO0805 10 None None None 146343466 Nonpathogen - hypothetical protein BRADO6696 1 None None None 146340030 Nonpathogen - hypothetical protein BRADO3037 1 None None None 146338911 Common vanB vanillate O-demethylase oxidoreductase (Vanillate degradation ferredoxin-like protein) BRADO1851 114 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 146339751 Common - conserved hypothetical protein; putative signal peptide; putative Caspase-like domain (peptidase) BRADO2751 15 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339888 Common - conserved hypothetical protein; putative isochorismatase family protein BRADO2890 88 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146341106 Common nuoH NADH dehydrogenase subunit H BRADO4177 185 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 146338353 Common - Bacteriophytochrome protein BRADO1262 32 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 146342850 Common coxS carbon-monoxide dehydrogenase small subunit BRADO6030 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146340692 Common - putative O-succinylbenzoate--CoA ligase BRADO3743 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146342681 Common pcaC 4-carboxymuconolactone decarboxylase BRADO5848 89 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 146343685 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6928 4 None None None 146342071 Nonpathogen - hypothetical protein BRADO5211 1 None None None 146338993 Common fdh S-(hydroxymethyl)glutathione dehydrogenase (Glutathione-dependent formaldehyde dehydrogenase) (fdh) BRADO1941 198 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 146337919 Nonpathogen - hypothetical protein, putative Trypsin-like serine protease BRADO0808 2 None None None 146339352 Common - putative ATPase BRADO2333 99 COG0714 COG0714, MoxR-like ATPases General function prediction only 146340006 Common - hypothetical protein BRADO3012 3 COG3548 COG3548, Predicted integral membrane protein Function unknown 146338951 Nonpathogen - hypothetical protein; putative signal peptide BRADO1894 1 None None None 146339466 Common - putative receptor/sensory transducer BRADO2452 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340544 Common - Putative lysyl-tRNA synthetase (Lysine--tRNA ligase) BRADO3587 201 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 146338442 Common - hypothetical protein BRADO1358 24 COG3739 COG3739, Uncharacterized integral membrane protein Function unknown 146340945 Common - hypothetical protein BRADO4016 8 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 146339697 Common - Conserved hypothetical protein; putative membrane protein; Putative diguanylate cyclase (GGDEF domain) BRADO2694 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146340939 Common uvrA excinuclease ABC subunit A BRADO4010 228 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 146338720 Nonpathogen bchJ 4-vinyl protochlorophyllide reductase (Bacteriochlorophyll synthase 23 kDa chain) (4-vinyl reductase) BRADO1653 10 COG1719 COG1719, Predicted hydrocarbon binding protein (contains V4R domain) General function prediction only 146339591 Common - Putative short-chain dehydrogenase BRADO2583 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146341409 Common - putative protease (CAAX family); putative membrane protein BRADO4499 25 None None None 146341458 Common - conserved hypothetical protein, containing N-terminal fragment of heat shock protein DnaJ; putative membrane protein BRADO4550 23 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146342241 Nonpathogen - hypothetical protein BRADO5395 1 None None None 146339373 Common - putative transposase BRADO2354 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146343253 Common - transcription elongation factor regulatory protein BRADO6473 117 COG0782 GreA, Transcription elongation factor Transcription 146337642 Common - putative alkanal monooxygenase (FMN-linked) (luciferase-related) BRADO0508 128 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146341784 Common cobJ Precorrin-3B C(17)-methyltransferase BRADO4903 119 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 146338237 Common - Putative methyl-accepting chemotaxis protein BRADO1141 134 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337714 Common - putative competence protein F (COMF) BRADO0583 155 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 146342354 Common livG Putative branched-chain amino acid transport protein (ATP binding protein); livG-like protein BRADO5510 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146342113 Common - Putative uroporphyrinogen-III synthase BRADO5258 48 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 146338652 Nonpathogen - hypothetical protein BRADO1583 1 None None None 146338317 Common - possible asmA protein, assembly of outer membrane proteins BRADO1222 47 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 146343396 Common - hypothetical protein BRADO6625 14 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 146340083 Nonpathogen - hypothetical protein BRADO3092 1 None None None 146341283 Common - putative acyl-CoA dehydrogenase BRADO4362 140 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146342570 Nonpathogen - conserved hypothetical protein; putative glycine-rich cell wall protein BRADO5733 1 None None None 146343701 Nonpathogen - hypothetical protein BRADO6946 1 None None None 146337217 Common - conserved hypothetical protein; putative metal-dependent hydrolase BRADO0043 199 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 146342214 Common phnC Phosphonates import ATP-binding protein phnC (ABC superfamily, atp_bind) BRADO5366 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 146342778 Common - conserved hypothetical protein; putative histone acetyltransfersase (HAT) BRADO5953 55 COG0456 RimI, Acetyltransferases General function prediction only 146342670 Common - conserved hypothetical protein; putative SirA-like protein BRADO5837 49 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 146339598 Common alkB Alkylated DNA repair protein alkB BRADO2590 59 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 146337661 Common - putative branched-chain amino acid ABC transporter, periplasmic binding protein BRADO0527 109 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338783 Common - Putative acetolactate synthase (Acetohydroxy-acid synthase) (ALS), TPP-requiring enzyme BRADO1717 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146337634 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO0499 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146341568 Common - putative efflux transporter permease; putative fusaric acid resistance pump BRADO4669 46 COG1289 COG1289, Predicted membrane protein Function unknown 146340186 Common - Putative transcriptional regulatory protein, Ars family BRADO3202 153 COG0640 ArsR, Predicted transcriptional regulators Transcription 146337250 Common coaBC bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase BRADO0077 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 146338625 Common - ABC transporter, perisplasmic binding protein BRADO1553 75 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 146339185 Common fixR1 short-chain dehydrogenase BRADO2145 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342783 Common - hypothetical protein BRADO5960 10 None None None 146337581 Common rplU 50S ribosomal protein L21 BRADO0436 190 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 146338678 Common crtI Phytoene dehydrogenase (Phytoene desaturase) BRADO1610 96 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 146339712 Common - hypothetical protein BRADO2710 26 COG5447 COG5447, Uncharacterized conserved protein Function unknown 146342152 Common - Putative ABC transporter (substrate binding protein) BRADO5302 60 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 146342616 Common - putative transcriptional regulatory protein, AraC family BRADO5780 75 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146342506 Common mraW S-adenosyl-dependent methyl transferase BRADO5667 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 146340566 Nonpathogen - hypothetical protein BRADO3610 1 None None None 146338222 Nonpathogen - hypothetical protein BRADO1121 1 None None None 146337860 Common glgP Glycogen phosphorylase BRADO0743 141 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 146337932 Common - Methyl-accepting chemotaxis receptor (MCP) BRADO0822 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341451 Nonpathogen - conserved hypothetical protein; putative cytochrome c-552 BRADO4542 8 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146342402 Common - Putative Transporter, LysE family BRADO5560 56 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 146338423 Common - hypothetical protein BRADO1338 152 COG1610 COG1610, Uncharacterized conserved protein Function unknown 146342870 Common - conserved hypothetical protein; putative signal peptide BRADO6050 10 None None None 146339955 Common - hypothetical protein BRADO2959 13 COG5388 COG5388, Uncharacterized protein conserved in bacteria Function unknown 146342862 Common - putative two-component sensor histidine kinase BRADO6042 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146341521 Common - putative sugar ABC transporter, permease protein BRADO4618 172 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146342042 Common - putative O-antigen/LPS export system ATP-binding protein BRADO5181 248 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 146343607 Common - conserved hypothetical protein; putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase domain BRADO6845 49 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146338355 Common - putative Bacteriophytochrome heme oxygenase, BphO-like BRADO1264 7 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 146341955 Common - putative threonine dehydratase BRADO5091 215 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 146339046 Common - conserved hypothetical protein; putative SAM methyltransferase BRADO1999 13 COG5459 COG5459, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 146339800 Common - putative HpcH/HpaI aldolase family protein; putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (HHED aldolase) BRADO2801 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 146343377 Common - conserved hypothetical protein; partial homology with cellulose synthase BRADO6606 18 None None None 146342204 Common phnG PhnG protein BRADO5356 32 COG3624 PhnG, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 146337212 Common - putative Ribosomal-protein-alanine acetyltransferase, RimI-like protein BRADO0038 175 COG0456 RimI, Acetyltransferases General function prediction only 146342174 Nonpathogen - hypothetical protein BRADO5324 1 None None None 146338196 Common appB Oligopeptide transport system permease protein (ABC superfamily, OppBC subfamily) BRADO1094 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340428 Common - putative cytochrome P450 BRADO3466 24 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146338093 Common - hypothetical protein BRADO0989 29 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 146339895 Common - conserved hypothetical protein; putative membrane protein; putative acyltransferase domain BRADO2897 76 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146343401 Nonpathogen - hypothetical protein BRADO6630 1 None None None 146341621 Common - putative cation efflux family protein, CzcD-like BRADO4723 213 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 146339422 Common - putative diheme cytochrome C; sulfur oxidizing protein soxA BRADO2408 32 COG3258 COG3258, Cytochrome c Energy production and conversion 146340333 Common - Putative RlpA family protein BRADO3360 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 146338823 Common - Putative fusion protein : FAD-binding monooxygenase (N-ter)/ alpha/beta-Hydrolase (C-ter) BRADO1758 139 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146341412 Common pyrB aspartate carbamoyltransferase catalytic subunit BRADO4502 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 146340001 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3006 3 None None None 146338051 Common - hypothetical protein BRADO0946 13 None None None 146343513 Common lysK lysyl-tRNA synthetase BRADO6745 77 COG1384 LysS, Lysyl-tRNA synthetase (class I) Translation, ribosomal structure and biogenesis 146341638 Common - putative sensor histidine kinase, putative membrane protein BRADO4741 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146338291 Nonpathogen - hypothetical protein BRADO1195 5 None None None 146341367 Nonpathogen - hypothetical protein BRADO4453 1 None None None 146341374 Common recO DNA repair protein RecO BRADO4460 50 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 146337676 Common - putative transcriptional regulator, MarR family BRADO0543 76 COG1846 MarR, Transcriptional regulators Transcription 146338576 Common fliI flagellum-specific ATP synthase BRADO1498 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 146337596 Common - putative bifunctional protein: class I glutamine amidotransferase-like (N-terminal), transcriptional regulator protein AraC/XylS family (C-terminal) BRADO0452 156 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146339042 Nonpathogen - hypothetical protein BRADO1995 1 None None None 146341826 Common - putative oxalyl-CoA decarboxylase BRADO4955 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146339414 Common - conserved hypothetical protein; putative signal peptide BRADO2399 21 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 146338030 Common - putative cytochrome b561 BRADO0923 91 COG3038 CybB, Cytochrome B561 Energy production and conversion 146338914 Common - putative transcriptional regulatory protein, LysR family BRADO1854 179 COG0583 LysR, Transcriptional regulator Transcription 146340754 Common - hypothetical protein BRADO3811 33 COG3812 COG3812, Uncharacterized protein conserved in bacteria Function unknown 146338839 Common norC Nitric-oxide reductase subunit C (Nitric oxide reductase cytochrome c subunit) (NOR small subunit) BRADO1776 37 None None None 146339098 Common - putative Nudix hydrolase family protein; putative ADP-ribose pyrophosphatase BRADO2052 122 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146339709 Nonpathogen - hypothetical protein BRADO2707 8 None None None 146343238 Common - hypothetical protein BRADO6457 123 COG0432 COG0432, Uncharacterized conserved protein Function unknown 146338535 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1454 1 None None None 146343756 Common cheA Chemotaxis protein cheA BRADO7003 217 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 146341411 Common aidB isovaleryl CoA dehydrogenase (adaptive response to DNA-methylation damage) BRADO4501 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146343075 Common - Putative cobalamin synthesis protein/P47K family protein BRADO6267 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 146337468 Common - 2-octaprenyl-6-methoxyphenyl hydroxylase BRADO0311 130 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146342631 Common pqqD Coenzyme PQQ synthesis protein D (Pyrroloquinoline quinone biosynthesis protein D)(PqqD) BRADO5796 20 None None None 146342089 Nonpathogen - hypothetical protein BRADO5232 1 None None None 146340065 Common rpmC 50S ribosomal protein L29 BRADO3074 135 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 146343204 Nonpathogen - Cation-transporting ATPase pacL (partial) BRADO6412 1 None None None 146339942 Nonpathogen - hypothetical protein BRADO2946 3 None None None 146343847 Common - hypothetical protein BRADO7097 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 146341351 Common - hypothetical protein BRADO4435 13 None None None 146338988 Nonpathogen - hypothetical protein BRADO1936 1 None None None 146341401 Common gatC aspartyl/glutamyl-tRNA amidotransferase subunit C BRADO4491 155 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 146339949 Nonpathogen - hypothetical protein BRADO2953 1 None None None 146343056 Common - hypothetical protein BRADO6247 37 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146342476 Nonpathogen - conserved hypothetical protein; putative Acyl carrier protein-like BRADO5636 1 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146338323 Nonpathogen - hypothetical protein BRADO1228 1 None None None 146340638 Nonpathogen - hypothetical protein BRADO3686 1 None None None 146338660 Common - Conserved hypothetical protein; putative xylose isomerase BRADO1591 30 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 146342950 Common - putative alpha/beta hydrolase; putative haloalkane dehalogenase. BRADO6133 106 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146337503 Common - Putative permeases of the major facilitator superfamily BRADO0351 49 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146341198 Common ssuA putative sulfonate ABC transporter, periplasmic-binding protein BRADO4272 86 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146341266 Common - putative sigma-54-dependent transcriptional regulator; putative transcriptional activator of acetoin/glycerol metabolism. BRADO4343 173 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 146343840 Common - putative sperimidine/putrescine ABC transporter (permease protein) BRADO7090 206 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146340856 Common - putative glycosyl transferase, family 39; putative membrane protein BRADO3919 58 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146340315 Nonpathogen - hypothetical protein BRADO3338 1 None None None 146341108 Common nuoF NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) BRADO4179 166 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 146340490 Common tyrS tyrosyl-tRNA synthetase BRADO3532 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146340390 Nonpathogen - hypothetical protein BRADO3423 1 None None None 146339489 Common - conserved hypothetical protein; putative transmembrane protein BRADO2478 162 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 146341651 Common - hypothetical protein BRADO4755 77 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146340073 Common rplR 50S ribosomal protein L18 BRADO3082 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 146341301 Nonpathogen - hypothetical protein BRADO4382 7 None None None 146343142 Nonpathogen - putative General secretion pathway protein M, GspM BRADO6340 4 None None None 146341905 Common flgA flagellar basal body P-ring biosynthesis protein FlgA BRADO5039 53 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 146343211 Nonpathogen - hypothetical protein; putative exported protein BRADO6421 1 None None None 146341334 Common plsX fatty acid/phospholipid synthesis protein BRADO4418 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 146339476 Common - putative transcriptional regulatory protein, LysR family BRADO2464 145 COG0583 LysR, Transcriptional regulator Transcription 146338188 Common - conserved hypothetical protein, hypothetical UPF0337 protein BRADO1086 7 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 146339393 Common - putative transcriptional regulatory protein, LysR family BRADO2378 87 COG0583 LysR, Transcriptional regulator Transcription 146341251 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4327 1 None None None 146338374 Nonpathogen - hypothetical protein BRADO1284 1 None None None 146341360 Common arsC arsenate reductase (Arsenical pump modifier) BRADO4444 108 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 146343638 Common - putative transcriptional regulator, AraC/XylS family BRADO6878 31 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146340866 Nonpathogen - hypothetical protein BRADO3931 1 None None None 146340528 Common - aminotransferase BRADO3571 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146338693 Common pufM photosynthetic reaction center M protein BRADO1625 21 None None None 146342599 Common - putative gluconolactonase BRADO5762 76 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146340447 Common - putative amino acid transport protein (ABC superfamily, membrane) BRADO3487 175 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 146338117 Common - allantoate amidohydrolase BRADO1013 83 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146340871 Nonpathogen - hypothetical protein BRADO3936 1 None None None 146338039 Common - Putative enoyl-CoA hydratase BRADO0932 174 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146339956 Common - conserved hypothetical protein; putative membrane protein, Rhomboid-like family BRADO2960 20 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 146340652 Common - putative permease (MFS superfamily) BRADO3700 10 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338110 Common - putative oligopeptide transport protein (ABC superfamily, atp_bind) BRADO1006 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 146338347 Nonpathogen - hypothetical protein BRADO1255 8 None None None 146342228 Common - Putative pyrophosphorylase modD (molybdenum transport component) BRADO5380 44 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 146340648 Common - conserved hypothetical protein; putative alpha/beta hydrolase superfamily BRADO3696 39 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 146341611 Common gor glutathione reductase BRADO4712 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 146338944 Common - hypothetical protein BRADO1886 30 COG4101 COG4101, Predicted mannose-6-phosphate isomerase Carbohydrate transport and metabolism 146338981 Common - putative ribose transport ATP-binding protein (rbsA) BRADO1928 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146337229 Common truB tRNA pseudouridine synthase B BRADO0055 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 146339163 Common livG high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) BRADO2121 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146338510 Common - Acyl-coenzyme A transferase BRADO1428 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146339091 Common - putative metal dependent phosphohydrolase BRADO2045 30 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 146342811 Common - enoyl-CoA hydratase BRADO5988 185 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146337923 Nonpathogen - hypothetical protein; putative membrane protein BRADO0812 1 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 146342056 Common - putative glycosyl transferase BRADO5196 115 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146340823 Common - putative protein-L-isoaspartate O-methyltransferase BRADO3885 132 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 146339764 Common - Toxin secretion ABC transporter (ATP-binding and membrane protein); hlyB-like protein BRADO2764 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 146343506 Common - putative metallo-hydrolase/oxidoreductase BRADO6738 82 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 146337269 Common rpsA 30S ribosomal protein S1 BRADO0096 217 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 146338598 Common - conserved hypothetical protein; putative signal peptide, putative TRAP-type uncharacterized transport system BRADO1526 11 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146341703 Common - putative glutathione S-transferase BRADO4808 42 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342763 Common - Putative ABC transporter, permease protein; putative lipoprotein-releasing system transmembrane protein lolC BRADO5937 157 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 146341824 Common - conserved hypothetical protein with a putative CoA binding domain; putative succinyl-CoA (or acyl-CoA) synthetase BRADO4953 176 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 146340081 Common rpoA DNA-directed RNA polymerase subunit alpha BRADO3090 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 146343450 Common - conserved hypothetical protein; putative transglutaminase-like enzyme, putative cysteine protease BRADO6679 21 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 146339721 Common - hypothetical protein BRADO2719 74 COG2983 COG2983, Uncharacterized conserved protein Function unknown 146342677 Common - conserved hypothetical protein; putative helicase domain/type III restriction enzyme (fragment) BRADO5844 66 COG4951 COG4951, Uncharacterized protein conserved in bacteria Function unknown 146342372 Nonpathogen - hypothetical protein BRADO5529 1 None None None 146343851 Common - Conserved Hypothetical protein; putative Glycosyl transferase, family 2; putative Dolichyl-phosphate beta-D-mannosyltransferase BRADO7101 171 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146340579 Common - hypothetical protein BRADO3624 7 None None None 146343765 Common - putative Transcriptional regulatory protein, luxR family BRADO7012 117 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146337567 Common nudH dinucleoside polyphosphate hydrolase BRADO0422 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 146341500 Common - putative membrane fusion protein, component of an efflux pump (RND family, MFP subunit) BRADO4594 141 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146340852 Common - putative Na+/phosphate transporter; putative membrane protein BRADO3915 65 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 146340910 Common - conserved hypothetical protein; putative peptidase (caspase-like) BRADO3979 20 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146337936 Nonpathogen - Conserved hypothetical protein, Putative STAS domain BRADO0826 2 COG3113 COG3113, Predicted NTP binding protein (contains STAS domain) General function prediction only 146338842 Common norD NorD protein required for nitric oxide reductase (Nor) activity BRADO1779 48 COG4548 NorD, Nitric oxide reductase activation protein Inorganic ion transport and metabolism 146341343 Common ribC riboflavin synthase subunit alpha BRADO4427 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 146340918 Nonpathogen - hypothetical protein BRADO3989 3 None None None 146338853 Common hyuA dihydropyrimidinase BRADO1792 183 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 146343332 Common - putative short-chain dehydrogenases/reductase BRADO6558 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339504 Common - putative sugar kinase BRADO2493 105 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 146338277 Common - hypothetical protein; putative signal peptide BRADO1181 17 None None None 146341962 Nonpathogen - Conserved hypothetical protein; putative signal peptide BRADO5098 1 None None None 146342078 Common - putative Pilus assembly protein cpaC BRADO5219 136 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 146337248 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase BRADO0075 204 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146340970 Common - putative response regulator receiver (CheY-like protein) BRADO4041 51 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 146340099 Common - putative ABC transporter permease protein BRADO3108 194 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146339580 Common - enoyl-CoA hydratase BRADO2571 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146339151 Common - putative sperimidine/putrescine transport protein (ABC superfamily, atp_bind) BRADO2109 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146337246 Common - Conserved Hypothetical protein; putative cAMP-binding protein BRADO0073 100 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146343185 Common - putative nitrilase/N-carbamoyl-D-aminoacid amidohydrolase family protein BRADO6386 22 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146343306 Common - putative FAD binding domain protein BRADO6530 44 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146339824 Common ftsH Cell division protein ftsH homolog (ATP-dependent zinc-metallo protease) BRADO2825 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 146338414 Common - putative DNA-binding stress protein (oxydative damage protectant) BRADO1329 146 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 146339455 Common ccoP cytochrome-c oxidase fixP chain BRADO2441 77 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146337762 Common - Conserved hypothetical protein; putative ATP-dependent RNA and DNA helicase (N-terminal) and translation initiation factor 2 (IF-2; GTPase) (C-terminal) BRADO0639 65 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 146342188 Nonpathogen - hypothetical protein BRADO5339 14 COG5352 COG5352, Uncharacterized protein conserved in bacteria Function unknown 146340377 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO3406 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343323 Nonpathogen - hypothetical protein BRADO6548 1 None None None 146339381 Common - putative sugar (D-ribose) ABC transporter (periplasmic binding protein) BRADO2363 99 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146338830 Common modB Molybdenum ABC transporter (permease protein) BRADO1766 221 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 146343570 Common - conserved hypothetical protein; putative branched-chain amino acid ABC transporter, substrate-binding protein BRADO6808 75 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146337496 Common - hypothetical protein BRADO0342 93 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146342494 Common ftsQ putative cell division protein FtsQ BRADO5655 71 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 146343286 Common crtI Phytoene dehydrogenase (Phytoene desaturase) BRADO6507 100 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 146340973 Common serS seryl-tRNA synthetase BRADO4044 245 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 146342474 Common - Putative Sugar (D-ribose) ABC transporter (ATP-binding protein) BRADO5633 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146338517 Common - putative short-chain dehydrogenase/reductase BRADO1435 234 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146341010 Common - conserved hypothetical protein; putative uptake protein (Periplasmic binding protein-like superfamily) BRADO4081 68 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146339444 Common - conserved hypothetical protein; putative signal peptide BRADO2430 31 None None None 146343793 Common - putative glycosyltransferase, group 1 BRADO7042 196 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146343575 Common - Putative NADH dehydrogenase FAD-containing subunit transmembrane protein BRADO6813 195 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 146342626 Common - conserved hypothetical protein; putative globin-like protein BRADO5791 45 COG2346 COG2346, Truncated hemoglobins General function prediction only 146343671 Common putA bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase BRADO6914 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 146340925 Common ppiA peptidyl-prolyl cis-trans isomerase A (rotamase A) BRADO3996 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 146339903 Common - hypothetical protein BRADO2906 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 146343015 Common - Putative HlyD family secretion protein BRADO6200 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146338435 Common - putative cystein protease, Transglutaminase-like domain BRADO1351 75 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 146343177 Nonpathogen - hypothetical protein BRADO6378 1 None None None 146337332 Common dnaJ Chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK BRADO0163 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146339939 Nonpathogen - conserved hypothetical protein; putative membrane protein; putative exported protein BRADO2943 4 None None None 146340142 Common - conserved hypothetical protein; putative signal peptide BRADO3157 7 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 146340050 Nonpathogen - conserved hypothetical protein; putative hydroxylase with FAD/NAD(P)-binding domain BRADO3058 5 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146338587 Nonpathogen - hypothetical protein BRADO1512 1 None None None 146338016 Common - Putative oligopeptide ABC transporter (ATP-binding protein) BRADO0909 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340147 Common - putative alcohol dehydrogenase cytochrome c subunit protein BRADO3162 54 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146338814 Common - conserved hypothetical protein; putative signal peptide BRADO1748 6 None None None 146340831 Common - putative two-component response regulatory protein, response regulator receiver BRADO3894 219 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146337627 Common - hypothetical protein BRADO0492 12 None None None 146343109 Common - hypothetical protein BRADO6306 22 None None None 146338632 Common - putative aldolase BRADO1560 90 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 146337815 Common - Putative ABC transporter, ATP-binding protein BRADO0694 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146338883 Common cheA Chemotaxis protein cheA BRADO1822 158 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 146338784 Common - putative Permease of the major facilitator superfamily (MFS); putative sugar transporter BRADO1718 116 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146340275 Common - conserved hypothetical protein; putative acyltransferases family BRADO3296 146 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146340683 Common - conserved hypothetical protein; putative membrane protein; possible ABC transporter BRADO3734 154 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146342869 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6049 3 None None None 146339974 Nonpathogen - hypothetical protein BRADO2979 1 None None None 146337494 Common - putative Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)(rsmB) BRADO0340 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 146337231 Common pnp polynucleotide phosphorylase/polyadenylase BRADO0057 235 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 146341006 Common - putative ABC-type branched-chain amino acid transporter (substrate binding protein) BRADO4077 79 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339810 Common - putative Staphylococcus nuclease-like protein (SNase-like) BRADO2811 53 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 146337524 Common rpsP 30S ribosomal protein S16 BRADO0378 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 146339327 Common - hypothetical protein BRADO2306 114 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146339809 Common ddlA D-alanine--D-alanine ligase A (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) BRADO2810 209 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 146339654 Common dnaE2 error-prone DNA polymerase BRADO2647 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 146339268 Common - putative inosose dehydratase (2-keto-myo-inositol dehydratase) BRADO2242 65 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 146338837 Common norE NorE protein involved in nitric oxide reduction (Cytochrome c oxidase subunit III-like protein) BRADO1774 89 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 146343292 Common - hypothetical protein BRADO6514 119 COG1690 RtcB, Uncharacterized conserved protein Function unknown 146343496 Common - hypothetical protein BRADO6728 108 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146341697 Common - putative carbohydrate kinase BRADO4802 119 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 146341918 Nonpathogen - hypothetical protein BRADO5053 3 None None None 146343287 Common crtY Lycopene cyclase BRADO6508 16 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 146338646 Common - Putative beta-glucosidase BRADO1577 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 146341023 Common eno Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) BRADO4094 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 146343338 Common - acyl-CoA synthetase BRADO6564 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340365 Nonpathogen - hypothetical protein BRADO3393 1 None None None 146339528 Common paaX phenylacetic acid degradation operon negative regulatory protein paaX BRADO2518 35 COG3327 PaaX, Phenylacetic acid-responsive transcriptional repressor Transcription 146339400 Common - putative outer membrane efflux protein BRADO2385 120 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146337607 Nonpathogen - hypothetical protein BRADO0469 2 None None None 146342111 Nonpathogen - hypothetical protein BRADO5256 1 None None None 146343552 Common - enoyl-CoA hydratase BRADO6789 31 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146337463 Common - regulatory protein (P-II 2) for nitrogen assimilation, regulates GlnL (NRII), GlnE (ATase), and AmtB (ammonium transporter) (fragment) BRADO0306 186 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 146341214 Common metN D-and L-methionine ABC transporter, ATP binding protein BRADO4288 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 146337842 Nonpathogen - hypothetical protein BRADO0723 1 None None None 146338939 Common - conserved hypothetical protein; putative sulfurtransferase BRADO1879 111 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 146340268 Nonpathogen - hypothetical protein; putative signal peptide BRADO3289 8 None None None 146337735 Common xerD site-specific tyrosine recombinase BRADO0607 224 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146342085 Common - putative Flavin-containing monooxygenase BRADO5227 50 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146340766 Common - hypothetical protein BRADO3824 30 COG0456 RimI, Acetyltransferases General function prediction only 146339153 Common - putative ABC spermidine/putrescine transporter permease protein BRADO2111 222 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146342964 Common gltJ glutamate/aspartate ABC transporter (permease protein) BRADO6147 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 146339295 Common tfdB 2,4-dichlorophenol 6-monooxygenase (2, 4-dichlorophenol hydroxylase) BRADO2271 62 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339874 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO2876 1 None None None 146341526 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO4623 142 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146337722 Common - putative Glycosyl hydrolase, family 3 BRADO0591 174 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 146341847 Common fdsA Formate dehydrogenase, alpha subunit BRADO4977 215 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 146342946 Common - hypothetical protein BRADO6128 4 COG3472 COG3472, Uncharacterized conserved protein Function unknown 146337966 Nonpathogen - hypothetical protein BRADO0858 2 None None None 146338128 Common - hypothetical protein BRADO1025 15 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 146343706 Common otsA Trehalose-6-phosphate synthase BRADO6952 97 COG0380 OtsA, Trehalose-6-phosphate synthase Carbohydrate transport and metabolism 146343043 Common - putative transcriptional regulatory protein, GntR family BRADO6233 99 COG1802 GntR, Transcriptional regulators Transcription 146341672 Common - putative oxidoreductase subunit; putative carbon-monoxide dehydrogenase (acceptor), middle subunit CoxM/CutM homologs BRADO4777 82 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146342923 Nonpathogen - hypothetical protein BRADO6104 3 None None None 146340310 Nonpathogen - putative Sulfur globule protein precursor BRADO3333 2 None None None 146343119 Common - putative hydroxylase BRADO6316 44 COG3128 PiuC, Uncharacterized iron-regulated protein Function unknown 146338167 Common cysG siroheme synthase BRADO1065 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 146343663 Nonpathogen - Putative Acyl carrier protein (ACP) BRADO6905 3 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146341676 Common - conserved hypothetical protein, putative TIM-barrel signal transduction protein BRADO4781 19 COG5564 COG5564, Predicted TIM-barrel enzyme, possibly a dioxygenase General function prediction only 146343153 Common - putative phosphoesterase familiy protein; putative signal peptide BRADO6351 35 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 146337309 Common - hypothetical protein BRADO0140 35 COG4405 COG4405, Uncharacterized protein conserved in bacteria Function unknown 146340898 Nonpathogen - hypothetical protein; putative membrane protein BRADO3964 6 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 146342345 Common atsC Putative ABC transporter (ATP binding protein) BRADO5501 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146342275 Common - Thiosulfate sulfurtransferase (Rhodanese) BRADO5429 145 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146337586 Common - putative Deoxyribodipyrimidine photo-lyase BRADO0442 129 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 146342918 Common - putative inositol monophosphatase family protein BRADO6099 198 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 146337898 Common rpmH 50S ribosomal protein L34 BRADO0784 25 None None None 146342135 Common - conserved hypothetical protein; putative Metallo-hydrolase/oxidoreductase BRADO5282 77 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146340227 Common - sensor histidine kinase with multiple PAS and a response regulator receiver domain BRADO3246 219 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146343344 Common minC septum formation inhibitor BRADO6570 105 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 146340456 Common aat leucyl/phenylalanyl-tRNA--protein transferase BRADO3496 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 146340835 Common - conserved hypothetical protein; putative Rieske iron-sulfur domain (partial) BRADO3898 34 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 146339407 Common - Conserved hypothetical protein; Putative MmgE/PrpD family protein BRADO2392 63 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 146337684 Common - hypothetical protein BRADO0552 11 None None None 146341446 Common - hypothetical protein BRADO4537 9 None None None 146337719 Common argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein BRADO0588 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 146343195 Nonpathogen - hypothetical protein BRADO6401 3 None None None 146339105 Common - hypothetical protein BRADO2059 81 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339497 Common - aldehyde dehydrogenase BRADO2486 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146337413 Nonpathogen - hypothetical protein BRADO0251 2 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 146342707 Common - Putative aliphatic amidase expression-regulating protein (amiC) BRADO5874 135 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342984 Common - putative transport protein (permease) BRADO6167 157 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338974 Common - hypothetical protein BRADO1919 3 None None None 146338026 Common - hypothetical protein BRADO0919 7 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146340550 Common hemA 5-aminolevulinate synthase BRADO3594 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 146341663 Common - putative [Acyl-carrier-protein] phosphodiesterase (ACP phosphodiesterase) BRADO4768 94 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 146342525 Common - conserved hypothetical protein; putative exported protein BRADO5687 5 None None None 146343459 Common atpB' ATP synthase subunit B', membrane-bound, F0 sector BRADO6688 37 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 146339965 Common - conserved hypothetical protein; putative NADH oxidase/flavin reductase family; putative nitroreductase family protein BRADO2969 87 COG0778 NfnB, Nitroreductase Energy production and conversion 146337836 Common - Putative major facilitator superfamily (MSF) transporter BRADO0717 98 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343716 Common - putative transcriptional regulator, AsnC/Lrp family BRADO6962 156 COG1522 Lrp, Transcriptional regulators Transcription 146340557 Common - hypothetical protein BRADO3601 7 None None None 146339792 Common - Putative glutaredoxin family protein BRADO2793 127 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 146342661 Common kdpC P-type ATPase, high-affinity potassium transport system, C chain BRADO5828 93 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 146338767 Common hoxA two component sigma-54-dependent hydrogenase transcriptional regulator, Fis family BRADO1701 203 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146338494 Common - putative two-component sensor histidine kinase BRADO1412 199 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146339123 Common - hypothetical protein BRADO2077 12 None None None 146340719 Common Mfd transcription repair coupling factor BRADO3771 219 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 146342140 Common - enoyl-CoA hydratase BRADO5287 178 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146340955 Nonpathogen - hypothetical protein BRADO4026 1 None None None 146342387 Common - Putative signaling protein containing CHASE2/PAS/GGDEF/EAL domains BRADO5544 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146341116 Nonpathogen - hypothetical protein BRADO4187 1 None None None 146338541 Common - Mox; cytochrome c like protein BRADO1461 19 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146342033 Common - Putative alcohol dehydrogenase (Zinc-binding) BRADO5171 208 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 146343100 Common htpG heat shock protein 90 BRADO6296 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 146342065 Common - putative Histidinol-phosphatase BRADO5205 129 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 146341167 Nonpathogen - hypothetical protein BRADO4240 1 None None None 146342442 Common - putative cytochrome P450 BRADO5601 88 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146342590 Common - conserved hypothetical protein; putative ATPase BRADO5753 30 COG0433 COG0433, Predicted ATPase General function prediction only 146340637 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3685 1 None None None 146341313 Common - putative sugar ABC transporter, permease protein BRADO4395 160 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146341425 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4515 3 None None None 146340701 Nonpathogen - hypothetical protein BRADO3752 1 None None None 146343027 Common - putative Inositol monophosphatase family protein BRADO6215 194 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 146338971 Common exbB biopolymer transport protein ExbB; uptake of enterobactin, tonB-dependent uptake of B colicins BRADO1916 116 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 146337397 Common sdhC Succinate dehydrogenase cytochrome b556 subunit BRADO0232 84 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 146343650 Common fmdA formamidase (formamide amidohydrolase) BRADO6892 62 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146341539 Common - putative oxidoreductase; putative Quinone oxidoreductase BRADO4637 158 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146343020 Common - putative conjugal transfer protein, TraD BRADO6206 14 None None None 146343168 Common - Conserved hypothetical protein; putative membrane protein; putative acyltransferase BRADO6366 18 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146340815 Common - Conserved hypothetical protein; putative guanosine polyphosphate pyrophosphohydrolases/synthetases BRADO3875 101 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 146341354 Common - arginyl-tRNA-protein transferase BRADO4438 85 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 146339501 Common - putative Enoyl-CoA hydratase BRADO2490 159 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146338615 Common - Putative ABC transporter (permease protein) BRADO1543 221 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146338058 Common - hypothetical protein BRADO0953 51 COG3576 COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase General function prediction only 146343122 Nonpathogen atzD Cyanuric acid amidohydrolase BRADO6319 6 None None None 146343558 Common - Putative agmatine ureohydrolase BRADO6795 157 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 146340386 Common - Putative transcriptional regulatory protein, LysR family BRADO3419 109 COG0583 LysR, Transcriptional regulator Transcription 146338877 Common - putative gluconolactonase BRADO1816 61 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146341040 Common moaC molybdenum cofactor biosynthesis protein C BRADO4111 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 146342207 Common - ATP binding protein (ABC superfamily, atp_bind) BRADO5359 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146343567 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO6805 132 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146343677 Common - Conserved hypothetical protein, EAL domain protein BRADO6920 163 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 146338930 Nonpathogen - hypothetical protein; putative signal peptide BRADO1870 1 None None None 146340698 Nonpathogen - hypothetical protein BRADO3749 1 None None None 146339576 Common - hypothetical protein BRADO2567 80 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 146341205 Common - putative nitroreductase family protein; putative Oxygen-insensitive NADPH nitroreductase (NfsA-like) BRADO4279 65 COG0778 NfnB, Nitroreductase Energy production and conversion 146341690 Common - putative carbohydrate kinase (xylulose/erythritol kinase, lyx/eryA-like) BRADO4795 173 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 146343560 Common - Putative ABC transporter, permease protein BRADO6797 168 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 161353770 Common aroC chorismate synthase BRADO2153 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 146342502 Common murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase, D-alanyl-D-alanine-adding enzyme) BRADO5663 202 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 146339449 Common fixL sensor protein BRADO2435 223 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146341633 Common - conserved hypothetical protein; putative dioxygenase BRADO4736 26 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146337577 Common obgE GTPase ObgE BRADO0432 249 COG0536 Obg, Predicted GTPase General function prediction only 146341948 Common - Putative ABC transporter (periplasmic binding protein) BRADO5084 58 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 146342106 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO5250 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343310 Common - putative serine protease BRADO6534 211 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146340533 Common - conserved hypothetical protein; putative methyl-accepting chemotaxis protein. BRADO3576 25 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340582 Common - hypothetical protein; putative phage portal protein, HK97 family domain. BRADO3627 46 COG4695 COG4695, Phage-related protein Function unknown 146342668 Common - hypothetical protein BRADO5835 4 None None None 146339141 Common - hypothetical protein BRADO2096 10 None None None 146338236 Nonpathogen - hypothetical protein BRADO1140 1 None None None 146338218 Common - inositol monophosphatase BRADO1117 213 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 146343522 Common - putative sugar ABC transporter, permease protein BRADO6757 118 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146337604 Nonpathogen - hypothetical protein BRADO0465 3 None None None 146343779 Common rfbD dTDP-4-dehydrorhamnose reductase BRADO7026 166 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 146338479 Common - glucose 1-dehydrogenase II BRADO1396 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337481 Common - putative cytochrome c4 precursor BRADO0327 62 COG2863 COG2863, Cytochrome c553 Energy production and conversion 146341472 Common - putative polysaccharide deacetylase; putative Chitin deacetylase BRADO4564 96 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146337791 Common - Putative fatty acid desaturase (DesA family) BRADO0670 24 COG3239 DesA, Fatty acid desaturase Lipid metabolism 146339608 Nonpathogen - hypothetical protein BRADO2600 3 None None None 146342103 Nonpathogen - hypothetical protein BRADO5247 2 None None None 146342310 Common - Putative ABC transporter (permease protein) BRADO5465 94 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146341087 Nonpathogen - hypothetical protein BRADO4158 1 None None None 146343731 Common - putative Peptidase, Caspase-like domain and TPR repeats BRADO6978 70 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146343890 Common msrA methionine sulfoxide reductase A BRADO7141 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 146339537 Common - conserved hypothetical protein; putative hydrolase BRADO2527 62 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 146341018 Common - hypothetical protein BRADO4089 105 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 146341778 Common cobB cobyrinic acid a,c-diamide synthase BRADO4897 136 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 146340956 Nonpathogen - hypothetical protein BRADO4027 2 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 146340714 Common - hypothetical protein BRADO3766 23 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146340906 Nonpathogen - hypothetical protein BRADO3975 5 None None None 146341046 Common - hypothetical protein BRADO4117 7 COG3070 TfoX, Regulator of competence-specific genes Transcription 146343226 Common - conserved hypothetical protein; putative IS66 Orf2 like BRADO6436 53 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146343711 Common - Putative carbon-monoxide dehydrogenase small subunit, coxS-like protein BRADO6957 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146337668 Common - hypothetical protein BRADO0534 33 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 146338580 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1502 3 None None None 146339928 Common - putative short chain oxidoreductase BRADO2932 226 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146340591 Nonpathogen - hypothetical protein BRADO3636 1 None None None 146342553 Nonpathogen - hypothetical protein; putative epxorted protein BRADO5715 1 None None None 146343819 Nonpathogen - hypothetical protein BRADO7068 1 None None None 146337686 Common - hypothetical protein BRADO0554 40 COG4291 COG4291, Predicted membrane protein Function unknown 146338681 Nonpathogen crtC neurosporene and anhydrorhodovibrin hydratase BRADO1613 11 None None None 146337826 Common - hypothetical protein; putative PAS/PAC domain; putative histidine kinase domain; putative signal peptide BRADO0707 73 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 146342841 Common - Putative permease of the major facilitator superfamily (MFS); putative benzoate transporter BRADO6021 67 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 146343247 Common - putative 1-acylglycerol-3-phosphate O-acyltransferase (plsC) BRADO6467 167 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 146341394 Common - hypothetical protein BRADO4482 17 None None None 146343863 Common - putative transcriptional regulator, TetR family BRADO7113 48 COG1309 AcrR, Transcriptional regulator Transcription 146337927 Common - conserved hypothetical protein; putative phage integrase BRADO0817 32 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146339037 Common - hypothetical protein BRADO1990 6 None None None 146338925 Common - putative recombinase BRADO1865 33 None None None 146340953 Nonpathogen - hypothetical protein BRADO4024 1 None None None 146338553 Common cheA Chemotaxis protein cheA BRADO1473 218 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 146337507 Common asd aspartate-semialdehyde dehydrogenase BRADO0358 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 146340774 Common - hypothetical protein BRADO3832 31 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 146341222 Nonpathogen - hypothetical protein BRADO4298 1 None None None 146337965 Common - putative transcriptional regulatory protein, LysR family BRADO0857 189 COG0583 LysR, Transcriptional regulator Transcription 146338506 Nonpathogen - hypothetical protein; putative membrane protein BRADO1424 1 None None None 146343598 Common - Cytochrome bd ubiquinol oxidase, subunit II (cydB, qxtB) BRADO6836 146 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 146337834 Common - Conserved hypothetical protein; putative DNA-binding transcriptional activator of the SARP family at N-terminal; putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) at C-terminal BRADO0715 71 COG3629 DnrI, DNA-binding transcriptional activator of the SARP family Signal transduction mechanisms 146339323 Common ndh respiratory NADH dehydrogenase 2; cupric reductase BRADO2302 181 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 146338184 Common - alpha-ketoglutarate-dependent 2, 4-dichlorophenoxyacetate dioxygenase BRADO1082 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146342182 Nonpathogen - hypothetical protein BRADO5332 1 None None None 146339992 Nonpathogen - hypothetical protein BRADO2997 1 None None None 146338641 Nonpathogen - hypothetical protein BRADO1572 1 None None None 146337501 Common - hypothetical protein BRADO0349 32 COG4117 COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) Energy production and conversion 146342593 Common - putative Organic solvent tolerance protein (OstA) BRADO5756 120 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 146343427 Common - putative glutamine synthetase (glnA4-like) BRADO6656 220 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 146343481 Common lepB1 signal peptidase I BRADO6713 202 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 146340304 Common - putative permease BRADO3327 80 COG0795 COG0795, Predicted permeases General function prediction only 146343648 Common - conserved hypothetical protein; putative ABC transporter; putative signal peptide BRADO6890 51 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 146338328 Common - Two-component hybrid sensor and regulator BRADO1233 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146340229 Nonpathogen - hypothetical protein BRADO3248 3 None None None 146341234 Common - putative dihydrodipicolinate synthetase BRADO4310 169 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 146338431 Common - putative Phenazine biosynthesis protein BRADO1346 119 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 146340914 Common kaiB Circadian clock protein kaiB BRADO3983 24 None None None 146340811 Common - conserved hypothetical protein; putative competence-damage induced protein (CinA) BRADO3870 189 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 146342193 Common sugE Quaternary ammonium compound-resistance protein sugE (SMR family) BRADO5344 143 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 146341225 Nonpathogen - hypothetical protein BRADO4301 1 None None None 146342005 Common - conserved hypothetical protein; putative signal peptide; putative Nuclear export factor GLE1 domain BRADO5142 89 COG4549 COG4549, Uncharacterized protein conserved in bacteria Function unknown 146343413 Common poxB pyruvate dehydrogenase BRADO6642 219 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146343469 Common - putative surfeit 1 protein BRADO6699 33 COG3346 COG3346, Uncharacterized conserved protein Function unknown 146339010 Common - putative outer membrane hemin/siderophore receptor protein BRADO1959 62 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 146340202 Common - putative Phage integrase BRADO3220 95 None None None 146337801 Common - Putative ABC transporter, substrate-binding protein BRADO0680 47 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146343880 Nonpathogen - hypothetical protein BRADO7131 7 COG1805 NqrB, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Energy production and conversion 146340280 Nonpathogen - hypothetical protein BRADO3303 1 None None None 146342883 Common - conserved hypothetical protein; putative signal peptide; EAL Domain BRADO6063 95 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 146342390 Common - Putative ABC transporter (substrate-binding protein) BRADO5547 80 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146340736 Common - hypothetical protein BRADO3790 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 146340741 Common - hypothetical protein BRADO3796 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 146338338 Nonpathogen - hypothetical protein BRADO1246 2 None None None 146343272 Common etfB Electron transfer flavoprotein beta-subunit (Beta-ETF) (Electron transfer flavoprotein small subunit) (ETFSS) BRADO6492 153 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 146339017 Common - putative NUDIX hydrolase BRADO1966 125 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 146339065 Common - putative DNA polymerases BRADO2019 155 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 146341312 Common - putative sugar ABC transporter, permease protein BRADO4394 159 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146337275 Common ohr organic hydroperoxide resistance protein BRADO0102 88 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 146341113 Common nuoC NADH dehydrogenase subunit C BRADO4184 178 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 146343054 Common kpsF Arabinose 5-phosphate isomerase BRADO6245 165 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 146343498 Common - putative permease; putative membrane protein BRADO6730 48 COG0730 COG0730, Predicted permeases General function prediction only 146343538 Common - conserved hypothetical protein, putative membrane protein BRADO6773 33 COG4645 COG4645, Uncharacterized protein conserved in bacteria Function unknown 146341384 Common - putative uracil-DNA glycosylase BRADO4471 91 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 146340109 Common - conserved hypothetical protein; putative glutathione-dependent formaldehyde-activating, GFA BRADO3123 53 COG3791 COG3791, Uncharacterized conserved protein Function unknown 146343150 Common gspE General secretion pathway protein E (Type II traffic warden ATPase) BRADO6348 186 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 146342755 Common - hypothetical protein BRADO5929 32 None None None 146341988 Common - conserved hypothetical protein; putative signal peptide; putative Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase superfamily protein BRADO5124 4 None None None 146340151 Common - Putative NADP-dependent oxidoreductase BRADO3166 79 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 146341176 Common - hypothetical protein BRADO4249 25 COG4716 COG4716, Myosin-crossreactive antigen Function unknown 146339341 Common - NADPH dehydrogenase BRADO2322 179 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 146340317 Common - putative Phosphatase, Ppx/GppA family BRADO3340 182 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 146338960 Common - conserved hypothetical protein; putative flavoprotein BRADO1904 90 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 146342806 Common - hypothetical protein BRADO5983 4 None None None 146337351 Common - conserved hypothetical protein; putative signal peptide BRADO0184 48 COG3786 COG3786, Uncharacterized protein conserved in bacteria Function unknown 146342329 Common mxaF' Methanol dehydrogenase large subunit homolog BRADO5484 63 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146339791 Common - hypothetical protein BRADO2792 91 COG1262 COG1262, Uncharacterized conserved protein Function unknown 146342956 Common - Putative ybaK-like protein; prolyl-tRNA synthetases associated domain BRADO6139 101 COG2606 EbsC, Uncharacterized conserved protein Function unknown 146339641 Common - hypothetical protein BRADO2634 20 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 146341586 Common - putative chemotaxis protein MotA (Flagellar motor component) BRADO4687 82 COG1291 MotA, Flagellar motor component Cell motility and secretion 146339199 Common - putative rRNA methylase BRADO2159 133 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 146343407 Common - hypothetical protein BRADO6636 31 COG5328 COG5328, Uncharacterized protein conserved in bacteria Function unknown 146339248 Common - putative capsule polysaccharide export outer membrane protein precursor BRADO2217 59 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 146341884 Nonpathogen - hypothetical protein BRADO5018 3 None None None 146343601 Common - conserved hypothetical protein; Beta-Ig-H3/Fasciclin domain BRADO6839 68 COG2335 COG2335, Secreted and surface protein containing fasciclin-like repeats Cell envelope biogenesis, outer membrane 146340008 Nonpathogen - hypothetical protein BRADO3014 3 None None None 146342908 Common - Putative Transcriptional regulator BRADO6089 28 None None None 146338159 Common - conserved hypothetical protein; putative signal peptide BRADO1056 9 None None None 146341688 Common fucA L-fuculose-1-phosphate aldolase BRADO4793 137 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 146339279 Nonpathogen - hypothetical protein BRADO2255 4 COG3212 COG3212, Predicted membrane protein Function unknown 146342582 Common - conserved hypothetical protein; putative Rhodanese domain protein BRADO5745 41 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146338816 Common - putative Cation-efflux pump BRADO1750 73 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 146343617 Common - conserved hypothetical protein; putative substrate-binding protein of an ABC transporter BRADO6856 66 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146337511 Nonpathogen - putative Cytochrome c precursor (Cytochrome c552)(cycB) BRADO0362 5 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146339158 Common - hypothetical protein BRADO2116 11 None None None 146342653 Common - putative glycosyl hydrolase (glycosidase) BRADO5820 105 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 146341637 Common - conserved hypothetical protein; putative secreted/membrane protein BRADO4740 16 None None None 146343854 Nonpathogen - hypothetical protein; putative membrane protein BRADO7104 1 None None None 146338333 Nonpathogen - hypothetical protein BRADO1241 2 None None None 146339658 Common - Putative cation/heavy metal efflux system protein BRADO2651 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 146342050 Common - putative NAD dependent epimerase/dehydratase family protein BRADO5190 236 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 146339216 Nonpathogen - hypothetical protein; putative Toll/Interleukin receptor TIR domain BRADO2180 5 None None None 146339363 Common - Putative branched-chain amino acid ABC transporter (substrate-binding protein) BRADO2344 141 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338901 Common - hypothetical protein BRADO1841 6 None None None 146337464 Common amtB1 ammonium transport protein (Amt family) BRADO0307 203 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 146339251 Nonpathogen - hypothetical protein BRADO2221 2 None None None 146340515 Common - hypothetical protein BRADO3557 57 COG2808 PaiB, Transcriptional regulator Transcription 146337849 Nonpathogen - hypothetical protein BRADO0730 1 None None None 146337851 Common - hypothetical protein BRADO0732 12 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146340673 Common - hypothetical protein BRADO3724 106 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 146339131 Common - conserved hypothetical protein; putative membrane protein; putative ribonuclease BRADO2085 83 COG1295 Rbn, Predicted membrane protein Function unknown 146339649 Common - Putative Amidohydrolase family protein; putative hippurate hydrolase (Benzoylglycine amidohydrolase) BRADO2642 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 146341625 Common - putative two-component system histidine kinase (QseC-like) BRADO4728 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342859 Common - branched-chain amino acid aminotransferase BRADO6039 210 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 146338885 Common - Putative methyl-accepting chemotaxis protein (MCP) with multiple PAS domains BRADO1824 158 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341866 Common - conserved hypothetical protein; putative Acyl-CoA N-acyltransferase BRADO4998 15 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 146339271 Common - Putative integrase, catalytic domain (fragment) BRADO2245 16 None None None 146337620 Nonpathogen - hypothetical protein BRADO0483 2 COG1403 McrA, Restriction endonuclease Defense mechanisms 146338635 Common gudD (D)-glucarate dehydratase 1 BRADO1564 46 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 146337974 Common - putative Transthyretin-like protein BRADO0866 63 COG2351 COG2351, Transthyretin-like protein General function prediction only 146342200 Common phnK phosphonates transport ATP-binding protein BRADO5352 249 COG4107 PhnK, ABC-type phosphonate transport system, ATPase component Inorganic ion transport and metabolism 146339924 Common - hypothetical protein BRADO2928 9 None None None 146342813 Common - hypothetical protein BRADO5990 3 None None None 146343097 Common - conserved hypothetical protein; putative acyl carrier domain BRADO6292 4 None None None 146343385 Common - putative fructokinase BRADO6614 120 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 146342578 Common - putative Phosphoglycerate dehydrogenase (PGDH), serA-like BRADO5741 230 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 146338453 Common - hypothetical protein BRADO1369 176 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146340149 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3164 1 None None None 146343256 Common - hypothetical protein BRADO6476 28 COG4867 COG4867, Uncharacterized protein with a von Willebrand factor type A (vWA) domain General function prediction only 146339638 Common - hypothetical protein BRADO2631 120 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 146338266 Common tolQ TolQ protein BRADO1170 147 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 146339807 Nonpathogen - hypothetical protein BRADO2808 1 None None None 146343884 Common - Conserved hypothetical protein; Putative Metal dependent phosphohydrolase containing a response regulator receiver domain BRADO7135 117 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 146337595 Common - conserved hypothetical protein; putative alpha/beta hydrolase BRADO0451 75 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146343149 Common gspF General secretion pathway protein F BRADO6347 138 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 146339266 Nonpathogen - hypothetical protein BRADO2237 9 None None None 146338234 Common - Antifreeze protein, type I : 5-formyltetrahydrofolate cyclo-ligase BRADO1138 178 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 146337361 Common gidB Glucose inhibited division protein B; Methyltransferase gidB BRADO0194 197 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 146338967 Common - putative ABC transporter permease protein BRADO1911 156 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146341058 Common lpxA UDP-N-acetylglucosamine acyltransferase BRADO4129 142 COG1043 LpxA, Acyl- acyl carrier protein 146341135 Nonpathogen - hypothetical protein BRADO4206 4 None None None 146339830 Nonpathogen - hypothetical protein BRADO2831 1 None None None 146339377 Common xylB Xylulose kinase (Xylulokinase) BRADO2359 182 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 146341930 Common - putative Flagellar hook protein flgE BRADO5065 146 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 146339319 Nonpathogen - hypothetical protein; putative signal peptide BRADO2298 1 None None None 146338204 Common - putative NADPH quinone oxidoreductase BRADO1103 202 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146341833 Nonpathogen - hypothetical protein; putative signal peptide BRADO4962 1 None None None 146337745 Common cobT Aerobic cobaltochelatase cobT subunit (cobalamin biosynthesis) BRADO0618 41 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 146339716 Common - Putative acetyl-CoA hydrolase/transferase family protein; putative Succinyl-CoA:coenzyme A transferase BRADO2714 94 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 146342612 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO5776 4 COG5373 COG5373, Predicted membrane protein Function unknown 146339981 Common - hypothetical protein BRADO2986 16 None None None 146342521 Common - putative two component response transcriptional regulator (OmpR family) BRADO5683 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146337876 Common - Putative mutT/Nudix hydrolase family protein; putative NADH pyrophosphatase BRADO0761 111 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 146341731 Common - putative Bacterial sugar transferase family protein BRADO4836 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 146338724 Common cbbT transketolase BRADO1657 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 146340327 Nonpathogen - conserved hypothetical protein; putative Hydrolase, isochorismatase family protein BRADO3353 2 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146337978 Common - putative transthyretin-like protein BRADO0870 62 COG2351 COG2351, Transthyretin-like protein General function prediction only 146341487 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO4580 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343608 Common - putative cytochrome C; possible sulfur oxidation protein SoxX (fragment) BRADO6846 12 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146342416 Common hflK Protease activity modulator HflK BRADO5575 168 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 146342727 Common - putative flagellar basal-body rod modification protein FlgD BRADO5897 36 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 146342735 Common - conserved hypothetical protein with a putative signal peptide, a caspase-like domain (N-terminal) and a TolA-like domain (middle) BRADO5906 16 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146342848 Common coxD Carbon monoxide dehydrogenase, coxD accessory protein BRADO6028 93 COG0714 COG0714, MoxR-like ATPases General function prediction only 146341860 Nonpathogen - hypothetical protein BRADO4992 3 None None None 146341744 Nonpathogen - Conserved hypothetical protein; putative ANTAR domain (AmiR antitermination protein) BRADO4859 4 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 146341913 Common - putative transcriptional regulatory protein, related to MarR family BRADO5048 146 COG1733 COG1733, Predicted transcriptional regulators Transcription 146341806 Common - hypothetical protein BRADO4926 5 COG5652 COG5652, Predicted integral membrane protein Function unknown 146342709 Common - Putative aliphatic amidase expression-regulating protein (amiC) BRADO5876 112 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340406 Nonpathogen - hypothetical protein BRADO3439 1 None None None 146342566 Common - putative cation efflux system protein (CzcA/CusA-like) BRADO5729 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 146338675 Common bchD magnesium chelatase subunit D BRADO1607 55 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 146343518 Nonpathogen - hypothetical protein; putative secreted protein BRADO6751 1 None None None 146343357 Common fadD acyl-CoA synthetase BRADO6584 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339388 Common - hypothetical protein BRADO2373 25 COG4898 COG4898, Uncharacterized protein conserved in bacteria Function unknown 146339604 Common - putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like BRADO2596 73 COG1846 MarR, Transcriptional regulators Transcription 146343266 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO6486 3 None None None 146340723 Common - conserved hypothetical protein; putative signal peptide; possible binding protein component of ABC transporter precursor BRADO3776 117 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 146343081 Nonpathogen - conserved hypothetical protein, putative Acetyltransferase (GNAT) family protein BRADO6274 2 COG4552 Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases General function prediction only 146343878 Common - Conserved hypothetical protein; putative glyoxalase I family protein BRADO7129 45 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146342170 Common - putative sensor histidine kinase with multiple PAS and a response regulator receiver domain (modular protein) BRADO5320 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146337705 Common lysC aspartate kinase BRADO0574 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 146340728 Common - putative phosphatidylcholine synthase BRADO3781 23 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 146339039 Common apt adenine phosphoribosyltransferase BRADO1992 188 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 146341437 Common - conserved hypothetical protein; putative Hit (histidine triad) family protein BRADO4528 233 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 146339000 Common - putative transcriptional regulatory protein, LysR family BRADO1949 125 COG0583 LysR, Transcriptional regulator Transcription 146337654 Common - putative metal-dependent hydrolase BRADO0520 147 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 146341990 Common - Conserved hypothetical protein; putative metallo-dependent hydrolase BRADO5126 99 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 146338984 Common - hypothetical protein BRADO1931 34 COG3812 COG3812, Uncharacterized protein conserved in bacteria Function unknown 146343140 Common - putative Type II secretory pathway, prepilin signal peptidase BRADO6338 3 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146343002 Common - putative Beta-lactamase BRADO6186 119 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146342629 Common pqqB pyrroloquinoline quinone biosynthesis protein PqqB BRADO5794 35 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 146343091 Common - putative cytochrome c family protein BRADO6286 10 None None None 146338733 Common katG catalase; hydroperoxidase HPI(I) BRADO1666 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 146342328 Common - putative Transcriptional regulatory protein AraC/XylS family BRADO5483 38 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146340041 Common rplA 50S ribosomal protein L1 BRADO3049 241 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 146341066 Common frr Ribosome recycling factor (Ribosome-releasing factor) (RRF) BRADO4137 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 146338513 Common - putative glycosyl transferase BRADO1431 40 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146343520 Common - putative transcriptional regulator, LacI family BRADO6755 125 COG1609 PurR, Transcriptional regulators Transcription 146338308 Common - Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains precursor BRADO1213 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146341324 Common - putative HTH-type transcriptional regulator BRADO4406 97 COG1396 HipB, Predicted transcriptional regulators Transcription 146339753 Nonpathogen - hypothetical protein BRADO2753 1 None None None 146340043 Nonpathogen - hypothetical protein BRADO3051 1 None None None 146342748 Common - conserved hypothetical protein with a putative polyphosphate kinase domain BRADO5920 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 146343585 Common - Putative dipeptide/oligopeptide/nickel ABC transporter, substrate-binding protein BRADO6823 201 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146338933 Common betA choline dehydrogenase, a flavoprotein; alcohol dehydrogenase BRADO1873 92 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146340888 Nonpathogen - hypothetical protein BRADO3954 11 None None None 146342423 Common - putative chromate transport protein (ChrA-like) BRADO5582 113 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 146340321 Common purM phosphoribosylaminoimidazole synthetase BRADO3344 231 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 146338148 Common ureG Urease accessory protein UreG BRADO1045 132 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 146339962 Common - putative Transcriptional regulator, TetR family BRADO2966 51 COG1309 AcrR, Transcriptional regulator Transcription 146342049 Common - putative NAD(P)-dependent oxidoreductase, GFO/IDH/MOCA family BRADO5189 187 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146343035 Common - hypothetical protein BRADO6223 40 COG3002 COG3002, Uncharacterized protein conserved in bacteria Function unknown 146343814 Nonpathogen - hypothetical protein BRADO7063 1 None None None 146337803 Common - Putative ABC transporter, permease protein BRADO0682 195 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146338618 Common - putative Transcriptional regulator, IclR family BRADO1546 67 COG1414 IclR, Transcriptional regulator Transcription 146337753 Common - ABC transporter, ATP-binding protein; putative dipeptide/oligopeptide/nickel transporter BRADO0628 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146343166 Common - putative Beta-lactamase BRADO6364 66 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146342274 Nonpathogen - hypothetical protein BRADO5428 3 None None None 146340989 Common - hypothetical protein BRADO4060 90 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 146338141 Common ureB urease subunit beta BRADO1038 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 146337453 Common - conserved hypothetical protein; putative IS66 Orf2 like BRADO0293 53 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342270 Nonpathogen - putative nifU protein (C-terminal fragment) BRADO5424 16 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 146340367 Common glnII Glutamine synthetase II (Glutamate--ammonia ligase II) (GSII) BRADO3395 82 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 146338698 Common cycA cytochrome c2 BRADO1630 52 COG3474 COG3474, Cytochrome c2 Energy production and conversion 146342264 Common - putative iron-sulfur cluster assembly protein (SufA-like) BRADO5418 109 COG0316 IscA, Uncharacterized conserved protein Function unknown 146338656 Common - Putative oligopeptide ABC superfamily (permease protein) BRADO1587 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340380 Common - hypothetical protein; putative branched-chain amino acid ABC transporter, substrate-binding protein. BRADO3409 27 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343690 Nonpathogen - hypothetical protein BRADO6933 1 None None None 146337313 Common - conserved hypothetical protein; putative signal peptide; putative Flavin containing amine oxidoreductase BRADO0144 22 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 146337206 Common - putative Virulence factor MviN-like protein BRADO0032 170 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 146341139 Common - putative transport protein/permease BRADO4210 124 COG0628 PerM, Predicted permease General function prediction only 146341270 Common - putative methane/phenol/toluene monooxygenase (B subunit) BRADO4347 9 None None None 146342899 Common - Putative methyltransferase BRADO6080 211 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 146337241 Common - putative transcriptional regulatory protein, LysR family BRADO0067 102 COG0583 LysR, Transcriptional regulator Transcription 146343475 Common coxE protoheme IX farnesyltransferase BRADO6705 173 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 146341029 Common - Putative Permease of the major facilitator superfamily; putative Multidrug resistance protein BRADO4100 56 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146342665 Nonpathogen - hypothetical protein BRADO5832 1 None None None 146342118 Common - putative long-chain-fatty-acid-CoA ligase BRADO5264 202 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 146341101 Common nuoM NADH dehydrogenase subunit M BRADO4172 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 146342780 Common - conserved hypothetical protein; putative outer surface protein (OMPA-like); putative heat-resistant agglutinin 1 BRADO5955 18 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146337343 Common - coproporphyrinogen III oxidase BRADO0175 204 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 146340236 Common - hypothetical protein BRADO3255 106 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 146338793 Common - Putative component of multidrug efflux system (RND family) BRADO1727 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146340995 Common ureC urease subunit alpha BRADO4066 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 146338089 Common - Putative acyl-CoA dehydrogenase; Pimeloyl-CoA dehydrogenase pimD (Small subunit) BRADO0985 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146340061 Common rpsS 30S ribosomal protein S19 BRADO3070 243 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 146342092 Nonpathogen - Conserved hypothetical protein; putative signal peptide BRADO5235 1 COG5591 COG5591, Uncharacterized conserved protein Function unknown 146340928 Common gyrA DNA gyrase subunit A BRADO3999 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 146342333 Common iorA Isoquinoline 1-oxidoreductase alpha subunit BRADO5488 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146340200 Common - hypothetical protein BRADO3217 12 None None None 146341606 Common - putative transcriptional regulatory protein, ArsR family BRADO4707 120 COG0640 ArsR, Predicted transcriptional regulators Transcription 146339256 Common - Putative biopolymer transport protein, ExbD/TolR family BRADO2227 140 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 146343129 Common - hypothetical protein BRADO6327 6 None None None 146338897 Common - putative thiosulfate sulfurtransferase BRADO1836 35 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146340965 Common yajC preprotein translocase (YajC) BRADO4036 170 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 146341319 Common - putative amidase BRADO4401 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146342741 Common - Putative ABC transporter, substrate binding protein; putative aliphatic sulfonates transporter BRADO5913 98 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146337650 Common regS two component sensor histidine kinase (RegS); putative membrane protein BRADO0516 115 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342787 Common - conserved hypothetical protein; putative Helix-turn-helix motif BRADO5964 16 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 146342466 Common - conserved hypothetical protein; putative signal peptide BRADO5625 7 None None None 146343442 Common - putative Metallo-hydrolase/oxidoreductase superfamily protein; Beta-lactamase-like BRADO6671 75 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146340937 Nonpathogen - hypothetical protein; putative membrane protein BRADO4008 2 None None None 146337280 Common - Putative sugar ABC transporter (ATP binding protein); putative glycerol 3-phosphate transport protein, ugpC-like protein BRADO0107 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146343065 Common - conserved hypothetical protein; putative signal peptide BRADO6257 32 COG3683 COG3683, ABC-type uncharacterized transport system, periplasmic component General function prediction only 146343597 Common - Cytochrome bd ubiquinol oxidase, subunit I (cydA, QxtA) BRADO6835 163 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 146341277 Common - putative sigma-54-dependent transcriptional regulator, HTH Fis-type family BRADO4355 171 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 146339175 Common gcdH glutaryl-CoA dehydrogenase BRADO2134 159 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341763 Nonpathogen flgL flagellar hook-associated protein FlgL BRADO4880 10 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 146343656 Common - Sensor histidine kinase with a response regulator receiver domain (two-component signal transduction system) BRADO6898 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342011 Common - putative NAD(P)-dependent oxidoreductase, GFO/IDH/MOCA family BRADO5148 184 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146343468 Common - putative transcriptional regulator, MerR family BRADO6698 74 COG0789 SoxR, Predicted transcriptional regulators Transcription 146338137 Common - putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO1034 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 146343351 Common - hypothetical protein BRADO6578 48 COG1238 COG1238, Predicted membrane protein Function unknown 146337942 Nonpathogen - hypothetical protein; putative signal peptide BRADO0832 1 None None None 146339864 Common adhA alcohol dehydrogenase BRADO2866 206 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 146341151 Nonpathogen - hypothetical protein BRADO4222 1 None None None 146342215 Common - putative acetyltransferase BRADO5367 74 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 146342825 Common lgt prolipoprotein diacylglyceryl transferase BRADO6004 205 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 146339549 Common - putative ABC transporter permiase component BRADO2540 100 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146339905 Common gpt xanthine-guanine phosphoribosyltransferase BRADO2909 70 COG2236 COG2236, Predicted phosphoribosyltransferases General function prediction only 146339118 Common - putative 3-demethylubiquinone-9 3-O-methyltransferase BRADO2072 81 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146339681 Common - Putative Pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) BRADO2676 53 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 146341723 Common - hypothetical protein BRADO4828 5 None None None 146339619 Common - Putative RNA polymerase sigma factor BRADO2612 148 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146340589 Nonpathogen - hypothetical protein BRADO3634 1 None None None 146338611 Common - Putative ABC transporter (substrate binding protein) BRADO1539 128 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146343439 Nonpathogen - hypothetical protein BRADO6668 1 None None None 146341503 Nonpathogen - Acetylornithine deacetylase(fragment) BRADO4598 1 None None None 146341143 Common - conserved hypothetical protein; putative Dimeric alpha-beta barrel domain BRADO4214 32 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 146339076 Common - conserved hypothetical protein; putative Zn-finger domain BRADO2030 23 COG3369 COG3369, Uncharacterized conserved protein Function unknown 146338394 Common - putative THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE TRANSMEMBRANE BRADO1307 112 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 146340900 Common - putative secretion protein (HlyD family); putative toxin/protease secretion system BRADO3967 135 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146339093 Common - putative glycine cleavage T protein (aminomethyl transferase) BRADO2047 108 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 146339699 Common groES co-chaperonin GroES BRADO2696 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 146340342 Nonpathogen - conserved hypothetical protein, putative dihydrofolate reductase BRADO3369 3 None None None 146337638 Common - putative short-chain alcohol dehydrogenase/reductase with NADP-binding domain BRADO0503 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146338714 Nonpathogen - hypothetical protein BRADO1647 5 None None None 146343641 Common - putative acyl-CoA dehydrogenase BRADO6881 161 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341148 Common - enoyl-CoA hydratase BRADO4219 178 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146339209 Nonpathogen - hypothetical protein BRADO2171 1 None None None 146342074 Common - Putative Aspartyl/Asparaginyl beta-hydroxylase BRADO5215 35 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 146338229 Common - conserved hypothetical protein; NTF2-like BRADO1129 14 COG5485 COG5485, Predicted ester cyclase General function prediction only 146338603 Common amdA amidase BRADO1531 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146341642 Common dusA tRNA-dihydrouridine synthase A BRADO4745 204 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 146341678 Common - putative ABC transporter, ATP-binding protein BRADO4783 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337375 Common hslU ATP-dependent protease ATP-binding subunit BRADO0208 210 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 146339737 Common cycL Cytochrome c-type biogenesis protein cycL precursor BRADO2735 91 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 146343062 Nonpathogen - hypothetical protein BRADO6254 1 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 146340328 Nonpathogen - hypothetical protein BRADO3355 1 None None None 146337518 Nonpathogen - conserved hypothetical protein (partial) BRADO0372 1 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 146340784 Nonpathogen - hypothetical protein BRADO3842 1 None None None 146342374 Common - Putative hydrolase, alpha/beta fold family BRADO5531 25 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146343420 Common - putative ABC transporter, periplasmic binding protein BRADO6649 195 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146341490 Common - putative branched-chain amino acid ABC transporter, periplasmic-binding protein BRADO4583 144 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338740 Common pstS high-affinity phosphate transport protein (ABC superfamily, peri_bind) BRADO1674 104 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 146339307 Common - conserved hypothetical protein; putative NUDIX domain BRADO2283 68 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146340869 Nonpathogen - hypothetical protein BRADO3934 1 None None None 146339848 Common livG high-affinity branched-chain amino acid ABC transporter (ATP-binding protein) BRADO2850 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146338311 Common potH putrescine transport protein (ABC superfamily, membrane) BRADO1216 177 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146340287 Common fabD Malonyl CoA-acyl carrier protein transacylase (MCT) BRADO3310 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 146341717 Common - putative asparagine synthetase BRADO4822 159 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 146340769 Common tmk thymidylate kinase BRADO3827 232 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 146340164 Common - sulfur oxidation protein SoxY BRADO3180 38 COG5501 COG5501, Predicted secreted protein Function unknown 146338230 Common - Putative penicillin binding protein BRADO1130 134 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146342311 Common - hypothetical protein BRADO5466 10 None None None 146343139 Nonpathogen - hypothetical protein BRADO6337 3 None None None 146337430 Common - hypothetical protein BRADO0268 118 COG2855 COG2855, Predicted membrane protein Function unknown 146338342 Nonpathogen - hypothetical protein BRADO1250 6 None None None 146343832 Common - hypothetical protein BRADO7081 10 COG3586 COG3586, Uncharacterized conserved protein Function unknown 146341074 Common dnaE DNA polymerase III subunit alpha BRADO4145 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 146341467 Common - putative glutathione S-transferase (GST) BRADO4559 71 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342126 Common - conserved hypothetical protein; putative membrane protein; putative TctA subunit of the Tripartite Tricarboxylate Transport(TTT) Family BRADO5273 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 146340207 Common - putative methyl-accepting chemotaxis protein BRADO3225 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341248 Common - putative transcriptional regulatory protein, Ars family BRADO4324 51 COG0640 ArsR, Predicted transcriptional regulators Transcription 146339768 Common - conserved hypothetical protein; putative osmC/ohr family protein BRADO2768 33 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 146339082 Common nadB L-aspartate oxidase BRADO2036 223 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 146343543 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein BRADO6779 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 146340251 Common - putative transcriptional regulatory protein, TetR/AcrR family BRADO3272 104 COG1309 AcrR, Transcriptional regulator Transcription 146338045 Nonpathogen - hypothetical protein BRADO0940 1 None None None 146337854 Common - Putative HPr kinase/phosphorylase BRADO0735 38 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 146339187 Common - conserved hypothetical protein; putative signal peptide BRADO2147 16 None None None 146339482 Common nrtA ABC transporter nitrate-binding protein (nrtA) BRADO2471 83 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146343781 Common rfbA Glucose-1-phosphate thymidylyltransferase BRADO7028 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 146343470 Common - hypothetical protein BRADO6700 27 COG5349 COG5349, Uncharacterized protein conserved in bacteria Function unknown 146337419 Common - conserved hypothetical protein; putative two-component response regulator BRADO0257 27 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343213 Common - hypothetical protein BRADO6423 10 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 146341213 Common metI D-and L-methionine ABC transporter, permease protein BRADO4287 112 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 146341563 Common - conserved hypothetical protein; putative NUDIX hydrolase BRADO4664 20 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 146343233 Common - hypothetical protein BRADO6452 5 None None None 146339502 Common - putative ferredoxin--NAD(+) reductase BRADO2491 223 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 146342456 Nonpathogen - hypothetical protein BRADO5615 1 None None None 146338571 Common - dihydropyrimidinase BRADO1492 207 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 146343747 Common - Methyl-accepting chemotaxis protein (MCP) BRADO6994 70 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338015 Common - putative Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) BRADO0908 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146343782 Common rfbB dTDP-D-glucose 4,6-dehydratase BRADO7029 231 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 146343580 Common - amidase BRADO6818 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146343540 Common hslO Hsp33-like chaperonin BRADO6776 135 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 146342693 Common - Conserved hypothetical protein; putative Von Willebrand factor type A domain BRADO5860 43 COG4548 NorD, Nitric oxide reductase activation protein Inorganic ion transport and metabolism 146339189 Common - conserved hypothetical protein; putative anti-sigma factor BRADO2149 25 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 146339056 Common - adenine DNA methyltransferase BRADO2010 135 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 146339516 Common - hypothetical protein BRADO2506 39 COG3342 COG3342, Uncharacterized conserved protein Function unknown 146342793 Common fusA elongation factor G BRADO5970 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 146338449 Common - conserved hypothetical protein; putative transglycolase BRADO1365 102 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146343299 Common - putative hydrolase, alpha/beta fold family BRADO6522 103 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146340466 Common - putative Transcriptional regulatory protein, GntR family BRADO3506 102 COG1802 GntR, Transcriptional regulators Transcription 146341051 Common - putative ComEC/Rec2 family protein BRADO4122 65 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 146342974 Common - Putative PspA/IM30 family protein BRADO6157 24 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 146337318 Common - putative Multidrug resistance protein (drug efflux transporter, EmrB-like) (MFS superfamily) BRADO0149 184 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146342991 Nonpathogen - hypothetical protein BRADO6174 1 None None None 146341875 Common - putative Transcriptional regulatory protein, TetR family BRADO5007 38 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 146339725 Common - Conserved hypothetical protein; Putative Metallo-beta-lactamase family protein BRADO2723 121 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 146340359 Common - hypothetical protein BRADO3387 14 COG5482 COG5482, Uncharacterized conserved protein Function unknown 146341656 Common - conserved hypothetical protein; putative amidohydrolase BRADO4760 96 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 146337605 Nonpathogen - hypothetical protein BRADO0466 1 None None None 146338387 Common - Putative general secretion pathway protein K BRADO1299 11 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 146338860 Common - putative dipeptide transport protein (ABC superfamily, membrane) BRADO1799 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340258 Nonpathogen - hypothetical protein BRADO3279 1 None None None 146339450 Common - hypothetical protein BRADO2436 34 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 146337612 Common - hypothetical protein; putative secreted protein BRADO0474 4 None None None 146340059 Common rplW 50S ribosomal protein L23 BRADO3068 227 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 146341481 Common - conserved hypothetical protein; putative nucleoside-diphosphate-sugar epimerases BRADO4574 36 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146338525 Common - Putative sulfopyruvate decarboxylase alpha subunit BRADO1444 27 COG4032 COG4032, Predicted thiamine-pyrophosphate-binding protein General function prediction only 146342018 Common - hypothetical protein BRADO5155 26 COG0392 COG0392, Predicted integral membrane protein Function unknown 146338179 Common - conserved hypothetical protein; putative signal peptide BRADO1077 36 COG4095 COG4095, Uncharacterized conserved protein Function unknown 146338194 Common - Putative oligopeptide-binding protein precursor (ABC superfamily) BRADO1092 192 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146341516 Common - putative dihydroxyacetone kinase phosphotransfer protein (DhaH/M-like) BRADO4613 45 COG3412 COG3412, Uncharacterized protein conserved in bacteria Function unknown 146342147 Common - Putative TRAP-type C4-dicarboxylate transport system, small permease component (dctQ subunit) BRADO5296 37 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 146342876 Nonpathogen - hypothetical protein BRADO6056 7 None None None 146340474 Nonpathogen - hypothetical protein BRADO3515 1 None None None 146338119 Common - putative pilus assembly protein; putative membrane protein BRADO1015 79 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 146342221 Common - putative ABC transporter (permease protein) BRADO5373 160 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146337335 Common - conserved hypothetical protein; putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO0166 27 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146342637 Common - 2-oxoglutarate ferredoxin oxidoreductase subunit beta BRADO5802 119 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 146337349 Common - Putative cyclic nucleotide binding protein BRADO0182 35 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146337388 Common - putative enzyme (N-terminal); transcriptional regulator with P-loop containing NTP hydrolase domain (C-terminal)(yifB) BRADO0221 202 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 146340023 Nonpathogen - hypothetical protein BRADO3030 3 None None None 146340210 Common - conserved hypothetical protein; putative Bacterial extracellular solute-binding protein BRADO3228 54 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146339349 Nonpathogen - conserved hypothetical protein; putative membrane protein; putative signal peptide BRADO2330 4 None None None 146337527 Common - conserved hypothetical protein; putative secreted protein BRADO0381 99 COG2968 COG2968, Uncharacterized conserved protein Function unknown 146339190 Common - ECF family sigma factor BRADO2150 114 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146341297 Nonpathogen - hypothetical protein BRADO4378 16 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 146339788 Common - Conserved Hypothetical protein; BolA-like protein BRADO2789 83 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 146341906 Common flgH flagellar basal body L-ring protein BRADO5040 102 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 146340628 Common - putative ETC complex I subunit conserved region protein (fragment). BRADO3676 37 None None None 146337691 Nonpathogen - hypothetical protein BRADO0559 1 None None None 146343763 Common - putative sensor histidine kinase with a response regulator receiver domain and a phosphotransferase (HPt) domain BRADO7010 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146337944 Common - conserved hypothetical protein; putative signal peptide BRADO0834 15 None None None 146337408 Common - conserved hypothetical protein; putative membrane protein; putative phosphatase BRADO0244 16 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 146337560 Common - conserved hypothetical protein; putative rare lipoprotein A (RlpA-like); putative secreted protein BRADO0414 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 146339305 Common csoS1A major carboxysome shell protein 1A (carbon dioxide concentrating mechanism protein) BRADO2281 46 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 146338257 Common - hypothetical protein BRADO1161 7 None None None 146338489 Common - putative Two-component system histidine kinase BRADO1407 185 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146339078 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2032 8 None None None 146342804 Common - conserved hypothetical protein; putative signal peptide BRADO5981 45 COG4102 COG4102, Uncharacterized protein conserved in bacteria Function unknown 146337925 Nonpathogen - hypothetical protein BRADO0814 1 None None None 146340854 Common - Putative Glycosyl transferase, family 2; putative Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase BRADO3917 201 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146342444 Common - putative Extradiol ring-cleavage dioxygenase BRADO5603 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 146342435 Common - putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO5594 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343452 Common - putative sugar transporter, MFS family BRADO6681 119 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146341376 Common era GTP-binding protein Era BRADO4462 228 COG1159 Era, GTPase General function prediction only 146340063 Common rpsC 30S ribosomal protein S3 BRADO3072 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 146343151 Common gspD General secretion pathway protein D BRADO6349 142 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 146338302 Common purE Phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC) BRADO1206 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 146342688 Common - Hypothetical protein; putative two-component sensor histidine kinase BRADO5855 186 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146342087 Common - putative alanyl-tRNA synthetase related protein BRADO5229 233 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 146343827 Common - putative glycosyltransferase, group 1 BRADO7076 213 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146338112 Nonpathogen - hypothetical protein BRADO1008 12 None None None 146338052 Nonpathogen - hypothetical protein BRADO0947 5 None None None 146338122 Common - Putative pilus assembly protein cpaD; putative signal peptide BRADO1018 14 COG5461 COG5461, Type IV pili component Cell motility and secretion 146341186 Common - conserved hypothetical protein with RDD domain; putative membrane protein BRADO4259 24 COG1714 COG1714, Predicted membrane protein/domain Function unknown 146338851 Common - N-carbamoyl-D-amino acid hydrolase (D-N-alpha-carbamilase) BRADO1790 192 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146340864 Nonpathogen - hypothetical protein; putative resolvase BRADO3928 3 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 146342512 Common - putative multidrug resistance protein A (drug efflux transporter, EmrA-like) BRADO5674 126 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146340680 Common - putative branched-chain amino acid transport system ATP-binding protein BRADO3731 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146340587 Nonpathogen - hypothetical protein BRADO3632 1 None None None 146342534 Common - putative phosphatidylethanolamine-N-methyltransferase (PmtA-like) BRADO5696 207 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146338429 Nonpathogen - hypothetical protein BRADO1344 1 None None None 146340048 Common - hypothetical protein BRADO3056 11 COG1232 HemY, Protoporphyrinogen oxidase Coenzyme metabolism 146338543 Common - hypothetical protein; putative protein prenyltransferase \t_ BRADO1463 4 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 146340526 Common phbC Poly-beta-hydroxybutyrate polymerase BRADO3568 73 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 146341427 Nonpathogen - hypothetical protein BRADO4517 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 146338695 Common - putative transposase BRADO1627 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146339478 Common - putative transmembrane cytochrome C biogenesis protein BRADO2467 92 COG0785 CcdA, Cytochrome c biogenesis protein Posttranslational modification, protein turnover, chaperones 146340449 Common - hypothetical protein BRADO3489 4 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 146343073 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6265 1 None None None 146337810 Common - Putative ABC transporter (substrate binding protein) BRADO0689 169 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146340071 Common rpsH 30S ribosomal protein S8 BRADO3080 237 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 146337461 Common - hypothetical protein BRADO0304 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 146338409 Common greA transcription elongation factor GreA BRADO1324 204 COG0782 GreA, Transcription elongation factor Transcription 146342633 Common pip proline iminopeptidase (PIP) (Prolyl aminopeptidase) BRADO5798 100 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342675 Common - conserved hypothetical protein; putative signal peptide; putative UPF0065 (bug) family BRADO5842 69 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146339972 Common - putative amino acid transporter BRADO2977 175 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 146339586 Common - Putative oxidoreductase BRADO2577 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339627 Common - Putative ABC transporter nucleotide binding/ATPase protein BRADO2620 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146343845 Common - putative Adenylate cyclase BRADO7095 83 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146340025 Common - putative L-carnitine dehydrogenase BRADO3032 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146337754 Nonpathogen - hypothetical protein BRADO0629 1 None None None 146343308 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6532 5 None None None 146337670 Common - hypothetical protein BRADO0536 9 None None None 146341946 Nonpathogen - Conserved hypothetical protein; putative Hpt domain BRADO5082 3 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 146338946 Common - conserved hypothetical protein; putative membrane protein; putative cation efflux pump (Multi antimicrobial extrusion family) BRADO1889 48 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 146340786 Common - Putative Beta-glucosidase BRADO3844 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 146339971 Nonpathogen - conserved hypothetical protein; putative alpha/beta-Hydrolase family protein BRADO2976 4 None None None 146340570 Nonpathogen - hypothetical protein BRADO3614 1 None None None 146339652 Common - hypothetical protein BRADO2645 23 COG4544 COG4544, Uncharacterized conserved protein Function unknown 146342313 Common - Putative methanol oxidation protein, mxaJ homolog BRADO5468 24 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146337438 Common - hypothetical protein BRADO0278 27 COG1872 COG1872, Uncharacterized conserved protein Function unknown 146339391 Common - putative amine oxidase (flavin-containing) BRADO2376 42 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 146341452 Common - putative transport protein (MFS family) BRADO4543 187 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338746 Common - hypothetical protein; putative signal peptide BRADO1680 105 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146342412 Nonpathogen - hypothetical protein BRADO5571 1 None None None 146343302 Common tynA tyramine oxidase BRADO6525 22 COG3733 TynA, Cu2+-containing amine oxidase Secondary metabolites biosynthesis, transport, and catabolism 146339960 Common - putative transposase BRADO2964 29 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146340979 Common - putative sugar hydrolase/Beta-N-acetylhexosaminidase BRADO4050 169 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 146342076 Common - hypothetical protein BRADO5217 12 None None None 146340687 Common - putative transcriptional regulatory protein, LuxR family BRADO3738 141 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146338555 Common cheY Chemotaxis protein cheY BRADO1475 221 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146341032 Common pyrG CTP synthetase BRADO4103 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 146338522 Common - formyl-coenzyme A transferase NAD(P)-binding BRADO1441 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146338372 Common gvpA gas vesicle synthesis protein GvpA BRADO1282 22 None None None 146343508 Common - conserved hypothetical protein, putative membrane protein BRADO6740 10 None None None 146341341 Common nusB transcription antitermination protein NusB BRADO4425 169 COG0781 NusB, Transcription termination factor Transcription 146339691 Common - hypothetical protein BRADO2686 12 None None None 146339492 Common - putative Ferredoxin--NAD(+) reductase BRADO2481 89 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 146338849 Common - hypothetical protein BRADO1788 135 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 146338283 Common - hypothetical protein BRADO1187 38 COG3492 COG3492, Uncharacterized protein conserved in bacteria Function unknown 146342718 Common - putative glutamine amidotransferase GATase, classII BRADO5885 237 COG0067 GltB, Glutamate synthase domain 1 Amino acid transport and metabolism 146342827 Common - 50S ribosomal protein L25/general stress protein Ctc BRADO6006 158 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 146340962 Common - hypothetical protein BRADO4033 35 COG3737 COG3737, Uncharacterized conserved protein Function unknown 146340531 Common - putative (S)-2-haloacid dehalogenase IVA (2-haloalkanoic acid dehalogenase IVA) (L-2-haloacid dehalogenase IVA) (Halocarboxylic acid halidohydrolase IVA) BRADO3574 33 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 146342519 Common - conserved hypothetical protein; putative exported protein BRADO5681 12 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 146340646 Common - conserved hypothetical protein; putative signal peptide BRADO3694 21 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 146339841 Common rpe Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) BRADO2842 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 146341654 Nonpathogen - conserved hypothetical protein, putative membrane protein BRADO4758 1 None None None 146342761 Common purA adenylosuccinate synthetase BRADO5935 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 146342988 Common - putative transcriptional regulator, TetR family BRADO6171 86 COG1309 AcrR, Transcriptional regulator Transcription 146342382 Common - Conserved hypothetical protein; Putative SCP-like extracellular protein BRADO5539 28 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 146340440 Common - NADH dehydrogenase BRADO3480 39 COG3761 COG3761, NADH:ubiquinone oxidoreductase 17.2 kD subunit Energy production and conversion 146339378 Common xylA xylose isomerase BRADO2360 69 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 146343206 Common - putative DNA-invertase from bacteriophage BRADO6414 100 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 146340139 Common - hypothetical protein BRADO3154 71 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146338918 Common - putative methyltransferase BRADO1858 39 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146338279 Common - putative transcriptional regulator, TetR family BRADO1183 8 COG1309 AcrR, Transcriptional regulator Transcription 146338840 Common norB Nitric-oxide reductase subunit B (Nitric oxide reductase cytochrome b subunit) (NOR large subunit) BRADO1777 113 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 146337443 Common - putative cytochrome P450 hydroxylase superfamily proteins BRADO0283 76 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146338461 Common - hypothetical protein BRADO1378 10 COG1475 Spo0J, Predicted transcriptional regulators Transcription 146342299 Nonpathogen - hypothetical protein BRADO5454 2 None None None 146342765 Common - putative Magnesium-translocating P-type ATPase BRADO5939 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 146343892 Common rpsT 30S ribosomal protein S20 BRADO7143 168 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 146341096 Common - hypothetical protein BRADO4167 20 COG5454 COG5454, Predicted secreted protein Function unknown 146339264 Common - conserved hypothetical protein; putative Carbamoyltransferase family protein BRADO2235 52 COG2192 COG2192, Predicted carbamoyl transferase, NodU family Posttranslational modification, protein turnover, chaperones 146343132 Common - putative Spermine/spermidine synthase family protein BRADO6330 12 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 146339937 Common - hypothetical protein BRADO2941 19 None None None 146337222 Common trmB tRNA (guanine-N(7))-methyltransferase BRADO0048 170 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 146342352 Common - Putative isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase BRADO5508 132 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 146339714 Nonpathogen - hypothetical protein BRADO2712 1 None None None 146339776 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase BRADO2776 161 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 146338585 Common - putative O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein BRADO1509 116 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 146339559 Common - putative aldolase BRADO2550 144 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 146342500 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase BRADO5661 210 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 146342251 Common - putative transposase BRADO5405 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146343683 Common - Toxin secretion ABC transporter (ATP-binding and membrane protein); hlyB-like protein BRADO6926 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 146340335 Nonpathogen - hypothetical protein BRADO3362 8 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146339427 Common - Isoquinoline 1-oxidoreductase beta subunit BRADO2413 104 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146338722 Common cbbF D-fructose-1,6-bisphosphatase protein BRADO1655 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 146340392 Nonpathogen - hypothetical protein BRADO3425 1 None None None 146342027 Common - Putative sugar-phosphate nucleotidyl transferase BRADO5165 231 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 146343394 Nonpathogen - hypothetical protein BRADO6623 3 None None None 146341896 Common - conserved hypothetical protein; putative exported protein BRADO5030 6 COG5373 COG5373, Predicted membrane protein Function unknown 146340655 Common - conserved hypothetical protein; putative signal peptide BRADO3703 80 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146337252 Common - Putative sensor histidine kinase BRADO0079 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 146338757 Common hupI Rubredoxin hupI BRADO1691 91 COG1773 COG1773, Rubredoxin Energy production and conversion 146338869 Common - Putative ABC transporter ATP-binding protein BRADO1808 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146342504 Common ftsI division-specific transpeptidase, penicillin-binding protein BRADO5665 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 146337455 Common - conserved hypothetical protein; putative phage protein Gp37/Gp68 BRADO0295 42 COG4422 COG4422, Bacteriophage protein gp37 Function unknown 146343251 Nonpathogen - hypothetical protein BRADO6471 8 None None None 146342366 Common - hypothetical protein BRADO5523 15 None None None 146342404 Common ilvH acetolactate synthase 3 regulatory subunit BRADO5562 189 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 146341773 Common - putative flagellin BRADO4890 122 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 146338871 Common - inner membrane ABC transporter permease protein YjfF BRADO1810 116 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146341499 Common - conserved hypothetical protein; putative secreted protein BRADO4593 41 None None None 146337448 Common - conserved hypothetical protein; putative signal peptide; putative polysaccharide deacetylase BRADO0288 90 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146339771 Common - putative nitrate ABC transporter (Substrate-binding protein) (ntrA-like protein) BRADO2771 98 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146340538 Common - putative transcriptional regulatory protein, MarR family. BRADO3581 7 COG1846 MarR, Transcriptional regulators Transcription 146341628 Common - putative cation efflux system protein; putative heavy metal efflux pump CzcA-like BRADO4731 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 146343511 Common - hypothetical protein BRADO6743 44 COG3502 COG3502, Uncharacterized protein conserved in bacteria Function unknown 146341957 Common ttuE Pyruvate kinase BRADO5093 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 146337678 Common - putative permease (drug-metabolite transporter DMT family) BRADO0545 132 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 146339355 Common - protocatechuate transporter (MFS superfamily) BRADO2336 156 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146340160 Common - putative transmembrane cytochrome C biogenesis protein, putative SoxV protein BRADO3175 189 COG0785 CcdA, Cytochrome c biogenesis protein Posttranslational modification, protein turnover, chaperones 146338986 Common - hypothetical protein BRADO1934 19 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 146338081 Common - Putative high-affinity branched-chain amino acid transport system permease protein livH (ABC superfamily, membrane) BRADO0977 149 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146337934 Common cheW Chemotaxis protein cheW BRADO0824 124 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 146339984 Common - response regulator receiver (CheY-like protein) BRADO2989 215 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 146339857 Common - putative ATPase, AAA family BRADO2859 98 COG0714 COG0714, MoxR-like ATPases General function prediction only 146337215 Common - Conserved hypothetical protein; putative MiaB-like tRNA modifying enzyme BRADO0041 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 146339783 Common - Conserved hypothetical protein; putative Thioesterase superfamily BRADO2784 21 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146337210 Common - Putative Methyl-accepting chemotaxis protein with multiple PAS domains BRADO0036 160 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340564 Nonpathogen - hypothetical protein BRADO3608 1 None None None 146342238 Common - putative transcriptional regulator, FUR family; possible iron response regulator IRR BRADO5392 99 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 146340420 Nonpathogen - hypothetical protein BRADO3456 1 None None None 146343562 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6800 2 COG5373 COG5373, Predicted membrane protein Function unknown 146340396 Nonpathogen - hypothetical protein BRADO3429 6 None None None 146341483 Common - conserved hypothetical protein (conserved hypothetical protein 2058 with conserved motif GxGxDxHG near the N-terminus) BRADO4576 12 None None None 146338224 Common cbbG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) BRADO1124 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 146337473 Common - hypothetical protein BRADO0318 16 None None None 146337190 Common - phosphoribosylaminoimidazole-succinocarboxamide synthase BRADO0015 192 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 146340188 Common - putative thioredoxin BRADO3204 220 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 146341184 Nonpathogen - hypothetical protein BRADO4257 1 None None None 146341417 Nonpathogen - hypothetical protein BRADO4507 3 None None None 146342572 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO5735 1 None None None 146341782 Common cobL Precorrin-6Y C(5,15)-methyltransferase BRADO4901 107 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 146338768 Common - putative sensor histidine kinase with a PAS domain BRADO1702 223 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146339419 Nonpathogen - hypothetical protein BRADO2405 4 COG1416 COG1416, Uncharacterized conserved protein Function unknown 146337537 Common ccmB heme ABC transporter (heme exporter protein B), permease protein (cytochrome c biogenesis) BRADO0391 74 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 146337262 Common accD acetyl-CoA carboxylase subunit beta BRADO0089 218 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 146337693 Common - putative polyhydroxyalkanoate synthesis repressor PhaR-like BRADO0561 65 COG5394 COG5394, Uncharacterized protein conserved in bacteria Function unknown 146339416 Common - putative Isochorismatase BRADO2402 142 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146337598 Common - hypothetical protein BRADO0454 22 COG3440 COG3440, Predicted restriction endonuclease Defense mechanisms 146343371 Nonpathogen - hypothetical protein BRADO6599 2 None None None 146337559 Common priA primosome assembly protein PriA BRADO0413 210 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 146342298 Common - putative oxidoreductase, NAD(P)-binding domain BRADO5453 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342782 Common - putative L-lactate dehydrogenase (Cytochrome); FMN-dependent alpha-hydroxy acid dehydrogenase BRADO5958 110 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 146341623 Common - putative TRAP C4-dicarboxylate transport system, DctQ subunit (small permease component) BRADO4726 70 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 146337724 Common - acyl-CoA synthetase BRADO0596 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146341831 Nonpathogen - conserved hypothetical protein; putative signal peptide; putative Peptidoglycan binding-like domain BRADO4960 5 COG3409 COG3409, Putative peptidoglycan-binding domain-containing protein Cell envelope biogenesis, outer membrane 146337682 Common - putative plasmid stabilization system protein BRADO0549 8 COG3668 ParE, Plasmid stabilization system protein General function prediction only 146341285 Common - putative alkanesulfonate ABC transporter, permease protein BRADO4364 183 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146339290 Common - putative ABC transporter substrate-binding protein BRADO2266 21 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339569 Common - putative methyl-accepting chemotaxis protein; putative signal peptide BRADO2560 171 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146342083 Common - phenol 2-monooxygenase BRADO5224 67 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146338096 Common - putative ABC transporter, ATP-binding protein BRADO0992 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 146341720 Common - hypothetical protein; putative NADP-dependent dehydrogenase (oxidoreductase) BRADO4825 162 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146343838 Nonpathogen - hypothetical protein BRADO7088 1 None None None 146343726 Common - putative transcriptional regulator, Crp/Fnr family BRADO6973 164 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146341618 Nonpathogen - hypothetical protein BRADO4720 9 None None None 146341977 Common - putative transcriptional regulatory protein, TetR family BRADO5113 79 COG1309 AcrR, Transcriptional regulator Transcription 146338340 Common - hypothetical protein, putative ATP-dependent DNA helicase. BRADO1248 4 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 146337716 Common - Putative mutator protein mutT BRADO0585 161 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146337582 Common - conserved hypothetical protein; putative glucokinase BRADO0437 8 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 146341145 Common rpsI 30S ribosomal protein S9 BRADO4216 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 146340302 Common - putative Organic solvent tolerance protein OstA (ImpA) BRADO3325 115 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 146341511 Common - putative transcriptional regulator (fragment) BRADO4608 2 COG2188 PhnF, Transcriptional regulators Transcription 146339338 Common - putative Alpha/beta hydrolase; putative Carboxylesterase/3-oxoadipate enol-lactonase BRADO2319 184 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341160 Common - hypothetical protein BRADO4232 12 None None None 146342044 Nonpathogen - hypothetical protein; TPR domain protein BRADO5183 1 None None None 146339371 Common phbH 4-hydroxybenzoate 3-monooxygenase BRADO2352 63 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146338650 Common - putative oligopeptide ABC transporter (ATP binding protein) BRADO1581 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146340458 Common - putative two-component response regulator/receiver (CheY-like protein) BRADO3498 94 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 146338357 Common hemA 5-aminolevulinate synthase BRADO1266 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 146339023 Common hemF coproporphyrinogen III oxidase BRADO1972 112 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 146337644 Common - putative enzyme with metallo-hydrolase/oxidoreductase domain (ycbL-like) BRADO0510 216 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146342281 Common nifX nitrogenase molybdenum-iron protein nifX BRADO5435 33 None None None 146339424 Common - sulfur oxidation protein SoxY BRADO2410 32 COG5501 COG5501, Predicted secreted protein Function unknown 146341780 Common cobM Precorrin-4 C(11)-methyltransferase BRADO4899 202 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 146338916 Common - putative transcriptional regulator, LysR family BRADO1856 110 COG0583 LysR, Transcriptional regulator Transcription 146342789 Nonpathogen - hypothetical protein BRADO5966 1 None None None 146341705 Common - putative carnitine dehydratase/acyl-CoA transferases-related (COG1804) BRADO4810 114 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146337227 Common infB translation initiation factor IF-2 BRADO0053 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 146339560 Common - putative dehydrogenase, NAD(P)-binding domain BRADO2551 156 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146337197 Common - putative Mandelate racemase/muconate lactonizing enzyme family protein BRADO0023 138 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 146337666 Common - putative sulfonate ABC transporter, permease protein (ssuC/ycbM-like) BRADO0532 174 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146341298 Nonpathogen - hypothetical protein BRADO4379 4 None None None 146341810 Nonpathogen - hypothetical protein BRADO4934 1 None None None 146340190 Common fixG nitrogen fixation protein FixG (homologous to rdxB), with 4Fe-4S ferredoxin, iron-sulfur binding domain BRADO3206 79 COG0348 NapH, Polyferredoxin Energy production and conversion 146340399 Nonpathogen - hypothetical protein BRADO3432 3 None None None 146343022 Common - putative conjugal transfer protein; traA BRADO6208 121 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 146343224 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO6434 4 None None None 146338114 Common - NLP/P60 family protein BRADO1010 83 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 146337485 Common - conserved hypothetical protein; putative 2-hydroxychromene-2-carboxylate isomerase BRADO0331 47 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 146340614 Nonpathogen - hypothetical protein BRADO3659 1 None None None 146342846 Common coxF Carbon monoxide dehydrogenase, coxF accessory protein BRADO6026 64 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 146341571 Common - conserved hypothetical protein; putative peroxidase related protein BRADO4672 68 COG2128 COG2128, Uncharacterized conserved protein Function unknown 146343387 Common - putative oxidoreductase; putative Glucose/ribitol oxidoreductase BRADO6616 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337774 Common - putative enoyl-CoA hydratase BRADO0651 164 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146340904 Common - putative TPR repeat protein BRADO3973 185 COG0457 NrfG, FOG: TPR repeat General function prediction only 146342389 Common - hypothetical protein BRADO5546 11 None None None 146338633 Common garD (D)-galactarate dehydrogenase BRADO1562 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 146342555 Common - putative glutathione S-transferase (gstA/gst-like) BRADO5718 109 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342982 Common exoB UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) BRADO6165 231 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 146340577 Nonpathogen - hypothetical protein BRADO3622 1 None None None 146342820 Nonpathogen - hypothetical protein BRADO5999 1 None None None 146338270 Common - putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) BRADO1174 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146340813 Nonpathogen - hypothetical protein BRADO3873 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 146342040 Common - putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO5179 41 None None None 146338729 Common - putative haloacid dehalogenase-like hydrolase, cbbY/cbbZ/gph/yieH family; putative CbbY-like BRADO1662 117 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 146340542 Nonpathogen - conserved hypothetical protein; putative Peptidase M23 family protein; putative signal peptide. BRADO3585 7 None None None 146342172 Common - Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) BRADO5322 202 COG0281 SfcA, Malic enzyme Energy production and conversion 146338665 Common - Conserved hypothetical protein; putative signal peptide BRADO1597 6 None None None 146339794 Common - Putative beta-lactamase BRADO2795 144 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146338761 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO1695 1 None None None 146339953 Common - conserved hypothetical protein; putative signal peptide BRADO2957 23 COG3672 COG3672, Predicted periplasmic protein Function unknown 146341169 Common - putative short-chain dehydrogenase BRADO4242 218 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146343714 Common - Putative Alpha-methylacyl-CoA racemase (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase) BRADO6960 114 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146340559 Nonpathogen - hypothetical protein BRADO3603 1 None None None 146342549 Common thiG thiazole synthase BRADO5711 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 146341665 Common - conserved hypothetical protein; putative Zn-dependent hydrolases, including glyoxylases BRADO4770 21 None None None 146341920 Common - Putative flagellin protein, C-terminus BRADO5055 79 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 146340370 Common - putative Dienelactone hydrolase family protein, putative signal peptide. BRADO3398 26 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146340621 Common HupA DNA-binding protein HU BRADO3667 20 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 146337300 Common uppP undecaprenyl pyrophosphate phosphatase BRADO0129 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 146343102 Common - putative Glyoxalase/Bleomycin resistance protein/dioxygenase domain BRADO6298 36 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146337784 Common - putative Spermidine synthase (methyl transferase) BRADO0662 100 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 146339664 Common - hypothetical protein BRADO2658 26 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 146343569 Nonpathogen - hypothetical protein BRADO6807 2 None None None 146343029 Common - putative transcriptional regulatory protein, LysR family BRADO6217 184 COG0583 LysR, Transcriptional regulator Transcription 146340706 Nonpathogen - hypothetical protein BRADO3758 5 None None None 146340552 Nonpathogen - hypothetical protein BRADO3596 1 None None None 146339930 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2934 3 None None None 146342209 Common - putative permease protein; putative membrane protein; putative exported protein BRADO5361 159 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 146338904 Common - putative Glutathione S-transferase BRADO1844 87 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146341118 Common pepT peptidase T BRADO4189 62 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 146343530 Common - putative transcriptional regulatory protein, AraC family BRADO6765 101 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146343240 Common - putative methionine biosynthesis protein (MetW) BRADO6460 75 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146343675 Common - Putative Major Facilitator Superfamily (MFS) transporter BRADO6918 33 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338613 Common - Putative ABC transporter (ATP-binding protein) BRADO1541 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146340489 Common - hypothetical protein BRADO3531 31 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146338009 Common - Putative ABC transporter (substrate binding protein) BRADO0902 196 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146340385 Nonpathogen - hypothetical protein; putative signal peptide BRADO3418 1 None None None 146339386 Common - conserved hypothetical protein; putative signal peptide; putative membrane protein BRADO2370 5 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 146338025 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO0918 228 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146342941 Common glcF Glycolate oxidase subunit, (Fe-S)protein, GlcF BRADO6122 153 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 146339405 Common dctA C4-dicarboxylate transport protein BRADO2390 158 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 146341943 Common - Putative thioredoxin reductase, FAD/NAD(P)-binding BRADO5079 244 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 146343483 Common - putative cytochrome c-type biogenesis protein; putative membrane protein BRADO6715 9 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 146341085 Common - conserved hypothetical protein; putative signal peptide; putative Nuclear export factor GLE1 domain BRADO4156 25 COG4549 COG4549, Uncharacterized protein conserved in bacteria Function unknown 146337793 Common - Putative transcriptional accessory protein containing S1 RNA-binding domain BRADO0672 156 COG2183 Tex, Transcriptional accessory protein Transcription 146338037 Common - putative transcriptional regulator, TetR family BRADO0930 12 COG1309 AcrR, Transcriptional regulator Transcription 146343529 Common ogt2 O-6-methylguanine-DNA methyltransferase BRADO6764 155 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 146341808 Nonpathogen - hypothetical protein; putative membrane protein BRADO4930 1 None None None 146343083 Common - conserved hypothetical protein; putative coiled-coil domain BRADO6278 14 None None None 146342104 Common - hypothetical protein BRADO5248 27 COG3636 COG3636, Predicted transcriptional regulator Transcription 146338620 Common - Putative ABC transporter (permease protein) BRADO1548 188 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146340484 Common - conserved hypothetical protein; putative C-terminal Lysin domain BRADO3526 44 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 146339143 Common - Putative Nudix hydrolase family protein; putative ADP-ribose pyrophosphatase BRADO2098 46 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146342773 Common serA D-3-phosphoglycerate dehydrogenase BRADO5948 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146338369 Nonpathogen - hypothetical protein BRADO1278 1 None None None 146340269 Common - putative transcriptional regulator, TetR family BRADO3290 67 COG1309 AcrR, Transcriptional regulator Transcription 146341561 Common - conserved hypothetical protein; putative ATPase domain BRADO4661 22 None None None 146342930 Common - putative ErfK/YbiS/YcfS/YnhG protein family BRADO6111 87 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146341800 Common speF ornithine decarboxylase BRADO4919 85 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 146340438 Common - putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain; peptide signal. BRADO3478 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146337483 Common - putative Acetoin(diacetyl) reductase (Acetoin dehydrogenase) (AR) (Meso-2,3-butanediol dehydrogenase); oxidoreductase, short chain dehydrogenase; putative short chain dehydrogenase BRADO0329 108 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146343631 Common - conserved hypothetical protein with CBS domain BRADO6870 160 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 146337186 Common - Conserved hypothetical protein; Putative MmgE/PrpD family protein BRADO0011 61 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 146340805 Common - conserved hypothetical protein; putative amidohydrolase; putative exported protein BRADO3864 41 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146338484 Common - putative cobalamin synthesis protein cobW BRADO1401 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 146341258 Common - putative RNA polymerase sigma subunit BRADO4334 136 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146339148 Common pncA nicotinamidase/pyrazinamidase BRADO2106 118 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146340708 Common glmU bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) BRADO3760 233 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 146338412 Common - putative transcriptional regulatory protein (fragment) BRADO1327 27 None None None 146339967 Common thrS threonyl-tRNA synthetase BRADO2971 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146338492 Common - putative ABC transporter; permease protein BRADO1410 132 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146338605 Common - putative transriptional regulatory protein, LysR family BRADO1533 166 COG0583 LysR, Transcriptional regulator Transcription 146337291 Common - putative TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit) BRADO0118 121 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146343222 Common - putative ectoine hydroxylase (ectD) BRADO6432 37 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 146340218 Nonpathogen - hypothetical protein BRADO3236 4 None None None 146343215 Common - hypothetical protein BRADO6425 17 None None None 146339495 Common - putative transcriptional regulatory protein, AsnC/Lrp family BRADO2484 171 COG1522 Lrp, Transcriptional regulators Transcription 146342101 Nonpathogen - hypothetical protein; putative exported protein BRADO5245 1 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 146338107 Common - putative oligopeptide transport protein (ABC superfamily, peri_bind) BRADO1003 134 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 146337395 Common - malonyl-CoA synthase BRADO0229 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340696 Common - putative transcriptional regulatory protein, XRE family BRADO3747 45 COG3800 COG3800, Predicted transcriptional regulator General function prediction only 146341016 Common pdhA Pyruvate dehydrogenase E1 component, alpha subunit BRADO4087 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 146341838 Common - putative cation-efflux pump BRADO4967 199 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 146337863 Common pyrE orotate phosphoribosyltransferase BRADO0748 132 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 146338976 Common - conserved hypothetical protein; putative signal peptide; putative calcium-binding protein BRADO1923 14 COG5126 FRQ1, Ca2+-binding protein (EF-Hand superfamily) Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only 146339983 Nonpathogen - putative two-component sensor protein with Hpt (Histidine-containing phosphotransfer) domain BRADO2988 7 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 146341992 Common - putative Isochorismatase family protein BRADO5128 76 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146342486 Common - Putative aminopeptidase P BRADO5647 229 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 146341356 Common - putative 3-demethylubiquinone-9 3-O-methyltransferase BRADO4440 45 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146339723 Common - hypothetical protein; putative membrane protein; putative TolA family protein BRADO2721 25 COG3743 COG3743, Uncharacterized conserved protein Function unknown 146338079 Common - Putative ABC-type branched-chain amino acid transporter, periplasmic binding protein BRADO0975 109 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338589 Nonpathogen - hypothetical protein; putative membrane protein BRADO1515 1 None None None 146341635 Common - hypothetical protein; phage-related protein BRADO4738 14 COG4675 MdpB, Microcystin-dependent protein Function unknown 146341191 Nonpathogen - hypothetical protein BRADO4264 7 None None None 146337652 Common - putative ABC transporter, permease protein BRADO0518 25 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146337878 Common - DNA polymerase III subunits gamma and tau BRADO0763 249 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 146341964 Common - Putative Two-component sensor histidine kinase BRADO5100 203 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146337579 Common - conserved hypothetical protein; putative acetyltransferase BRADO0434 97 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146338932 Common tdcD propionate kinase/acetate kinase C, anaerobic BRADO1872 162 COG0282 ackA, Acetate kinase Energy production and conversion 146343721 Common - hypothetical protein BRADO6968 6 None None None 146339461 Common - conserved hypothetical protein; putative signal peptide BRADO2447 5 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146338515 Common - conserved hypothetical protein; nucleotide triphosphate hydrolase domain BRADO1433 42 COG3106 COG3106, Predicted ATPase General function prediction only 146341396 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B BRADO4486 212 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 146337498 Common - conserved hypothetical protein; putative eukaryotic-like DNA topoisomerase I BRADO0345 44 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 146341856 Nonpathogen - hypothetical protein BRADO4987 10 None None None 146343856 Nonpathogen - hypothetical protein BRADO7106 2 None None None 146343464 Common thrC threonine synthase BRADO6693 153 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 146339817 Common - conserved hypothetical protein; putative inner membrane transport protein BRADO2818 83 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 146337364 Common rho transcription termination factor Rho BRADO0197 212 COG1158 Rho, Transcription termination factor Transcription 146340685 Common - putative low-affinity phosphate transport protein BRADO3736 165 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 146337938 Nonpathogen - hypothetical protein; putative membrane protein BRADO0828 1 COG4907 COG4907, Predicted membrane protein Function unknown 146337569 Common - hypothetical protein BRADO0424 55 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 146340262 Common - hypothetical protein BRADO3283 69 COG0730 COG0730, Predicted permeases General function prediction only 146342937 Common glcA glycolate permease (LctP family) BRADO6118 103 COG1620 LldP, L-lactate permease Energy production and conversion 146338870 Common ytfT sugar transport protein (ABC superfamily, membrane) BRADO1809 119 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146341293 Nonpathogen - hypothetical protein BRADO4374 13 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 146339446 Common fixK transcriptional regulator FixK BRADO2432 138 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146341265 Nonpathogen - hypothetical protein; putative secreted protein BRADO4341 11 None None None 146338211 Common - hypothetical protein BRADO1110 143 COG1360 MotB, Flagellar motor protein Cell motility and secretion 146337181 Common - hypothetical protein BRADO0006 22 None None None 146339660 Common - putative Branched-chain amino acid ABC tranpsorter, ATP binding protein BRADO2653 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146342492 Common ftsZ cell division protein FtsZ BRADO5653 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 146343342 Common minE cell division topological specificity factor MinE BRADO6568 73 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 146341737 Common - Putative nitrilase/cyanide hydratase family protein (carbon-nitrogen hydrolase) BRADO4852 196 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146339331 Common - putative ABC transporter, permease protein BRADO2310 196 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146339009 Common - Putative acetyltransferase BRADO1958 75 COG3153 COG3153, Predicted acetyltransferase General function prediction only 146341817 Common - hypothetical protein; putative cbxX/cfqX family protein (N-term) and peptidase (C-term) BRADO4942 246 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146340114 Nonpathogen - hypothetical protein BRADO3129 1 None None None 146338643 Common - putative ABC transporter-like BRADO1574 60 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 146339593 Common - hypothetical protein BRADO2585 58 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 146339526 Nonpathogen - hypothetical protein BRADO2516 2 COG5373 COG5373, Predicted membrane protein Function unknown 146340273 Common - putative threonine tRNA synthetase (fragment) BRADO3294 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146338786 Common cyoB cytochrome o ubiquinol oxidase, subunit I (Ubiquinol oxidase chain A) BRADO1720 166 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 146339672 Common - hypothetical protein BRADO2667 7 COG4944 COG4944, Uncharacterized protein conserved in bacteria Function unknown 146343738 Common - Putative Aminotransferase, class V; putative Serine--glyoxylate aminotransferase BRADO6985 154 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 146340504 Common - Iron-sulfur cluster assembly protein BRADO3546 164 COG0316 IscA, Uncharacterized conserved protein Function unknown 146338246 Common - Putative DNA helicase related protein BRADO1150 81 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 146340850 Common - putative amino-acid ABC transporter, substrate-binding protein BRADO3913 119 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146340129 Common - conserved hypothetical protein; putative signal peptide BRADO3144 139 COG2081 COG2081, Predicted flavoproteins General function prediction only 146337659 Common - hypothetical protein BRADO0525 8 COG3832 COG3832, Uncharacterized conserved protein Function unknown 146339542 Common - short chain dehydrogenase BRADO2533 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146340667 Nonpathogen - hypothetical protein BRADO3717 1 None None None 146338627 Common - Putative transcriptional regulatory protein, GntR family, with a PLP-dependent aminotransferase domain; putative signal peptide. BRADO1555 187 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 146341524 Common - hypothetical protein; putative secreted protein BRADO4621 10 None None None 146342867 Common - Putative ABC transporter (substrate binding protein) BRADO6047 88 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343804 Common - Hypothetical protein, putative Glycosyl transferase BRADO7053 46 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146339994 Nonpathogen - hypothetical protein BRADO2999 1 None None None 146343536 Common - putative esterase/acetylhydrolase; putative secreted protein BRADO6771 48 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 146343120 Common - Putative TonB-dependent receptor protein BRADO6317 92 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 146343708 Common - putative Major Facilitator Superfamily (MFS) transporter; putative sugar transporter BRADO6954 105 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338095 Common - conserved hypothetical protein; putative signal peptide BRADO0991 133 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146342306 Common - hypothetical protein BRADO5461 10 None None None 146338240 Common ruvC Holliday junction resolvase BRADO1144 197 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 146338121 Common - putative pilus assembly protein cpaE BRADO1017 50 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 146337900 Common - Conserved hypothetical protein; putative transcriptional regulator BRADO0787 36 COG1813 COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 Transcription 146340348 Nonpathogen - hypothetical protein; putative signal peptide BRADO3375 1 None None None 146342732 Common fliN flagellar motor switch protein BRADO5902 126 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 146343665 Common - hypothetical protein BRADO6907 18 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 146339168 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2127 1 None None None 146340272 Nonpathogen - hypothetical protein BRADO3293 1 None None None 146343045 Common - putative lysophospholipase L2, (Lecithinase B) BRADO6235 65 COG2267 PldB, Lysophospholipase Lipid metabolism 146337991 Common - conserved hypothetical protein; putative RmlC-like cupin family protein BRADO0883 11 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 146340891 Common - putative ABC transporter, extracellular substrate binding protein BRADO3957 193 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146342154 Common - putative ABC transporter (permease protein) BRADO5304 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 146342603 Common - hypothetical protein; conserved domain RmlC-like cupins BRADO5766 8 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146338018 Common - putative ABC transporter family, HlyB subfamily; putative protease secretion (ATP-binding protein) BRADO0911 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 146341968 Nonpathogen - hypothetical protein BRADO5104 1 None None None 146343175 Nonpathogen - hypothetical protein BRADO6376 1 None None None 146340764 Common - conserved hypothetical protein; possible RARE lipoprotein A family protein (rlpA) BRADO3822 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 146341670 Common - putative oxidoreductase subunit; putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs BRADO4775 110 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146342885 Common - putative Response regulator receiver (CheY-like protein) BRADO6065 220 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146341845 Common fdsG formate dehydrogenase subunit gamma BRADO4975 139 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 146342962 Common gltL glutamate/aspartate ABC transporter (ATP-binding protein) BRADO6145 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 146343774 Common - putative partition protein BRADO7021 83 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146339161 Common - putative branched-chain amino acid ABC transporter, periplasmic substrate-binding protein BRADO2119 142 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342481 Common - hypothetical protein BRADO5641 15 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 146340859 Nonpathogen - hypothetical protein BRADO3923 1 None None None 146342344 Common - putative transcriptional regulatory protein, GntR family BRADO5500 107 COG1802 GntR, Transcriptional regulators Transcription 146338100 Common - putative monooxygenase with luciferase-like ATPase activity BRADO0996 111 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146339293 Common - putative ABC transporter permease protein BRADO2269 138 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146343197 Common - hypothetical protein BRADO6403 8 None None None 146338005 Common - putative amidase BRADO0898 208 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146343615 Common - Putative glucose-methanol-choline (GMC) oxidoreductase; putative choline dehydrogenase (CHD) BRADO6853 91 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146341403 Common - putative 2-nitropropane dioxygenase BRADO4493 92 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 146340833 Nonpathogen - hypothetical protein BRADO3896 3 None None None 146341588 Common - putative sensor histidine kinase with a response regulator receiver domain BRADO4689 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146338169 Common - Sulfite/ferredoxin-nitrite reductase BRADO1067 169 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 146339121 Common - putative Phosphoglycerate mutase BRADO2075 91 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 146343017 Nonpathogen - hypothetical protein BRADO6202 1 None None None 146338456 Common rluD pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) BRADO1372 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 146342498 Common murG N-acetylglucosaminyl transferase BRADO5659 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 146340245 Common - hypothetical protein BRADO3265 47 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 146339901 Common - conserved hypothetical protein; Transglutaminase-like domain, putative cysteine protease. BRADO2903 111 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 146338894 Common - conserved hypothetical protein; putative sensor histidine kinase with a response regulator receiver domain BRADO1833 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342832 Common - conserved hypothetical protein; putative MaoC-like domain BRADO6011 53 COG2030 MaoC, Acyl dehydratase Lipid metabolism 146337708 Common - Putative excinuclease ABC, C subunit BRADO0577 51 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 146337327 Common dapB dihydrodipicolinate reductase BRADO0158 215 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 146343284 Nonpathogen crtW Beta-carotene ketolase (Beta-carotene oxygenase) BRADO6505 9 COG3239 DesA, Fatty acid desaturase Lipid metabolism 146337588 Common - conserved hypothetical protein (fragment) BRADO0444 16 COG3380 COG3380, Predicted NAD/FAD-dependent oxidoreductase General function prediction only 146343554 Common - Putative AMP-dependent synthetase and ligase BRADO6791 223 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146340881 Common - putative sensor histidine kinase (HWE) with PAS and response regulator receiver domains BRADO3947 210 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146342142 Common - acylglycerophosphoethanolamine acyltransferase BRADO5289 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146343370 Common - putative TRAP-type uncharacterized transport system, periplasmic component BRADO6598 83 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146337681 Common - hypothetical protein BRADO0548 6 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146340561 Nonpathogen - hypothetical protein BRADO3605 1 None None None 146341233 Common - conserved hypothetical protein; putative NUDIX hydrolase BRADO4309 46 None None None 146339458 Common - nitrogen fixation protein fixI; calcium ATPase, transmembrane domain BRADO2444 231 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 146341380 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ BRADO4467 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 146338887 Common cheD Chemotaxis protein cheD BRADO1826 87 COG1871 CheD, Chemotaxis protein; stimulates methylation of MCP proteins Cell motility and secretion / Signal transduction mechanisms 146339169 Common dkgB 2,5-diketo-D-gluconate reductase B BRADO2128 178 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 146341854 Common gcvP glycine dehydrogenase BRADO4984 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 146342314 Common - Putative Metallo-beta-lactamase family protein BRADO5469 97 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146338455 Common rpoH RNA polymerase factor sigma-32 BRADO1371 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 146339859 Common - conserved hypothetical protein; putative XdhC/CoxF family protein BRADO2861 110 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 146340253 Common - conserved hypothetical protein; putative alpha-beta hydrolase superfamily; putative patatin-like phospholipase domain. BRADO3274 15 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 146341347 Nonpathogen - hypothetical protein BRADO4431 2 None None None 146341077 Nonpathogen - hypothetical protein BRADO4148 3 None None None 146338170 Common - hypothetical protein BRADO1068 54 COG3749 COG3749, Uncharacterized protein conserved in bacteria Function unknown 146338380 Common - conserved hypothetical protein; putative signal peptide BRADO1292 60 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146342376 Nonpathogen - hypothetical protein BRADO5533 5 None None None 146342177 Nonpathogen - hypothetical protein BRADO5327 2 None None None 146337856 Common chvI two-component transcriptional regulatory protein ChvI BRADO0738 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146338101 Common - putative Flavin reductase BRADO0997 125 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 146341002 Common - putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO4073 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 146337476 Common - putative thioredoxin BRADO0321 228 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 146340078 Common adk adenylate kinase BRADO3087 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 146342155 Nonpathogen - hypothetical protein BRADO5305 1 None None None 146338135 Common - Putative Branched-chain amino acid ABC transporter (permease protein) BRADO1032 163 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146340246 Nonpathogen - hypothetical protein BRADO3267 1 None None None 146343433 Common - putative transcriptional regulator, TetR family BRADO6662 74 COG1309 AcrR, Transcriptional regulator Transcription 146338160 Common - Putative methyl-accepting chemotaxis receptor/sensory transducer BRADO1057 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338892 Common - putative Response regulator, putative serine phosphatase BRADO1831 128 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 146339328 Common - putative ABC transporter, substrate binding protein BRADO2307 76 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146343866 Common - hypothetical protein BRADO7117 6 None None None 146340416 Common - conserved hypothetical protein; putative Rieske [2Fe-2S] domain. BRADO3452 45 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 146339470 Common - putative 3-isopropylmalate dehydrogenase (leuB) BRADO2458 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 146339827 Common - putative Cytochrome b561 family protein BRADO2828 86 COG3038 CybB, Cytochrome B561 Energy production and conversion 146343060 Common shc Squalene-hopene cyclase BRADO6252 43 COG1657 SqhC, Squalene cyclase Lipid metabolism 146341156 Common - conserved hypothetical protein; putative Acyl-CoA N-acyltransferase related protein BRADO4228 11 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 146343784 Nonpathogen - hypothetical protein; putative signal peptide BRADO7032 1 None None None 146341211 Common metQ D-methionine ABC transporter protein, periplasmic binding protein BRADO4285 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 146337373 Common - Conserved hypothetical protein; putative Smr protein/MutS2 C-terminal BRADO0206 50 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 146342993 Common - putative transcriptional regulatory protein, related to MarR family BRADO6176 144 COG1733 COG1733, Predicted transcriptional regulators Transcription 146343826 Common - hypothetical protein BRADO7075 6 None None None 146340436 Common - putative transport protein; putative permease of the drug/metabolite transporter (DMT) superfamily. BRADO3476 76 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 146341799 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase BRADO4918 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 146342559 Nonpathogen - putative collagen-like protein BRADO5722 1 None None None 146341600 Common - conserved hypothetical protein; putative secreted protein BRADO4701 10 None None None 146338247 Common - Putative glutathione S-transferase BRADO1151 94 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146340093 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO3102 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337907 Nonpathogen - hypothetical protein BRADO0795 1 None None None 146341519 Common ugpC putative sugar ABC transporter, ATP-binding protein containing a substrate binding domain in C-terminal BRADO4616 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146340349 Common - putative secretion ATP-binding protein (ABC-type transporter family); putative toxin/protease secretion system BRADO3376 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 146338538 Common - Two-component hybrid sensor and regulator BRADO1458 211 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146341575 Common - putative 3-hydroxymyristoyl-acyl carrier protein dehydratase FabZ-like BRADO4676 177 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 146337273 Nonpathogen - hypothetical protein; putative Excinuclease ABC, C subunit, N-terminal (fragment) BRADO0100 7 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 146339050 Common - conserved hypothetical protein; putative HTH-type transcriptional regulator belonging to the vapA/vapI family. BRADO2003 67 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 146343363 Common - conserved hypothetical protein; putative signal peptide; Putative outer membrane protein precursor BRADO6590 72 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 146338463 Common - catalase, homologous to the Protein srpA precursor BRADO1380 125 COG0753 KatE, Catalase Inorganic ion transport and metabolism 146339815 Common - Putative Alcohol dehydrogenase BRADO2816 163 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146339979 Common folE GTP cyclohydrolase I BRADO2984 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 146341580 Common potF putrescine ABC transporter, periplasmic binding protein BRADO4681 129 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146341644 Nonpathogen - hypothetical protein BRADO4748 3 None None None 146342464 Common - conserved hypothetical protein; putative isoprenylcysteine O-methyltransferase family protein BRADO5623 52 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 146339554 Common - ABC transporter permease protein BRADO2545 164 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146343320 Common - hypothetical protein BRADO6545 49 COG3180 AbrB, Putative ammonia monooxygenase General function prediction only 146338294 Common pntB pyridine nucleotide transhydrogenase (proton pump), beta subunit BRADO1198 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 146339561 Common - putative sugar isomerase (interconverting aldoses and ketoses) BRADO2552 77 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 146337374 Nonpathogen - hypothetical protein BRADO0207 1 None None None 146340034 Common - putative phosphoglycerate mutase family protein BRADO3042 66 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 146338719 Common bchE Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit BRADO1652 102 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 146337610 Nonpathogen - hypothetical protein BRADO0472 3 None None None 146338033 Nonpathogen - hypothetical protein containing two histidine-rich domains; putative signal peptide BRADO0926 1 None None None 146339084 Common - putative dehydrogenase, NAD(P)-binding domain and GroES-like domain BRADO2038 100 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146339606 Common - putative aldolase BRADO2598 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 146340152 Nonpathogen - hypothetical protein BRADO3167 5 COG5331 COG5331, Uncharacterized protein conserved in bacteria Function unknown 146338702 Common bchG bacteriochlorophyll/chlorophyll a synthase BRADO1634 50 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 146340678 Common - Dipeptidyl anminopeptidase BRADO3729 124 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 146342568 Common bfr bacterioferritin (iron storage homoprotein) BRADO5731 113 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 146338443 Nonpathogen - hypothetical protein BRADO1359 1 None None None 146342149 Common - putative transcriptional regulator with a cAMP binding domain, Crp family BRADO5298 172 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146339735 Common cycJ cytochrome c-type biogenesis protein CcmE BRADO2733 95 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 146342834 Nonpathogen - hypothetical protein BRADO6013 3 None None None 146340795 Common - putative GTP-binding protein (hflX) BRADO3854 223 COG2262 HflX, GTPases General function prediction only 146339117 Nonpathogen - conserved hypothetical protein; putative transglycosidase BRADO2071 12 COG3664 XynB, Beta-xylosidase Carbohydrate transport and metabolism 146338709 Common chlL protochlorophyllide reductase iron-sulfur ATP-binding protein BRADO1642 70 COG1348 NifH, Nitrogenase subunit NifH (ATPase) Inorganic ion transport and metabolism 146341589 Common - hypothetical protein BRADO4690 11 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 146340325 Nonpathogen - hypothetical protein BRADO3351 1 None None None 146340987 Common - putative transcriptional regulatory protein, LysR family BRADO4058 175 COG0583 LysR, Transcriptional regulator Transcription 146343009 Common - putative Acetyltransferase BRADO6194 18 COG3153 COG3153, Predicted acetyltransferase General function prediction only 146337243 Common - putative Molybdopterin biosynthesis protein moeB BRADO0069 213 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 146339139 Common - serine acetyltransferase (fragment) BRADO2093 210 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 146337948 Common - conserved hypothetical protein; putative SWIM Zn-finger domain BRADO0838 15 COG4715 COG4715, Uncharacterized conserved protein Function unknown 146341262 Nonpathogen - conserved hypothetical protein, putative membrane protein BRADO4338 1 None None None 146338471 Common - hypothetical protein; partial homology with benzene monooxygenase ferredoxin BRADO1388 13 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 146340632 Common - putative acyl-CoA carboxylase biotin-carrying subunit; alpha chain BRADO3680 233 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 146341133 Common glnB Nitrogen regulatory protein P-II BRADO4204 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 146337404 Common - conserved hypothetical protein; putative general stress protein 26 BRADO0239 36 COG3871 COG3871, Uncharacterized stress protein (general stress protein 26) General function prediction only 146340847 Common - putative amino acid transport protein, ATP-binding protein BRADO3910 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 146338044 Common - conserved hypothetical protein; putative nitroreductase BRADO0937 48 COG0778 NfnB, Nitroreductase Energy production and conversion 146343163 Common ackA Acetate kinase BRADO6361 161 COG0282 ackA, Acetate kinase Energy production and conversion 146343316 Common - hypothetical protein BRADO6541 100 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 146341927 Nonpathogen - hypothetical protein BRADO5062 5 None None None 146343157 Nonpathogen - hypothetical protein BRADO6355 2 None None None 146340353 Nonpathogen - hypothetical protein BRADO3381 3 None None None 146340197 Nonpathogen - hypothetical protein; putative membrane protein BRADO3214 2 None None None 146341566 Common - conserved hypothetical protein; putative ATPase domain BRADO4667 81 COG0433 COG0433, Predicted ATPase General function prediction only 146339510 Common - putative transcriptional regulator, TetR family BRADO2500 20 COG1309 AcrR, Transcriptional regulator Transcription 146343069 Common - Putative Acetyltransferase (GNAT) family protein BRADO6261 57 COG3153 COG3153, Predicted acetyltransferase General function prediction only 146339543 Common yeaU tartrate dehydrogenase BRADO2534 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 146343545 Common phoR two component sensor histidine kinase; phosphate regulon BRADO6782 220 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 146341595 Common - putative alpha-isopropylmalate/homocitrate synthase family transferase BRADO4696 213 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 146337191 Common - putative transcriptional regulatory protein, LysR family BRADO0017 131 COG0583 LysR, Transcriptional regulator Transcription 146340299 Common ksgA dimethyladenosine transferase BRADO3322 242 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 146341711 Nonpathogen - hypothetical protein; Pectin lyase-like (virulence factor-like) BRADO4816 4 None None None 146343802 Nonpathogen - putative Polysaccharide transporter BRADO7051 3 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 146337786 Common - hypothetical protein; putative conserved domain typically associated with flavoprotein oxygenases, DIM6/NTAB family BRADO0664 46 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 146340138 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3153 3 None None None 146342641 Common yeaG conserved hypothetical protein (YeaG); putative Ser protein kinase BRADO5807 70 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 146343117 Common exbD Biopolymer transport exbD protein BRADO6314 123 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 146339921 Common - putative ABC transporter substrate-binding protein BRADO2925 185 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146337808 Common - Putative Aromatic-ring hydroxylase BRADO0687 30 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339203 Common - putative deacetylase BRADO2165 162 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 146338957 Common - Putative component of multidrug efflux system; putative signal peptide BRADO1901 162 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146339181 Common - hypothetical protein BRADO2141 36 COG3921 COG3921, Uncharacterized protein conserved in bacteria Function unknown 146339201 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase BRADO2161 226 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 146341102 Common nuoL NADH dehydrogenase subunit L BRADO4173 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 146343643 Common - Putative ABC transporter, substrate-binding protein; putative branched-chain amino acid transporter BRADO6883 97 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146337200 Common - Putative sulfate transporter conatining a cAMP-binding domain-like BRADO0026 72 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 146340369 Common - putative ABC transporter, ATP-binding protein with duplicated ATPase domains BRADO3397 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 146341812 Common - hypothetical protein with a putative beta-lactamase/transpeptidase-like domain BRADO4936 18 None None None 146339224 Common - conserved hypothetical protein; putative peptide signal BRADO2189 19 COG3672 COG3672, Predicted periplasmic protein Function unknown 146343423 Common - putative transcriptional regulator, AraC family BRADO6652 103 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146338504 Common - conserved hypothetical protein; putative RmlC_like_cupin domain BRADO1422 14 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 146339043 Common - putative protease htpX; putative membrane protein BRADO1996 181 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 146338271 Common - hypothetical protein BRADO1175 9 COG3916 LasI, N-acyl-L-homoserine lactone synthetase Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 146342746 Common napC Periplasmic nitrate reductase, four-heme c-type cytochrome (NapC/NirT) BRADO5918 48 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 146339227 Nonpathogen - putative general secretion pathway protein H BRADO2193 4 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 146340045 Common rplL 50S ribosomal protein L7/L12 BRADO3053 215 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 146340080 Common rpsK 30S ribosomal protein S11 BRADO3089 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 146338962 Nonpathogen - hypothetical protein BRADO1906 3 None None None 146342535 Common - putative glycosyl transferase (group 1) BRADO5697 137 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146343744 Common - putative ABC transporter (substrate-binding protein) BRADO6991 20 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146337429 Common - putative transcriptional regulatory protein, LysR family BRADO0267 190 COG0583 LysR, Transcriptional regulator Transcription 146339235 Common - predicted glycosyl transferase BRADO2201 99 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146340748 Common - 1-aminocyclopropane-1-carboxylate deaminase BRADO3803 77 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 146342446 Common - putative transcriptional regulatory protein, LysR family BRADO5605 162 COG0583 LysR, Transcriptional regulator Transcription 146339237 Common - hypothetical protein BRADO2203 47 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146337551 Common sucD succinyl-CoA synthetase, alpha subunit, NAD(P)-binding BRADO0405 209 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 146341095 Common mtnK methylthioribose kinase BRADO4166 28 COG4857 COG4857, Predicted kinase General function prediction only 146339172 Common - conserved hypothetical protein; putative signal peptide; putative aminohydrolase BRADO2131 51 COG3964 COG3964, Predicted amidohydrolase General function prediction only 146340163 Nonpathogen - putative monoheme cytochrome c sulfur oxidizing protein(SoxX) BRADO3179 11 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146342131 Common - Serine-glyoxylate aminotransferase BRADO5278 160 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 146343088 Common - Putative cytochrome c family protein BRADO6283 58 COG2863 COG2863, Cytochrome c553 Energy production and conversion 146340292 Common - conserved hypothetical protein; putative Aminodeoxychorismate lyase family BRADO3315 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 146342921 Common ubiA prenyltransferase BRADO6102 188 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 146341318 Common ddpA putative dipeptide ABC transporter, periplasmic binding protein BRADO4400 211 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146341514 Common ptsI Phosphotransferase system enzyme I (Phosphoenolpyruvate-protein phosphotransferase) (major BRADO4611 234 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 146337279 Common - Putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpE-like protein BRADO0106 147 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146342853 Common - riboflavin synthase subunit beta BRADO6033 168 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 146342684 Common - putative branched-chain amino acid ABC transporter, substrate-binding protein BRADO5851 88 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146341837 Common - putative NADPH quinone oxidoreductase BRADO4966 192 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146340381 Common - putative high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding protein) BRADO3410 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146342703 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO5870 201 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146340940 Common - putative phosphoglycolate phosphatase; putative Haloacid dehalogenase-like hydrolase BRADO4011 27 COG0546 Gph, Predicted phosphatases General function prediction only 146337864 Common - Putative glutathione S-transferase BRADO0749 98 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146343000 Nonpathogen - hypothetical protein BRADO6184 1 None None None 146337945 Common - hypothetical protein BRADO0835 22 None None None 146338570 Common - Conserved hypothetical protein; putative Asp/Glu/Hydantoin racemase BRADO1491 36 COG3473 COG3473, Maleate cis-trans isomerase Secondary metabolites biosynthesis, transport, and catabolism 146338146 Common ureE Urease accessory protein UreE BRADO1043 61 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 146339822 Common - putative Integral membrane protein, TerC family BRADO2823 98 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 146343532 Nonpathogen - hypothetical protein BRADO6767 4 None None None 146341170 Nonpathogen - hypothetical protein BRADO4243 1 None None None 146342308 Common - conserved hypothetical protein; putative quinoprotein amine dehydrogenase, beta chain-like BRADO5463 84 COG3391 COG3391, Uncharacterized conserved protein Function unknown 146343591 Nonpathogen - conserved hypothetical protein; putative phosphotransferase BRADO6829 4 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 146337198 Common - Putative Glutathione S-transferase BRADO0024 97 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146338895 Common - hypothetical protein BRADO1834 22 COG2855 COG2855, Predicted membrane protein Function unknown 146338728 Common - putative CbbX-like protein, containing AAA-ATPase domain BRADO1661 49 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 146340174 Common - conserved hypothetical protein; putative membrane protein with YeeE/YedE motives BRADO3190 27 None None None 146342795 Common - conserved hypothetical protein; putative signal peptide BRADO5972 11 None None None 146340996 Common ureAB bifunctional urease subunit gamma/beta BRADO4067 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 146341788 Common cobN cobaltochelatase BRADO4907 89 COG1429 CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases Coenzyme metabolism 146338303 Common - putative diguanylate cyclase (GGDEF) BRADO1207 175 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146337177 Common dnaN DNA polymerase III subunit beta BRADO0002 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 146342453 Common - hypothetical protein BRADO5612 26 COG2018 COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid General function prediction only 146341501 Common - putative cation/multidrug efflux pump of the AcrB/AcrD/AcrF family BRADO4595 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146340060 Common rplB 50S ribosomal protein L2 BRADO3069 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 146340586 Nonpathogen - hypothetical protein BRADO3631 1 None None None 146342798 Common - putative glutathione S-transferase (GST); putative maleylacetoacetate isomerase BRADO5975 103 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146339613 Common - Putative gluconolactonase BRADO2605 66 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146340935 Common - putative outer-membrane protein; putative secreted protein BRADO4006 18 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146340903 Nonpathogen - hypothetical protein BRADO3971 1 COG4371 COG4371, Predicted membrane protein Function unknown 146341124 Nonpathogen - hypothetical protein BRADO4195 1 None None None 146339070 Common - hypothetical protein BRADO2024 23 None None None 146342932 Nonpathogen - hypothetical protein BRADO6113 5 None None None 146342948 Common glcD glycolate oxidase, subunit GlcD BRADO6131 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146342826 Common - hypothetical protein BRADO6005 33 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 146340100 Common - putative UDP-glucose 4-epimerase BRADO3109 104 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146343455 Common - conserved hypothetical protein; putative DSBA oxidoreductase/dithiol-disulfide isomerase involved in polyketide biosynthesis BRADO6684 46 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 146342063 Common rfaF ADP-heptose--LPS heptosyltransferase II BRADO5203 103 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 146337531 Common - putative RNA pseudouridine synthase (Uracil hydrolyase) BRADO0385 211 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 146342121 Common - conserved hypothetical protein; putative exported protein; putative ABC-type branched-chain amino acid transport systems (periplasmic component) BRADO5267 47 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342998 Common - Putative UDP-glucose 4-epimerase BRADO6182 176 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146343034 Common - conserved hypothetical protein; putative Cytochrome c region (C-ter) BRADO6222 22 None None None 146343809 Common - putative O-antigen polymerase BRADO7058 9 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 146342939 Nonpathogen - hypothetical protein BRADO6120 18 None None None 146343379 Common - putative aminopeptidase; putative Proline or Methionine dipeptidase BRADO6608 195 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 146340285 Common rpsR 30S ribosomal protein S18 BRADO3308 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 146343734 Common - conserved hypothetical protein; putative signal peptide BRADO6981 95 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146338905 Common - hypothetical protein BRADO1845 35 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 146342269 Common nifS cysteine desulfurase (Nitrogenase metalloclusters biosynthesis protein nifS) BRADO5423 241 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 146340711 Common glmS D-fructose-6-phosphate amidotransferase BRADO3763 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 146338801 Common - putative purine permease ygfU-like (NCS2 family) BRADO1735 128 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 146343612 Nonpathogen - hypothetical protein BRADO6850 2 None None None 146340205 Nonpathogen - Histone-like DNA-binding protein BRADO3223 1 None None None 146341974 Common - putative Permease of the major facilitator superfamily BRADO5110 34 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146342007 Nonpathogen - hypothetical protein; putative signal peptide BRADO5144 1 None None None 146338659 Common - putative oligopeptide ABC transporter (substrate-binding protein) BRADO1590 184 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146339484 Common nrtC Nitrate transport protein; ABC transporter ATP-binding protein BRADO2473 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146342545 Nonpathogen - hypothetical protein BRADO5707 10 None None None 146342253 Nonpathogen - hypothetical protein BRADO5407 3 None None None 146337599 Nonpathogen - hypothetical protein; putative membrane protein BRADO0456 1 None None None 146339778 Nonpathogen - hypothetical protein BRADO2778 2 None None None 146341741 Common - Putative branched-chain amino acid ABC transporter (permease protein) BRADO4856 153 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146342541 Common - putative two component response transcriptional regulator (OmpR family) BRADO5703 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146343412 Nonpathogen - hypothetical protein BRADO6641 1 None None None 146338156 Nonpathogen - hypothetical protein BRADO1053 2 COG4575 ElaB, Uncharacterized conserved protein Function unknown 146339025 Common - hypothetical protein BRADO1974 124 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 146340596 Common - hypothetical protein BRADO3641 10 None None None 146339566 Common - putative methyl-accepting chemotaxis receptor/sensory transducer BRADO2557 155 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338325 Nonpathogen - hypothetical protein BRADO1230 9 None None None 146338313 Common - putative LIPOPROTEIN SIGNAL PEPTIDE BRADO1218 44 COG4188 COG4188, Predicted dienelactone hydrolase General function prediction only 146343268 Common tlpA Thiol:disulfide interchange protein tlpA (Cytochrome c biogenesis protein tlpA) BRADO6488 139 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 146339600 Common - putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like. BRADO2592 175 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146343137 Common - hypothetical protein BRADO6335 34 None None None 146338759 Common hupK Hydrogenase expression/formation protein hupK BRADO1693 14 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 146338777 Common - Putative Isoquinoline 1-oxidoreductase alpha subunit, iorA-like BRADO1711 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146343126 Common - pyruvate decarboxylase BRADO6324 220 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146337958 Common - putative Haloacid dehalogenase-like hydrolase; putative Phosphoglycolate phosphatase BRADO0849 124 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 146341958 Common ttuC Tartrate dehydrogenase/decarboxylase BRADO5094 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 146342236 Common cysE serine acetyltransferase BRADO5389 204 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 146338428 Common - putative transcriptional regulator, ArsR family BRADO1343 52 COG0640 ArsR, Predicted transcriptional regulators Transcription 146340517 Common - threonine dehydratase BRADO3559 217 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 146342655 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO5822 1 None None None 146341781 Common - Putative CobE protein BRADO4900 19 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 146340733 Common - Conserved hypothetical protein, putative Luciferase-alpha subunit BRADO3786 118 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146339766 Common - hypothetical protein BRADO2766 11 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146341771 Common - Putative Flagellar protein fliS BRADO4888 5 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 146338363 Common - putative gas vesicle synthesis protein, GvpF/L-like BRADO1272 18 None None None 146340729 Common - conserved hypothetical protein; possibly involved in transport BRADO3782 96 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 146342240 Common nifH nitrogenase reductase BRADO5394 71 COG1348 NifH, Nitrogenase subunit NifH (ATPase) Inorganic ion transport and metabolism 146342116 Common - putative transcriptional regulator with cAMP binding domain belongs to HTH Crp family BRADO5261 87 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146338787 Common cyoC Cytochrome o ubiquinol oxidase subunit III (Ubiquinol oxidase chain C) BRADO1721 157 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 146341685 Common - putative sugar ABC transporter, permease protein; putative ribose ABC transporter rbsC-like BRADO4790 112 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146342617 Common - putative malonyl-CoA decarboxylase (MCD) BRADO5781 29 None None None 146340877 Nonpathogen - hypothetical protein BRADO3943 1 None None None 146338969 Common - hypothetical protein BRADO1913 25 COG5477 COG5477, Predicted small integral membrane protein Function unknown 146342206 Common - hypothetical protein BRADO5358 98 COG1409 Icc, Predicted phosphohydrolases General function prediction only 146342160 Common - putative poly-beta-hydroxybutyrate polymerase (Poly(3-hydroxybutyrate) polymerase)(PHB/PHA polymerase)(PHB/PHA synthase)(Poly(3-hydroxyalkanoate) polymerase)(Polyhydroxyalkanoic acid synthase) BRADO5310 76 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 146337896 Common oaxA putative inner membrane protein translocase component YidC BRADO0782 214 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 146340309 Nonpathogen - hypothetical protein BRADO3332 1 None None None 146341901 Common fliM flagellar motor switch protein FliM BRADO5035 110 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 146343092 Common - Putative cytochrome c family protein BRADO6287 55 COG2863 COG2863, Cytochrome c553 Energy production and conversion 146343876 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO7127 3 None None None 146340087 Common - putative ABC transporter periplasmic substrate-binding protein BRADO3096 59 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146340604 Common - hypothetical protein; putative signal peptide BRADO3649 3 None None None 146342786 Common - Putative sulfate transporter with a STAS domain (C-terminal) BRADO5963 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 146337874 Nonpathogen - hypothetical protein BRADO0759 1 None None None 146337954 Nonpathogen - hypothetical protein; putative signal peptide BRADO0845 1 None None None 146342169 Nonpathogen - hypothetical protein BRADO5319 2 None None None 146337590 Common - conserved hypothetical protein; putative Xylose isomerase-like BRADO0446 62 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 146343681 Common - hypothetical protein BRADO6924 3 None None None 146342725 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase BRADO5894 219 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 146341434 Common - putative endoribonuclease L-PSP (protein synthesis inhibitor) BRADO4525 90 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146341613 Common rpiA ribose-5-phosphate isomerase A BRADO4714 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 146342470 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5629 1 None None None 146343855 Nonpathogen - hypothetical protein BRADO7105 9 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 146340949 Nonpathogen - hypothetical protein BRADO4020 1 None None None 146337764 Common - ferredoxin II (fragment) BRADO0641 60 None None None 146340821 Common - hypothetical protein BRADO3882 24 COG3827 COG3827, Uncharacterized protein conserved in bacteria Function unknown 146337584 Common - hypothetical protein BRADO0439 2 None None None 146341488 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO4581 148 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146338680 Nonpathogen - hypothetical protein BRADO1612 1 None None None 146339532 Common paaD Phenylacetic acid degradation protein paaD BRADO2522 42 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 146342576 Common - putative ABC transporter ATP-binding protein BRADO5739 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 146343539 Common apaG ApaG BRADO6774 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 146342255 Nonpathogen - hypothetical protein BRADO5409 3 None None None 146337354 Common - conserved hypothetical protein; putative signal peptide, putative diguanylate cyclase (GGDEF) domain BRADO0187 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146339881 Common - Putative xanthine dehydrogenase, FAD binding subunit BRADO2883 54 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146337543 Common - putative transport protein; putative membrane protein BRADO0397 118 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 146339289 Common - Maleylacetate reductase BRADO2265 154 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 146340460 Common accC acetyl-CoA carboxylase biotin carboxylase subunit BRADO3500 234 COG0439 AccC, Biotin carboxylase Lipid metabolism 146340319 Common - hypothetical protein BRADO3342 100 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 146341609 Common - conserved hypothetical protein; putative cupin family protein BRADO4710 67 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146339272 Common - putative oxidoreductase BRADO2247 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146341830 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4959 6 None None None 146339343 Common - hypothetical protein BRADO2324 14 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 146339452 Common - Cytochrome c oxidase polypeptide I; fixN homolog BRADO2438 141 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 146341768 Common - putative basal-body rod modification protein flgD BRADO4885 37 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 146340503 Common - conserved hypothetical protein (domain of unknown function DUF59) BRADO3545 134 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 146342575 Common - hypothetical protein BRADO5738 55 COG2862 COG2862, Predicted membrane protein Function unknown 146342874 Common - putative outer membrane protein precursor BRADO6054 16 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146343297 Nonpathogen - hypothetical protein; putative membrane protein BRADO6520 1 COG2948 VirB10, Type IV secretory pathway, VirB10 components Intracellular trafficking and secretion 146339633 Nonpathogen - hypothetical protein BRADO2626 3 None None None 146340012 Common - N-carbamoyl-D-amino acid hydrolase (D-N-alpha-carbamilase) BRADO3018 173 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146341931 Common msrB methionine sulfoxide reductase B BRADO5066 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 146337905 Nonpathogen - hypothetical protein; putative membrane protein BRADO0793 1 None None None 146338640 Common mcpa Methyl-accepting chemotaxis protein BRADO1571 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339321 Nonpathogen - hypothetical protein BRADO2300 1 None None None 146343754 Common cheY Chemotaxis protein cheY BRADO7001 224 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146338581 Common flhA flagellar biosynthesis protein A BRADO1503 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 146341295 Nonpathogen - hypothetical protein BRADO4376 25 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 146338991 Common - hypothetical protein; putative signal peptide BRADO1939 3 None None None 146338239 Common - hypothetical protein BRADO1143 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 146338556 Common cheB chemotaxis-specific methylesterase BRADO1476 190 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 146339743 Common - putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis. BRADO2742 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146338638 Common gudP D-glucarate permease (MFS family) BRADO1568 196 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146340057 Common rplC 50S ribosomal protein L3 BRADO3066 234 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 146342843 Common - Putative ABC transporter (permease protein) BRADO6023 182 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146342815 Common - Putative transcriptional regulatory protein, LysR family BRADO5992 107 COG0583 LysR, Transcriptional regulator Transcription 146338825 Common - Hypothetical protein; putative molybdenum ABC transporter (ATP-binding protein) (C-ter fragment) BRADO1761 50 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 146337824 Common - putative NAD-dependant oxidoreductase; putative phosphoglycerate dehydrogenase BRADO0705 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 146342734 Common - hypothetical protein with a putative signal peptide; putative pertactin (N-terminal) and outer-membrane immunogenic protein (C-terminal) BRADO5904 23 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146341822 Nonpathogen - hypothetical protein BRADO4951 1 None None None 146341326 Common - conserved hypothetical protein; putative amidotransferase/amidase BRADO4408 82 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 146338180 Common - conserved hypothetical protein, putative ErfK/YbiS/YcfS/YnhG precursor BRADO1078 82 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146338561 Common - putative response regulator receiver (CheY-like protein) BRADO1481 33 COG3947 COG3947, Response regulator containing CheY-like receiver and SARP domains Signal transduction mechanisms 146340121 Common - putative transcriptional regulator, TetR family BRADO3136 57 COG1309 AcrR, Transcriptional regulator Transcription 146337387 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0220 2 None None None 146339299 Common cbbS Ribulose bisphosphate carboxylase small chain (RuBisCO small subunit) BRADO2275 29 COG4451 RbcS, Ribulose bisphosphate carboxylase small subunit Energy production and conversion 146342695 Common ureG urease accessory protein UreG BRADO5862 155 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 146337848 Common - Putative methyl-accepting chemotaxis protein (chemoreceptor) BRADO0729 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337993 Common - Peptidase M29, aminopeptidase II BRADO0885 56 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 146338848 Common - hypothetical protein BRADO1787 10 None None None 146341082 Common lolC Lipoprotein releasing system, transmembrane protein, LolC/E family BRADO4153 163 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 146342884 Common - putative hydrolase; haloacid dehalogenase-like family BRADO6064 76 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 146338927 Common - vanillate O-demethylase oxygenase, iron-sulfur subunit (modular protein=subunit from monooxygenase) (vanA-like) BRADO1867 73 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 146339952 Nonpathogen - hypothetical protein; putative signal peptide BRADO2956 1 None None None 146343278 Common - putative DNA-3-methyladenine glycosidase BRADO6499 89 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 146340441 Common - conserved hypothetical protein; putative DJ-1/PfpI family protein BRADO3481 76 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146340477 Common upp uracil phosphoribosyltransferase BRADO3518 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 146343772 Nonpathogen - hypothetical protein; putative signal peptide BRADO7019 1 None None None 146343659 Common - putative serine protease BRADO6901 29 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 146342595 Common - putative transcriptional regulatory protein (HTH-type), LuxR family BRADO5758 16 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 146342897 Common - hypothetical protein BRADO6078 29 COG4321 COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis General function prediction only 146338370 Common gvpK Gas vesicle synthesis protein K BRADO1279 19 None None None 146338831 Common modA molybdenum ABC transporter (substrate-binding protein) BRADO1767 101 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 146342415 Common hflC Protease activity modulator HflK BRADO5574 212 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 146343395 Common - putative flagellar basal-body rod protein (flgC) BRADO6624 67 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 146341227 Common - hypothetical protein BRADO4303 17 None None None 146341886 Common - putative glutathione S-transferase P subunit BRADO5020 16 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146343262 Common - putative transposase, probably encoded by an unidentified IS element protein BRADO6482 155 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 146340799 Common - putative transcriptional regulatory protein, IclR family BRADO3858 86 COG1414 IclR, Transcriptional regulator Transcription 146339588 Common - acyl-CoA synthetase BRADO2579 217 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337775 Common - putative acyl-CoA dehydrogenase BRADO0652 142 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146339247 Nonpathogen - hypothetical protein BRADO2214 1 None None None 146341218 Common - putative alpha-ketoglutarate-dependent taurine dioxygenase (TauD-like) (2-aminoethanesulfonate dioxygenase) (Sulfate starvation-induced protein 3) (SSI3) BRADO4292 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146338450 Common - putative short-chain dehydrogenase BRADO1366 224 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146340882 Common - putative formate dehydrogenase (C-terminal), related to acid resistance with formate dehydrogenase/DMSO reductase, domains 1-3 and ADC-like domain BRADO3948 174 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 146342561 Common - hypothetical protein BRADO5724 128 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 146337742 Common - Putative citrate synthase BRADO0614 191 COG0372 GltA, Citrate synthase Energy production and conversion 146339011 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1960 3 None None None 146339067 Common - conserved hypothetical protein; putative TPR repeat domain BRADO2021 138 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 146342272 Common - hypothetical protein BRADO5426 7 None None None 146340157 Common - putative YeeE and YedE family membrane protein; putative SoxT protein BRADO3172 30 None None None 146343018 Nonpathogen - hypothetical protein BRADO6203 1 None None None 146339399 Common - putative RND efflux membrane fusion protein BRADO2384 176 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146342096 Common metK S-adenosylmethionine synthetase BRADO5239 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 146342249 Common - Putative carboxymethylenebutenolidase(Dienelactone hydrolase; DLH) BRADO5403 34 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146340613 Nonpathogen - hypothetical protein BRADO3658 1 None None None 146339317 Nonpathogen - hypothetical protein BRADO2295 1 None None None 146342392 Common - Putative ABC-transporter (ATP-binding protein) BRADO5549 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146337516 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO0367 3 None None None 146341593 Common - hypothetical protein BRADO4694 133 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 146339519 Common - putative oligopeptide ABC transporter (ATP-binding protein) BRADO2509 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338024 Common - hypothetical protein BRADO0917 42 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146342195 Nonpathogen - hypothetical protein BRADO5347 2 None None None 146342526 Common - putative permease of the drug/metabolite transporter (DMT) superfamily BRADO5688 16 COG2510 COG2510, Predicted membrane protein Function unknown 146338487 Common - putative dihydrodipicolinate synthase BRADO1404 228 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 146340810 Common ispDF IspD/ispF bifunctional enzyme BRADO3869 196 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 146337512 Nonpathogen - hypothetical protein BRADO0363 3 None None None 146337749 Nonpathogen - hypothetical protein BRADO0623 2 None None None 146341530 Common oxa5 Beta-lactamase (OXA-5), class D BRADO4627 38 COG2602 COG2602, Beta-lactamase class D Defense mechanisms 146338259 Common - Putative pyrimidine reductase BRADO1163 63 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 146339304 Common csoS1C major carboxysome shell protein 1C (Carbon dioxide concentrating mechanism protein) BRADO2280 46 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 146341115 Common nuoA NADH dehydrogenase subunit A BRADO4186 162 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 146343170 Common - hypothetical protein; putative membrane protein; putative phosphatase BRADO6368 10 None None None 146341736 Nonpathogen - hypothetical protein BRADO4844 1 None None None 146338384 Nonpathogen - putative General secretion pathway protein H BRADO1296 4 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 146341908 Common - Putative dihydrokaempferol 4-reductase (NAD-dependent epimerase/dehydratase) BRADO5042 158 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146343134 Nonpathogen - hypothetical protein BRADO6332 1 None None None 146337621 Common - hypothetical protein BRADO0486 60 COG2135 COG2135, Uncharacterized conserved protein Function unknown 146342368 Common dctM TRAP-type C4-dicarboxylate transport system, large permease component (dctM subunit) BRADO5525 133 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146343705 Nonpathogen - hypothetical protein BRADO6951 1 None None None 146342438 Common - Putative branched-chain amino acid ABC transporter (substrate-binding protein) BRADO5597 153 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342538 Nonpathogen - hypothetical protein BRADO5700 6 None None None 146338335 Common - hypothetical protein; Subtilisin-like serine proteases domain BRADO1243 21 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 146338392 Common - Putative multicopper oxidase BRADO1305 32 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 146339628 Common - hypothetical protein BRADO2621 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339406 Common - conserved hypothetical protein; putative amidohydrolase; putative signal peptide BRADO2391 43 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146340817 Common - hypothetical protein BRADO3878 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 146341543 Common - putative permease of the major facilitator superfamily (MFS) BRADO4641 104 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146340762 Nonpathogen - hypothetical protein BRADO3819 1 None None None 146338998 Common mdoG glucan biosynthesis protein G BRADO1947 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 146343052 Common - putative transcriptional regulatory protein, related to MarR family BRADO6243 14 COG1733 COG1733, Predicted transcriptional regulators Transcription 146341475 Common - putative D-amino-acid dehydrogenase (DadA-like) BRADO4568 129 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146340467 Common - conserved hypothetical protein; putative signal peptide, putative outer membrane protein BRADO3507 93 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 146343169 Common - hypothetical protein; putative membrane protein BRADO6367 3 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 146341208 Common - putative ferrodoxin homolog (AsfB-like) BRADO4282 14 COG1146 COG1146, Ferredoxin Energy production and conversion 146340724 Common - conserved hypothetical protein; putative signal peptide BRADO3777 15 COG5342 COG5342, Invasion protein B, involved in pathogenesis General function prediction only 146341761 Common cyoB cytochrome o ubiquinol oxidase, subunit I BRADO4878 172 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 146340870 Nonpathogen - hypothetical protein BRADO3935 1 None None None 146339390 Common - putative 5-amino-6-(5-phosphoribosylamino)uracil reductase BRADO2375 41 COG1985 RibD, Pyrimidine reductase, riboflavin biosynthesis Coenzyme metabolism 146342052 Common - putative Sulfate adenylate transferase, subunit 2 (NodP-like) BRADO5192 128 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 146340660 Common - putative transcriptional regulatory protein, LysR family BRADO3708 163 COG0583 LysR, Transcriptional regulator Transcription 146338439 Common - hypothetical protein BRADO1355 3 None None None 146337296 Common - putative Quinoprotein ethanol dehydrogenase family protein BRADO0123 81 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146340501 Common sufD sufD, needed for fhuF Fe-S center production/stability BRADO3543 173 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 146337264 Common trpB tryptophan synthase subunit beta BRADO0091 225 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 146341328 Common - putative regulator (HTH, AraC-type) BRADO4410 122 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146342927 Common - putative Glycosyl transferase, family 2 BRADO6108 185 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146338265 Common - hypothetical protein BRADO1169 18 None None None 146340127 Common - nodN-like protein BRADO3142 73 COG2030 MaoC, Acyl dehydratase Lipid metabolism 146338583 Common - putative Zinc-containing alcohol dehydrogenase superfamily (fragment) BRADO1505 17 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 146342136 Common - short chain dehydrogenase BRADO5283 175 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146339799 Nonpathogen - conserved hypothetical protein; putative RmlC-like cupin domain BRADO2800 13 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 146339744 Common - putative two-component sensor histidine kinase; putative heavy-metal sensor (Cu/Zn) BRADO2743 211 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146340373 Common - hypothetical protein BRADO3401 28 COG5579 COG5579, Uncharacterized conserved protein Function unknown 146339878 Nonpathogen - hypothetical protein BRADO2880 1 None None None 146341261 Common - putative ABC-type ribose transport system, auxiliary component BRADO4337 30 COG4154 FucU, Fucose dissimilation pathway protein FucU Carbohydrate transport and metabolism 146338699 Nonpathogen - hypothetical protein BRADO1631 1 None None None 146343571 Common fdxB 2Fe-2S ferredoxin (FdII) BRADO6809 90 COG0633 Fdx, Ferredoxin Energy production and conversion 146337220 Common - conserved hypothetical protein; putative transcriptional regulatory protein HTH type BRADO0046 40 COG1396 HipB, Predicted transcriptional regulators Transcription 146341432 Common dinB DNA polymerase IV BRADO4523 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 146339781 Nonpathogen - hypothetical protein BRADO2782 3 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 146342807 Common - putative Haloacid dehalogenase/epoxide hydrolase BRADO5984 171 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 146337399 Common sdhA succinate dehydrogenase flavoprotein subunit BRADO0234 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 146340264 Common - putative transcriptional regulatory protein, AraC/XylS family BRADO3285 54 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146341067 Common pyrH Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) BRADO4138 245 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 146343668 Common - Putative lipase/esterase BRADO6911 118 COG0657 Aes, Esterase/lipase Lipid metabolism 146343260 Nonpathogen - hypothetical protein; putative signal peptide BRADO6480 1 None None None 146339814 Nonpathogen - hypothetical protein BRADO2815 1 None None None 146340704 Nonpathogen - Putative cyclic beta-1-3, beta-1-6-glucan synthesis regulatory protein, ndvD-like BRADO3755 5 None None None 146337298 Nonpathogen - hypothetical protein BRADO0125 2 None None None 146341802 Nonpathogen - hypothetical protein BRADO4921 3 None None None 146342409 Common serB Phosphoserine phosphatase (PSP) (O-phosphoserine phosphohydrolase) (PSPase) BRADO5568 150 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 146342961 Common - D-amino acid aminotransferase BRADO6144 156 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 146337528 Common - conserved hypothetical protein; putative secreted protein BRADO0382 7 COG4978 COG4978, Transcriptional regulator, effector-binding domain/component Transcription / Signal transduction mechanisms 146343629 Common - putative ABC transporter, substrate binding protein; possible branched chain amino acid binding protein BRADO6868 92 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146341076 Common - putative outer-membrane protein precursor BRADO4147 22 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146337660 Common clpP ATP-dependent Clp protease proteolytic subunit BRADO0526 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146339100 Common - hypothetical protein BRADO2054 105 COG2135 COG2135, Uncharacterized conserved protein Function unknown 146342981 Nonpathogen - hypothetical protein BRADO6164 1 None None None 146343346 Common - putative ABC-type branched-chain amino acid transport system, periplasmic component BRADO6573 72 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146337490 Common ggt gamma-glutamyltranspeptidase precursor BRADO0336 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 146341713 Common - putative acyltransferase; putative membrane protein BRADO4818 87 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146342638 Nonpathogen - hypothetical protein BRADO5803 4 None None None 146340893 Common - putative ABC transporter, permease protein BRADO3959 222 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146343283 Nonpathogen - putative ABC transporter (permease protein) BRADO6504 12 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146342622 Common - hypothetical protein BRADO5787 30 None None None 146339630 Common - hypothetical protein BRADO2623 86 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 146341014 Nonpathogen - hypothetical protein BRADO4085 4 None None None 146337305 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0135 4 None None None 146339385 Common - hypothetical protein BRADO2369 25 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 146343047 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6237 2 None None None 146342098 Common - conserved hypothetical protein with a TPR motif and a caspase domain; putative exported protein BRADO5241 103 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146342157 Common - hypothetical protein BRADO5307 150 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 146339334 Common - 3-hydroxybutyryl-CoA dehydrogenase BRADO2315 159 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 146339643 Common - hypothetical protein BRADO2636 11 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 146341991 Common - hypothetical protein BRADO5127 12 COG4317 COG4317, Uncharacterized protein conserved in bacteria Function unknown 146343381 Common dan D-aminoacylase (N-acyl-D-amino-acid deacylase) BRADO6610 97 COG3653 COG3653, N-acyl-D-aspartate/D-glutamate deacylase Secondary metabolites biosynthesis, transport, and catabolism 146342496 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase BRADO5657 205 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 146342942 Common glcE glycolate oxidase, subunit GlcE BRADO6123 139 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146341843 Common - conserved hypothetical protein; putative membrane protein with YeeE/YedE motives BRADO4973 52 COG2391 COG2391, Predicted transporter component General function prediction only 146342552 Common - conserved hypothetical protein; putative translation initiation inhibitor BRADO5714 31 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146338690 Nonpathogen pufB Light harvesting 1 beta subunit BRADO1622 9 None None None 146337911 Common - conserved hypothetical protein, putative DHS-like NAD/FAD-binding domain BRADO0799 12 None None None 146338177 Common - Putative patatin-like phospholipase BRADO1075 52 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 146341724 Common - conserved hypothetical protein with an aminopeptidase-like domain (COG4310) BRADO4829 14 COG4310 COG4310, Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain General function prediction only 146342509 Common - hypothetical protein BRADO5671 33 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 146342315 Common - conserved hypothetical protein; putative signal peptide BRADO5470 22 COG5501 COG5501, Predicted secreted protein Function unknown 146342861 Common - putative Two-component transcriptional regulator BRADO6041 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146337360 Common parA chromosome partitioning protein BRADO0193 228 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146337832 Common radC DNA repair protein RadC BRADO0713 178 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 146341039 Common trpC indole-3-glycerol-phosphate synthase (IGPS) BRADO4110 218 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 146340487 Common - conserved hypothetical protein, putative peroxiredoxin domain BRADO3529 207 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146340750 Common - putative acetyltransferase BRADO3807 14 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146343282 Common - putative ABC transporter ( ATP-binding protein) BRADO6503 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146339356 Common ligJ 4-oxalomesaconate hydratase BRADO2337 37 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146343105 Nonpathogen - hypothetical protein BRADO6302 2 None None None 146341497 Common - conserved hypothetical protein; putative ATPase BRADO4590 50 COG3899 COG3899, Predicted ATPase General function prediction only 146338418 Common - hypothetical protein BRADO1333 20 COG4297 COG4297, Uncharacterized protein containing double-stranded beta helix domain Function unknown 146343620 Common - Putative ABC transporter, ATP-binding protein BRADO6859 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146338808 Common dppB Dipeptide transport system permease protein dppB (ABC transporter) BRADO1742 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146337777 Common - Putative short-chain dehydrogenase/reductase (SDR) family protein; putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO0654 226 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146341194 Nonpathogen - putative transposase BRADO4268 1 None None None 146342457 Nonpathogen - hypothetical protein; putative signal peptide BRADO5616 3 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146342510 Common - putative ABC multidrug transport system, fused ATPase and permease domain BRADO5672 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 146343192 Common - hypothetical protein BRADO6396 14 COG3831 COG3831, Uncharacterized conserved protein Function unknown 146337731 Common - Hypothetical protein; putative PE-PGRS family protein BRADO0603 17 None None None 146337726 Common - putative transcriptional regulatory protein, MarR family. BRADO0598 113 COG1846 MarR, Transcriptional regulators Transcription 146341874 Common - hypothetical protein BRADO5006 2 None None None 146341162 Nonpathogen - hypothetical protein BRADO4234 14 COG2043 COG2043, Uncharacterized protein conserved in archaea Function unknown 146339127 Common - conserved hypothetical protein; putative acetyltransferase BRADO2081 21 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 146343858 Common - putative RNA polymerase sigma factor protein BRADO7108 12 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146339769 Common - putative acyl-CoA dehydrogenase family protein BRADO2769 115 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341464 Nonpathogen - conserved hypothetical protein, putative membrane protein BRADO4556 4 None None None 146337574 Common nadD nicotinic acid mononucleotide adenyltransferase BRADO0429 99 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 146338434 Common - hypothetical protein BRADO1349 40 COG3931 COG3931, Predicted N-formylglutamate amidohydrolase Amino acid transport and metabolism 146339571 Common - conserved hypothetical protein; putative signal peptide BRADO2562 85 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146338003 Common - Conserved hypothetical protein; putative transcriptional regulatory protein BRADO0896 24 COG5631 COG5631, Predicted transcription regulator, contains HTH domain (MarR family) Transcription 146340167 Common - putative sulfur/thiosulfate oxidation protein (SoxB) BRADO3183 131 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 146343453 Common - conserved hypothetical protein; putative cell division protein yjbQ BRADO6682 139 COG0432 COG0432, Uncharacterized conserved protein Function unknown 146340279 Common - replicative DNA helicase BRADO3302 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 146341693 Common - putative sugar ABC transporter, permease protein BRADO4798 135 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146340192 Nonpathogen - hypothetical protein BRADO3209 1 None None None 146342162 Common - conserved hypothetical protein with CBS domain BRADO5312 176 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 146339539 Common - hypothetical protein BRADO2530 88 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 146341556 Nonpathogen - hypothetical protein BRADO4654 3 None None None 146339439 Common - hypothetical protein BRADO2425 44 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 146338935 Common hemE uroporphyrinogen decarboxylase BRADO1875 179 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 146342038 Common - conserved hypothetical protein; putative RmlC-like cupin domain BRADO5176 22 None None None 146342886 Common ribF riboflavin biosynthesis protein ribF; bifunctional : flavokinase; FAD synthetase BRADO6066 211 COG0196 RibF, FAD synthase Coenzyme metabolism 146337288 Common - conserved hypothetical protein; putative OstA-like protein BRADO0115 32 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 146342664 Nonpathogen - conserved hypothetical protein; putative potassium-transporting ATPase, KdpF subunit BRADO5831 1 None None None 146338007 Common - Conserved hypothetical protein; putative VBCS domain repeats BRADO0900 114 COG4254 COG4254, Uncharacterized protein conserved in bacteria Function unknown 146338084 Common - putative transcriptional regulator, IclR family BRADO0980 55 COG1414 IclR, Transcriptional regulator Transcription 146338978 Common - conserved hypothetical protein; putative signal peptide; putative TonB domain BRADO1925 65 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 146343199 Nonpathogen - hypothetical protein BRADO6405 2 None None None 146338591 Common - putative methyl-accepting chemotaxis protein BRADO1518 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339863 Common - hypothetical protein BRADO2865 15 COG4954 COG4954, Uncharacterized protein conserved in bacteria Function unknown 146341941 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5077 4 None None None 146343537 Common - conserved hypothetical protein; putative secreted protein BRADO6772 9 None None None 146337235 Common fabI Enoyl-[acyl-carrier-protein] reductase [NADH] (NADH-dependent enoyl-ACP reductase) BRADO0061 221 COG0623 FabI, Enoyl- acyl-carrier-protein 146339639 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase BRADO2632 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 146340909 Common - conserved hypothetical protein; putative transmembrane protein BRADO3978 82 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 146340179 Nonpathogen - hypothetical protein; putative signal peptide BRADO3195 1 None None None 146343217 Common - putative Isomerase/Decarboxylase related protein family; putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase BRADO6427 175 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146343502 Common - conserved hypothetical protein; putative ICC-like phosphoesterase BRADO6734 50 COG1407 COG1407, Predicted ICC-like phosphoesterases General function prediction only 146340382 Nonpathogen - hypothetical protein BRADO3414 2 None None None 146340694 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3745 3 None None None 146340819 Common - 3-methyladenine DNA glycosylase BRADO3880 80 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 146341667 Common - conserved hypothetical protein with VWA domain containing CoxE-like protein; COG3552 Protein containing von Willebrand factor type A (vWA) domain BRADO4772 31 COG3552 CoxE, Protein containing von Willebrand factor type A (vWA) domain General function prediction only 146338667 Common - Putative ABC transporter (permease protein) BRADO1599 197 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146340812 Nonpathogen - hypothetical protein BRADO3871 1 None None None 146337487 Common - hypothetical protein BRADO0333 20 COG3644 COG3644, Uncharacterized protein conserved in bacteria Function unknown 146341257 Nonpathogen - hypothetical protein BRADO4333 3 None None None 146339552 Common - high-affinity branched-chain amino acid transport protein (ABC transporter ATP-binding protein) BRADO2543 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146341026 Common - putative transposase, probably encoded by an unidentified IS element protein BRADO4097 155 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 146339486 Common nasD nitrite reductase [NAD(P)H], large subunit BRADO2475 197 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 146340451 Common - hypothetical protein BRADO3491 34 COG1284 COG1284, Uncharacterized conserved protein Function unknown 146340015 Common - putative ABC transporter permease protein; putative oligopeptide/dipeptide ABC transporter BRADO3021 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146343728 Common - Putative multidrug efflux transporter, AcrB/AcrD/AcrF family BRADO6975 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146338124 Common - Putative pilus assembly protein, cpaB BRADO1020 55 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 146343871 Common - putative HlyD-family secretion protein BRADO7122 148 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146339605 Common - Putative hypothetical oxidoreductase BRADO2597 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 146342009 Nonpathogen - hypothetical protein BRADO5146 1 None None None 146342977 Nonpathogen - hypothetical protein BRADO6160 1 None None None 146341393 Nonpathogen - hypothetical protein; putative membrane protein BRADO4481 1 None None None 146343024 Common - Putative phage integrase/recombinase BRADO6212 18 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146337418 Common - putative alkaline phosphatase (phoD); putative signal peptide BRADO0256 61 COG3540 PhoD, Phosphodiesterase/alkaline phosphatase D Inorganic ion transport and metabolism 146339925 Common - putative glutathione S-transferase GSTF2 (GST-II) BRADO2929 79 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342775 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5950 3 None None None 146341647 Common - conserved hypothetical protein; putative COG3206, uncharacterized protein involved in exopolysaccharide biosynthesis BRADO4751 15 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 146343243 Common hisC histidinol-phosphate aminotransferase BRADO6463 238 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 146339944 Nonpathogen - hypothetical protein BRADO2948 1 None None None 146339969 Common - putative inner membrane transport protein BRADO2974 102 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146337600 Common - hypothetical protein BRADO0458 5 None None None 146343127 Common - Putative Mandelate racemase/muconate lactonizing enzyme family protein BRADO6325 104 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 146337795 Common - Putative di-haem cytochrome c peroxidase BRADO0674 96 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 146342752 Common msrA methionine sulfoxide reductase A BRADO5925 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 146338054 Common - hypothetical protein BRADO0949 23 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 146337237 Common fabA 3-hydroxydecanoyl-(acyl carrier protein) dehydratase BRADO0063 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 146342491 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase BRADO5652 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 146338116 Common - conserved hypothetical protein; putative signal peptide BRADO1012 79 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 146338975 Nonpathogen - hypothetical protein; putative signal peptide BRADO1920 1 None None None 146342105 Common - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase BRADO5249 43 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 146341463 Common - hypothetical protein BRADO4555 31 COG5458 COG5458, Uncharacterized conserved protein Function unknown 146337423 Nonpathogen - Mercuric transport protein (Mercury ion transport protein) (fragment) BRADO0261 1 None None None 146343367 Common - putative short-chain dehydrogenase; putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO6595 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146343526 Common garR tartronate semialdehyde reductase (TSAR) (2-hydroxy-3-oxopropionate reductase) BRADO6761 154 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146341332 Common ihfA integration host factor alpha-subunit (IHF-alpha) BRADO4416 192 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 146338512 Common cyaA Ferredoxin:Adenylate/Guanylate cyclase BRADO1430 71 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146339195 Common clpS ATP-dependent Clp protease adaptor BRADO2155 118 COG2127 COG2127, Uncharacterized conserved protein Function unknown 146341146 Common rplM 50S ribosomal protein L13 BRADO4217 225 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 146342600 Common - putative transcriptional regulator AraC/XylS family, with a AraC_E_bind effector binding domain. BRADO5763 79 COG3708 COG3708, Uncharacterized protein conserved in bacteria Function unknown 146340839 Common mdtC Multidrug resistance protein mdtC (Multidrug transporter mdtC) BRADO3902 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146341358 Common - putative universal stress protein (Usp) BRADO4442 99 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 146340027 Common - putative transcriptional regulator, TetR family BRADO3034 12 COG1309 AcrR, Transcriptional regulator Transcription 146339677 Nonpathogen - hypothetical protein BRADO2672 1 None None None 146341084 Common - putative Copper resistance protein; putative fusion protein containing a copC-like domain (N-ter) and a copD-like domain (C-ter) BRADO4155 26 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 146337182 Common - hypothetical protein BRADO0007 71 COG3000 ERG3, Sterol desaturase Lipid metabolism 146338622 Common - oxydoreductase (2Fe-2S ferredoxin like subunit) BRADO1550 14 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 146342341 Common - putative cyclase BRADO5497 61 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 146342068 Common - Putative ABC transporter (permease and ATP-binding protein) BRADO5208 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 146339805 Common - hypothetical protein BRADO2806 16 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 146340669 Common - putative glutathione S-transferase enzyme with thioredoxin-like domain BRADO3719 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342017 Common - UDP-glucose/GDP-mannose dehydrogenase family protein; putative Capsular polysaccharide biosynthesis protein BRADO5154 205 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 146341517 Common dhaL PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL (Glycerone kinase) (DHA kinase) BRADO4614 76 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 146341286 Common - putative alkanesulfonate ABC transporter, substrate binding protein BRADO4365 47 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146341042 Common ctpA Carboxy-terminal-processing protease precursor (C-terminal-processing protease) BRADO4113 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 146339916 Common - putative ABC transporter (permease protein); putative membrane protein BRADO2920 221 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342257 Common - putative Aminotransferase, DegT/DnrJ/EryC1/StrS family BRADO5411 190 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 146342771 Common - conserved hypothetical protein; putative extracellular ligand-binding receptor BRADO5945 89 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339996 Nonpathogen - hypothetical protein BRADO3001 1 None None None 146339333 Common - hypothetical protein BRADO2312 18 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 146343712 Common - putative carbon-monoxide dehydrogenase large subunit, coxL-like protein BRADO6958 107 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146339683 Nonpathogen - hypothetical protein BRADO2678 7 None None None 146343654 Common - Putative branched-chain amino acid ABC transporter, permease protein BRADO6896 161 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146341573 Nonpathogen - hypothetical protein BRADO4674 3 None None None 146342217 Common - hypothetical protein BRADO5369 27 None None None 146338486 Common - hypothetical protein BRADO1403 200 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146340788 Common nthB Nitrile hydratase subunit beta (Nitrilase) (NHase) BRADO3846 17 None None None 146338077 Common - Putative hydroxypyruvate reductase; Putative glycerate kinase BRADO0973 85 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 146338470 Common aldB aldehyde dehydrogenase BRADO1387 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146343313 Nonpathogen - hypothetical protein BRADO6538 6 None None None 146340756 Common - putative phosphoglycerate dehydrogenase BRADO3813 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146338762 Common hypB hydrogenase-3 accessory protein for metallocenter assembly with P-loop containing NTP hydrolase domain BRADO1696 122 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 146340922 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase BRADO3993 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 146340378 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO3407 136 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146339520 Common - putative oligopeptide ABC transporter (permease protein) BRADO2510 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146341696 Common - putative transcription regulator (EryD-like) BRADO4801 69 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 146343295 Nonpathogen - hypothetical protein; putative membrane protein BRADO6517 1 None None None 146340020 Common - hypothetical protein BRADO3026 11 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 146338213 Common - hypothetical protein BRADO1112 36 COG3752 COG3752, Predicted membrane protein Function unknown 146339467 Common glgA glycogen synthase BRADO2453 155 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 146342673 Common - putative cation efflux transporter BRADO5840 37 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 146338477 Common rbsA ABC transporter, ATP binding subunit (putative high-affinity D-ribose transport) BRADO1394 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146340699 Common - Probable RhtB family transporter, amino acid efflux BRADO3750 119 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 146338655 Common - Putative oligopeptide ABC transporter (permease protein) BRADO1586 217 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342184 Nonpathogen - hypothetical protein; putative signal peptide BRADO5334 1 None None None 146338956 Common - putative transport protein (MFS superfamily); putative tartrate transporter BRADO1900 80 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 146339410 Common - putative L-sorbosone dehydrogenase BRADO2395 75 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 146338233 Nonpathogen - conserved hypothetical protein; putative signal peptide; YchN-like BRADO1133 5 COG1416 COG1416, Uncharacterized conserved protein Function unknown 146340098 Common - putative ABC transporter permease protein BRADO3107 181 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146339440 Common - putative diguanylate cyclase (GGDEF) BRADO2426 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146341652 Common - hypothetical protein; putative glycosyltransferase BRADO4756 19 None None None 146339693 Common - hypothetical protein BRADO2689 139 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146337283 Common - putative Acetyltransferase, GNAT family BRADO0110 8 COG3818 COG3818, Predicted acetyltransferase, GNAT superfamily General function prediction only 146343325 Nonpathogen - hypothetical protein BRADO6550 1 None None None 146337707 Common ubiG 3-demethylubiquinone-9 3-methyltransferase BRADO0576 160 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146343426 Nonpathogen - hypothetical protein BRADO6655 1 None None None 146340062 Common rplV 50S ribosomal subunit protein L22 BRADO3071 210 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 146343210 Common - glucose-methanol-choline oxidoreductase family protein BRADO6420 90 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146343392 Common - putative transcriptional regulator, putative sugar-binding domain BRADO6621 61 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 146341455 Common clpS ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA substrate specificity BRADO4546 118 COG2127 COG2127, Uncharacterized conserved protein Function unknown 146338873 Common - dihydroxy-acid dehydratase BRADO1812 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146340779 Common - putative ABC transporter (ATP-binding protein) BRADO3837 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146340549 Nonpathogen - hypothetical protein BRADO3592 4 COG2339 COG2339, Predicted membrane protein Function unknown 146339229 Nonpathogen - Putative general secretion pathway protein J BRADO2195 5 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 146342395 Common - putative Rhodanese-related sulfurtransferase BRADO5552 69 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146338350 Common - putative phage-like integrase BRADO1258 101 COG0582 XerC, Integrase DNA replication, recombination, and repair 146339884 Common - conserved hypothetical protein; putative HNH endonuclease:HNH nuclease BRADO2886 98 COG1403 McrA, Restriction endonuclease Defense mechanisms 146339832 Nonpathogen - hypothetical protein BRADO2833 1 None None None 146343485 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO6717 5 None None None 146338769 Common - putative transport protein, yfdC-like BRADO1703 39 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 146342406 Common ilvI acetolactate synthase 3 catalytic subunit BRADO5564 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146341279 Common - hypothetical protein BRADO4357 56 COG3665 COG3665, Uncharacterized conserved protein Function unknown 146341381 Common relA GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) BRADO4468 206 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 146341419 Common rnr ribonuclease R BRADO4509 192 COG0557 VacB, Exoribonuclease R Transcription 146341624 Common - putative TRAP C4-dicarboxylate transport system permease, DctM subunit (large permease component) BRADO4727 129 COG4664 FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component Secondary metabolites biosynthesis, transport, and catabolism 146341281 Common ssuA putative alkanesulfonate ABC transporter, substrate binding protein BRADO4360 92 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146337253 Common - Conserved Hypothetical protein; Putative Bifunctional ATPase/phosphotransferase, cell wall biosynthesis BRADO0080 190 COG3178 COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases General function prediction only 146337647 Common - hypothetical protein BRADO0513 30 COG5321 COG5321, Uncharacterized protein conserved in bacteria Function unknown 146339178 Common - hypothetical protein BRADO2138 30 COG4446 COG4446, Uncharacterized protein conserved in bacteria Function unknown 146342210 Common - conserved hypothetical protein; putative ABC-type Fe3+ transport system; putative exported protein BRADO5362 76 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 146340010 Common - putative 3-hydroxyisobutyrate dehydrogenase BRADO3016 173 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146343795 Common - putative bi-domain oxidoreductase (N-ter: Zinc-binding dehydrogenase/C-ter:NAD-binding oxydoreductase) BRADO7044 143 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146342287 Common - hypothetical protein, putative Response regulator BRADO5442 14 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146341188 Common - conserved hypothetical protein; putative secreted/membrane protein BRADO4261 72 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 146341819 Common gcl glyoxylate carboligase BRADO4946 221 COG3960 COG3960, Glyoxylate carboligase General function prediction only 146339674 Common - Conserved hypothetical protein; putative membrane protein; Putative diguanylate cyclase (GGDEF domain) BRADO2669 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146343696 Nonpathogen - hypothetical protein BRADO6941 1 None None None 146337883 Common - conserved hypothetical proteine; putative Excinuclease ABC, C subunit, N-terminal (fragment) BRADO0768 37 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 146339911 Common - enoyl-CoA hydratase BRADO2915 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146341308 Nonpathogen - putative phage tail region protein BRADO4389 24 None None None 146342179 Nonpathogen - conserved hypothetical protein (putative granule-associated protein) BRADO5329 6 None None None 146343079 Common crcB Camphor resistance protein CrcB BRADO6272 135 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 146337392 Common - putative aminotransferase (aatC) BRADO0225 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146341310 Common - putative alpha-glucosidase BRADO4392 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 146341338 Nonpathogen - hypothetical protein BRADO4422 11 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146339844 Common - putative sensor histidine kinase with PAS/PAC and Response regulator receiver domains BRADO2845 200 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146340547 Common aroG phospho-2-dehydro-3-heoxyheptonate aldolase BRADO3590 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 146341429 Common pleD response regulator PleD BRADO4520 224 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146340270 Common - putative oxidoreductase, short-chain dehydrogenase/reductase family BRADO3291 211 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146341742 Common - Putative branched-chain amino acid ABC transporter (permease protein) BRADO4857 142 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146340411 Common hbdA 3-hydroxybutyryl-CoA dehydrogenase BRADO3444 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 146342283 Common nifE nitrogenase molybdenum-cofactor synthesis protein nifE BRADO5437 59 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146339899 Common - putative oxidoreductase BRADO2901 230 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146338226 Common cbbT transketolase BRADO1126 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 146340656 Nonpathogen - hypothetical protein BRADO3704 1 None None None 146337710 Common - hypothetical protein BRADO0579 44 COG2510 COG2510, Predicted membrane protein Function unknown 146339426 Common - sulfide dehydrogenase BRADO2412 101 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 146337962 Common - putative Glutamine amidotransferase, class-I BRADO0854 133 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 146338098 Common metH B12-dependent methionine synthase BRADO0994 176 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 146337695 Common phbB acetoacetyl-coA reductase BRADO0563 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146338343 Nonpathogen - hypothetical protein BRADO1251 5 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 146343147 Common - putative General secretion pathway protein H, GspH BRADO6345 17 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 146340443 Nonpathogen - hypothetical protein BRADO3483 8 COG3608 COG3608, Predicted deacylase General function prediction only 146341060 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase BRADO4131 165 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 146338827 Common - Conserved hypothetical protein; putative molybdenum ABC transporter (ATP-binding protein) (fragment) BRADO1763 19 None None None 146341615 Nonpathogen - hypothetical protein BRADO4717 3 None None None 146341951 Common - Putative mandelate racemase/muconate lactonizing enzyme family BRADO5087 116 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 146339479 Common - putative sensor histidine kinase BRADO2468 50 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146342075 Nonpathogen - hypothetical protein BRADO5216 2 None None None 146341335 Common - hypothetical protein BRADO4419 23 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 146343836 Nonpathogen - hypothetical protein BRADO7086 1 None None None 146339705 Nonpathogen - hypothetical protein BRADO2702 6 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146338747 Common hupN Hydrogenase nickel incorporation protein hupN BRADO1681 37 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 146337216 Common - putative phosphate starvation-inducible protein, PhoH-like protein BRADO0042 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 146343736 Nonpathogen - hypothetical protein BRADO6983 3 None None None 146339374 Common - hypothetical protein BRADO2356 185 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146340563 Common - hypothetical protein BRADO3607 4 None None None 146337315 Common - hypothetical protein BRADO0146 100 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 146338664 Common - hypothetical protein BRADO1596 24 COG4312 COG4312, Uncharacterized protein conserved in bacteria Function unknown 146341421 Common - putative NUDIX hydrolase BRADO4511 39 None None None 146342309 Common - putative ABC transporter (ATP-binding protein) BRADO5464 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146340032 Nonpathogen - hypothetical protein BRADO3040 1 None None None 146340069 Common rplE 50S ribosomal protein L5 BRADO3078 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 146340331 Common - hypothetical protein BRADO3358 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 146343303 Common - Putative beta-lactamase family protein; putative 6-aminohexanoate-dimer hydrolase BRADO6526 71 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146342151 Nonpathogen - conserved hypothetical protein; putative cytochrome c BRADO5301 9 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146338495 Common ompR two-component response transcriptional regulator (OmpR family) BRADO1413 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146341404 Common - putative transcriptional regulatory protein, LysR family BRADO4494 186 COG0583 LysR, Transcriptional regulator Transcription 146338281 Common pyk pyruvate kinase BRADO1185 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 146339508 Common - conserved hypothetical protein; putative transposase BRADO2497 29 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342246 Common - conserved hypothetical protein; BolA-like protein BRADO5400 82 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 146338858 Common - putative ABC transporter substrate-binding protein BRADO1797 203 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146339396 Common - hypothetical protein BRADO2381 4 None None None 146342906 Common - putative Adenylate cyclase BRADO6087 98 COG3899 COG3899, Predicted ATPase General function prediction only 146338739 Nonpathogen - hypothetical protein BRADO1672 1 None None None 146342369 Common dctQ TRAP-type C4-dicarboxylate transport system, small permease component (dctQ subunit) BRADO5526 54 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 146340857 Common pbpC Penicillin-binding protein 1C (PBP-1C); Penicillin-insensitive transglycosylase (Peptidoglycan TGase)(N-terminal); Transpeptidase-like module (C-terminal) BRADO3920 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 146340418 Nonpathogen - hypothetical protein BRADO3454 1 None None None 146340575 Nonpathogen - hypothetical protein BRADO3620 1 None None None 146339156 Common - putative Isoquinoline 1-oxidoreductase BRADO2114 119 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146342322 Common - conserved hypothetical protein; ethD like-protein BRADO5477 14 None None None 146339072 Nonpathogen - hypothetical protein BRADO2026 1 None None None 146342648 Common - putative 4-alpha-glucanotransferase (malQ-like) BRADO5815 117 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 146340974 Common - putative Sec-independent protein translocase protein TatC BRADO4045 202 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 146338274 Common - hypothetical protein BRADO1178 64 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 146341366 Nonpathogen - hypothetical protein BRADO4451 2 None None None 146341369 Common - putative fumarate reductase flavoprotein BRADO4455 39 COG3573 COG3573, Predicted oxidoreductase General function prediction only 146338408 Common - hypothetical protein BRADO1323 25 COG2259 COG2259, Predicted membrane protein Function unknown 146338947 Nonpathogen - hypothetical protein BRADO1890 1 None None None 146338910 Nonpathogen - hypothetical protein BRADO1850 2 None None None 146339525 Common - conserved hypothetical protein; probable hydrolase BRADO2515 106 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342514 Common - putative transcriptional regulator with metal-binding domain (Helix-turn-helix protein, CopG family); putative transcriptional repressor of nickel transport, nickel-responsive (nikR) BRADO5676 61 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 146339892 Common - conserved hypothetical protein; putative Usg protein BRADO2894 24 COG5425 COG5425, Usg protein, probable subunit of phosphoribosylanthranilate isomerase Amino acid transport and metabolism 146342605 Common - conserved hypothetical protein; putative Poly-beta-hydroxyalkanoate/butyrate (PHA/PHB) depolymerase BRADO5769 44 COG4553 DepA, Poly-beta-hydroxyalkanoate depolymerase Lipid metabolism 146337812 Common fpr Ferredoxin--NADP reductase (=Flavodoxin reductase) BRADO0691 88 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 146341792 Common cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase BRADO4911 129 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 146342462 Common - hypothetical protein BRADO5621 10 COG4539 COG4539, Predicted membrane protein Function unknown 146342334 Common iorB Isoquinoline 1-oxidoreductase beta subunit BRADO5489 114 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146340977 Common - hypothetical protein BRADO4048 141 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 146342460 Nonpathogen - Conserved hypothetical protein; putative signal peptide BRADO5619 4 None None None 146343361 Common ispH1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 BRADO6588 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 146340645 Common - putative response regulator receiver protein (CheY-like) BRADO3693 52 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146341415 Common - conserved hypothetical protein; putative phospholipase BRADO4505 35 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 146339733 Nonpathogen - hypothetical protein BRADO2731 1 None None None 146340336 Common - hypothetical protein BRADO3363 15 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146342968 Common - putative NADH-dependent Flavin Oxidoreductase BRADO6151 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 146340423 Common - putative acyl-CoA dehydrogenase. BRADO3459 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146340682 Common - putative ABC transporter, permease protein; putative branched-chain amino acid transport permease BRADO3733 149 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146342086 Nonpathogen - hypothetical protein; putative membrane protein BRADO5228 3 None None None 146338846 Nonpathogen - hypothetical protein BRADO1785 1 None None None 146338524 Common - Putative sulfopyruvate decarboxylase beta subunit BRADO1443 28 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146343515 Common - putative Electron transport protein (SCO1/SenC/PrrC-like) BRADO6747 107 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 146338035 Common - acyl-CoA synthetase BRADO0928 220 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337406 Common - hypothetical protein BRADO0242 66 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146343492 Common - acetyl-CoA acetyltransferase BRADO6724 181 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146339262 Nonpathogen - putative transposase BRADO2233 4 None None None 146338600 Common - Putative Kynureninase BRADO1528 93 COG3844 COG3844, Kynureninase Amino acid transport and metabolism 146337672 Common - beta-ketoadipyl CoA thiolase BRADO0538 174 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146337441 Common - putative short chain dehydrogenase/reductase family member BRADO0281 229 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146340494 Common - conserved hypothetical protein; putative membrane protein; putative LytTr DNA-binding domain BRADO3536 12 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 146343007 Common - putative Acetyltransferase BRADO6192 12 COG0456 RimI, Acetyltransferases General function prediction only 146341441 Common - conserved hypothetical protein; putative nicotinic acid mononucleotide (NMN) biosynthesis protein BRADO4532 64 COG4111 COG4111, Uncharacterized conserved protein General function prediction only 146341751 Common - conserved hypothetical protein; putative hydantoin racemase or nodulation protein nolU BRADO4867 31 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 146337457 Common - hypothetical protein BRADO0300 16 COG4223 COG4223, Uncharacterized protein conserved in bacteria Function unknown 146338996 Nonpathogen - hypothetical protein BRADO1945 6 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146340482 Common - putative aminotransferase BRADO3524 204 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146338327 Common - putative membrane protein, NnrS-like. BRADO1232 57 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 146338820 Common dgoA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase BRADO1754 123 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 146340861 Nonpathogen - hypothetical protein BRADO3925 1 None None None 146340807 Common ntrC Nitrogen assimilation regulatory protein BRADO3866 218 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343499 Common - conserved hypothetical protein; putative secreted protein BRADO6731 28 None None None 146340223 Common - hypothetical protein BRADO3242 7 None None None 146337452 Common - putative transposase from insertion sequence BRADO0292 24 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 146340524 Common - putative transcriptional regulatory protein, LacI family BRADO3566 113 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146342986 Common - conserved hypothetical protein; putative MlrC domain BRADO6169 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 146339669 Common - Putative enoyl-CoA hydratase BRADO2663 178 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146340809 Common - putative tRNA-dihydrouridine synthase (Nitrogen regulation protein nifR3) BRADO3868 209 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 146342488 Common ligA DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) BRADO5649 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 146342711 Common soxB sarcosine oxidase, beta subunit BRADO5878 82 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146342533 Nonpathogen - hypothetical protein BRADO5695 2 None None None 146342915 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) BRADO6096 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 146340519 Common - putative ABC sugar transporter (substrate binding protein); putative exported protein BRADO3561 72 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146341564 Common hpcB 3,4-dihydroxyphenylacetate 2,3-dioxygenase (Homoprotocatechuate 2,3-dioxygenase) (HPC dioxygenase) BRADO4665 22 COG3384 COG3384, Uncharacterized conserved protein Function unknown 146338183 Common - hypothetical protein BRADO1081 128 COG1678 COG1678, Putative transcriptional regulator Transcription 146337188 Common - putative transcriptional regulatory protein, AraC family BRADO0013 39 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146340994 Common ureG urease accessory protein UreG BRADO4065 160 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 146341363 Common - putative cation efflux system protein (Cobalt-zinc-cadmium resistance CzcD-like), CDF family BRADO4447 165 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 146343339 Nonpathogen - hypothetical protein BRADO6565 12 COG1433 COG1433, Uncharacterized conserved protein Function unknown 146340047 Common rpoC DNA-directed RNA polymerase subunit beta' BRADO3055 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 146338068 Common - feruloyl-CoA synthase BRADO0963 194 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340689 Common - putative hydantoin-racemase BRADO3740 43 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 146337532 Common ftsY Cell division transporter substrate-binding protein FtsY (Signal recognition particle receptor) BRADO0386 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 146341820 Common - Putative adenine deaminase BRADO4947 71 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 146339167 Common - hypothetical protein BRADO2126 45 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 146341377 Common rnc ribonuclease III (modular protein) BRADO4463 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 146342441 Common - hypothetical protein BRADO5600 15 COG3164 COG3164, Predicted membrane protein Function unknown 146339970 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2975 2 None None None 146343769 Common ipdC indole-3-pyruvate decarboxylase BRADO7016 221 COG3961 COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only 146338985 Common - Putative short chain dehydrogenase BRADO1933 157 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337563 Common atpG F0F1 ATP synthase subunit gamma BRADO0418 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 146338473 Nonpathogen - hypothetical protein BRADO1390 3 None None None 146339205 Common - putative Beta-lactamase BRADO2167 50 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146343750 Common - putative two-component transcriptional regulator, LuxR family BRADO6997 224 COG4566 TtrR, Response regulator Signal transduction mechanisms 146339045 Common - hypothetical protein BRADO1998 35 COG4315 COG4315, Uncharacterized protein conserved in bacteria Function unknown 146338182 Common - conserved hypothetical protein; putative signal peptide BRADO1080 61 COG4233 COG4233, Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis Posttranslational modification, protein turnover, chaperones / Energy production and conversion 146337615 Nonpathogen - hypothetical protein BRADO0477 2 None None None 146338959 Common - putative transcriptional regulator, TetR family BRADO1903 39 COG1309 AcrR, Transcriptional regulator Transcription 146337806 Common - putative transcriptional regulatory protein, MarR family. BRADO0685 112 COG1846 MarR, Transcriptional regulators Transcription 146342225 Common - alkylhydroperoxidase, AhpD protein BRADO5377 27 COG2128 COG2128, Uncharacterized conserved protein Function unknown 146342744 Common napA periplasmic nitrate reductase, large subunit (NapA) BRADO5916 188 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 146343524 Common - hypothetical protein BRADO6759 7 COG3224 COG3224, Uncharacterized protein conserved in bacteria Function unknown 146338737 Nonpathogen - hypothetical protein, putative DNA-binding domain BRADO1670 5 COG1598 COG1598, Uncharacterized conserved protein Function unknown 146340169 Common - putative sulfite oxidase cytochrome subunit (SoxD) BRADO3185 27 COG3258 COG3258, Cytochrome c Energy production and conversion 146343645 Common - conserved hypothetical protein; protein containing a von Willebrand factor type A (VWA) domain; putative signal peptide BRADO6887 46 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 146338880 Common - putative L-arabinose transport system permease protein araH BRADO1819 113 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 146342385 Common - Putative secreted protein related to heme utilisation BRADO5542 54 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 146338314 Common - probable ABC transporter permease protein BRADO1219 170 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146339923 Common - putative transcriptional regulatory protein, Ars family BRADO2927 84 COG0640 ArsR, Predicted transcriptional regulators Transcription 146337986 Common - Putative Short-chain dehydrogenase/reductase (SDR) family protein; putative Glucose/ribitol dehydrogenase BRADO0878 66 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146343115 Common - hypothetical protein BRADO6312 20 COG5338 COG5338, Uncharacterized protein conserved in bacteria Function unknown 146337192 Common - putative short-chain dehydrogenases/reductases (SDR) family protein BRADO0018 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146340617 Nonpathogen - hypothetical protein; putative signal peptide BRADO3662 2 None None None 146341099 Common - putative Biotin--[acetyl-CoA-carboxylase] synthetase (Biotin--protein ligase), birA-like protein BRADO4170 217 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 146342895 Common - conserved hypothetical protein; putative signal peptide BRADO6076 12 None None None 146338499 Common - conserved hypothetical protein (putative NAD-dependent aldehyde dehydrogenases) BRADO1417 51 COG3762 COG3762, Predicted membrane protein Function unknown 146343694 Common - hypothetical protein BRADO6939 5 None None None 146341508 Common - putative dipeptide ABC transporter, permease protein (fragment) BRADO4603 107 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338614 Common - Putative ABC transporter (substrate binding protein) BRADO1542 64 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146341291 Common - conserved hypothetical protein; putative glutathione synthase BRADO4372 23 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 146339762 Nonpathogen - hypothetical protein; Putative TPR domain protein BRADO2762 2 COG4785 NlpI, Lipoprotein NlpI, contains TPR repeats General function prediction only 146340959 Common - putative TauD/TfdA family dioxygenase BRADO4030 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146337344 Common - hypothetical protein BRADO0177 26 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342810 Common - putative transcriptional regulator, TetR family BRADO5987 104 COG1309 AcrR, Transcriptional regulator Transcription 146342279 Common - conserved hypothetical protein (DUF683) BRADO5433 12 COG5420 COG5420, Uncharacterized conserved small protein containing a coiled-coil domain Function unknown 146343108 Common - putative Multidrug resistant protein BRADO6305 11 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146337570 Common ctpA Carboxy-terminal-processing protease precursor (C-terminal-processing protease) BRADO0425 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 146341473 Common - putative polysaccharide deacetylase BRADO4566 93 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146342690 Nonpathogen - hypothetical protein; putative membrane protein BRADO5857 4 None None None 146342584 Common - conserved hypothetical protein; putative membrane protein; putative transglycosylase-associated protein BRADO5747 24 COG2261 COG2261, Predicted membrane protein Function unknown 146339183 Common - putative magnesium/cobalt transport protein BRADO2143 160 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 146339239 Common - putative alginate o-acetyltransferase AlgI BRADO2205 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 146343462 Common - putative ribosomal-protein-alanine N-acetyltransferase (rimJ-like) BRADO6691 125 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146340961 Common - putative phytoene synthase (terpenoid synthase) BRADO4032 50 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 146339615 Common - hypothetical protein BRADO2607 43 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 146340499 Nonpathogen - hypothetical protein BRADO3541 2 None None None 146342451 Common - Conserved hypothetical protein; putative Thioesterase superfamily BRADO5610 33 COG0824 FcbC, Predicted thioesterase General function prediction only 146343162 Common - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase BRADO6360 148 COG0280 Pta, Phosphotransacetylase Energy production and conversion 146340889 Common - two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like BRADO3955 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146341639 Nonpathogen - hypothetical protein BRADO4742 11 COG3313 COG3313, Predicted Fe-S protein General function prediction only 146343036 Common - putative NADH dehydrogenase (quinone) BRADO6224 205 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 146339454 Nonpathogen - cytochrome oxidase subunit, FixQ BRADO2440 2 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 146341048 Common - Putative Molybdopterin biosynthesis protein moeA BRADO4119 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 146342324 Nonpathogen - hypothetical protein BRADO5479 2 None None None 146343031 Common - putative amino acid efflux protein, LysE family BRADO6219 107 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 146340985 Common - putative sensor histidine kinase with PAS/PAC and response regulator receiver domains BRADO4056 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146341630 Common - putative periplasmic mannitol-binding protein; putative Trap-T transport system, dctP subunit BRADO4733 91 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 146337337 Common - hypothetical protein; putative methyl transferase BRADO0169 13 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 146338198 Common oppD Oligopeptide transport protein (ABC superfamily, ATP-binding protein) BRADO1096 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340610 Nonpathogen - hypothetical protein; putative vacuolar ATP synthase 16 kDa proteolipid subunit fragment BRADO3655 1 None None None 146341591 Common psd phosphatidylserine decarboxylase BRADO4692 95 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 146340998 Common ureE urease accessory protein UreE BRADO4069 6 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 146342791 Common - putative haemagglutinin-like (or adhesin-like) with a signal peptide BRADO5968 66 None None None 146338175 Common cysA sulfate/thiosulfate ABC transporter, ATP-binding component BRADO1073 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 146340917 Common cysK pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) BRADO3987 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 146338770 Common - putative transcriptional regulatory protein, GntR family BRADO1704 134 COG1802 GntR, Transcriptional regulators Transcription 146339757 Nonpathogen - hypothetical protein BRADO2757 1 None None None 146343011 Common - putative glycosyltransferase BRADO6196 5 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 146339886 Nonpathogen - hypothetical protein BRADO2888 1 None None None 146341869 Nonpathogen - hypothetical protein BRADO5001 1 None None None 146338700 Common bchP geranylgeranyl reductase BRADO1632 32 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 146342524 Common macB putative macrolide ABC transporter, fusion of ATP-binding (N-terminal) and membrane (C-terminal) domains BRADO5686 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 146342828 Common pth peptidyl-tRNA hydrolase BRADO6007 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 146339434 Nonpathogen - hypothetical protein BRADO2420 1 None None None 146342855 Common proC pyrroline-5-carboxylate reductase BRADO6035 212 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 146338791 Common regA Two-component response regulator; Putative Photosynthetic apparatus regulatory protein regA BRADO1725 192 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 146340606 Common - hypothetical protein BRADO3651 8 None None None 146337623 Common - putative methyltransferase BRADO0488 57 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 146341385 Common - putative thiol-specific antioxidant related protein (thiol peroxidase Bcp) BRADO4472 70 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146340942 Common - conserved hypothetical protein; putative signal peptide BRADO4013 18 None None None 146337522 Common trmD tRNA (Guanine-N(1)-)-methyltransferase BRADO0376 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 146341707 Common - putative exopolysaccharide polymerization protein, ExoP-like BRADO4812 153 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 146337757 Nonpathogen - hypothetical protein BRADO0632 2 None None None 146340884 Nonpathogen - hypothetical protein BRADO3950 1 None None None 146341025 Nonpathogen - hypothetical protein BRADO4096 1 None None None 146339302 Common - carboxysome peptide A BRADO2278 24 COG4576 CcmL, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 146338950 Common - conserved hypothetical protein; putative outer membrane protein BRADO1893 114 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146337894 Common - hypothetical protein BRADO0780 12 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 146337225 Common nusA transcription elongation factor NusA BRADO0051 218 COG0195 NusA, Transcription elongation factor Transcription 146340172 Common - hypothetical protein BRADO3188 26 COG1416 COG1416, Uncharacterized conserved protein Function unknown 146340508 Common - hypothetical protein BRADO3550 27 COG3548 COG3548, Predicted integral membrane protein Function unknown 146343071 Common - Conserved hypothetical protein; putative Endoribonuclease L-PSP domain BRADO6263 85 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146341650 Common - conserved hypothetical protein; putative oxidoreductase, aldo/keto reductase family BRADO4754 168 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146342857 Common - Putative 4-oxalocrotonate tautomerase BRADO6037 3 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 146341392 Common - Conserved hypothetical protein; putative signal peptide; putative porin precursor BRADO4479 15 None None None 146341140 Common - Putative Amidohydrolase family protein; putative hippurate hydrolase (Benzoylglycine amidohydrolase) BRADO4211 169 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 146339820 Common - Conserved Hypothetical protein; putative Adenylate cyclase with a CHAD domain BRADO2821 64 COG3025 COG3025, Uncharacterized conserved protein Function unknown 146342879 Common moaE Molybdenum cofactor biosynthesis protein E BRADO6059 156 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 146340933 Common - putative outer-membrane protein; putative secreted protein BRADO4004 19 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146337982 Common - Putative ABC transporter (ATP-binding protein) BRADO0874 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146342267 Common - hypothetical protein BRADO5421 18 None None None 146339252 Common - hypothetical protein; putative transglycosylase BRADO2222 116 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 146340726 Common - putative malonate transporter BRADO3779 72 COG0679 COG0679, Predicted permeases General function prediction only 146343732 Common - Putative Zn-dependent hydrolase BRADO6979 73 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146342035 Common - Conserved hypothetical protein; putative aminoglycoside phosphotransferase family protein BRADO5173 6 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 146338220 Common - putative thiamine phosphate pyrophosphorylase (thiamin phosphate synthase/diphosphorylase) BRADO1119 35 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 146341122 Common - conserved hypothetical protein; putative metallo-phosphoesterase domain BRADO4193 4 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 146337690 Nonpathogen - hypothetical protein BRADO0558 10 None None None 146339359 Common ligI 2-pyrone-4,6-dicarboxylic acid hydrolase BRADO2340 42 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146343593 Common - Putative sensor histidine kinase BRADO6831 214 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146337846 Common ftrA transcriptional activator FtrA BRADO0727 135 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146337434 Common - putative N-acetyltransferase BRADO0274 39 COG0456 RimI, Acetyltransferases General function prediction only 146343435 Common - putative aldehyde or xanthine dehydrogenase, FAD-binding subunit (YagS-like) BRADO6664 90 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146343458 Common atpE F0F1 ATP synthase subunit C BRADO6687 11 None None None 146343135 Common - hypothetical protein; putative signal peptide BRADO6333 11 None None None 146339114 Common - putative CDP-tyvelose-2-epimerase BRADO2068 231 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 146341104 Common nuoJ NADH dehydrogenase subunit J BRADO4175 161 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 146342337 Common - Putative 4Fe-4S ferredoxin, fixG-like protein BRADO5493 76 COG0348 NapH, Polyferredoxin Energy production and conversion 146343742 Common - putative ABC transporter (permease protein) BRADO6989 149 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146342624 Common - amidase BRADO5789 207 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146338545 Common - ribonuclease Z BRADO1465 118 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 146340104 Common - hypothetical protein BRADO3113 20 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 146339404 Common - putative extracellular solute-binding protein BRADO2389 56 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146341079 Common - conserved hypothetical protein; putative Helix-Turn-Helix motif BRADO4150 41 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 146341399 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A BRADO4489 219 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146338048 Common - Putative enoyl-CoA hydratase BRADO0943 177 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146341129 Common tig trigger factor BRADO4200 208 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 146337881 Nonpathogen - hypothetical protein BRADO0766 2 None None None 146340425 Common - putative methyl-accepting chemotaxis receptor/sensory transducer protein. BRADO3461 93 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341954 Common - conserved hypothetical protein; putative signal peptide; putative Caspase-like domain BRADO5090 23 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146343844 Common - putative Transcriptional regulator, GntR family BRADO7094 118 COG1802 GntR, Transcriptional regulators Transcription 146340293 Common - hypothetical protein BRADO3316 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 146342871 Common - putative Ribonuclease T2 family protein BRADO6051 37 COG3719 Rna, Ribonuclease I Translation, ribosomal structure and biogenesis 146337565 Common atpC ATP synthase subunit epsilon, membrane-bound, F1 sector BRADO0420 178 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 146338445 Nonpathogen - hypothetical protein BRADO1361 4 None None None 146338465 Common - hypothetical protein; putative signal peptide BRADO1382 8 None None None 146339515 Common - putative ABC transporter substrate-binding protein BRADO2505 203 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146343653 Common - Putative branched-chain amino acid ABC transporter, permease protein BRADO6895 132 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146338022 Common - Transcriptional Regulator, LysR family; putative Glycine cleavage system transcriptional activator (Gcv operon activator) BRADO0915 178 COG0583 LysR, Transcriptional regulator Transcription 146338041 Common - putative acyl-CoA dehydrogenase BRADO0934 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146339109 Nonpathogen - conserved hypothetical protein; putative signal peptide; putative glycosyltransferase BRADO2063 11 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 146338305 Nonpathogen - hypothetical protein BRADO1209 2 None None None 146340076 Common rplO 50S ribosomal protein L15 BRADO3085 209 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 146338798 Nonpathogen - hypothetical protein; putative signal peptide BRADO1732 1 None None None 146340091 Nonpathogen - hypothetical protein BRADO3100 4 None None None 146338162 Common glcB malate synthase G BRADO1059 82 COG2225 AceB, Malate synthase Energy production and conversion 146342994 Common - Putative Spermidine/putrescine ABC transpoter (substrate binding protein) BRADO6178 62 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146341675 Common - conserved hypothetical protein, putative membrane protein BRADO4780 34 COG2268 COG2268, Uncharacterized protein conserved in bacteria Function unknown 146340731 Common - conserved hypothetical protein; putative signal peptide BRADO3784 10 None None None 146339909 Common - conserved hypothetical protein; putative DSBA oxidoreductase BRADO2913 46 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 146341493 Common - Putative carbon monoxide dehydrogenase medium subunit, coxM-like protein BRADO4586 102 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146343182 Common - Hypothetical protein; putative FtsK/SpoIIIE family protein BRADO6383 8 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 146342426 Common - hypothetical protein BRADO5585 15 None None None 146343237 Common - Conserved hypothetical protein; Putative kinase BRADO6456 15 COG0645 COG0645, Predicted kinase General function prediction only 146341582 Common - conserved hypothetical protein; putative Rhodanese family protein BRADO4683 88 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146337771 Nonpathogen - hypothetical protein BRADO0648 1 None None None 146338575 Common ctrA Two-component cell cycle transcriptional regulator ctrA BRADO1497 214 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146339472 Common - Adenine deaminase BRADO2460 69 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 146340991 Common xthA2 exodeoxyribonuclease III BRADO4062 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 146342397 Nonpathogen - hypothetical protein BRADO5554 1 None None None 146342872 Common - conserved hypothetical protein possibly involved in catabolism of external DNA (COG2961 domain) BRADO6052 84 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 146337478 Common pncB nicotinate phosphoribosyltransferase BRADO0323 61 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 146341535 Common - putative esterase/lipase BRADO4633 74 COG0657 Aes, Esterase/lipase Lipid metabolism 146338430 Common - putative amino acid efflux protein, LysE family BRADO1345 117 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 146340110 Common - putative Formyl-CoA transferase BRADO3125 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146341646 Nonpathogen - hypothetical protein; putative membrane protein BRADO4750 4 None None None 146338000 Common - Putative dipeptide ABC transporter (permease protein) BRADO0893 210 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146339171 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2130 1 None None None 146340255 Common - Putative Short-chain dehydrogenase/reductase SDR BRADO3276 225 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146338042 Common - putative acyl-CoA dehydrogenase BRADO0935 151 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146343066 Common dcp peptidyl-dipeptidase BRADO6258 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 146341154 Common - hypothetical protein BRADO4226 14 None None None 146339977 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2982 9 COG3904 COG3904, Predicted periplasmic protein Function unknown 146337633 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO0498 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146339556 Common - putative ABC transporter ATP-binding protein BRADO2547 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146343343 Common minD Septum site-determining protein minD (Cell division inhibitor minD) BRADO6569 136 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 146341929 Common - putative flagellar hook-associated protein 1 (HAP1, FlgK protein) BRADO5064 124 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 146339086 Nonpathogen - hypothetical protein BRADO2040 1 None None None 146343787 Common - Putative HlyD family secretion protein BRADO7035 121 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146338560 Common - putative signal transduction histidine kinase with PAS/PAC domains BRADO1480 79 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146343254 Common - Putative phosphodiesterase (yfcE) BRADO6474 63 COG0622 COG0622, Predicted phosphoesterase General function prediction only 146340663 Common - hypothetical protein BRADO3711 14 COG4976 COG4976, Predicted methyltransferase (contains TPR repeat) General function prediction only 146340676 Common - hypothetical protein BRADO3727 46 COG5267 COG5267, Uncharacterized protein conserved in bacteria Function unknown 146343577 Common - putative transposase BRADO6815 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146341444 Common - conserved hypothetical protein; putative permease BRADO4535 11 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 146342024 Common - putative membrane bound O-acyl transferase (MBOAT) family protein; putative Alginate O-acetyltransferase BRADO5161 86 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 146337245 Common - conserved hypothetical protein; putative ATPase; putative ParA family partition protein BRADO0071 66 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146343670 Common metA homoserine O-succinyltransferase BRADO6913 62 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 146338405 Common - putative transcriptional regulatory protein, LysR family BRADO1320 189 COG0583 LysR, Transcriptional regulator Transcription 146340923 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3994 1 None None None 146340968 Common - putative peptidoglycan-binding LysM:Peptidase M23/M37 family (NlpD/LppB-like) BRADO4039 191 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 146343584 Common - putative dipeptide/oligopeptide/nickel ABC transporter, permease protein BRADO6822 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146339850 Common livH high-affinity branched-chain amino acid ABC transporter (permease protein) BRADO2852 151 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146341719 Common - putative UDP-glucose 4-epimerase (NAD-dependent epimerase/dehydratase) BRADO4824 180 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146337552 Common kgd alpha-ketoglutarate decarboxylase BRADO0406 148 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 146339545 Common - allantoate amidohydrolase BRADO2536 85 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146343770 Nonpathogen - hypothetical protein; putative signal peptide BRADO7017 1 None None None 146343542 Common argF ornithine carbamoyltransferase BRADO6778 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 146337446 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0286 3 None None None 146337402 Common - putative ABC transporter (fused ATP-binding and permease components) BRADO0237 249 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 146338647 Common - putative oligopeptide ABC transporter (permease protein) BRADO1578 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146343474 Nonpathogen coxF conserved protein CoxF BRADO6704 1 None None None 146337601 Common - putative phage related integrase BRADO0462 60 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146337317 Common - CysZ-like protein BRADO0148 30 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 146339245 Common - putative phosphatase; putative signal peptide BRADO2211 51 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 146340141 Common - hypothetical protein BRADO3156 76 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 146337415 Common - hypothetical protein BRADO0253 38 COG3339 COG3339, Uncharacterized conserved protein Function unknown 146337778 Common - hypothetical protein BRADO0656 46 COG2261 COG2261, Predicted membrane protein Function unknown 146342777 Common - conserved hypothetical protein; putative amidohydrolase (metal-dependent) BRADO5952 49 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146343594 Common - two-component system regulator: response regulator receiver (N-terminal) and histidine kinase (C-terminal) BRADO6832 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 146340793 Common - hypothetical protein BRADO3852 6 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 146342353 Common - Putative Branched-chain amino acid ABC transporter (ATP binding protein); livF-like protein BRADO5509 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146338011 Common - Putative Oligopeptide ABC transporter (permease protein) BRADO0904 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338061 Common - TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein precursor BRADO0956 85 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146340199 Nonpathogen - hypothetical protein BRADO3216 1 None None None 146343860 Common - Putative transcriptional regulatory protein, luxR family BRADO7110 33 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 146342784 Common aroE Shikimate dehydrogenase BRADO5961 223 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 146340005 Nonpathogen - hypothetical protein BRADO3011 1 None None None 146338296 Common - Possible Na+/? antiporter precursor BRADO1200 36 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 146341008 Common - Putative Exopolysaccharide regulatory protein exoR; putative TPR repeat protein BRADO4079 63 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146343565 Common - Putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO6803 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146342378 Common - hypothetical protein; putative membrane protein BRADO5535 4 None None None 146343547 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6784 3 None None None 146343886 Common - Putative aldehyde dehydrogenase BRADO7137 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146339006 Common - putative NUDIX hydrolase BRADO1955 35 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146342697 Common ureAB bifunctional urease subunit gamma/beta BRADO5864 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 146340355 Common - acetylornithine deacetylase BRADO3383 211 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146342128 Common - conserved hypothetical protein; putative exported protein BRADO5275 72 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146341093 Common - Putative ABC transporter (ATP-binding protein); putative ribose transport system BRADO4164 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146342347 Common - putative ABC transporter (permease protein) BRADO5503 184 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146343421 Common - putative metal ion transporter; putative Mg2+ transporter protein (CorA-like) BRADO6650 138 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 146339512 Common - Putative multidrug efflux transporter (RND family) BRADO2502 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146341070 Nonpathogen - hypothetical protein BRADO4141 1 None None None 146339283 Common - Putative cytochrome c oxidase subunit II BRADO2259 45 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 146339741 Nonpathogen - hypothetical protein; putative phage major coat protein hexon (fragment) BRADO2740 1 None None None 146337608 Nonpathogen - hypothetical protein BRADO0470 1 None None None 146341880 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5012 7 None None None 146339655 Common - hypothetical protein BRADO2648 37 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 146338929 Common - putative Oxydoreductase BRADO1869 80 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 146343634 Common - Putative two component-response regulator receiver (CheY-like protein) BRADO6874 27 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146339940 Common - conserved hypothetical protein; putative anhydrase; putative transferase hexapeptide repeat (LpxA-like enzyme) BRADO2944 207 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 146340123 Common - acyl-CoA dehydrogenase BRADO3138 164 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146338567 Common - Putative ABC transporter (substrate-binding protein) BRADO1488 29 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146339595 Common - amidase BRADO2587 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146340475 Common prfB Peptide chain release factor 2 (RF-2) BRADO3516 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 146343276 Common - Putative sensor histidine kinase with a response regulator receiver domain BRADO6496 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342190 Nonpathogen - hypothetical protein BRADO5341 1 None None None 146337505 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO0356 5 None None None 146337822 Common - Putative ABC transporter, ATP-binding protein BRADO0703 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146342247 Common - conserved hypothetical protein (TPR repeat) BRADO5401 9 None None None 146337427 Common typA GTP-binding protein typA/bipA (Tyrosine phosphorylated protein A) BRADO0265 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 146338889 Common - hypothetical protein with methyl accepting domain BRADO1828 11 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340469 Common - putative aminotransferase BRADO3509 236 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146340136 Common ftsJ Ribosomal RNA large subunit (23S) methyltransferase BRADO3151 139 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 146338200 Common - Putative methyl-accepting chemotaxis receptor/sensory transducer BRADO1098 155 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339060 Common - putative glycosyl transferase, family 2 BRADO2014 13 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146338062 Nonpathogen - Putative TrapT family, dctQ subunit, C4-dicarboxylate transport BRADO0957 2 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 146342739 Common - Putative ABC transporter, permease protein; putative aliphatic sulfonates transporter BRADO5911 190 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146342370 Common dctP TRAP-Type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit) BRADO5527 106 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146340684 Common - putative low-affinity phosphate transport accessory protein BRADO3735 64 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 146339129 Nonpathogen - hypothetical protein BRADO2083 1 None None None 146337740 Common - Conserved hypothetical protein; putative hypothetical 19.0 kDa protein in cobS 5'region (containing a J domain at N-terminal) BRADO0612 45 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146340770 Common - DNA polymerase III subunit delta' BRADO3828 213 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 146342563 Common - hypothetical protein BRADO5726 31 COG4270 COG4270, Predicted membrane protein Function unknown 146338207 Common - putative 50S ribosomal protein L31 BRADO1106 40 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 146341541 Common - hypothetical protein BRADO4639 36 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 146338595 Nonpathogen - hypothetical protein BRADO1522 1 None None None 146339033 Nonpathogen - hypothetical protein BRADO1984 1 None None None 146340215 Common - Putative DEAD-box cold-shock protein, ATP-independent RNA helicase BRADO3233 236 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 146342439 Common aroE shikimate 5-dehydrogenase BRADO5598 208 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 146338607 Common - hypothetical protein BRADO1535 170 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146340911 Common - conserved hypothetical protein; putative peptidase (caspase-like) BRADO3980 17 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339360 Common ligA Protocatechuate 4,5-dioxygenase, alpha chain BRADO2341 14 None None None 146338550 Common - hypothetical protein BRADO1470 19 None None None 146339573 Nonpathogen - hypothetical protein BRADO2564 2 None None None 146343440 Common - conserved hypothetical protein; putative outer-membrane immunogenic protein precursor; putative secreted protein BRADO6669 27 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146340037 Common - putative branched-chain amino acid ABC transporter, substrate-binding protein BRADO3045 81 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343356 Common - putative D-alanyl-D-alanine carboxypeptidase BRADO6583 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 146339013 Common - hypothetical protein BRADO1962 31 None None None 146341899 Common - conserved hypothetical protein; putative signal peptide BRADO5033 28 COG3334 COG3334, Uncharacterized conserved protein Function unknown 146342750 Nonpathogen - hypothetical protein BRADO5922 1 None None None 146340455 Common - conserved hypothetical protein; putative signal peptide BRADO3495 28 COG4765 COG4765, Uncharacterized protein conserved in bacteria Function unknown 146339069 Common ispB octaprenyl diphosphate synthase BRADO2023 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 146340841 Common mdtA Multidrug resistance protein mdtA precursor (Multidrug transporter mdtA) BRADO3904 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146338252 Common - RNA polymerase ECF-type sigma factor BRADO1156 48 COG4941 COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain Transcription 146342705 Common - Putative branched-chain amino acid ABC transporter, permease protein BRADO5872 158 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146343431 Common - putative hydrolase BRADO6660 110 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341888 Common - conserved hypothetical protein; putative signal peptide BRADO5022 21 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 146339276 Common - conserved hypothetical protein; putative signal peptide BRADO2251 36 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146340797 Common ntrX Nitrogen assimilation regulatory protein BRADO3856 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146337385 Common coaA pantothenate kinase BRADO0218 70 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 146339297 Common cbbR RuBisCO operon transcriptional regulator BRADO2273 192 COG0583 LysR, Transcriptional regulator Transcription 146339315 Common - putative transcriptional regulator, Crp/Fnr family BRADO2291 59 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146339212 Nonpathogen - hypothetical protein BRADO2176 1 None None None 146337995 Common - Putative Glyoxylase family protein BRADO0888 22 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146338558 Common kaiC circadian clock protein KaiC BRADO1478 124 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 146338531 Common - hypothetical protein BRADO1450 15 None None None 146340950 Common - hypothetical protein BRADO4021 18 None None None 146340102 Common - putative ATP-dependent protease La BRADO3111 154 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 146339210 Common katN Non-heme manganese-containing catalase BRADO2172 62 COG3546 COG3546, Mn-containing catalase Inorganic ion transport and metabolism 146341602 Common - putative diacylglycerol kinase (DgkA-like) BRADO4703 53 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 146337409 Nonpathogen - hypothetical protein BRADO0245 3 None None None 146341238 Common - acetyl-CoA acetyltransferase BRADO4314 91 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146340311 Common ndk nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) BRADO3334 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 146342845 Common - putative Sensor histidine kinase (HWE family) with a GAF domain BRADO6025 94 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146339645 Common - Putative copper binding protein BRADO2638 34 COG3794 PetE, Plastocyanin Energy production and conversion 146341309 Common - putative phage tail sheath protein BRADO4390 44 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 146339154 Common - putative ABC spermidine/putrescine transporter permease protein BRADO2112 211 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146342759 Nonpathogen - conserved hypothetical protein; putative membrane protein and putative signal peptide BRADO5933 2 None None None 146340159 Nonpathogen - putative thioredoxin; putative SoxS protein BRADO3174 8 None None None 146337368 Common coaE dephospho-CoA kinase BRADO0201 205 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 146342123 Common - putative Phenylacetate-CoA ligase BRADO5269 105 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 146341545 Nonpathogen - hypothetical protein; putative membrane protein, putative permease BRADO4643 2 None None None 146341734 Common - putative capsule polysaccharide export outer membrane protein BRADO4841 69 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 146340624 Common - putative transciptional regulatory Sir2-family protein; putative NAD-dependent protein deacetylase. BRADO3672 151 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 146342802 Common - Conserved hypothetical protein; putative membrane protein, membrane transport protein BRADO5979 111 COG0628 PerM, Predicted permease General function prediction only 146338253 Nonpathogen - hypothetical protein BRADO1157 9 None None None 146341252 Nonpathogen - hypothetical protein BRADO4328 1 None None None 146337819 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO0700 1 None None None 146339219 Common fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase; GDP-4-dehydro-6-L-deoxygalactose reductase BRADO2184 221 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146339622 Common - putative transcriptional regulatory protein, GntR family BRADO2615 45 COG1802 GntR, Transcriptional regulators Transcription 146341012 Common lpD dihydrolipoamide dehydrogenase BRADO4083 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 146340611 Nonpathogen - hypothetical protein BRADO3656 1 None None None 146341461 Common - conserved hypothetical protein; putative ATPase involved in chromosome partitioning BRADO4553 87 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146338361 Common gvpS Gas vesicle synthesis protein GvpS (GvpA-related) BRADO1270 17 None None None 146340837 Common - conserved hypothetical protein; putative outer membrane protein with periplasmic-binding domain (ABC-type) BRADO3900 143 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 146342713 Common soxA sarcosine oxidase, alpha subunit BRADO5880 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 146343534 Common dcd 2'-deoxycytidine 5'-triphosphate deaminase BRADO6769 33 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 146337371 Common - hypothetical protein BRADO0204 49 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 146338337 Nonpathogen - hypothetical protein BRADO1245 2 None None None 146339280 Common - Putative cytochrome c BRADO2256 56 COG2863 COG2863, Cytochrome c553 Energy production and conversion 146341117 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4188 3 None None None 146341088 Common - conserved hypothetical protein; putative signal peptide; putative DJ-1/PfpI family protein BRADO4159 86 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146339826 Common - putative cytochrome b561 family protein BRADO2827 84 COG3038 CybB, Cytochrome B561 Energy production and conversion 146342547 Common thiO thiamine biosynthesis oxidoreductase thiO BRADO5709 75 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146342197 Common phnN putative ATP-binding component, PhnN protein BRADO5349 59 COG3709 COG3709, Uncharacterized component of phosphonate metabolism Inorganic ion transport and metabolism 146341748 Nonpathogen - hypothetical protein BRADO4864 2 None None None 146341158 Common - putative glycosyl transferase, group 1 BRADO4230 190 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146339951 Nonpathogen - hypothetical protein BRADO2955 1 None None None 146342394 Common - putative glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein) BRADO5551 136 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 146338382 Common - putative general secretion pathway protein F BRADO1294 135 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 146337971 Common - Putative phospholipase/carboxylesterase family protein BRADO0863 32 COG0400 COG0400, Predicted esterase General function prediction only 146338172 Common sbp sulfate transport protein (ABC superfamily, peri_bind) BRADO1070 89 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 146337999 Common - Putative dipeptide ABC transporter (permease protein) BRADO0892 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146341972 Common - putative transcriptional regulatory protein, arsR family; arsR1 BRADO5108 66 COG4189 COG4189, Predicted transcriptional regulator Transcription 146338657 Common - Putative oligopeptide ABC transporter (ATP binding protein) BRADO1588 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146341766 Nonpathogen - hypothetical protein BRADO4883 1 None None None 146341892 Common fliQ flagellar biosynthesis protein FliQ BRADO5026 32 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 146341231 Nonpathogen - hypothetical protein BRADO4307 1 None None None 146337956 Common - Conserved hypothetical protein; putative radical SAM domain BRADO0847 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 146338365 Common - putative Vesicle-fusing ATPase BRADO1274 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 146341981 Common - putative Permease of the major facilitator superfamily BRADO5117 87 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146338262 Common - conserved hypothetical protein with DGPF domain (modular protein) BRADO1166 45 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 146339053 Nonpathogen - putative heme oxygenase BRADO2007 4 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 146343372 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6600 2 None None None 146343868 Common - putative outer membrane protein precursor BRADO7119 21 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146337867 Common polA DNA polymerase I BRADO0752 217 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 146343707 Common otsB Trehalose-phosphatase (Trehalose 6-phosphate phosphatase) (TPP) BRADO6953 80 COG1877 OtsB, Trehalose-6-phosphatase Carbohydrate transport and metabolism 146342650 Common glgB glycogen branching enzyme BRADO5817 145 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 146340019 Common - putative 1,4-alpha-glucan branching enzyme BRADO3025 149 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 146341092 Common - Putative ABC transporter (substrate-binding protein); putative ribose transport system BRADO4163 100 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146342591 Common plcN Non-hemolytic phospholipase C precursor (PLC-N) (Phosphatidylcholine cholinephosphohydrolase) (Phosphatidylcholine-hydrolyzing phospholipase C) (PC-PLC) BRADO5754 35 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 146343410 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase BRADO6639 217 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 146342959 Common wrbA TrpR binding protein WrbA BRADO6142 115 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 146337450 Nonpathogen - hypothetical protein; putative signal peptide BRADO0290 1 None None None 146337839 Common - Putative mechanosensitive ion channel protein (small-conductance (MscS) family) BRADO0720 221 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 146340943 Common - putative transporter (YecA family protein with SEC-C motif)) BRADO4014 58 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 146342260 Common - conserved hypothetical protein (NifZ domain) BRADO5414 8 None None None 146340744 Common - hypothetical protein BRADO3799 68 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 146337766 Common - Conserved hypothetical protein; putative Zn-dependent protease BRADO0643 121 COG4784 COG4784, Putative Zn-dependent protease General function prediction only 146341814 Common - putative glutathione S-transferase BRADO4939 95 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146341997 Common thiD bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase); hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) BRADO5133 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 146338457 Nonpathogen - hypothetical protein BRADO1373 5 None None None 146338779 Common - putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like) BRADO1713 98 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146342543 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO5705 3 COG1873 COG1873, Uncharacterized conserved protein Function unknown 146339564 Common - putative methyl-accepting chemotaxis receptor/sensory transducer precursor (chemoreceptor) BRADO2555 153 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146343605 Common - Putative permease of the Major Facilitator Superfamily (MFS) family BRADO6843 55 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343124 Common - hypothetical protein BRADO6322 47 COG2343 COG2343, Uncharacterized protein conserved in bacteria Function unknown 146340132 Common - hypothetical protein BRADO3147 97 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 146340014 Common - putative ABC transporter permease protein; putative oligopeptide/dipeptide transport protein BRADO3020 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146337514 Common leuD isopropylmalate isomerase small subunit BRADO0365 212 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 146343610 Common - Conserved hypothetical protein; possible sulfur oxidation protein precursor soxZ BRADO6848 37 None None None 146342657 Common - conserved hypothetical protein; putative Ku protein BRADO5824 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 146340184 Common - putative cation/multidrug efflux pump of the AcrB/AcrD/AcrF family BRADO3200 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146340434 Nonpathogen - hypothetical protein BRADO3474 1 None None None 146337179 Common gyrB DNA gyrase subunit B BRADO0004 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 146337328 Common - conserved hypothetical protein; putative Dimeric alpha-beta barrel domain BRADO0159 42 COG5470 COG5470, Uncharacterized conserved protein Function unknown 146340408 Common - hypothetical protein BRADO3441 26 COG4244 COG4244, Predicted membrane protein Function unknown 146340154 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein BRADO3169 240 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 146337728 Common - Putative diguanylate cyclase signaling protein (with GGDEF, EAL and MHYT domains) BRADO0600 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146342557 Nonpathogen - hypothetical protein BRADO5720 5 None None None 146342482 Common - Putative phytoene dehydrogenase family protein BRADO5642 87 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 146338687 Nonpathogen bchY bacteriochlorophyllide reductase subunit 52.5 kDa chain BRADO1619 17 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146343403 Common - hypothetical protein BRADO6632 14 None None None 146343479 Common - putative acetyltransferase BRADO6711 7 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146339902 Common - hypothetical protein BRADO2904 82 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 146343723 Common - putative transcriptional regulator, MarR family. BRADO6970 64 COG1846 MarR, Transcriptional regulators Transcription 146341794 Common cobQ cobyric acid synthase BRADO4913 151 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 146342723 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5892 3 None None None 146343874 Common - conserved hypothetical protein; putative transcriptional regulatory protein, ArsR family BRADO7125 27 COG1414 IclR, Transcriptional regulator Transcription 146342610 Common - putative periplasmic-binding protein; putative amino-acid periplasmic-binding protein BRADO5774 26 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146340982 Common - putative dGTP triphosphohydrolase BRADO4053 169 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 146341917 Nonpathogen - hypothetical protein BRADO5052 5 None None None 146338833 Common - putative Peptidase M20D, amidohydrolase; putative Aminobenzoyl-glutamate utilization protein BRADO1770 75 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 146337872 Common - putative Phosphomannomutase/phosphoglucomutase (PMM / PGM) BRADO0757 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 146341649 Common exoA succinoglycan biosynthesis protein ExoA BRADO4753 83 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146339456 Common fixG Nitrogen fixation protein fixG; 4Fe-4S ferredoxin, iron-sulfur binding domain BRADO2442 78 COG0348 NapH, Polyferredoxin Energy production and conversion 146341863 Common - conserved hypothetical protein; putative signal peptide; putative caspase domain (p20 subunit) BRADO4995 26 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146341933 Common - conserved hypothetical protein; putative Phosphoglycerate mutase family protein BRADO5068 70 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 146342615 Common - putative permease of major facilitator superfamily (MFS) (COG0477) BRADO5779 17 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146339499 Common - putative UDP-glucose 4-epimerase BRADO2488 107 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146342831 Common - hypothetical protein BRADO6010 43 COG2030 MaoC, Acyl dehydratase Lipid metabolism 146339635 Common - Putative phytoene synthase BRADO2628 105 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 146338130 Common - hypothetical protein BRADO1027 16 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146340875 Nonpathogen - hypothetical protein BRADO3941 1 None None None 146338671 Common hutI Imidazolonepropionase (Imidazolone-5-propionate hydrolase) BRADO1603 99 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 146338750 Common hupS Uptake hydrogenase small subunit precursor (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) BRADO1684 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 146338425 Common - conserved hypothetical protein; putative membrane protein; putative permeases of the major facilitator superfamily BRADO1340 37 COG5473 COG5473, Predicted integral membrane protein Function unknown 146339369 Common - putative cytochrome P450 BRADO2350 74 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146337545 Common - putative ABC transporter, ATP-binding protein BRADO0399 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 146338865 Common idnD L-idonate 5-dehydrogenase, NAD-binding BRADO1804 206 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 146342952 Nonpathogen - hypothetical protein BRADO6135 1 None None None 146339230 Common - Putative general secretion pathway protein K BRADO2196 10 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 146339274 Common - hypothetical protein BRADO2249 159 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146340180 Common - putative enzyme with metallo-hydrolase/oxidoreductase domain (ycbL-like) BRADO3196 195 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146340402 Common - putative transcriptional regulatory protein, Crp/Fnr family. BRADO3435 70 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146342384 Common - Putative Drug resistance transporter, Bcr/CflA family BRADO5541 202 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146337814 Common - putative glutamate synthase domain 2 BRADO0693 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 146339326 Nonpathogen - hypothetical protein BRADO2305 1 None None None 146337277 Common - Putative sugar ABC transporter (substrate binding protein); putative glycerol 3-phosphate transport protein, ugpB-like protein BRADO0104 97 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146341938 Nonpathogen - hypothetical protein BRADO5073 3 None None None 146341757 Common - conserved hypothetical protein; putative alpha/beta hydrolase fold-containing protein BRADO4874 153 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146340594 Nonpathogen - hypothetical protein BRADO3639 1 None None None 146337649 Common regR two-component transcriptional regulator RegR, Fis family BRADO0515 206 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 146341282 Common ssuD putative sulfonate monooxygenase (SsuD/MsuD-like) BRADO4361 81 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146337952 Nonpathogen - hypothetical protein BRADO0843 2 None None None 146338468 Common aroQ2 3-dehydroquinate dehydratase BRADO1385 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 146338631 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1559 1 None None None 146343318 Common - conserved hypothetical protein; putative signal peptide BRADO6543 9 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 146340907 Nonpathogen - hypothetical protein BRADO3976 4 None None None 146338145 Common - hypothetical protein BRADO1042 48 COG1359 COG1359, Uncharacterized conserved protein Function unknown 146339133 Common - putative sensor histidine kinase with a Response regulator receiver domain BRADO2087 203 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146343679 Common - putative monooxygenase, FAD binding (hydroxylase) BRADO6922 85 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146341764 Common - putative flagellar hook-associated protein 1 (HAP1, FlgK protein) BRADO4881 100 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 146337489 Common - putative beta-lactamase BRADO0335 68 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146343208 Common - putative recombinase BRADO6418 81 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 146340635 Common - putative TRAP-type C4-dicarboxylate transport system, DctQ subunit; putative membrane protein. BRADO3683 23 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 146343194 Nonpathogen - hypothetical protein BRADO6399 1 None None None 146337797 Common - Putative methyl-accepting chemotaxis protein (with a HAMP region) BRADO0676 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146342036 Common - putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO5174 47 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146338806 Common dppD Dipeptide transport ATP-binding protein dppD (ABC transporter) BRADO1740 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146337626 Common - conserved hypothetical protein (fragment) BRADO0491 15 COG2135 COG2135, Uncharacterized conserved protein Function unknown 146341255 Common - putative propionyl-CoA carboxylase beta chain BRADO4331 211 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 146340388 Common - acetylornithine deacetylase BRADO3421 203 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146340555 Nonpathogen - hypothetical protein BRADO3599 2 None None None 146340177 Common - putative disulfide bond formation protein D precursor (Disulfide oxidoreductase D) BRADO3193 84 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 146343555 Common aroK anaerobic benzoate catabolism transcriptional regulator BRADO6792 193 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 146338082 Common livF high-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) BRADO0978 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343146 Nonpathogen - putative General secretion pathway protein I, GspI BRADO6344 3 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 146337202 Common gabD Succinate-semialdehyde dehydrogenase [NADP+] (SSDH) BRADO0028 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146337997 Common - Putative dipeptide ABC transporter (ATP-binding protein) BRADO0890 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146339530 Common paaB Phenylacetic acid degradation protein paaB BRADO2520 37 COG3460 COG3460, Uncharacterized enzyme of phenylacetate metabolism Secondary metabolites biosynthesis, transport, and catabolism 146339562 Common - hypothetical protein BRADO2553 60 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 146338210 Common - Putative acetyltransferase BRADO1109 35 COG0456 RimI, Acetyltransferases General function prediction only 146343245 Nonpathogen - hypothetical protein BRADO6465 7 COG4093 COG4093, Uncharacterized protein conserved in bacteria Function unknown 146337382 Common hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase BRADO0215 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 146339927 Common - hypothetical protein; putative signal peptide BRADO2931 5 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 146340584 Common - hypothetical protein; putative phage major capsid protein domain. BRADO3629 10 COG4653 COG4653, Predicted phage phi-C31 gp36 major capsid-like protein General function prediction only 146338215 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO1114 165 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146343800 Common - hypothetical protein, putative S-adenosyl-L-methionine (SAM)-methyltransferase BRADO7049 10 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146340932 Common - putative outer-membrane protein; putative secreted protein BRADO4003 20 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146340626 Nonpathogen - hypothetical protein BRADO3674 5 None None None 146341315 Common - putative transcriptional regulatory protein, LacI family BRADO4397 124 COG1609 PurR, Transcriptional regulators Transcription 146338087 Common pimB Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase) BRADO0983 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146340746 Common - conserved hypothetical protein; putative signal peptide BRADO3801 21 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 146342278 Common fdxB Ferredoxin-3 (Ferredoxin III) (FdIII) BRADO5432 34 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 146338817 Common - hypothetical protein BRADO1751 12 COG2155 COG2155, Uncharacterized conserved protein Function unknown 146343416 Common - hypothetical protein BRADO6645 25 COG2128 COG2128, Uncharacterized conserved protein Function unknown 146338232 Common - conserved hypothetical protein; putative TRAP-type uncharacterized transport system protein, periplasmic component BRADO1132 8 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146340119 Common atoB acetyl-CoA acetyltransferase with thiolase domain BRADO3134 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146342881 Common - beta alanine--pyruvate transaminase BRADO6061 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 146339991 Nonpathogen - hypothetical protein; putative signal peptide BRADO2996 1 None None None 146341268 Common - hypothetical protein BRADO4345 15 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 146343807 Common - putative exopolysaccharide biosynthesis protein BRADO7056 151 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 146343661 Common mtnA methylthioribose-1-phosphate isomerase BRADO6903 130 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 146338264 Common - putative transcriptional regulator, TetR family BRADO1168 58 COG1309 AcrR, Transcriptional regulator Transcription 146339523 Nonpathogen - hypothetical protein BRADO2513 11 None None None 146340134 Common - putative carbon-monoxide dehydrogenase large subunit BRADO3149 108 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146340716 Nonpathogen - hypothetical protein BRADO3768 12 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146343619 Common - conserved hypothetical protein; putative substrate-binding protein of an ABC transporter BRADO6858 84 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146342066 Common lpcC lipopolysaccharide core biosynthesis mannosyltransferase BRADO5206 125 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146342888 Common lspA Lipoprotein signal peptidase (Prolipoprotein signal peptidase) (SPase II) (Signal peptidase II) BRADO6068 47 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146339196 Common - hypothetical protein BRADO2156 17 None None None 146339868 Common - putative ABC transporter (ATP-binding protein) BRADO2870 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146342933 Common groES co-chaperonin GroES BRADO6114 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 146338624 Common - Oxidoreductase; (flavoprotein subunit; FAD-binding domain). BRADO1552 86 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146339469 Common - putative NAD-dependent alcohol dehydrogenase BRADO2457 193 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 146340592 Nonpathogen - hypothetical protein BRADO3637 1 None None None 146342095 Common ahcY S-adenosyl-L-homocysteine hydrolase BRADO5238 178 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 146343365 Common - Putative Propionate--CoA ligase (Propionyl-CoA synthetase) BRADO6593 215 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146343725 Common - putative AsmA-like protein BRADO6972 61 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 146343114 Common - hypothetical protein BRADO6311 18 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 146342602 Nonpathogen - hypothetical protein BRADO5765 2 None None None 146337323 Common - putative methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase); putative ADA regulatory protein BRADO0154 205 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 146339144 Common - putative 3-oxacyl-ACP reductase BRADO2099 236 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146338920 Nonpathogen - hypothetical protein; putative signal peptide BRADO1860 2 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 146341558 Common - Putative component of multidrug efflux pump, mdtA-Like BRADO4656 156 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146339540 Common kgtP alpha-ketoglutarate permease (MFS family) BRADO2531 128 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343719 Common hmgA homogentisate 1,2-dioxygenase BRADO6966 53 COG3508 HmgA, Homogentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146341288 Nonpathogen - hypothetical protein BRADO4369 1 None None None 146338074 Common - ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter); putative branched-chain amino acid transport protein BRADO0970 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337338 Common - hypothetical protein; putative membrane protein BRADO0170 3 None None None 146342971 Nonpathogen - hypothetical protein; putative membrane protein BRADO6154 1 None None None 146341443 Common - hypothetical protein BRADO4534 7 None None None 146338103 Common pheA prephenate dehydratase BRADO0999 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 146338684 Common crtF demethylspheroidene and didehydrorhodopin O-methyltransferase BRADO1616 31 COG2519 GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases Translation, ribosomal structure and biogenesis 146337233 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0059 1 None None None 146338593 Common - Putative Multicopper oxidase; putative Copper resistance protein A BRADO1520 128 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 146342978 Common - Putative Transcriptional regulatory protein, AraC family BRADO6161 36 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146339679 Common - conserved hypothetical protein; Putative Pectin lyase fold BRADO2674 11 COG3420 NosD, Nitrous oxidase accessory protein Inorganic ion transport and metabolism 146341061 Common - conserved hypothetical protein; putative signal peptide; putative Surface antigen domains BRADO4132 161 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 146341915 Common flgI flagellar basal body P-ring protein BRADO5050 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 146340480 Common - conserved hypothetical protein; putative C-terminal Lysin domain BRADO3522 34 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 146338765 Common hypD hydrogenase expression/formation protein BRADO1699 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 146339685 Nonpathogen - hypothetical protein BRADO2680 1 None None None 146338091 Common glpK glycerol kinase BRADO0987 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 146339718 Common - conserved hypothetical protein; putative signal peptide BRADO2716 15 COG5436 COG5436, Predicted integral membrane protein Function unknown 146339998 Nonpathogen - hypothetical protein BRADO3003 1 None None None 146338071 Common - Putative ABC transporter, substrate-binding protein; putative branched-chain amino acid transport protein BRADO0967 85 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338983 Common - putative ribose ABC transporter, permease BRADO1930 150 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146341960 Common glgX glycosyl hydrolase (glycogen debranching enzyme) BRADO5096 147 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 146338819 Common dgoK 2-dehydro-3-deoxygalactonokinase (2-keto-3-deoxy-galactonokinase) (2-oxo-3-deoxygalactonate kinase) BRADO1753 40 COG3734 DgoK, 2-keto-3-deoxy-galactonokinase Carbohydrate transport and metabolism 146341049 Common lexA LexA repressor BRADO4120 167 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 146340760 Nonpathogen - ABC transporter substrate-binding protein, periplasmic component BRADO3817 17 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146343636 Common - Putative carboxylase; putative substrate: acetyl-CoA, propionyl-CoA, methylcrotonoyl-CoA BRADO6876 150 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 146339861 Common - Conserved Hypothetical protein; putative molybdopterin binding protein with a nucleotide-diphospho-sugar transferase domain BRADO2863 116 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 146339803 Common - hypothetical protein BRADO2804 17 COG3832 COG3832, Uncharacterized conserved protein Function unknown 146338379 Common - Putative general secretion pathway protein D BRADO1291 140 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 146343228 Common - putative metalloendopeptidase BRADO6447 187 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 146343480 Common tldD putative peptidase TldD BRADO6712 169 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 146338788 Common cyoD cytochrome o ubiquinol oxidase, subunit IV (Ubiquinol oxidase chain D) BRADO1722 61 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 146340338 Nonpathogen - hypothetical protein BRADO3365 1 None None None 146341669 Common - putative oxidoreductase subunit; putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs BRADO4774 105 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146342108 Common - conserved hypothetical protein; putative membrane protein; putative branched-chain amino acid ABC transport system permease protein BRADO5252 146 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146338345 Nonpathogen - hypothetical protein BRADO1253 1 None None None 146341379 Common acpS 4'-phosphopantetheinyl transferase BRADO4466 135 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 146340580 Nonpathogen - hypothetical protein BRADO3625 3 None None None 146339710 Common - Putative sensor histidine kinase with a PAS domain BRADO2708 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146343334 Nonpathogen - Conserved hypothetical protein; putative signal peptide BRADO6560 3 None None None 146341484 Common eutB Ethanolamine ammonia-lyase heavy chain (Ethanolamine ammonia-lyase large subunit) BRADO4577 55 COG4303 EutB, Ethanolamine ammonia-lyase, large subunit Amino acid transport and metabolism 146342836 Nonpathogen - conserved hypothetical protein; putative NTF2-like protein BRADO6015 2 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 146338706 Common bchN light-independent protochlorophyllide reductase subunit N BRADO1639 28 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146343791 Common - hypothetical protein; putative Hemolysin-type calcium-binding repeats BRADO7039 69 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 146342965 Common gltI glutamate/aspartate ABC transporter (substrate binding protein) BRADO6148 146 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146341431 Common - hypothetical protein BRADO4522 22 None None None 146341683 Common - putative sugar ABC transporter, substrate binding protein; putative ribose ABC transporter BRADO4788 76 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146341859 Common - hypothetical protein BRADO4991 9 None None None 146338829 Common modC molybdenum ABC transporter (ATP-binding protein) BRADO1765 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 146340886 Nonpathogen - hypothetical protein BRADO3952 2 None None None 146343190 Common - hypothetical protein BRADO6394 107 COG3177 COG3177, Uncharacterized conserved protein Function unknown 146337294 Common - conserved hypothetical protein; putative transporter (Bacterial extracellular solute-binding protein, family 3) BRADO0121 36 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146339597 Common - hypothetical protein BRADO2589 24 COG3826 COG3826, Uncharacterized protein conserved in bacteria Function unknown 146343289 Common - putative signaling membrane protein containing multidomains (diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)) BRADO6510 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146337219 Common lnt apolipoprotein N-acyltransferase BRADO0045 164 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 146337271 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase BRADO0098 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 146342768 Common - conserved hypothetical protein; putative signal peptide BRADO5942 29 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 146337892 Nonpathogen - conserved hypothetical protein; Putative peptidoglycan-binding domain-containing protein BRADO0777 10 COG5480 COG5480, Predicted integral membrane protein Function unknown 146343551 Common boxB Benzoyl-CoA oxygenase (BoxB) BRADO6788 16 COG3396 COG3396, Uncharacterized conserved protein Function unknown 146343798 Common - GDP-mannose 6-dehydrogenase (GMD) BRADO7047 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 146341727 Common - putative sugar nucleotide epimerase/dehydratase BRADO4832 188 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146341776 Common - conserved hypothetical protein; putative Methionyl-tRNA formyltransferase BRADO4895 10 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 146340284 Common - hypothetical protein; putative membrane protein BRADO3307 12 None None None 146341196 Common ssuC putative sulfonate ABC transporter, permease protein BRADO4270 183 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146342627 Nonpathogen - hypothetical protein BRADO5792 4 None None None 146340125 Common - putative 3-hydroxyisobutyrate dehydrogenase BRADO3140 173 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146343321 Common - putative disulfide bond formation protein B (Disulfide oxidoreductase) (dsbB) BRADO6546 31 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 146343383 Common glgA glycogen synthase BRADO6612 125 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 146341849 Common fdsD putative formate dehydrogenase delta subunit BRADO4979 25 None None None 146340265 Common - putative alpha/beta hydrolase family protein BRADO3286 34 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341361 Common - conserved hypothetical protein; putative thiosulfate sulfurtransferase (ChrB/GlpE-like) BRADO4445 36 COG4275 COG4275, Uncharacterized conserved protein Function unknown 146339300 Nonpathogen - putative carboxysome structural peptide CsoS2 BRADO2276 8 None None None 146341456 Nonpathogen - hypothetical protein BRADO4548 14 COG5490 COG5490, Uncharacterized conserved protein Function unknown 146340194 Common - hypothetical protein BRADO3211 3 None None None 146339624 Common - Putative ABC transporter substrate-binding protein BRADO2617 195 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146343049 Common gltD glutamate synthase subunit beta BRADO6240 188 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 146340777 Common - putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like) BRADO3835 97 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146342362 Common - conserved hypothetical protein; putative ferritin-like domain; yciE-like protein BRADO5518 20 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 146340343 Common - putative polysaccharide deacetylase; putative Chitin deacetylase BRADO3370 88 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146337307 Common rplT 50S ribosomal protein L20 BRADO0138 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 146338352 Common - putative transcriptional regulatory protein, LuxR family BRADO1260 27 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146342432 Common - putative Carboxylesterase, type B BRADO5591 54 COG2272 PnbA, Carboxylesterase type B Lipid metabolism 146339812 Nonpathogen - hypothetical protein BRADO2813 2 None None None 146341528 Common - conserved hypothetical protein; putative alpha/beta-Hydrolases superfamily protein BRADO4625 30 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146343626 Common - conserved hypothetical protein; putative permease protein of an ABC transporter BRADO6865 52 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 146342379 Nonpathogen - hypothetical protein BRADO5536 1 None None None 146337492 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase BRADO0338 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 146340873 Nonpathogen - hypothetical protein BRADO3939 1 None None None 146341626 Common - putative two-component response regulator (QseB/CopT-like) BRADO4729 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146338127 Common - hypothetical protein BRADO1024 77 COG3000 ERG3, Sterol desaturase Lipid metabolism 146338616 Common - Amidohydrolase family enzyme, putative Imidazolonepropionase BRADO1544 39 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 146339336 Common - putative O-succinylbenzoate-CoA ligase BRADO2317 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146341841 Common - hypothetical protein BRADO4970 10 None None None 146341861 Common - putative thioesterase superfamily protein BRADO4993 29 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146343179 Nonpathogen - hypothetical protein BRADO6380 1 None None None 146338528 Common ivd2 isovaleryl-CoA dehydrogenase BRADO1447 170 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146343487 Common - putative transcriptional regulator, MarR family BRADO6719 54 COG1846 MarR, Transcriptional regulators Transcription 146341037 Common - Putative Peptidylprolyl isomerase BRADO4108 134 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 146341872 Common - Conserved hypothetical protein; putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO5004 35 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146342014 Common - putative O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein BRADO5151 117 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 146342340 Common - Putative heme-binding protein, SOUL family BRADO5496 26 None None None 146341604 Nonpathogen - conserved hypothetical protein; putative membrane protein (permease) BRADO4705 7 COG0730 COG0730, Predicted permeases General function prediction only 146341055 Common gltA type II citrate synthase BRADO4126 193 COG0372 GltA, Citrate synthase Energy production and conversion 146337358 Common holA DNA polymerase III subunit delta BRADO0191 54 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 146342090 Nonpathogen - hypothetical protein BRADO5233 3 None None None 146340752 Common - conserved hypothetical protein; putative yohL-like protein BRADO3809 79 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 146340781 Common - Putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein BRADO3839 108 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146339894 Common - hypothetical protein BRADO2896 8 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146342159 Common - conserved hypothetical protein; Nucleotide-binding BRADO5309 58 COG2187 COG2187, Uncharacterized protein conserved in bacteria Function unknown 146340241 Common - Putative Phage Integrase/recombinase BRADO3261 12 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146337737 Common - bifunctional: shikimate kinase (N-terminal); dehydroquinate synthase (C-terminal) BRADO0609 214 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 146338416 Common - conserved hypothetical protein; putative membrane protein; putative Permeases of the major facilitator superfamily BRADO1331 61 COG2391 COG2391, Predicted transporter component General function prediction only 146337830 Common - hypothetical protein; putative signal peptide BRADO0711 2 None None None 146342944 Nonpathogen - hypothetical protein BRADO6126 1 COG3514 COG3514, Uncharacterized protein conserved in bacteria Function unknown 146343688 Nonpathogen - hypothetical protein BRADO6931 1 None None None 146337738 Common - Putative HlyC/CorC family of transporters with 2 CBS domains BRADO0610 217 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 146339102 Common - putative acetyltransferase BRADO2056 51 COG0456 RimI, Acetyltransferases General function prediction only 146337843 Nonpathogen - conserved hypothetical protein; putative exported protein. BRADO0724 7 None None None 146338745 Common phoB response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) BRADO1679 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146340895 Common - putative FAD dependent oxidoreductase BRADO3961 125 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146340413 Common - conserved hypothetical protein; putative signal peptide BRADO3449 6 COG3249 COG3249, Uncharacterized protein conserved in bacteria Function unknown 146339872 Common - conserved hypothetical protein (DUF1130) BRADO2874 48 COG5483 COG5483, Uncharacterized conserved protein Function unknown 146341714 Common - hypothetical protein BRADO4819 13 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 146341804 Common - putative Sulfopyruvate decarboxylase (alpha subunit) BRADO4924 27 COG4032 COG4032, Predicted thiamine-pyrophosphate-binding protein General function prediction only 146341852 Common gcvT glycine cleavage system T-protein (aminomethyltransferase) BRADO4982 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 146343094 Common - Putative Cation-transporting ATPase BRADO6289 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 146340055 Common tufB elongation factor Tu BRADO3064 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 146339345 Common - putative transcriptional regulatory protein, MarR family BRADO2326 76 COG1846 MarR, Transcriptional regulators Transcription 146340144 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3159 2 None None None 146339125 Common - putative Transcriptional regulator, Crp/Fnr family BRADO2079 18 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146338812 Common - Putative ABC transporter (permease protein) BRADO1746 105 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 146342925 Common hisZ ATP phosphoribosyltransferase regulatory subunit BRADO6106 111 COG3705 HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis Amino acid transport and metabolism 146341970 Common - putative arsenate reductase; arsC-like protein BRADO5106 121 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 146338749 Common hupV uptake hydrogenase accessory protein HupV BRADO1683 91 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 146342966 Common - hypothetical protein BRADO6149 113 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146339728 Common - conserved hypothetical protein; putative Ku family protein BRADO2726 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 146342144 Common - Putative dimethyl sulfoxide reductase(DMSO reductase) BRADO5292 180 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 146342164 Nonpathogen - hypothetical protein BRADO5314 1 None None None 146340277 Nonpathogen - hypothetical protein BRADO3299 1 None None None 146338810 Common - putative ABC transporter (substrate-binding protein) BRADO1744 97 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 146340485 Nonpathogen - hypothetical protein BRADO3527 1 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337390 Common - conserved hypothetical protein; putative signal peptide BRADO0223 39 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 146340257 Nonpathogen - hypothetical protein; putative membrane protein BRADO3278 1 None None None 146339879 Common - hypothetical protein BRADO2881 11 None None None 146343579 Common - hypothetical protein BRADO6817 23 None None None 146343749 Common - Sensor histidine kinase with HAMP, PAS and Response regulator receiver domains BRADO6996 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146340248 Common - hypothetical protein BRADO3269 6 COG5562 COG5562, Phage envelope protein General function prediction only 146340276 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3297 1 None None None 146339313 Nonpathogen - hypothetical protein BRADO2289 1 None None None 146342020 Common - putative Acyltransferase, group 3; Putative O-antigen acetylase BRADO5157 102 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146342317 Common - putative ABC transporter (substrate-binding protein) BRADO5472 25 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146342073 Common - putative cobalamin synthesis protein/P47K family protein BRADO5213 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 146337968 Common - asparagine synthetase BRADO0860 174 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 146337469 Common - conserved hypothetical protein; putative signal peptide BRADO0312 36 COG2267 PldB, Lysophospholipase Lipid metabolism 146338241 Common ruvA Holliday junction DNA helicase motor protein BRADO1145 209 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 146337921 Nonpathogen - hypothetical protein BRADO0810 1 None None None 146340522 Common - putative dehydrogenase/oxidoreductase BRADO3564 138 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146337931 Common cheW Chemotaxis protein cheW BRADO0821 128 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 146337258 Common trxA thioredoxin 1, redox factor BRADO0085 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 146342335 Common - Putative transposase BRADO5490 58 None None None 146342058 Common - putative Glycosyl transferase , group 4; Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase BRADO5198 81 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 146342244 Common - Ferredoxin, 2Fe-2S (AaFd4) BRADO5398 93 COG3411 COG3411, Ferredoxin Energy production and conversion 146339165 Common - putative transcriptional regulatory protein, MarR family BRADO2123 64 COG1846 MarR, Transcriptional regulators Transcription 146341181 Nonpathogen - hypothetical protein; putative signal peptide BRADO4254 1 None None None 146343869 Common - putative ABC transporter (permease protein) BRADO7120 119 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146340453 Common - putative lipase/esterase BRADO3493 141 COG0657 Aes, Esterase/lipase Lipid metabolism 146339040 Nonpathogen - hypothetical protein BRADO1993 3 None None None 146337509 Common - putative carbonic anhydrase 2 (Carbonate dehydratase 2)(cynT) BRADO0360 150 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 146342800 Nonpathogen - hypothetical protein; putative signal peptide BRADO5977 1 None None None 146340840 Common mdtB Multidrug resistance protein mdtB (Multidrug transporter mdtB) BRADO3903 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146339421 Common - putative transcriptional regulatory protein, LysR family BRADO2407 159 COG0583 LysR, Transcriptional regulator Transcription 146340238 Common - putative transcriptional regulator, LysR family BRADO3257 151 COG0583 LysR, Transcriptional regulator Transcription 146340800 Common - hypothetical protein BRADO3859 90 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 146339096 Common - hypothetical protein BRADO2050 12 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 146342607 Common - conserved hypothetical protein; putative polyketide biosynthesis protein BRADO5771 12 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146337631 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO0496 108 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146338547 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1467 3 None None None 146340828 Nonpathogen - hypothetical protein BRADO3891 3 None None None 146339700 Common groEL chaperonin GroEL BRADO2697 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 146339383 Common fabA 3-hydroxydecanoyl-(acyl carrier protein) dehydratase BRADO2366 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 146341551 Common - putative TonB-related protein BRADO4649 11 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 146342721 Common - hypothetical protein BRADO5888 9 None None None 146341577 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II BRADO4678 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337940 Nonpathogen - hypothetical protein; putative Zn-dependent protease with chaperone function BRADO0830 1 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 146343280 Common - hypothetical protein BRADO6501 36 COG3391 COG3391, Uncharacterized conserved protein Function unknown 146337916 Nonpathogen - hypothetical protein BRADO0804 2 None None None 146338577 Common - putative flagelar FliJ protein BRADO1499 17 None None None 146341345 Common - hypothetical protein BRADO4429 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 146340492 Common - putative Glutathione S-transferase BRADO3534 104 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146338150 Common - RNA polymerase sigma factor BRADO1047 169 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146338717 Nonpathogen - hypothetical protein BRADO1650 11 None None None 146341537 Common - putative serine protease (DegP periplasmic, membrane-associated serine endoprotease, protease Do), containing two PDZ domains. BRADO4635 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146343823 Common - putative Glycosyl transferase, group 1 BRADO7072 147 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146339582 Common - hypothetical protein BRADO2573 10 None None None 146337663 Common - hypothetical protein BRADO0529 40 COG3759 COG3759, Predicted membrane protein Function unknown 146339254 Common - conserved hypothetical protein; putative signal peptide;putative hemolysin activation/secretion protein BRADO2225 52 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 146338276 Common ftsH Cell division protein FtsH; ATP-dependent zinc-metallo protease BRADO1180 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 146342516 Nonpathogen - hypothetical protein BRADO5678 1 None None None 146339241 Common - putative Carbamoyltransferase family protein BRADO2207 52 COG2192 COG2192, Predicted carbamoyl transferase, NodU family Posttranslational modification, protein turnover, chaperones 146339432 Common - putative transcriptional regulatory protein, possibly two-component response regulator BRADO2418 31 COG5616 COG5616, Predicted integral membrane protein Function unknown 146342239 Common - putative nitrogen fixation protein nifQ BRADO5393 22 None None None 146340972 Nonpathogen - hypothetical protein BRADO4043 1 None None None 146343235 Common - putative transcriptional regulatory protein, LysR family BRADO6454 158 COG0583 LysR, Transcriptional regulator Transcription 146341244 Nonpathogen - hypothetical protein BRADO4320 3 None None None 146340650 Common - hypothetical protein BRADO3698 41 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 146338653 Common - putative thioredoxin reductase (FAD/NAD binding domain) BRADO1584 243 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 146339074 Nonpathogen - conserved hypothetical protein; putative coiled-coil domain BRADO2028 2 None None None 146339988 Common - putative Peptidase S10, serine carboxypeptidase; putative signal peptide BRADO2993 38 COG2939 COG2939, Carboxypeptidase C (cathepsin A) Amino acid transport and metabolism 146338730 Common - Putative transcriptional regulatory protein, TetR family BRADO1663 107 COG1309 AcrR, Transcriptional regulator Transcription 146343465 Common - hypothetical protein BRADO6695 102 COG0393 COG0393, Uncharacterized conserved protein Function unknown 146340003 Nonpathogen - hypothetical protein BRADO3008 1 None None None 146342292 Common sufB cysteine desulfurase activator complex subunit SufB BRADO5447 185 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 146339759 Common icd isocitrate dehydrogenase BRADO2759 60 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 146337184 Common - putative MATE efflux family protein; putative multidrug resistance protein norM (Multidrug-efflux transporter) BRADO0009 158 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 146343494 Common - hypothetical protein BRADO6726 21 None None None 161353767 Common rpsG 30S ribosomal protein S7 BRADO3062 248 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 146340535 Nonpathogen - hypothetical protein BRADO3578 3 None None None 146343040 Nonpathogen - hypothetical protein BRADO6230 5 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146337546 Common tesA multifunctional: acyl-CoA thioesterase I; protease I; lysophospholipaseL(I) BRADO0400 94 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 146338949 Common - putative sensor histidine kinase with a response regulator receiver domain BRADO1892 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146343005 Common - putative acyl carrier protein phosphodiesterase (ACP phosphodiesterase) BRADO6190 91 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 146337534 Common ccmG periplasmic thioredoxin (cytochrome c biogenesis) BRADO0388 146 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 146338710 Common bchM Mg-protoporphyrin IX methyl transferase BRADO1643 25 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146338822 Common - hypothetical protein; putative membrane protein BRADO1757 16 COG1289 COG1289, Predicted membrane protein Function unknown 146339987 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2992 2 None None None 146340225 Common - putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator. BRADO3244 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146342295 Common fixR FixR protein; short-chain dehydrogenase BRADO5450 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342619 Nonpathogen - hypothetical protein; putative exported protein BRADO5783 1 None None None 146340067 Common rplN 50S ribosomal subunit protein L14 BRADO3076 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 146338856 Common - putative transcriptional regulatory protein, LysR family; putative occR-like BRADO1795 182 COG0583 LysR, Transcriptional regulator Transcription 146342186 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5336 1 None None None 146340022 Common - conserved hypothetical protein; putative MutT/nudix family protein BRADO3028 72 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146341406 Common - putative ABC transporter, ATP-binding protein BRADO4496 243 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 146338609 Common - conserved hypothetical protein (Probable amidase) BRADO1537 65 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146339667 Common - hypothetical protein BRADO2661 42 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146341879 Nonpathogen - putative intracellular septation protein BRADO5011 5 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 146343767 Nonpathogen - hypothetical protein BRADO7014 1 None None None 146341172 Common - putative ABC transporter (permease protein) BRADO4245 108 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 146339574 Common - acetyl-CoA acetyltransferase BRADO2565 22 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146341107 Common nuoG NADH dehydrogenase subunit G BRADO4178 192 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 146342138 Common - conserved hypothetical protein; putative acetyltransferase BRADO5285 35 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 146339099 Nonpathogen - hypothetical protein BRADO2053 6 None None None 146343399 Common - hypothetical protein BRADO6628 3 None None None 146338551 Common cysQ CysQ protein BRADO1471 160 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 146338994 Nonpathogen - hypothetical protein BRADO1942 1 None None None 146342001 Common - putative extracellular ligand-binding receptor BRADO5137 86 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338451 Common - putative two-component response regulator BRADO1367 45 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343388 Common - putative ABC transporter, ATP-binding protein; putative carbohydrate transporter (maltose malK-like) BRADO6617 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146339506 Common - conserved hypothetical protein; putative Glyoxalase/bleomycin resistance protein/dioxygenase family protein BRADO2495 6 None None None 146339447 Common - putative two component response regulator receiver (CheY-like protein) corresponding to a FixJ-like fragment. BRADO2433 222 COG4566 TtrR, Response regulator Signal transduction mechanisms 146342114 Common fcl GDP-L-fucose synthase (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) BRADO5259 216 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146339834 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2835 2 None None None 146339412 Common cyoC cytochrome o ubiquinol oxidase, subunit III BRADO2397 157 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 146337194 Common - Conserved hypothetical protein; putative nitroreductase family protein BRADO0020 82 COG0778 NfnB, Nitroreductase Energy production and conversion 146338781 Common - putative long-chain-fatty-acid--CoA ligase BRADO1715 221 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339787 Common - hypothetical protein BRADO2788 49 COG2343 COG2343, Uncharacterized protein conserved in bacteria Function unknown 146339464 Nonpathogen - hypothetical protein BRADO2450 1 None None None 146340029 Common - putative aminoglycoside phosphotransferase BRADO3036 60 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 146343327 Common - putative permeases of the major facilitator superfamily; putative membrane protein BRADO6553 124 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146337255 Common - Putative Nucleotidyl transferase family protein; putative Mannose-1-phosphate guanyltransferase BRADO0082 209 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 146337444 Common - conserved hypothetical protein; putative hydrolase BRADO0284 8 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 146338133 Common - Putative ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) BRADO1030 237 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 146342528 Common - Putative xanthine dehydrogenase (YagS-like), FAD binding subunit BRADO5690 88 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146337909 Nonpathogen - putative conjugal transfer protein, traC BRADO0797 9 None None None 146343833 Common - hypothetical protein BRADO7083 17 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 146337285 Common - sigma-54 modulation protein BRADO0112 89 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 146337362 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA BRADO0195 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 146341759 Common - conserved hypothetical protein; putative signal peptide BRADO4876 7 None None None 146340085 Common - hypothetical protein BRADO3094 34 COG5470 COG5470, Uncharacterized conserved protein Function unknown 146342408 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) BRADO5567 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 146338940 Nonpathogen - hypothetical protein BRADO1880 1 None None None 146343817 Nonpathogen - hypothetical protein BRADO7066 1 None None None 146342223 Common - hypothetical protein; putative signal peptide; putative ABC transporter BRADO5375 46 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146341923 Common - Putative flagellin protein, C-terminus BRADO5058 11 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 146339656 Nonpathogen - hypothetical protein BRADO2649 1 None None None 146343849 Common - putative membrane protein, putative DoxD domain BRADO7099 28 COG2259 COG2259, Predicted membrane protein Function unknown 146339695 Common - Non-heme chloroperoxidase (Chloride peroxidase) (CPO-P) (Chloroperoxidase P) BRADO2692 83 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146339772 Common - putative nitrate ABC transporter (permease protein) (ntrB-like protein) BRADO2772 192 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146341131 Common - Putative Mandelate racemase/muconate lactonizing enzyme family protein BRADO4202 132 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 146341700 Common - conserved hypothetical protein, NTF2-like Superfamily protein BRADO4805 34 COG5485 COG5485, Predicted ester cyclase General function prediction only 146337657 Common - hypothetical protein BRADO0523 20 COG5470 COG5470, Uncharacterized conserved protein Function unknown 146339260 Common - putative peptidylprolyl isomerase BRADO2231 100 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 146343446 Common - conserved hypothetical protein; putative antioxydant protein BRADO6675 56 COG2128 COG2128, Uncharacterized conserved protein Function unknown 146341835 Common oxlT putative oxalate/formate antiporter BRADO4964 91 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146340643 Nonpathogen - hypothetical protein BRADO3691 1 None None None 146339176 Common - putative Beta-lactamase BRADO2135 154 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146339415 Common HtrA serine protease DO-like precursor BRADO2400 221 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146340375 Nonpathogen - hypothetical protein BRADO3403 2 None None None 146337640 Nonpathogen - hypothetical protein BRADO0506 2 None None None 146338448 Nonpathogen - hypothetical protein BRADO1364 1 None None None 146343201 Common - putative partition protein (ParA) BRADO6407 127 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146341031 Common - conserved hypothetical protein; putative NipSnap-like domain BRADO4102 14 None None None 146343183 Nonpathogen - hypothetical protein BRADO6384 2 None None None 146339918 Common - carboxypeptidase BRADO2922 131 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146337675 Common - putative efflux pump protein (HlyD domain), EmrA-FarA family BRADO0542 144 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146337266 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0093 1 None None None 146343797 Common - Putative glycosyltransferase, family 1 BRADO7046 104 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146341387 Common mscL mechanosensitive channel BRADO4474 134 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 146339350 Nonpathogen - hypothetical protein; putative signal peptide BRADO2331 1 None None None 146341201 Common srpH serine acetyltransferase (cysE-like) BRADO4275 193 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 146342234 Common fixA protein fixA; electron transfer flavoprotein beta-subunit (Beta-ETF) BRADO5386 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 146342700 Common - hypothetical protein BRADO5867 126 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 146341532 Common - conserved hypothetical protein; putative chaperone protein BRADO4630 33 COG5387 COG5387, Chaperone required for the assembly of the mitochondrial F1-ATPase Posttranslational modification, protein turnover, chaperones 146342448 Nonpathogen - hypothetical protein; putative signal peptide BRADO5607 4 None None None 146338692 Common pufL photosynthetic reaction center L subunit BRADO1624 20 None None None 146340540 Nonpathogen - hypothetical protein BRADO3583 2 None None None 146339027 Common - Ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein) (RISP) BRADO1976 106 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 146341370 Common - hypothetical protein BRADO4456 210 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146341829 Nonpathogen - hypothetical protein BRADO4958 2 None None None 146338662 Common - hypothetical protein BRADO1594 16 COG3823 COG3823, Glutamine cyclotransferase Posttranslational modification, protein turnover, chaperones 146343084 Common - conserved hypothetical protein; putative coiled-coil domain BRADO6279 25 COG1723 COG1723, Uncharacterized conserved protein Function unknown 146340545 Common - putative lysine 2,3-aminomutase BRADO3588 125 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 146340017 Common - ABC transporter protein, ATP-binding protein; putative oligopeptide/dipeptide ABC transporter, ABC transporter BRADO3023 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146342289 Common sufS cysteine desulfurase BRADO5444 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 146338753 Common hupD Hydrogenase maturation protein hupD BRADO1687 80 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 146337697 Common - conserved hypothetical protein with GGDEF domain (N-terminal) and EAL domain (C-terminal); putative membrane protein BRADO0565 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146340659 Common - putative 6-oxocamphor hydrolase BRADO3707 107 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146342285 Common nifD nitrogenase molybdenum-iron protein alpha chain, nifD BRADO5439 52 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146342817 Nonpathogen - hypothetical protein BRADO5994 1 None None None 146341934 Common - Putative Universal stress protein (Usp) BRADO5069 38 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 146341709 Common - putative glycosyl transferase, WecB/TagA/CpsF family; putative N-acetyl-mannosamine transferase (Teichoic acid biosynthesis proteins) BRADO4814 96 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 146341786 Common cobH Precorrin-8X methylmutase BRADO4905 118 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 146339021 Common - Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains BRADO1970 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146340568 Nonpathogen - hypothetical protein BRADO3612 2 None None None 146342357 Common - Putative Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein (LIVAT-BP) (Leu/Ile/Val/Thr/Ala-binding protein) BRADO5513 116 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338228 Common - hypothetical protein BRADO1128 31 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 146342864 Common - DNA-binding transcriptional activator, 3HPP-binding BRADO6044 103 COG1414 IclR, Transcriptional regulator Transcription 146340868 Common - putative methyltransferase FkbM BRADO3933 58 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 146343077 Common - Putative ABC transporter (permease protein) BRADO6269 187 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 146337214 Common - putative Haloacid dehalogenase-like hydrolase; putative Phosphatase BRADO0040 134 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 146337223 Nonpathogen - hypothetical protein BRADO0049 8 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146339707 Common - putative transcriptional regulatory protein, Ros/MucR family BRADO2705 34 COG4957 COG4957, Predicted transcriptional regulator Transcription 146339802 Common - putative transcriptional regulatory protein, Ars Family BRADO2803 89 COG0640 ArsR, Predicted transcriptional regulators Transcription 146341617 Common - conserved hypothetical protein; putative spermidine synthase (fragment) BRADO4719 42 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 146343504 Common - putative amino-acid ABC transport system, periplasmic binding protein BRADO6736 85 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339428 Common - isoquinoline 1-oxidoreductase alpha subunit BRADO2414 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146343400 Nonpathogen - hypothetical protein BRADO6629 2 None None None 146337712 Common - putative nitrilase BRADO0581 204 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146343155 Common - putative Pyruvate, phosphate dikinase BRADO6353 111 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 146341691 Common - putative sugar ABC transporter, ATP-binding protein BRADO4796 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146343698 Common - Putative phage integrase BRADO6943 102 COG0582 XerC, Integrase DNA replication, recombination, and repair 146341423 Common rpmG 50S ribosomal protein L33 BRADO4513 123 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 146343842 Common - putative spermidine/putrescine ABC transporter, (ATP-binding protein) BRADO7092 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146342809 Nonpathogen - hypothetical protein; putative signal peptide BRADO5986 1 None None None 146340512 Common - conserved hypothetical protein; putative outer-membrane immunogenic protein precursor; putative exported protein BRADO3554 9 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146337268 Common - Putative peptidase S49 family; putative signal peptide peptidase SppA BRADO0095 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146338164 Common - Putative cytochrome c peroxidase BRADO1062 82 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 146340360 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase BRADO3388 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342472 Nonpathogen - Fumarate hydratase class II (fragment) BRADO5631 1 None None None 146337913 Common - hypothetical protein BRADO0801 10 None None None 146341306 Nonpathogen - hypothetical protein BRADO4387 1 None None None 146341953 Nonpathogen - hypothetical protein BRADO5089 4 COG5373 COG5373, Predicted membrane protein Function unknown 146340322 Common purN phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) BRADO3345 220 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 146340874 Nonpathogen - hypothetical protein BRADO3940 1 None None None 146337439 Common - hypothetical protein BRADO0279 19 COG0762 COG0762, Predicted integral membrane protein Function unknown 146338118 Common - putative pilus assembly protein; putative membrane protein BRADO1014 68 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 146340565 Nonpathogen - hypothetical protein BRADO3609 1 None None None 146341450 Nonpathogen - hypothetical protein BRADO4541 1 None None None 146343658 Common - putative Flavin-containing monooxygenase BRADO6900 56 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146342381 Common - putative transcriptional regulator, Crp/Fnr family BRADO5538 31 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146337692 Common - putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) BRADO0560 169 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 146340395 Nonpathogen - conserved hypothetical protein; putative Cytochrome c region BRADO3428 3 None None None 146338965 Common - putative ATP-binding protein of sugar ABC transporter BRADO1909 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146342022 Common - putative Acyltransferase, group 3; Putative O-antigen acetylase BRADO5159 81 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146343402 Common - putative methyl-accepting chemotaxis receptor/sensory transducer precursor BRADO6631 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338651 Common - Putative oligopeptide ABC transporter (substrate-binding protein) BRADO1582 201 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146339934 Common - putative hydrolase BRADO2938 152 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146343839 Common - putative polysaccharide deacetylase family protein BRADO7089 79 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146343505 Common - conserved hypothetical protein; putative SAM-dependent methyltransferases BRADO6737 95 COG4976 COG4976, Predicted methyltransferase (contains TPR repeat) General function prediction only 146338354 Nonpathogen - putative anti-sigma-factor antagonist family BRADO1263 2 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 146339505 Common gdh glutamate dehydrogenase (NAD(P)+) oxidoreductase protein BRADO2494 174 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 146340332 Common aspS aspartyl-tRNA synthetase BRADO3359 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146340391 Nonpathogen - hypothetical protein BRADO3424 3 None None None 146342079 Common - Putative pilus assembly protein cpaD BRADO5220 14 COG5461 COG5461, Type IV pili component Cell motility and secretion 146343693 Common - Bacteriophage tail fiber protein (fragment) BRADO6936 13 None None None 146341746 Nonpathogen - hypothetical protein BRADO4862 1 None None None 146340389 Common - putative 2-hydroxyacid dehydrogenase family protein. BRADO3422 221 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146343582 Common - putative dipeptide/oligopeptide/nickel ABC transporter, ATP-binding protein BRADO6820 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146343418 Common rbtD Ribitol 2-dehydrogenase (RDH) BRADO6647 233 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146341560 Common - putative O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein BRADO4659 152 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 146342175 Common - hypothetical protein BRADO5325 34 COG4645 COG4645, Uncharacterized protein conserved in bacteria Function unknown 146338292 Common pntA2 nicotinamide nucleotide transhydrogenase, subunit alpha1 BRADO1196 166 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 146339849 Common livM high-affinity branched-chain amino acid ABC transporter (permease protein) BRADO2851 142 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146340106 Common - Conserved hypothetical protein: putative Transcriptional regulatory protein BRADO3117 136 COG3899 COG3899, Predicted ATPase General function prediction only 146338469 Common - putative transcriptional regulatory protein, Fis family BRADO1386 76 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 146339708 Common - Putative sufE-like protein BRADO2706 98 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 146340802 Common - putative transport protein (MFS superfamily); putative tartrate transporter BRADO3861 107 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146341199 Common - putative acyl-CoA dehydrogenase BRADO4273 107 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146338599 Nonpathogen - hypothetical protein BRADO1527 10 None None None 146341373 Common yqjG putative glutathione S-transferase with thioredoxin-like domain BRADO4459 79 COG0435 ECM4, Predicted glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146343186 Common - conserved hypothetical protein; putative antirestriction protein BRADO6387 48 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 146341274 Nonpathogen - hypothetical protein BRADO4351 5 None None None 146339019 Common - putative poly(A) polymerase BRADO1968 168 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 146341413 Common pyrC dihydroorotase BRADO4503 211 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 146340427 Common - conserved hypothetical protein; putative signal peptide BRADO3465 16 COG5276 COG5276, Uncharacterized conserved protein Function unknown 146338789 Common - putative SURF1 family protein BRADO1723 68 COG3346 COG3346, Uncharacterized conserved protein Function unknown 146341339 Common hppA membrane-bound proton-translocating pyrophosphatase BRADO4423 98 COG3808 OVP1, Inorganic pyrophosphatase Energy production and conversion 146338424 Common - Acetyl-coenzyme A synthetase BRADO1339 223 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146341827 Common - formyl-coenzyme A transferase BRADO4956 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146338919 Common - conserved hypothetical protein; putative methyltransferase BRADO1859 63 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 146341480 Nonpathogen - hypothetical protein BRADO4573 5 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 146343225 Common - putative transposase from insertion sequence BRADO6435 24 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 146339024 Common - putative 6-pyruvoyltetrahydropterin synthase BRADO1973 91 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 146340002 Common - putative rRNA methylase; putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB-like BRADO3007 214 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 146341692 Common - putative sugar ABC transporter, ATP-binding protein BRADO4797 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146342043 Common - hypothetical protein; putative Glycosyl transferase, group 2 BRADO5182 169 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146340901 Common - hypothetical protein with TPR-like repeat BRADO3968 17 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 146341620 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4722 1 None None None 146342428 Common feoA Putative FeoA family protein BRADO5587 8 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 161353768 Common rpsL 30S ribosomal protein S12 BRADO3061 242 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 146339088 Common - putative methyl-accepting chemotaxis receptor/sensory transducer precursor BRADO2042 141 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146342399 Common - putative Oxidoreductase, short-chain dehydrogenase/reductase family BRADO5556 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146337721 Common secA preprotein translocase subunit SecA BRADO0590 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 146338912 Nonpathogen - hypothetical protein BRADO1852 2 None None None 146342015 Common manC mannose-1-phosphate guanyltransferase; putative capsular polysaccharide biosynthesis protein BRADO5152 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 146339417 Common - hypothetical protein BRADO2403 20 COG2252 COG2252, Permeases General function prediction only 146338287 Common - putative response regulator in two-component regulatory system, sigma 54-dependent. BRADO1191 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343881 Common - putative ATP-dependent AMP-binding enzyme family; putative crotonobetaine/carnitine-CoA ligase BRADO7132 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340679 Common - putative branched-chain amino acid transport system ATP-binding protein BRADO3730 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337918 Common - putative Subtilisin-like serine protease BRADO0807 103 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 146339351 Common - hypothetical protein BRADO2332 45 COG3552 CoxE, Protein containing von Willebrand factor type A (vWA) domain General function prediction only 146340946 Common - acyl-CoA synthetase BRADO4017 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339698 Common degP Serine protease do-like precursor BRADO2695 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146338721 Common cbbR RuBisCO operon transcriptional regulatory protein, LysR family BRADO1654 190 COG0583 LysR, Transcriptional regulator Transcription 146342571 Nonpathogen - hypothetical protein BRADO5734 3 None None None 146338083 Common livG High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) BRADO0979 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146339090 Common - hypothetical protein BRADO2044 15 COG5350 COG5350, Predicted protein tyrosine phosphatase General function prediction only 146341726 Common - putative SAM-dependent methyltransferase BRADO4831 44 None None None 146342958 Common - putative Pirin family protein BRADO6141 146 COG1741 COG1741, Pirin-related protein General function prediction only 146340301 Common - hypothetical protein BRADO3324 61 None None None 146342443 Common - putative permease of the major facilitator superfamily BRADO5602 141 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146343799 Common - Hypothetical protein, putative ubiquinone/menaquinone biosynthesis methyltransferase-related protein BRADO7048 200 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146339370 Common - putative transcriptional regulator, AraC/XylS family BRADO2351 84 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146339673 Nonpathogen - hypothetical protein BRADO2668 12 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146339900 Common - conserved hypothetical protein; putative proteasome-type protease domain BRADO2902 54 COG3484 COG3484, Predicted proteasome-type protease Posttranslational modification, protein turnover, chaperones 146342088 Common - hypothetical protein BRADO5230 15 COG0645 COG0645, Predicted kinase General function prediction only 146342518 Nonpathogen - hypothetical protein BRADO5680 1 None None None 146342365 Nonpathogen - hypothetical protein BRADO5522 3 None None None 146341772 Common - Putative flagellar hook-associated protein 2 (HAP2, fliD protein) BRADO4889 93 COG1345 FliD, Flagellar capping protein Cell motility and secretion 146341971 Common - Putative transcriptional regulator, arsR family; arsR2 BRADO5107 73 COG0640 ArsR, Predicted transcriptional regulators Transcription 146343219 Common - putative metallo-beta-lactamase superfamily protein BRADO6429 82 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146337365 Common - hypothetical protein BRADO0198 97 COG1981 COG1981, Predicted membrane protein Function unknown 146338038 Common Hadh2 3-hydroxyacyl-CoA dehydrogenase (short-chain) BRADO0931 233 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337580 Common rpmA 50S ribosomal protein L27 BRADO0435 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 146338782 Common - putative transporter (permease); putative malonate transporter BRADO1716 104 COG0679 COG0679, Predicted permeases General function prediction only 146341956 Common - Putative UDP-2,3-diacylglucosamine hydrolase BRADO5092 68 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 146338670 Common - N-formimino-L-glutamate deiminase BRADO1602 137 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 146339092 Common tag 3-methyl-adenine DNA glycosylase I, constitutive BRADO2046 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 146340374 Common - conserved hypothetical protein; putative signal peptide BRADO3402 11 None None None 146340573 Nonpathogen - hypothetical protein BRADO3618 1 None None None 146340666 Common - conserved hypothetical protein; putative signal peptide BRADO3716 22 None None None 146343700 Nonpathogen - hypothetical protein BRADO6945 1 None None None 146341304 Common - putative ATPase, AAA family BRADO4385 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 146342687 Common braF Putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO5854 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146342507 Common - putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan binding domain BRADO5669 110 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 146342779 Nonpathogen - conserved hypothetical protein; putative outer membrane protein (OMPA-like), hemin-binding protein. BRADO5954 5 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146339990 Common - conserved hypothetical protein; putative signal peptide BRADO2995 9 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 146341779 Common cbiD cobalt-precorrin-6A synthase BRADO4898 83 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 146338250 Nonpathogen - hypothetical protein BRADO1154 1 COG2718 COG2718, Uncharacterized conserved protein Function unknown 146341353 Common - hypothetical protein BRADO4437 18 COG1714 COG1714, Predicted membrane protein/domain Function unknown 146341424 Common - putative bacterial chemotaxis sensory transducer BRADO4514 118 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340049 Common - putative ABC-type multidrug transport system, ATPase and permease components BRADO3057 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 146341284 Common ssuB alkanesulfonate ABC transporter, ATP binding protein BRADO4363 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146340432 Nonpathogen - hypothetical protein BRADO3471 1 None None None 146342503 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase BRADO5664 212 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 146339475 Common - putative transcriptional regulatory protein. BRADO2463 42 COG1396 HipB, Predicted transcriptional regulators Transcription 146338679 Common crtB phytoene synthase BRADO1611 101 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 146343637 Common - hypothetical protein BRADO6877 62 COG3246 COG3246, Uncharacterized conserved protein Function unknown 146343514 Common - putative ABC transporter, periplasmic amino acid-binding protein BRADO6746 165 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146339625 Common - Putative ABC transport permease (membrane spanning protein) BRADO2618 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146343739 Common - putative peptidase S9A family; putative Protease II BRADO6986 101 COG1770 PtrB, Protease II Amino acid transport and metabolism 146338938 Common - conserved hypothetical protein, homolog to slyX BRADO1878 44 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 146339713 Nonpathogen - hypothetical protein BRADO2711 3 None None None 146340863 Nonpathogen - hypothetical protein; putative resolvase (fragment) BRADO3927 3 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 146339581 Common - hypothetical protein BRADO2572 62 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 146341699 Common - conserved hypothetical protein; putative aldolase/epimerase (AraD-like) BRADO4804 11 COG3347 COG3347, Uncharacterized conserved protein Function unknown 146338597 Common - putative permease of the major facilitator superfamily BRADO1524 92 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146340510 Common - putative 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase) BRADO3552 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337422 Common - conserved hypothetical protein; putative predicted Fe-S oxidoreductases BRADO0260 110 COG1964 COG1964, Predicted Fe-S oxidoreductases General function prediction only 146339957 Common - conserved hypothetical protein with 2 CBS domains. BRADO2961 159 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 146339653 Common - putative DNA-directed DNA polymerase BRADO2646 63 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 146343131 Common - conserved hypothetical protein; putative signal peptide; Ricin-type beta-trefoil lectin domain BRADO6329 12 None None None 146341340 Common thiL thiamin-monophosphate kinase BRADO4424 193 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 146341086 Common - Putative TonB dependent receptor BRADO4157 77 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 146340978 Common - hypothetical protein BRADO4049 133 COG1354 COG1354, Uncharacterized conserved protein Function unknown 146339443 Common - hypothetical protein BRADO2429 46 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 146337187 Common - putative Beta-lactamase family protein; putative 6-aminohexanoate-dimer hydrolase BRADO0012 67 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146337462 Common amtB2 ammonium transport protein (Amt family) BRADO0305 202 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 146339722 Common - putative Permease of the major facilitator superfamily BRADO2720 209 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146339823 Common - Conserved hypothetical protein; putative Diacylglycerol kinase related protein BRADO2824 116 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 146341183 Common - putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO4256 49 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146342803 Common - conserved hypothetical protein; putative dimeric alpha-beta barrel domain BRADO5980 37 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 146342084 Common - putative transcriptional regulatory protein, MarR family BRADO5226 62 COG1846 MarR, Transcriptional regulators Transcription 146342893 Common - putative cytochrome c BRADO6074 54 COG3474 COG3474, Cytochrome c2 Energy production and conversion 146342227 Common - putative ABC/TRAP transporter component (periplasmic binding protein-like I) BRADO5379 115 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342764 Common - Putative efflux transporter BRADO5938 169 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146340514 Common - conserved hypothetical protein; putative DedA family; putative integral membrane protein. BRADO3556 39 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 146339963 Common - conserved hypothetical protein; putative O-Methyltransferase domain BRADO2967 26 COG3315 COG3315, O-Methyltransferase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 146341702 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO4807 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146340362 Nonpathogen - hypothetical protein BRADO3390 1 None None None 146340826 Nonpathogen - hypothetical protein BRADO3889 1 None None None 146340851 Common metC cystathionine beta-lyase, PLP-dependent (beta-cystathionase) BRADO3914 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 146342487 Common - putative Drug resistance transporter, Bcr/CflA family; Major Facilitator Superfamily (MFS) BRADO5648 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338173 Common cysT sulfate/thiosulfate transport protein (ABC superfamily, membrane) BRADO1071 236 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 146341344 Common ribD bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase BRADO4428 229 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 146337937 Common - Hypothetical protein; putative Cobalamin biosynthesis protein cobT (fragment) BRADO0827 41 COG4547 CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) Coenzyme metabolism 146338943 Common - hypothetical protein BRADO1885 30 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 146343467 Common - carboxymuconolactone decarboxylase BRADO6697 96 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 146339690 Common folP Dihydropteroate synthase (DHPS) (Dihydropteroate pyrophosphorylase) BRADO2685 217 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 146340971 Common surE stationary phase survival protein SurE BRADO4042 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 146343154 Common - hypothetical protein BRADO6352 14 None None None 146339425 Nonpathogen - putative cytochrome c, putative soxX protein BRADO2411 10 None None None 146338255 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1159 3 None None None 146340649 Common - putative glyoxalase (dioxygenase domain) BRADO3697 26 None None None 146340457 Common - putative signal transduction histidine kinase with response regulator receiver domain BRADO3497 219 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146340653 Common - hypothetical protein BRADO3701 15 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 146337261 Common - folC bifunctional protein BRADO0088 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 146338854 Common - putative UDP-glucose 4-epimerase BRADO1793 149 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146337247 Common mutM Bifunctional mutM protein:Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase); (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) BRADO0074 180 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 146343305 Common - putative acyl-CoA ligase BRADO6529 214 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339150 Common - hypothetical protein BRADO2108 30 COG3535 COG3535, Uncharacterized conserved protein Function unknown 146337566 Common - Putative adenylate cyclase BRADO0421 56 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146337674 Common - putative drug resistance transporter, EmrB-FarB-QacA family BRADO0541 223 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146339346 Common - putative acid-thiol ligase BRADO2327 222 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146340919 Common tgt queuine tRNA-ribosyltransferase BRADO3990 229 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 146341190 Nonpathogen - conserved hypothetical protein; putative membrane (permease) protein BRADO4263 8 None None None 146338992 Nonpathogen - hypothetical protein BRADO1940 7 None None None 146337407 Common argG argininosuccinate synthase BRADO0243 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 146342632 Common pqqE pyrroloquinoline quinone biosynthesis protein PqqE BRADO5797 160 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 146343074 Common - hypothetical protein BRADO6266 46 COG2319 COG2319, FOG: WD40 repeat General function prediction only 146341035 Common - putative acetyltransferase, GNAT family BRADO4106 29 COG0456 RimI, Acetyltransferases General function prediction only 146339941 Nonpathogen - hypothetical protein BRADO2945 2 None None None 146342951 Nonpathogen - hypothetical protein BRADO6134 2 None None None 146343057 Common - conserved hypothetical protein; putative stomatin domain BRADO6248 218 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 146339777 Common purS phosphoribosylformylglycinamidine synthase subunit PurS BRADO2777 64 COG1828 PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Nucleotide transport and metabolism 146338322 Common nirK Copper-containing Nitrite reductase (NO-forming) nirK BRADO1227 49 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 146339437 Common - putative transcriptional regulatory protein, GntR family BRADO2423 107 COG1802 GntR, Transcriptional regulators Transcription 146337502 Common - putative oxidoreductase molybdopterin binding BRADO0350 130 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 146339985 Common ppnK inorganic polyphosphate/ATP-NAD kinase BRADO2990 177 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 146340654 Common - putative fumarylacetoacetate hydrolase BRADO3702 65 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146342979 Common - Putative acyltransferase 3 family protein; Putative Glucans biosynthesis protein C BRADO6162 37 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146343852 Common - putative SEC-C motif domain protein BRADO7102 125 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 146339682 Common - arginine/ornithine transport system ATPase BRADO2677 101 COG1703 ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family Amino acid transport and metabolism 146339840 Common allA Ureidoglycolate hydrolase BRADO2841 35 COG3194 DAL3, Ureidoglycolate hydrolase Nucleotide transport and metabolism 146337669 Common - hypothetical protein BRADO0535 5 None None None 146339308 Common - putative NADH dehydrogenase (NADH quinone oxidoreductase)(nuoL3-like) BRADO2284 206 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 146342880 Common - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase BRADO6060 221 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 146341259 Common - putative dehydrogenase/oxidoreductase BRADO4335 48 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146340855 Common - putative Phosphoesterase, PA-phosphatase related (membrane associated) BRADO3918 10 None None None 146342692 Common - putative cbbQ/nirQ/norQ/gpvN family protein BRADO5859 93 COG0714 COG0714, MoxR-like ATPases General function prediction only 146339563 Common - putative methyl-accepting chemotaxis receptor/sensory transducer (Chemoreceptor) BRADO2554 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338280 Common - hypothetical protein; putative membrane protein BRADO1184 7 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146339162 Common - putative high-affinity branched-chain amino acid transport system permease protein livM BRADO2120 141 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146338604 Common - 2-haloacid dehalogenase BRADO1532 65 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 146340189 Common - hypothetical protein BRADO3205 38 None None None 146339869 Common - putative ABC transporter (permease proteine) BRADO2871 148 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146338187 Common - putative 3-oxoacyl-acyl carrier protein reductase BRADO1085 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146338521 Common - hypothetical protein BRADO1440 32 COG3777 COG3777, Uncharacterized conserved protein Function unknown 146342479 Common - putative membrane bound O-acyl transferase (MBOAT) family protein; putative Alginate O-acetyltransferase BRADO5639 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 146340527 Nonpathogen - hypothetical protein BRADO3570 3 None None None 146340790 Nonpathogen - hypothetical protein BRADO3848 1 COG5373 COG5373, Predicted membrane protein Function unknown 146341109 Nonpathogen - hypothetical protein BRADO4180 2 None None None 146339948 Common - putative carboxymethylenebutenolidase precursor (Dienelactone hydrolase; DLH) BRADO2952 111 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146343627 Common - conserved hypothetical protein; putative signal peptide BRADO6866 51 COG5621 COG5621, Predicted secreted hydrolase General function prediction only 146339975 Common - hypothetical protein BRADO2980 180 COG0759 COG0759, Uncharacterized conserved protein Function unknown 146340767 Common - epoxide hydrolase BRADO3825 130 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342636 Common - putative 2-oxoglutarate synthase subunit A (korA-like) BRADO5801 108 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 146342598 Common - putative N-acetyltransferase (GCN5-related) BRADO5761 92 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146343212 Common - putative short-chain dehydrogenase/reductase protein; putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) BRADO6422 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337536 Common ccmC heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis) BRADO0390 113 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 146340066 Common rpsQ 30S ribosomal protein S17 BRADO3075 219 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 146341250 Nonpathogen - hypothetical protein BRADO4326 2 None None None 146343141 Nonpathogen - putative General secretion pathway protein N, GspN BRADO6339 4 None None None 146342237 Common nifV homocitrate synthase BRADO5390 204 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 146340074 Common rpsE 30S ribosomal protein S5 BRADO3083 247 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 146341204 Common - putative D-methionine ABC transporter, perisplasmic binding lipoprotein (metQ-like) BRADO4278 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 146338989 Common pgm phosphoglucomutase BRADO1937 224 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 146339488 Common - putative aldo/keto reductase BRADO2477 194 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 146343101 Common - putative transcriptional regulatory protein, MarR family BRADO6297 69 COG1846 MarR, Transcriptional regulators Transcription 146341215 Common - hypothetical protein BRADO4289 8 None None None 146337326 Common gpmA phosphoglyceromutase BRADO0157 176 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 146341559 Common - Putative component of multidrug efflux pump, mdtB-Like BRADO4657 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146339324 Common - two-component C4-dicarboxylate transport system, sensor protein BRADO2303 217 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146342107 Common - Putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO5251 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337416 Common phhB pterin-4-alpha-carbinolamine dehydratase BRADO0254 75 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 146337841 Common - Hypothetical protein; putative plasmid stabilization system protein BRADO0722 5 COG3668 ParE, Plasmid stabilization system protein General function prediction only 146338459 Common - hypothetical protein; putative Type III restriction enzyme BRADO1376 15 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 146343561 Common - putative ABC transporter, substrate-binding protein BRADO6798 58 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146338017 Common - conserved hypothetical protein; putative membrane protein; putative Transglycosylase-associated protein BRADO0910 7 COG2261 COG2261, Predicted membrane protein Function unknown 146339871 Common - putative feruloyl esterase BRADO2873 21 None None None 146337400 Common sdhB succinate dehydrogenase iron-sulfur subunit BRADO0235 200 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 146342305 Common fghA S-formylglutathione hydrolase BRADO5460 99 COG0627 COG0627, Predicted esterase General function prediction only 146342924 Common - hypothetical protein BRADO6105 192 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 146340897 Common - putative Ferredoxin--NAD(+) reductase BRADO3963 96 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 146338168 Nonpathogen - hypothetical protein BRADO1066 8 None None None 146343259 Common - hypothetical protein BRADO6479 3 None None None 146343553 Common - putative hydrolase (alpha/beta hydrolase superfamily) BRADO6790 38 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146343686 Nonpathogen - hypothetical protein BRADO6929 1 None None None 146341629 Common - putative outer membrane lipoprotein (NodT-like), RND efflux system BRADO4732 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146342110 Common - conserved hypothetical protein; putative exported protein; putative ABC-type branched-chain amino acid transport systems BRADO5254 129 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340558 Nonpathogen - hypothetical protein BRADO3602 1 None None None 146341935 Common - putative transposase BRADO5070 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146337859 Common - conserved hypothetical protein; Putative Thioesterase/thiol ester dehydrase-isomerase BRADO0742 11 None None None 146339152 Common - putative spermidine/putrescine-binding periplasmic protein BRADO2110 70 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146339947 Common - Putative transposase BRADO2951 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146343664 Common - putative acyl-CoA dehydrogenase BRADO6906 32 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146339104 Common - conserved hypothetical protein containing Sua5/YciO/YrdC/YwlC domains BRADO2058 181 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 146340282 Nonpathogen - hypothetical protein BRADO3305 3 None None None 146338413 Nonpathogen - putative S-adenosyl-L-methionine-dependent methyltransferase BRADO1328 5 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146340224 Common - conserved hypothetical protein; putative signal peptide BRADO3243 8 None None None 146340289 Nonpathogen - hypothetical protein BRADO3312 1 None None None 146339103 Common - putative D-lactate ferricytochrome C oxidoreductase BRADO2057 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146338493 Common - putative periplasmic substrate-binding subunit (ABC transporter) BRADO1411 24 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146337736 Nonpathogen - hypothetical protein BRADO0608 3 None None None 146343335 Nonpathogen - hypothetical protein BRADO6561 3 None None None 146343778 Common - Putative Glycosyl transferase, group 2 BRADO7025 88 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 146343198 Common - putative DNA breaking-rejoining enzyme, catalytic core superfamily; putative phage integrase BRADO6404 23 None None None 146340583 Common - conserved hypothetical protein; putative peptidase S49 domain. BRADO3628 101 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146343230 Nonpathogen - hypothetical protein; putative signal peptide BRADO6449 1 None None None 146341495 Nonpathogen - hypothetical protein BRADO4588 1 None None None 146342100 Common - hypothetical protein BRADO5244 23 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 146341677 Common - hypothetical protein BRADO4782 249 COG5441 COG5441, Uncharacterized conserved protein Function unknown 146341963 Nonpathogen - hypothetical protein; putative membrane protein BRADO5099 1 None None None 146337835 Common - hypothetical protein BRADO0716 22 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 146343493 Common - putative acyl-CoA dehydrogenase BRADO6725 152 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146340446 Common - putative D-amino-acid dehydrogenase, FAD dependent BRADO3486 108 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146339801 Common murI glutamate racemase BRADO2802 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 146339661 Common - hypothetical protein BRADO2654 151 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146337967 Common - Putative Glutamine amidotransferase, class-II BRADO0859 51 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 146339122 Common - hypothetical protein BRADO2076 59 COG1260 INO1, Myo-inositol-1-phosphate synthase Lipid metabolism 146341805 Common - hypothetical protein BRADO4925 107 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146338590 Nonpathogen - hypothetical protein BRADO1517 1 None None None 146342985 Common - Putative polyphosphate-selective porin O BRADO6168 24 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 146342728 Common - hypothetical protein BRADO5898 27 None None None 146341816 Common - hypothetical protein BRADO4941 28 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146341855 Common recA recombinase A BRADO4985 215 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 146343764 Nonpathogen - hypothetical protein BRADO7011 2 None None None 146343324 Nonpathogen - hypothetical protein BRADO6549 1 None None None 146343859 Nonpathogen - conserved hypothetical protein; putative permease protein BRADO7109 1 None None None 146342625 Common - conserved hypothetical protein; putative exported protein BRADO5790 68 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 146342760 Common - hypothetical protein BRADO5934 13 COG5373 COG5373, Predicted membrane protein Function unknown 146338628 Common - putative Metallo-hydrolase BRADO1556 4 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 146338876 Common - Aldose 1-epimerase (Galactose mutarotase) BRADO1815 88 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 146339838 Common dctA C4-dicarboxylate transporter DctA BRADO2839 159 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 146338685 Common bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase BRADO1617 20 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 146337195 Common - putative haloacid dehalogenase-like hydrolase family protein; putative Phosphoglycolate phosphatase BRADO0021 166 COG0546 Gph, Predicted phosphatases General function prediction only 146342343 Common - Putative ABC transporter (substrate binding protein) BRADO5499 70 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146342187 Common - hypothetical protein BRADO5338 2 None None None 146343792 Common - hypothetical protein; putative Hemolysin-type calcium-binding repeats BRADO7040 114 None None None 146342351 Common hyuB N-methylhydantoinase B (Hydantoin utilization protein B) BRADO5507 95 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339964 Common - Conserved hypothetical protein; putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains BRADO2968 190 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146340836 Nonpathogen - hypothetical protein BRADO3899 1 None None None 146343463 Common - putative zinc protease (mpp-like) BRADO6692 201 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 146342868 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6048 6 None None None 146338813 Common - putative ABC transporter (ATP-binding protein) BRADO1747 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 146341292 Nonpathogen - hypothetical protein BRADO4373 3 None None None 146337333 Common dnaK Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) BRADO0164 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 146341362 Common - putative chromate transporter (ChrA-like) BRADO4446 105 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 146341011 Common - threonine synthase BRADO4082 187 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 146338516 Common - putative hemmolysin III, HlyIII family BRADO1434 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 146342132 Common - putative transcriptional regulatory protein, GntR family BRADO5279 135 COG1802 GntR, Transcriptional regulators Transcription 146337495 Common - hypothetical protein BRADO0341 10 COG5508 COG5508, Uncharacterized conserved small protein Function unknown 146341569 Nonpathogen - hypothetical protein BRADO4670 1 None None None 146343159 Common - putative carbohydrate porin, OprB family BRADO6357 20 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 146337525 Common ffh 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA, ffh family (fifty four homolog) BRADO0379 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 146341007 Nonpathogen - putative Acetyltransferase, GNAT family BRADO4078 4 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 146337347 Common gshB glutathione synthetase BRADO0180 133 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 146342652 Common - putative maltooligosyltrehalose trehalohydrolase BRADO5819 161 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 146341453 Common - hypothetical protein BRADO4544 53 COG0730 COG0730, Predicted permeases General function prediction only 146343252 Common - putative two-component response regulator BRADO6472 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343291 Nonpathogen - hypothetical protein BRADO6512 1 None None None 146338645 Common glk Glucokinase (Glucose kinase) BRADO1576 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 146341072 Common - hypothetical protein; putative serine protease BRADO4143 221 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146341053 Common glnS glutaminyl-tRNA synthetase BRADO4124 248 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 146341237 Common - hypothetical protein BRADO4313 55 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 146340832 Common - putative two-component response regulatory protein, response regulator receiver BRADO3895 194 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146339701 Nonpathogen - hypothetical protein BRADO2698 1 None None None 146337497 Common acsA Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) BRADO0344 214 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146339177 Nonpathogen - hypothetical protein; putative phosphatase BRADO2137 3 COG1409 Icc, Predicted phosphohydrolases General function prediction only 146337628 Nonpathogen - hypothetical protein BRADO0493 1 None None None 146341579 Common - conserved hypothetical protein; putative glyoxalase/dioxygenase BRADO4680 52 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146337256 Common - putative helicase-exonuclease type V protein family, addB subunit BRADO0083 53 COG3893 COG3893, Inactivated superfamily I helicase DNA replication, recombination, and repair 146337816 Common - Putative ABC transporter, permease protein BRADO0695 136 COG4986 COG4986, ABC-type anion transport system, duplicated permease component Inorganic ion transport and metabolism 146342910 Common - putative alpha/beta hydrolase superfamily protein BRADO6091 17 COG2267 PldB, Lysophospholipase Lipid metabolism 146339590 Common - Putative gluconolactonase BRADO2582 75 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146338316 Common - probable ABC transporter substrate-binding protein BRADO1221 14 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146340697 Common aceA isocitrate lyase BRADO3748 115 COG2224 AceA, Isocitrate lyase Energy production and conversion 146337603 Nonpathogen - hypothetical protein BRADO0464 1 COG1591 COG1591, Holliday junction resolvase - archaeal type DNA replication, recombination, and repair 146341538 Common - putative transcriptional regulatory protein, related to MarR family BRADO4636 150 COG1733 COG1733, Predicted transcriptional regulators Transcription 146337211 Common - putative Glycoprotease family protein BRADO0037 201 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 146340483 Common - Putative cystathionine beta-lyase (CBL; Beta-cystathionase; Cysteine lyase) BRADO3525 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 146341919 Nonpathogen flaF flagellar biosynthesis regulatory protein FlaF BRADO5054 7 COG5442 FlaF, Flagellar biosynthesis regulator FlaF Cell motility and secretion 146340688 Common - Serine protease BRADO3739 218 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146339448 Common fixJ response regulator FixJ BRADO2434 225 COG4566 TtrR, Response regulator Signal transduction mechanisms 146337232 Nonpathogen - conserved hypothetical protein; Putative Acetyltransferase, GNAT family BRADO0058 9 COG0456 RimI, Acetyltransferases General function prediction only 146339831 Common - putative Transcriptional regulatory protein, TetR family BRADO2832 62 COG1309 AcrR, Transcriptional regulator Transcription 146337576 Common proB gamma-glutamyl kinase BRADO0431 191 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 146338760 Common hypA hydrogenase expression/formation protein HypA BRADO1694 98 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 146341047 Common - putative Hydrolase, alpha/beta fold family BRADO4118 90 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146339575 Common - putative glutathione S-transferase BRADO2566 96 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146343271 Common etfA Electron transfer flavoprotein alpha-subunit (Alpha-ETF) (Electron transfer flavoprotein large subunit) (ETFLS) BRADO6491 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 146342262 Common - conserved hypothetical protein (superfamily of ARM repeat); LRV protein FeS4 cluster in N-terminus BRADO5416 13 None None None 146342710 Common - putative bifunctional protein with a transcriptional regulator AraC/XylS family domain and a Class I glutamine amidotransferase-like domain BRADO5877 130 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146343557 Nonpathogen - hypothetical protein BRADO6794 1 None None None 146343482 Common - hypothetical protein BRADO6714 20 COG3575 COG3575, Uncharacterized protein conserved in bacteria Function unknown 146342833 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6012 3 None None None 146339294 Common - putative ABC transporter permease protein BRADO2270 132 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146338217 Nonpathogen - hypothetical protein BRADO1116 3 None None None 146341947 Common - conserved hypothetical protein; putative Methyl-accepting chemotaxis protein BRADO5083 58 COG5280 COG5280, Phage-related minor tail protein Function unknown 146341632 Common - putative ATPase of the MinD/MRP superfamily (mrp-like)(ATP/GTP-binding protein) BRADO4735 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 146338108 Common - putative oligopeptide transport protein (ABC superfamily, membrane) BRADO1004 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 146343803 Nonpathogen - putative Exopolysaccharide biosynthesis protein BRADO7052 1 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 146337480 Common - putative Glucose/sorbosone dehydrogenase BRADO0326 70 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 146338143 Nonpathogen - hypothetical protein; putative signal peptide BRADO1040 1 None None None 146338899 Nonpathogen - hypothetical protein BRADO1839 2 None None None 146340957 Common - tRNA (uracil-5-)-methyltransferase Gid BRADO4028 79 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 146338050 Common - hypothetical protein BRADO0945 8 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146339609 Common - hypothetical protein BRADO2601 73 COG4196 COG4196, Uncharacterized protein conserved in bacteria Function unknown 146339852 Nonpathogen - hypothetical protein BRADO2854 3 None None None 146342917 Common - hypothetical protein BRADO6098 24 None None None 146339929 Nonpathogen - hypothetical protein BRADO2933 1 None None None 146342667 Nonpathogen - hypothetical protein BRADO5834 2 None None None 146343616 Nonpathogen - hypothetical protein BRADO6854 2 None None None 146340532 Nonpathogen - hypothetical protein BRADO3575 1 None None None 146338952 Common - hypothetical protein BRADO1895 60 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 146340439 Nonpathogen - hypothetical protein BRADO3479 5 None None None 146343042 Common - hypothetical protein BRADO6232 7 None None None 146337715 Common - conserved hypothetical protein; putative SAM-dependent methyltransferase BRADO0584 75 None None None 146339269 Common - putative malonic semialdehyde oxidative decarboxylase BRADO2243 219 COG3962 COG3962, Acetolactate synthase Amino acid transport and metabolism 146339498 Common - Putative gluconolactonase BRADO2487 83 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146343285 Common crtB Phytoene synthase BRADO6506 104 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 146340143 Common - hypothetical protein BRADO3158 18 COG4420 COG4420, Predicted membrane protein Function unknown 146343710 Nonpathogen - hypothetical protein BRADO6956 1 None None None 146339149 Common - putative hydantoinase A BRADO2107 107 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146343730 Common - conserved hypothetical protein; putative OmpA-like transmembrane domains BRADO6977 132 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146337257 Common - putative helicase-exonuclease type V protein family, addA subunit BRADO0084 207 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 146341902 Nonpathogen fliL flagellar basal body-associated protein FliL BRADO5036 11 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 146343341 Common - hypothetical protein BRADO6567 17 None None None 146337790 Common - hypothetical protein BRADO0669 126 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 146337941 Nonpathogen - hypothetical protein BRADO0831 1 None None None 146338072 Common - putative Shikimate dehydrogenase BRADO0968 95 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 146341662 Common - putative transcriptional regulatory protein, LysR family; putative peroxide resistance protein PerR BRADO4767 166 COG0583 LysR, Transcriptional regulator Transcription 146338973 Common tonB Energy transducer TonB, C-terminal region BRADO1918 5 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 146340086 Common - putative H(+)/Cl(-) exchange transporter BRADO3095 164 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 146341166 Common - conserved hypothetical protein; putative Polyphosphate kinase domain BRADO4238 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 146341840 Common - putative transposase BRADO4969 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146341531 Common - conserved hypothetical protein; putative secreted protein BRADO4629 9 None None None 146342064 Common gmhA Phosphoheptose isomerase (Sedoheptulose 7-phosphate isomerase) BRADO5204 124 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 146338588 Common - conserved hypothetical protein; putative Shikimate kinase BRADO1514 2 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 146338549 Common - hypothetical protein BRADO1469 22 COG5400 COG5400, Uncharacterized protein conserved in bacteria Function unknown 146343026 Common - putative N-formylglutamate amidohydrolase BRADO6214 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 146338027 Common - putative acyl-CoA dehydrogenase BRADO0920 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146337308 Common pheS phenylalanyl-tRNA synthetase subunit alpha BRADO0139 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 146342059 Common - putative polysaccharide biosynthesis protein (capD-like) BRADO5199 142 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146338727 Common cbbS Ribulose bisphosphate carboxylase small chain (RuBisCO small subunit) BRADO1660 29 COG4451 RbcS, Ribulose bisphosphate carboxylase small subunit Energy production and conversion 146339818 Common - Putative Amidohydrolase family protein; putative hippurate hydrolase (Benzoylglycine amidohydrolase) BRADO2819 167 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 146341314 Common - putative sugar ABC transporter, periplasmic binding protein BRADO4396 25 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146338212 Common - conserved hypothetical protein; putative biopolymer transport exbB protein; putative membrane protein BRADO1111 28 None None None 146337292 Common - Putative TRAP-type C4-dicarboxylate transport system, small permease component (dctQ subunit) BRADO0119 67 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 146342660 Common kdpD sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation BRADO5827 221 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 146342208 Common - putative Molybdenum transport system permease protein modB; putative exported protein BRADO5360 166 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146340636 Common - putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like); putative signal peptide. BRADO3684 98 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146340702 Nonpathogen - hypothetical protein BRADO3753 1 None None None 146341732 Common - putative histone-like nucleoid-structuring protein H-NS family BRADO4837 25 COG2916 Hns, DNA-binding protein H-NS General function prediction only 146341701 Common - putative glutathione S-transferase BRADO4806 10 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146340551 Common - hypothetical protein BRADO3595 21 COG3945 COG3945, Uncharacterized conserved protein Function unknown 146343651 Common - Putative branched-chain amino acid ABC transporter, ATP-binding prtein BRADO6893 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146342211 Common - putative PhnE protein, phosphonate ABC transporter, putative membrane protein BRADO5363 92 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 146341552 Common exbD biopolymer transport protein ExbD; uptake of enterobactin, tonB-dependent uptake of B colicins BRADO4650 115 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 146339793 Common - conserved hypothetical protein; putative Appr-1-p processing enzyme family protein BRADO2794 115 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 146339611 Common - hypothetical protein BRADO2603 94 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 146340816 Common - conserved hypothetical protein; putative methyl-accepting chemotaxis protein BRADO3877 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339140 Nonpathogen - hypothetical protein BRADO2094 1 None None None 146338612 Common - Putative ABC transporter (permease protein) BRADO1540 209 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146337301 Common - putative Glutathione S-transferase family protein BRADO0130 50 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146341164 Common - hypothetical protein BRADO4236 91 COG1434 COG1434, Uncharacterized conserved protein Function unknown 146343568 Common - conserved hypothetical protein; putative branched-chain amino acid ABC transporter, substrate-binding protein BRADO6806 129 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146341848 Common fdhD formate dehydrogenase accessory protein BRADO4978 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 146343451 Common - putative two-component transcriptional regulator, LuxR family BRADO6680 204 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146339993 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2998 3 None None None 146342400 Nonpathogen - hypothetical protein BRADO5558 9 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146338377 Common - hypothetical protein; putative helicase BRADO1287 24 None None None 146341525 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO4622 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146343319 Nonpathogen - hypothetical protein BRADO6544 1 None None None 146338057 Common - hypothetical protein BRADO0952 13 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146340405 Common - hypothetical protein BRADO3438 113 COG1801 COG1801, Uncharacterized conserved protein Function unknown 146338772 Common - hypothetical protein BRADO1706 53 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 146337203 Nonpathogen - hypothetical protein BRADO0029 2 None None None 146341249 Common - putative alpha/beta hydrolase; putative prolyl aminopeptidase BRADO4325 166 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146339880 Common - putative iron-sulfur-binding protein, subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase BRADO2882 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146338909 Common - conserved hypothetical protein; putative oxidoreductase BRADO1849 47 None None None 146339368 Common - putative oxidoreductase BRADO2349 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 146338836 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1773 1 None None None 146342838 Nonpathogen - hypothetical protein BRADO6017 2 COG5485 COG5485, Predicted ester cyclase General function prediction only 146342708 Common - putative response regulator with antiterminator output domain; Putative aliphatic amidase regulator (AmiR) BRADO5875 73 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 146342046 Common - putative Acetyltransferase; trimeric LpxA-like enzyme BRADO5186 88 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 146339001 Nonpathogen - hypothetical protein BRADO1950 1 None None None 146343273 Common - putative ATP:cob(I)alamin adenosyltransferase, monofunctional PduO type BRADO6493 129 COG2096 COG2096, Uncharacterized conserved protein Function unknown 146341774 Common - RNA polymerase sigma factor BRADO4891 175 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146337655 Common - putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains BRADO0521 186 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146338644 Common - Putative carbohydrate kinase pfkB family; putative 6-phosphofructokinase BRADO1575 97 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 146339670 Nonpathogen - hypothetical protein BRADO2664 3 None None None 146342339 Nonpathogen - hypothetical protein BRADO5495 1 None None None 146338676 Common - putative alpha/beta hydrolase fold BRADO1608 19 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341478 Common - putative transcriptional regulator, with HTH domain (N-terminal) and a RmlC-like cupin domain (C-terminal) BRADO4571 74 COG1396 HipB, Predicted transcriptional regulators Transcription 146343676 Common - putative short-chain dehydrogenase/reductase (SDR) BRADO6919 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146337899 Common - Putative sensor histidine kinase BRADO0785 141 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146343239 Common - hypothetical protein BRADO6458 5 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 146343086 Common - putative MgtC-magnesium transport family protein BRADO6281 116 COG1285 SapB, Uncharacterized membrane protein Function unknown 146341910 Common dksA DnaK suppressor protein BRADO5045 158 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 146343566 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO6804 149 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146337718 Nonpathogen - conserved hypothetical protein; putative vWFA domain BRADO0587 8 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146337389 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0222 8 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146338366 Nonpathogen - putative gas vesicle synthesis protein, GvpF/L-like BRADO1275 4 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146337780 Nonpathogen - hypothetical protein BRADO0658 3 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 146340183 Common - putative carboxymuconolactone decarboxylase BRADO3199 59 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 146342613 Common - putative multidrug efflux transporter (AcrB family); putative acriflavin resistance protein BRADO5777 171 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146339146 Nonpathogen - hypothetical protein BRADO2103 3 None None None 146338203 Common - Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain BRADO1102 188 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146341321 Common ddpD putative dipeptide ABC transporter, ATP-binding protein BRADO4403 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146341689 Common - putative D-3-phosphoglycerate dehydrogenase BRADO4794 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146341009 Common ilvD dihydroxy-acid dehydratase BRADO4080 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146340430 Nonpathogen - hypothetical protein BRADO3469 16 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 146340720 Nonpathogen - hypothetical protein BRADO3773 1 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 146337890 Common dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase BRADO0775 137 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 146339292 Common livF high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) BRADO2268 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146339774 Common cynS cyanate hydratase BRADO2774 41 COG1513 CynS, Cyanate lyase Inorganic ion transport and metabolism 146342348 Common - putative Fumarate reductase/succinate dehydrogenase flavoprotein BRADO5504 52 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 146339036 Nonpathogen - hypothetical protein; putative signal peptide BRADO1988 1 None None None 146342522 Common - putative multidrug efflux system, outer membrane subunit (efflux pump component) (TolC family) BRADO5684 127 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146341660 Common - putative transketolase, alpha subunit BRADO4764 220 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 146338526 Common - cytochrome P-450 BRADO1445 86 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146339282 Nonpathogen - hypothetical protein BRADO2258 1 None None None 146341834 Common oxlT putative oxalate/formate antiporter BRADO4963 79 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 146338166 Common cysD sulfate adenylyltransferase subunit 2 BRADO1064 143 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 146337973 Common - putative transcriptional regulatory protein domain, LysR family BRADO0865 165 COG0583 LysR, Transcriptional regulator Transcription 146341372 Common - hypothetical protein BRADO4458 21 COG3602 COG3602, Uncharacterized protein conserved in bacteria Function unknown 146337989 Common - putative Hydrolase, alpha/beta fold family BRADO0881 103 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342609 Common - putative ABC transporter, periplasmic substrate-binding protein BRADO5773 59 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 146340686 Common prfC peptide chain release factor RF-3; GTP-binding factor BRADO3737 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 146338390 Nonpathogen - hypothetical protein; putative signal peptide BRADO1302 4 None None None 146340672 Nonpathogen - hypothetical protein BRADO3722 1 None None None 146338060 Common - Putative thioesterase/thiol ester dehydrase-isomerase BRADO0955 32 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146341983 Common - Putative transposase BRADO5119 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146339059 Common - putative transcriptional regulator, MarR family; N-acetyltransferase BRADO2013 69 COG1846 MarR, Transcriptional regulators Transcription 146337761 Common - hypothetical protein BRADO0637 16 None None None 146341758 Nonpathogen - putative cell wall or antigenic protein (fragment); putative signal peptide BRADO4875 1 COG4907 COG4907, Predicted membrane protein Function unknown 146340954 Nonpathogen - hypothetical protein BRADO4025 1 None None None 146341438 Common nadC nicotinate-nucleotide pyrophosphorylase BRADO4529 203 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 146339231 Nonpathogen - hypothetical protein; putative membrane protein BRADO2197 1 None None None 146341867 Common - conserved hypothetical protein; putative DSBA oxidoreductase BRADO4999 83 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 146341019 Common - Conserved hypothetical protein; putative FMN reductase, NADPH-dependent BRADO4090 109 COG0431 COG0431, Predicted flavoprotein General function prediction only 146337985 Common - hypothetical protein BRADO0877 38 COG4338 COG4338, Uncharacterized protein conserved in bacteria Function unknown 146338386 Nonpathogen - putative General secretion pathway protein J BRADO1298 4 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 146340219 Common - conserved hypothetical protein; putative membrane protein; putative signal peptide BRADO3238 4 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 146340773 Common - hypothetical protein BRADO3831 73 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 146337889 Common dapE succinyl-diaminopimelate desuccinylase BRADO0774 208 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146337687 Common - Putative Geranyltranstransferase (Farnesyl-diphosphate synthase) (FPP synthase) BRADO0555 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 146337594 Common - putative Isoquinoline 1-oxidoreductase beta subunit (iorB-like) BRADO0450 97 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146341745 Common - Putative aliphatic amidase expression-regulating protein, amiC BRADO4860 91 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343709 Common - Putative methyl-accepting chemotaxis protein BRADO6955 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146343647 Nonpathogen - hypothetical protein BRADO6889 24 COG4089 COG4089, Predicted membrane protein Function unknown 146340718 Common - hypothetical protein BRADO3770 15 COG2938 COG2938, Uncharacterized conserved protein Function unknown 146342736 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5908 2 None None None 146343761 Common - putative response regulator receiver (CheY-like protein) BRADO7008 222 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146340312 Common - conserved hypothetical protein; putative integral membrane protein TerC family BRADO3335 46 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 146341716 Nonpathogen - hypothetical protein; putative thioesterase BRADO4821 1 COG3319 COG3319, Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases Secondary metabolites biosynthesis, transport, and catabolism 146337769 Common - enoyl-CoA hydratase BRADO0646 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146338454 Nonpathogen - hypothetical protein BRADO1370 2 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 146341554 Common ybiX putative hydroxylase BRADO4652 44 COG3128 PiuC, Uncharacterized iron-regulated protein Function unknown 146337977 Common - putative Permease of the major facilitator superfamily BRADO0869 19 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 146338755 Common hupG Hydrogenase expression/formation protein hupG BRADO1689 14 None None None 146340498 Common sufB cysteine desulfurase activator complex subunit SufB BRADO3540 185 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 146338771 Common - putative transcriptional regulatory protein, GntR family BRADO1705 101 COG1802 GntR, Transcriptional regulators Transcription 146337857 Common - conserved hypothetical protein; putative Pyridoxamine 5'-phosphate oxidase-related, FMN-binding BRADO0739 36 COG0748 HugZ, Putative heme iron utilization protein Inorganic ion transport and metabolism 146338359 Nonpathogen - hypothetical protein BRADO1268 1 None None None 146339064 Common - hypothetical protein BRADO2018 6 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146340170 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3186 7 COG1416 COG1416, Uncharacterized conserved protein Function unknown 146343359 Common rnhA Ribonuclease H (RNase H) BRADO6586 178 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 146337850 Common lepA GTP-binding protein LepA BRADO0731 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 146342061 Common rfaE bifunctional protein RfaE (Involved in ADP-L-glycero-D-manno-heptose synthesis); putative kinase (N-terminal); putative sugar nucleotide transferase (C-terminal) BRADO5201 108 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 146341533 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4631 2 None None None 146337396 Nonpathogen - hypothetical protein BRADO0230 1 None None None 146342201 Common - putative PhnJ protein, phosphonate metabolism BRADO5353 45 COG3627 PhnJ, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 146338399 Common - hypothetical protein; putative signal peptide BRADO1313 18 None None None 146341980 Common - putative FAD-binding monooxygenase; putative 3-(3-hydroxy-phenyl)propionate hydroxylase BRADO5116 115 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339529 Common paaA Phenylacetic acid degradation protein paaA BRADO2519 46 COG3396 COG3396, Uncharacterized conserved protein Function unknown 146340590 Nonpathogen - hypothetical protein BRADO3635 1 None None None 146339536 Common - hypothetical protein BRADO2526 33 None None None 146341391 Common - Conserved hypothetical protein; putative signal peptide; putative porin precursor BRADO4478 14 None None None 146342338 Common - Putative Fumarylacetoacetate hydrolase family protein BRADO5494 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146337820 Common - Conserved hypothetical protein; putative creatinine amidohydrolase (=creatininase) BRADO0701 84 COG1402 COG1402, Uncharacterized protein, putative amidase General function prediction only 146338491 Common - putative ABC transporter (ATP binding subunit) BRADO1409 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146343777 Common - hypothetical protein, putative glycosyl transferase BRADO7024 73 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 146337467 Common - Putative acyl-CoA thioesterase; putative Palmitoyl-CoA hydrolase BRADO0310 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 146342122 Common - High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding protein) BRADO5268 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343144 Common - Putative General secretion pathway protein K, GspK BRADO6342 8 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 146339062 Common - conserved hypothetical protein; putative amidase and SAM domains BRADO2016 107 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 146340739 Common nirA ferredoxin-nitrite reductase BRADO3793 163 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 146341682 Common - putative ABC transport system, periplasmic substrate-binding protein BRADO4787 100 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338330 Nonpathogen - hypothetical protein BRADO1235 9 COG5490 COG5490, Uncharacterized conserved protein Function unknown 146337500 Common - conserved hypothetical protein; putative exported protein; Fas1 domain BRADO0348 69 COG2335 COG2335, Secreted and surface protein containing fasciclin-like repeats Cell envelope biogenesis, outer membrane 146338140 Common ureA Urease gamma subunit (Urea amidohydrolase gamma subunit) BRADO1037 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 146338804 Common - hydroxydechloroatrazine ethylaminohydrolase BRADO1738 171 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 146337759 Common - hypothetical protein BRADO0634 23 COG3673 COG3673, Uncharacterized conserved protein Function unknown 146338438 Common rpoD RNA polymerase sigma factor RpoD BRADO1354 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 146341585 Common - putative chemotaxis protein MotB BRADO4686 102 COG1360 MotB, Flagellar motor protein Cell motility and secretion 146343441 Common - putative methyl-accepting chemotaxis receptor/sensory transducer BRADO6670 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146342912 Common - putative Dienelactone hydrolase family protein BRADO6093 21 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146340462 Nonpathogen - putative 3-dehydroquinate dehydratase type 2 BRADO3502 3 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 146342192 Nonpathogen - hypothetical protein BRADO5343 1 None None None 146338532 Common - hypothetical protein BRADO1451 86 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146341762 Common - Putative Short-chain dehydrogenase/reductase (modular) BRADO4879 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146342276 Common - hypothetical protein BRADO5430 6 None None None 146343600 Common aapJ General L-amino acid-binding periplasmic protein BRADO6838 104 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146338012 Common - Putative Oligopeptide ABC transporter (permease protein) BRADO0905 218 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342819 Nonpathogen - hypothetical protein BRADO5997 2 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 146340713 Common - hypothetical protein BRADO3765 80 COG2928 COG2928, Uncharacterized conserved protein Function unknown 146337506 Nonpathogen - hypothetical protein BRADO0357 2 None None None 146343829 Common - putative Glycosyl transferase, group 1 family protein BRADO7078 134 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146342565 Common - putative cation efflux membrane fusion protein (CusB-like) BRADO5728 138 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146339198 Common - putative RNA methyltransferase BRADO2158 189 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 146339703 Common - hypothetical protein BRADO2700 7 None None None 146342010 Common - putative aminotransferase; DegT/DnrJ/EryC1/StrS family protein BRADO5147 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 146343263 Nonpathogen - hypothetical protein; putative membrane protein BRADO6483 1 None None None 146339584 Common - putative acyl-CoA dehydrogenase BRADO2575 158 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341889 Common - Putative two-component sensor histidine kinase with multiple PAS domains and a CheY-like response regulator receiver domain BRADO5023 224 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146343408 Common hisD histidinol dehydrogenase BRADO6637 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 146343174 Common - hypothetical protein; putative membrane protein; putative protease (Heat shock protein) BRADO6374 188 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 146338900 Nonpathogen - hypothetical protein BRADO1840 2 None None None 146340226 Common - putative two-component system sensor protein BRADO3245 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342199 Common phnL putative phosphonate ABC transporter, ATP-binding component, PhnL protein BRADO5351 249 COG4778 PhnL, ABC-type phosphonate transport system, ATPase component Inorganic ion transport and metabolism 146340131 Common - ABC transporter with duplicated ATPase domains BRADO3146 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 146339215 Common - putative acyl-CoA dehydrogenase BRADO2179 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146343495 Common - putative transcriptional regulator (PadR-like family) BRADO6727 41 COG1695 COG1695, Predicted transcriptional regulators Transcription 146341987 Common - conserved hypothetical protein; putative signal peptide BRADO5123 21 None None None 146339380 Common rbsC high-affinity D-ribose transport protein (ABC superfamily, membrane) BRADO2362 110 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146343096 Common - putative 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) (o-succinylbenzoyl-CoA synthetase) BRADO6291 188 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146343391 Common - putative ABC transporter, periplasmic binding protein BRADO6620 109 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146338682 Common crtD hydroxyneurosporene and rhodopin dehydrogenase BRADO1614 66 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 146341898 Nonpathogen - conserved hypothetical protein with a TPR-like domain; putative signal peptide BRADO5032 10 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 146341592 Common - putative ABC multidrug transporter, fused ATPase and permease domains BRADO4693 249 COG5265 ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components Posttranslational modification, protein turnover, chaperones 146341925 Nonpathogen - conserved hypothetical protein; putative glutathione synthetase ATP-binding domain-like BRADO5060 8 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 146338552 Common - Conserved hypothetical protein; putative Signal transduction histidine kinase BRADO1472 30 COG5385 COG5385, Uncharacterized protein conserved in bacteria Function unknown 146339666 Common - hypothetical protein BRADO2660 127 COG0628 PerM, Predicted permease General function prediction only 146343862 Common amiF formamidase BRADO7112 148 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146340051 Common - putative transposase BRADO3059 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342410 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5569 1 None None None 146343014 Nonpathogen - hypothetical protein; putative exported protein BRADO6199 1 None None None 146342484 Common prmA Ribosomal protein L11 methyltransferase (L11 Mtase) BRADO5644 173 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 146342093 Common - putative Cytochrome b561 family protein BRADO5236 14 COG3658 COG3658, Cytochrome b Energy production and conversion 146337331 Common pmtA phospholipid N-methyltransferase BRADO0162 37 COG3963 COG3963, Phospholipid N-methyltransferase Lipid metabolism 146337746 Common - conserved hypothetical protein; putative exported protein BRADO0619 27 COG4246 COG4246, Uncharacterized protein conserved in bacteria Function unknown 146342715 Common glnA glutamine synthetase I BRADO5882 223 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 146338158 Common - conserved hypothetical protein; putative ErfK/YbiS/YcfS/YnhG precursor BRADO1055 91 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146341881 Nonpathogen - hypothetical protein BRADO5014 6 COG4923 COG4923, Uncharacterized conserved protein Function unknown 146340305 Common - leucyl aminopeptidase BRADO3328 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 146338843 Common - hypothetical protein BRADO1780 17 COG5502 COG5502, Uncharacterized conserved protein Function unknown 146339749 Nonpathogen - hypothetical protein BRADO2749 1 None None None 146339473 Common - putative transcriptional regulatory protein, TetR family BRADO2461 8 None None None 146340203 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3221 3 None None None 146341386 Common smpB SsrA-binding protein BRADO4473 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 146340113 Common - hypothetical protein BRADO3128 18 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 146343414 Nonpathogen - hypothetical protein BRADO6643 1 None None None 146343824 Common - putative Polysaccharide deacetylase BRADO7073 35 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146337548 Common - putative ATPase (yhcM) AFG1 family BRADO0402 102 COG1485 COG1485, Predicted ATPase General function prediction only 146338942 Common fbp Peptidylprolyl isomerase BRADO1884 144 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 146338020 Common - Putative Competence-damaged protein BRADO0913 37 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 146342957 Common - putative transcriptional regulatory protein, LysR family. BRADO6140 148 COG0583 LysR, Transcriptional regulator Transcription 146343003 Common - conserved hypothetical protein; putative transport system, periplasmic component BRADO6188 8 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146338206 Common - hypothetical protein BRADO1105 19 COG5317 COG5317, Uncharacterized protein conserved in bacteria Function unknown 146341878 Common - hypothetical protein BRADO5010 8 None None None 146341228 Nonpathogen - hypothetical protein BRADO4304 1 None None None 146340990 Common - putative oxidoreductase BRADO4061 199 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146338568 Common - Putative ABC transporter (permease protein) BRADO1489 202 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146337926 Nonpathogen - hypothetical protein BRADO0815 1 None None None 146342450 Common - putative D-lactate dehydrogenase (D-lactate ferricytochrome C oxidoreductase) BRADO5609 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146339646 Common - hypothetical protein BRADO2639 34 COG1409 Icc, Predicted phosphohydrolases General function prediction only 146342548 Common thiS thiamine biosynthesis protein ThiS BRADO5710 39 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 146338884 Common cheW Chemotaxis protein cheW BRADO1823 130 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 146342355 Common - putative branched-chain amino acid ABC transporter (permease protein); livM-like protein BRADO5511 152 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146341119 Common - Putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO4190 189 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146341967 Nonpathogen - hypothetical protein BRADO5103 1 None None None 146341000 Common - amidase BRADO4071 218 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146341221 Common - putative acyltransferase (family 3), putative membrane protein BRADO4297 53 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146341217 Nonpathogen - hypothetical protein BRADO4291 1 None None None 146339836 Common - Conserved hypothetical protein; Putative phosphoesterase, MJ0912 type BRADO2837 73 COG0622 COG0622, Predicted phosphoesterase General function prediction only 146341937 Nonpathogen - hypothetical protein BRADO5072 4 None None None 146342320 Common - hypothetical protein BRADO5475 3 None None None 146341605 Nonpathogen - hypothetical protein; putative exported protein BRADO4706 1 None None None 146339517 Common - putative gamma-glutamyltranspeptidase BRADO2507 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 146342364 Common - Putative Peptidase, M20/M25/M40 family BRADO5521 144 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146342166 Nonpathogen - hypothetical protein BRADO5316 2 None None None 146342002 Common cycG Diheme cytochrome c-type BRADO5138 55 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146342556 Common - putative G/U mismatch-specific DNA glycosylase (mug-like) BRADO5719 28 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 146342371 Common leuA 2-isopropylmalate synthase BRADO5528 212 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 146341267 Common groEL chaperonin GroEL BRADO4344 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 146341398 Nonpathogen - hypothetical protein BRADO4488 14 None None None 146340155 Nonpathogen - hypothetical protein BRADO3170 1 COG1724 COG1724, Predicted periplasmic or secreted lipoprotein Cell motility and secretion 146338500 Common - hypothetical protein BRADO1418 88 COG2378 COG2378, Predicted transcriptional regulator Transcription 146337379 Common hisB imidazoleglycerol-phosphate dehydratase BRADO0212 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 146337319 Common - conserved hypothetical protein; putative signal peptide; putative Isoprenylcysteine carboxyl methyltransferase domain BRADO0150 14 COG1755 COG1755, Uncharacterized protein conserved in bacteria Function unknown 146339029 Nonpathogen - hypothetical protein BRADO1978 1 COG5373 COG5373, Predicted membrane protein Function unknown 146338131 Common cspA Cold shock protein, DNA binding BRADO1028 178 COG1278 CspC, Cold shock proteins Transcription 146338502 Common - Aminopeptidase; homologous to antibiotic hydrolase or cocain esterase BRADO1420 66 COG2936 COG2936, Predicted acyl esterases General function prediction only 146338404 Common - dihydrodipicolinate synthase BRADO1318 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 146341728 Common - hypothetical protein BRADO4833 4 None None None 146341073 Common - conserved hypothetical protein; putative signal peptide; putative Caspase-like domain BRADO4144 13 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339819 Nonpathogen - hypothetical protein BRADO2820 2 None None None 146341570 Common ydhJ putative multidrug resistance membrane protein (MFP family) BRADO4671 148 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146343374 Common - conserved hypothetical protein; putative NUDIX hydrolase BRADO6602 18 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146339740 Common - hypothetical protein BRADO2738 9 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 146337370 Common secB preprotein translocase subunit SecB BRADO0203 109 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 146341795 Common - Cobalamin biosynthetic protein (anaerobic pathway of cobalamin biosynthesis, cobD) BRADO4914 146 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 146343883 Common - Putative Cytochrome P450 family protein BRADO7134 42 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146339174 Common - putative GTP cyclohydrolase II, riboflavin biosynthesis BRADO2133 228 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 146338047 Common - putative N-acyl homoserine lactone transcriptional regulator, LuxR-like BRADO0942 45 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 146341486 Common - putative branched-chain amino acid ABC transporter, ATP-binding protein (livF-like) BRADO4579 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146338924 Common - hypothetical protein BRADO1864 10 None None None 146342146 Common - putative TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit) BRADO5295 112 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146338297 Common - putative ionic transporter y4hA BRADO1201 44 COG0387 ChaA, Ca2+/H+ antiporter Inorganic ion transport and metabolism 146339548 Common - putative branched-chain amino acid ABC transporter (substrate-binding protein) BRADO2539 133 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343438 Common - putative methyl-accepting chemotaxis receptor/sensory transducer BRADO6667 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339906 Common - hypothetical protein BRADO2910 12 None None None 146340983 Nonpathogen - hypothetical protein BRADO4054 1 None None None 146342216 Common - putative Metal-dependent hydrolase involved in phosphonate metabolism; PhnM protein BRADO5368 53 COG3454 COG3454, Metal-dependent hydrolase involved in phosphonate metabolism Inorganic ion transport and metabolism 146337870 Common hrpB ATP-dependent helicase BRADO0755 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 146338348 Common - Peroxidase BRADO1256 24 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 146341400 Nonpathogen - hypothetical protein BRADO4490 3 None None None 146340607 Nonpathogen - hypothetical protein BRADO3652 1 None None None 146342125 Nonpathogen - hypothetical protein BRADO5271 1 None None None 146342588 Common - putative response regulator receiver (CheY-like protein) BRADO5751 28 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 146340505 Common - conserved hypothetical protein; putative TfoX N-terminal domain BRADO3547 28 COG3070 TfoX, Regulator of competence-specific genes Transcription 146343203 Nonpathogen - hypothetical protein BRADO6410 1 None None None 146337359 Common parB chromosome partitioning protein BRADO0192 184 COG1475 Spo0J, Predicted transcriptional regulators Transcription 146342220 Common - putative Acetamidase/Formamidase BRADO5372 63 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146342318 Common - Putative ABC transporter (permease protein) BRADO5473 163 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146340665 Nonpathogen - hypothetical protein BRADO3713 1 None None None 146342433 Common - putative 4-hydroxyphenylpyruvate dioxygenase containing a TIM-barrel fold (N-ter) BRADO5592 85 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 146337829 Common - Conserved hypothetical protein; putative inner membrane transport protein BRADO0710 67 None None None 146339075 Common glyQ glycyl-tRNA synthetase subunit alpha BRADO2029 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 146343789 Common - Conserved hypothetical protein; putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO7037 8 COG4627 COG4627, Uncharacterized protein conserved in bacteria Function unknown 146338244 Common - Putative metallophosphoesterase ykuE BRADO1148 92 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 146338460 Common - Cytochrome P450 BRADO1377 65 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146340471 Common - putative ribonuclease E BRADO3511 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 146341679 Common - putative ABC transporter, permease protein BRADO4784 129 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146338260 Common - putative Glutathione S-transferase BRADO1164 44 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146338734 Common oxyR transcriptional regulator of oxidative stress, regulates intracellular hydrogen peroxide (LysR family) BRADO1667 189 COG0583 LysR, Transcriptional regulator Transcription 146340346 Common - conserved hypothetical protein; putative partial CreA protein domain. BRADO3373 57 COG3045 CreA, Uncharacterized protein conserved in bacteria Function unknown 146342891 Common - putative Zn-dependent protease BRADO6071 174 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 146341850 Common - Putative voltage-dependent potassium channel with a cyclic nucleotide-binding domain BRADO4980 132 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146343347 Common - putative ABC-type branched-chain amino acid transport system, periplasmic component BRADO6574 105 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146341527 Nonpathogen - 3-oxoacyl-(Acyl carrier protein) synthase III (fragment) BRADO4624 1 None None None 146341659 Common - putative transketolase, beta-subunit BRADO4763 228 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 146339110 Nonpathogen - hypothetical protein BRADO2064 11 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 146340642 Nonpathogen - conserved hypothetical protein; putative NUDIX hydrolase family protein. BRADO3690 3 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146341599 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4700 6 None None None 146343059 Common - hypothetical protein BRADO6250 24 COG3686 COG3686, Predicted membrane protein Function unknown 146340259 Common purF amidophosphoribosyltransferase BRADO3280 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 146340296 Nonpathogen - hypothetical protein BRADO3319 1 None None None 146341756 Common metC O-acetylhomoserine aminocarboxypropyltransferase BRADO4873 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 146337700 Common - conserved hypothetical protein; putative SAM-dependent methyltransferase BRADO0568 48 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146338040 Common - acyl-CoA synthetase BRADO0933 194 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146338743 Common pstB high-affinity phosphate transport protein (ABC superfamily, atp_bind) BRADO1677 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 146337426 Nonpathogen - hypothetical protein; putative membrane protein BRADO0264 1 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 146339244 Common - putative Peptidylprolyl isomerase BRADO2210 125 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 146339738 Common - Putative methyl-accepting chemotaxis protein BRADO2736 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340844 Common - hypothetical protein BRADO3907 62 COG3496 COG3496, Uncharacterized conserved protein Function unknown 146343746 Common - Methyl-accepting chemotaxis protein (MCP) BRADO6993 120 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340240 Common lipB lipoyltransferase BRADO3259 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 146338310 Common potG putrescine transport protein (ABC superfamily, atp_bind) BRADO1215 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146338261 Common - conserved hypothetical protein with a DGPF domain BRADO1165 40 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 146339318 Common - Putative uncharacterized iron-regulated membrane protein BRADO2297 47 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 146337240 Common - putative D-isomer specific 2-hydroxyacid dehydrogenases family protein; putative Glyoxylate reductase (Glycolate reductase) BRADO0066 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 146340358 Nonpathogen - hypothetical protein BRADO3386 4 None None None 146338694 Common hmuO heme oxygenase BRADO1626 23 COG5398 COG5398, Heme oxygenase Inorganic ion transport and metabolism 146339765 Common - Putative HlyD family secretion protein BRADO2765 125 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146338106 Common - putative oligopeptide transport protein (ABC superfamily, peri_bind) BRADO1002 175 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 146340759 Common - putative permease protein of sugar ABC transporter BRADO3816 170 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146343780 Common rfbC dTDP-4,deoxyrhamnose 3,5 epimerase BRADO7027 167 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 146338540 Common - putative two-component transcriptional regulator, LuxR family BRADO1460 173 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146339785 Common - Conserved hypothetical protein; Putative membrane protein; putative Acyltransferase family protein BRADO2786 18 None None None 146342325 Common - Putative Quinoprotein ethanol dehydrogenase BRADO5480 71 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146339311 Common - putative response regulator receiver (CheY-like protein) BRADO2287 21 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 146343596 Common - RNA polymerase sigma factor BRADO6834 169 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146340351 Common - putative Secretion HlyD family protein, putative Gram-negative bacterial RTX secretion protein D. BRADO3378 113 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146341175 Common - putative ABC transporter (ATP-binding protein) BRADO4248 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 146342596 Common - putative amino-acid ABC transporter, periplasmic substrate-binding protein BRADO5759 128 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340146 Common - putative oxidoreductase subunit protein BRADO3161 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146340783 Nonpathogen - hypothetical protein BRADO3841 1 None None None 146340329 Common rnd Ribonuclease D (RNase D) BRADO3356 123 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 146343625 Common - Putative ABC transporter, ATP-binding protein BRADO6864 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 146337517 Nonpathogen - hypothetical protein BRADO0368 1 None None None 146343831 Common - hypothetical protein BRADO7080 41 COG4949 COG4949, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 146343549 Common - Putative polysaccharide deacetylase BRADO6786 52 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146339016 Common - hypothetical protein BRADO1965 44 COG3816 COG3816, Uncharacterized protein conserved in bacteria Function unknown 146337380 Nonpathogen - hypothetical protein BRADO0213 4 None None None 146342756 Common - putative Transcriptional regulator, AraC/XylS family BRADO5930 31 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146338467 Common - NAD(P)-dependent oxidoreductase (putative Inositol 2-dehydrogenase). BRADO1384 183 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146339750 Nonpathogen - hypothetical protein BRADO2750 5 None None None 146342822 Common - conserved hypothetical protein; putative signal peptide BRADO6001 7 None None None 146341052 Nonpathogen - hypothetical protein BRADO4123 2 None None None 146339687 Common mutA Methylmalonyl-CoA mutase small subunit (MCM-beta) BRADO2682 107 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 146340804 Common - putative gluconolactonase BRADO3863 54 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146337933 Common - Methyl-accepting chemotaxis protein (MCP) BRADO0823 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341522 Common - putative sugar ABC transporter, permease protein BRADO4619 189 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146342858 Common hisS histidyl-tRNA synthetase BRADO6038 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146337276 Common - Putative caiB/baiF CoA-transferase family protein; Putative Formyl-CoA transferase BRADO0103 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146341998 Common - putative transcriptional regulator BRADO5134 25 COG1522 Lrp, Transcriptional regulators Transcription 146339362 Common ligC 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase BRADO2343 181 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146338426 Nonpathogen - hypothetical protein BRADO1341 1 None None None 146338195 Common - Putative oligopeptide-binding protein appA precursor (ABC superfamily) BRADO1093 209 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146339047 Common - putative chromosome segregation SMC protein BRADO2000 177 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 146339541 Common - putative amidotransferase BRADO2532 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146339616 Common - hypothetical protein BRADO2608 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 146340529 Common hom homoserine dehydrogenase BRADO3572 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 146341994 Common - Non-heme haloperoxidase BRADO5130 81 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146337915 Common - hypothetical protein BRADO0803 3 None None None 146338290 Common - putative death on curing protein (fragment) BRADO1194 21 COG3654 Doc, Prophage maintenance system killer protein General function prediction only 146343478 Common - conserved hypothetical protein; putative invasion protein B BRADO6710 13 COG5342 COG5342, Invasion protein B, involved in pathogenesis General function prediction only 146343507 Common - ATP-dependent DNA ligase BRADO6739 100 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 146339932 Common - hypothetical protein BRADO2936 15 COG4391 COG4391, Uncharacterized protein conserved in bacteria Function unknown 146338963 Common glpR glycerol-3-phosphate regulon repressor, transcriptional regulator protein, DeoR family. BRADO1907 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 146338138 Common - putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO1035 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343050 Common - Putative N-hydroxyarylamine O-acetyltransferase BRADO6241 44 COG2162 NhoA, Arylamine N-acetyltransferase Secondary metabolites biosynthesis, transport, and catabolism 146342232 Common fixC FixC protein; flavoprotein-ubiquinone oxidoreductase BRADO5384 134 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 146342877 Common pgsA Putative CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase BRADO6057 203 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 146338953 Common - putative Transcriptional regulatory protein, TetR family BRADO1896 78 COG1309 AcrR, Transcriptional regulator Transcription 146341150 Common metC O-acetylhomoserine aminocarboxypropyltransferase BRADO4221 208 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 146343246 Common - putative cation transport protein chaC-related BRADO6466 44 COG3703 ChaC, Uncharacterized protein involved in cation transport Inorganic ion transport and metabolism 146337342 Common - putative deoxyribonucleotide triphosphate pyrophosphatase BRADO0174 227 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 146342583 Common - hypothetical protein BRADO5746 58 COG3825 COG3825, Uncharacterized protein conserved in bacteria Function unknown 146339620 Common - GTP cyclohydrolase I BRADO2613 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 146343533 Common - putative cation-driven multidrug efflux pump; putative membrane protein BRADO6768 168 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 146342302 Nonpathogen - hypothetical protein BRADO5457 1 None None None 146340887 Common - putative Beta-hexosaminidase BRADO3953 179 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 146343879 Common - conserved hypothetical protein; putative signal peptide BRADO7130 11 COG4402 COG4402, Uncharacterized protein conserved in bacteria Function unknown 146342028 Common - putative sugar-nucleotide epimerase/dehydratase BRADO5166 229 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146343657 Common - Two-component transcriptional regulator, CheY-LuxR families (two-component signal transduction system) BRADO6899 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146339003 Nonpathogen - hypothetical protein BRADO1952 3 None None None 146342013 Common - putative O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein BRADO5150 149 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 146343640 Common - putative acyl-CoA dehydrogenase BRADO6880 159 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341136 Nonpathogen - hypothetical protein BRADO4207 1 None None None 146339887 Common lepB Signal peptidase I (SPase I) (Leader peptidase I) BRADO2889 204 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 146339898 Common - conserved hypothetical protein; putative transposase domain BRADO2900 34 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 146339912 Common - amidase BRADO2916 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146340727 Common - 2-octaprenyl-6-methoxyphenyl hydroxylase BRADO3780 126 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146340000 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3005 3 None None None 146342469 Common - putative ABC-2 type transporter (permease protein) BRADO5628 151 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146343757 Nonpathogen flbT flagellar biosynthesis repressor FlbT BRADO7004 14 COG5443 FlbT, Flagellar biosynthesis regulator FlbT Cell motility and secretion 146343805 Common - putative S-adenosyl-L-methionine (SAM)-methyltransferases BRADO7054 30 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146337635 Common - putative branched-chain amino-acid ABC transporter, periplasmic binding protein BRADO0500 92 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339259 Common - conserved hypothetical protein; putative signal peptide BRADO2230 11 None None None 146338715 Nonpathogen - hypothetical protein BRADO1648 7 None None None 146341907 Common - putative hydratase/decarboxylase; putative 4-oxalocrotonate decarboxylase BRADO5041 63 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 146338794 Common - Putative component of multidrug efflux system (RND family) BRADO1728 143 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146342401 Common ilvC ketol-acid reductoisomerase BRADO5559 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 146343360 Common thrB homoserine kinase BRADO6587 64 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 146337782 Common - Hypothetical protein; putative aminopeptidase; putative exported protein BRADO0660 7 COG2234 Iap, Predicted aminopeptidases General function prediction only 146343113 Common - Putative Cytochrome b561 family protein BRADO6310 43 COG3658 COG3658, Cytochrome b Energy production and conversion 146339680 Common - Conserved hypothetical protein; putative membrane protein; putative Transglycosylase-associated protein BRADO2675 10 COG2261 COG2261, Predicted membrane protein Function unknown 146343815 Common - putative sugar transferase protein BRADO7064 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 146342112 Common purU formyltetrahydrofolate deformylase BRADO5257 221 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 146338307 Common - NAD binding site:FAD dependent oxidoreductase BRADO1212 95 COG0579 COG0579, Predicted dehydrogenase General function prediction only 146343741 Common - dihydroxy-acid dehydratase BRADO6988 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146342749 Common - Putative transposase BRADO5921 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146338063 Common - TrapT family, dctM subunit, C4-dicarboxylate transport precursor BRADO0958 128 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146342935 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6116 3 None None None 146337880 Common recR recombination protein RecR BRADO0765 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 146343588 Nonpathogen - hypothetical protein; putative signal peptide BRADO6826 1 None None None 146339825 Nonpathogen - cytochrome b(561) (fragment) BRADO2826 1 COG3038 CybB, Cytochrome B561 Energy production and conversion 146339119 Common - putative UTP--glucose-1-phosphate thymidylyltransferase BRADO2073 66 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 146338481 Common - Choline dehydrogenase BRADO1398 90 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146342682 Common - NAD-dependent aldehyde dehydrogenase BRADO5849 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146338231 Common - Putative glutathione S-transferase BRADO1131 91 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146341785 Common cobI Precorrin-2 C(20)-methyltransferase BRADO4904 132 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 146343165 Common fabI enoyl-[acyl-carrier-protein] reductase (NADH) BRADO6363 227 COG0623 FabI, Enoyl- acyl-carrier-protein 146339754 Common ilvD dihydroxyacid dehydratase (DAD) BRADO2754 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146343064 Common - Putative High affinity nickel transporter BRADO6256 37 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 146340944 Common - conserved hypothetical protein; putative ATP-binding protein BRADO4015 28 COG3910 COG3910, Predicted ATPase General function prediction only 146340927 Nonpathogen - hypothetical protein BRADO3998 3 None None None 146338476 Common rbsC ABC transporter, Membrane component (putative high-affinity D-ribose transport protein) BRADO1393 141 COG4158 COG4158, Predicted ABC-type sugar transport system, permease component General function prediction only 146342742 Nonpathogen - Putative periplasmic nitrate reductase NapE BRADO5914 2 COG4459 NapE, Periplasmic nitrate reductase system, NapE component Energy production and conversion 146337556 Common - hypothetical protein BRADO0410 7 None None None 146337804 Common - Putative gentisate 1,2-dioxygenase with a Cupin, RmlC-type domain BRADO0683 29 COG3435 COG3435, Gentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146342645 Common - putative bifunctional: 6-phosphogluconolactonase (N-terminal) (Pgl); D-gluconate kinase (C-terminal) BRADO5812 139 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 146339551 Common - ABC transporter ATP-binding protein BRADO2542 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337431 Common - hypothetical protein BRADO0269 32 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 146339220 Common gmd GDP-D-mannose dehydratase, NAD(P)-binding, colanic acid synthesis BRADO2185 224 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 146337178 Common recF recombination protein F BRADO0003 135 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 146342903 Common - Putative cytochrome p450-like enzyme BRADO6084 75 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146341240 Nonpathogen - hypothetical protein BRADO4316 7 None None None 146338704 Nonpathogen - putative regulator with a cobalamin (vitamin B12)-binding domain, AerR-like BRADO1636 5 None None None 146337861 Nonpathogen - hypothetical protein BRADO0746 2 None None None 146339081 Common - hypothetical protein BRADO2035 43 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 146340964 Common secD preprotein translocase subunit SecD BRADO4035 221 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 146337310 Common pheT phenylalanyl-tRNA synthetase subunit beta BRADO0141 223 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 146342898 Common mutL DNA mismatch repair protein BRADO6079 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 146343030 Common - hypothetical protein BRADO6218 34 None None None 146338221 Common cbbA fructose-1,6-bisphosphate aldolase BRADO1120 175 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 146339481 Common - putative catechol 1,2-dioxygenase BRADO2470 48 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 146341857 Nonpathogen - hypothetical protein BRADO4989 2 None None None 146339854 Common - Putative Carbon monoxide dehydrogenase, coxG accessory protein BRADO2856 42 COG3427 COG3427, Uncharacterized conserved protein Function unknown 146343039 Common - putative Sensor histidine kinase; putative HWE histidine kinase family protein BRADO6228 36 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146337611 Common - hypothetical protein; putative secreted protein BRADO0473 4 None None None 146337752 Common - putative dipeptide transport system permease protein BRADO0627 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342265 Common fdxN Ferredoxin-like protein (in nif region) BRADO5419 102 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 146339206 Common solA N-methyltryptophan oxidase BRADO2168 52 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146339961 Common - putative transposase BRADO2965 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146338945 Common - hypothetical protein BRADO1888 14 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146339692 Common - Conserved hypothetical protein; Putative ATPase BRADO2688 80 COG0433 COG0433, Predicted ATPase General function prediction only 146339954 Common - hypothetical protein BRADO2958 12 None None None 146343307 Nonpathogen - hypothetical protein BRADO6531 3 None None None 146337420 Common - conserved hypothetical protein; putative transcriptional regulator with a cAMP-binding domain-like, Crp/Fnr family BRADO0258 28 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 161353771 Common trpS tryptophanyl-tRNA synthetase BRADO0033 229 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146341368 Common - putative glutathione S-transferase BRADO4454 68 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146337811 Common - Conserved hypothetical protein; putative glutathione synthetase ATP-binding domain-like BRADO0690 14 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 146337249 Common ubiB Ubiquinone biosynthesis protein ubiB BRADO0076 182 COG0661 AarF, Predicted unusual protein kinase General function prediction only 146339503 Common - ribokinase BRADO2492 172 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 146342422 Common - Putative chromate transport protein BRADO5581 58 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 146337935 Common cheA Chemotaxis protein cheA BRADO0825 150 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 146339491 Nonpathogen - conserved hypothetical protein; putative signal peptide; putative transmembrane component BRADO2480 11 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146339265 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2236 2 None None None 146342229 Common - putative molybdenum ABC transporter, ATP-binding protein BRADO5381 19 COG1618 COG1618, Predicted nucleotide kinase Nucleotide transport and metabolism 146339184 Nonpathogen - hypothetical protein BRADO2144 1 None None None 146340539 Common - conserved hypothetical protein; putative carboxymuconolactone decarboxylase (CMD) family protein. BRADO3582 83 COG2128 COG2128, Uncharacterized conserved protein Function unknown 146342230 Common mop Molybdenum-pterin binding protein (Mop); putative molybdenum transport component BRADO5382 68 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 146341790 Common - hypothetical protein BRADO4909 20 COG5469 COG5469, Predicted metal-binding protein Function unknown 146338523 Common - acyl-CoA dehydrogenase BRADO1442 158 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146337538 Common ccmA heme ABC transporter (heme exporter protein A), ATP-binding protein (cytochrome c-type biogenesis) BRADO0392 156 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 146342403 Common - Putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO5561 87 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146340947 Common - conserved hypothetical protein; putative signal peptide BRADO4018 4 None None None 146341839 Common - putative two-component sensor histidine kinase with a ATP-binding domain (C-term) BRADO4968 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342082 Nonpathogen - hypothetical protein BRADO5223 1 None None None 146343214 Common - putative short-chain reductase/dehydrogenase; putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) BRADO6424 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342134 Common - hypothetical protein BRADO5281 27 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 146341187 Common - hypothetical protein BRADO4260 23 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 146338852 Common - putative Hydantoin racemase HyuA BRADO1791 42 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 146342429 Common feoB ferrous iron transport protein B BRADO5588 156 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 146337259 Common ligC ATP-dependent DNA ligase BRADO0086 74 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 146338086 Common - Putative long-chain-fatty-acid--CoA ligase; putative long-chain acyl-CoA synthetase; pimeloyl-CoA ligase pimA BRADO0982 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146338066 Nonpathogen - hypothetical protein BRADO0961 1 None None None 146340578 Common - hypothetical protein; HNH endonuclease domain. BRADO3623 16 COG1403 McrA, Restriction endonuclease Defense mechanisms 146339077 Common glyS glycyl-tRNA synthetase subunit beta BRADO2031 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 146340084 Common - putative short-chain dehydrogenase BRADO3093 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342413 Common - Putative Serine protease do-like precursor BRADO5572 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146343512 Common acaP carbonic anhydrase (Carbonate dehydratase) BRADO6744 52 COG3338 Cah, Carbonic anhydrase Inorganic ion transport and metabolism 146340481 Common - putative transcriptional regulatory protein, GntR family, with putative PLP-dependent aminotransferase domain BRADO3523 193 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 146337799 Common - Putative methyl-accepting chemotaxis protein BRADO0678 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337717 Nonpathogen - hypothetical protein BRADO0586 7 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146337677 Common - putative transcriptional regulator, Fur family; zinc uptake regulator ZUR BRADO0544 98 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 146342380 Nonpathogen - hypothetical protein BRADO5537 2 None None None 146343104 Common - hypothetical protein BRADO6300 14 None None None 146338092 Common - Arylesterase (Aryl-ester hydrolase) BRADO0988 140 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341512 Common dhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone binding subunit dhaK BRADO4609 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 146343301 Nonpathogen - putative Flp/Fap pilin component BRADO6524 1 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 146339577 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2568 1 None None None 146337263 Common trpA tryptophan synthase subunit alpha BRADO0090 215 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 146338913 Common ligB Protocatechuate dioxygenase BRADO1853 26 COG3384 COG3384, Uncharacterized conserved protein Function unknown 146342989 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO6172 140 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146340853 Common - conserved hypothetical protein; putative Lipid A disaccharide synthase (N-terminal); putative membrane protein BRADO3916 19 COG3952 COG3952, Predicted membrane protein Function unknown 146340647 Common - putative transcriptional regulatory protein, LysR family BRADO3695 92 COG0583 LysR, Transcriptional regulator Transcription 146343205 Nonpathogen - hypothetical protein; putative signal peptide BRADO6413 1 None None None 146337643 Common - putative polyhydroxy-alkanoate/butyrate(PHA/PHB) depolymerase BRADO0509 36 COG3509 LpqC, Poly(3-hydroxybutyrate) depolymerase Secondary metabolites biosynthesis, transport, and catabolism 146343630 Common - acyl-CoA synthetase BRADO6869 217 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146341342 Common ribH riboflavin synthase subunit beta BRADO4426 209 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 146342717 Common - putative C-terminal domain of alpha subunit of Glutamate synthase; putative formyl-methanofuran dehydrogenase BRADO5884 55 COG0070 GltB, Glutamate synthase domain 3 Amino acid transport and metabolism 146343152 Common - conserved hypothetical protein; putative Sel-1 like repeats domain. BRADO6350 79 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146343684 Common - RTX toxin-activating lysine-acyltransferase (type I secretion system) BRADO6927 16 COG2994 HlyC, ACP:hemolysin acyltransferase (hemolysin-activating protein) Posttranslational modification, protein turnover, chaperones 146340627 Common - hypothetical protein BRADO3675 33 COG4645 COG4645, Uncharacterized protein conserved in bacteria Function unknown 146338059 Common - putative transcriptional regulator, LysR family BRADO0954 151 COG0583 LysR, Transcriptional regulator Transcription 146339867 Common - conserved hypothetical protein; putative Single hybrid motif BRADO2869 150 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146343500 Common - putative permeases of the drug/metabolite transporter (DMT) superfamily BRADO6732 178 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 146341296 Nonpathogen - hypothetical protein BRADO4377 24 None None None 146338223 Common pgk phosphoglycerate kinase BRADO1122 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 146338990 Nonpathogen - hypothetical protein BRADO1938 1 None None None 146337568 Common nudH dinucleoside polyphosphate hydrolase BRADO0423 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 146343072 Common hss homospermidine synthase BRADO6264 25 COG5310 COG5310, Homospermidine synthase Secondary metabolites biosynthesis, transport, and catabolism 146339789 Common - conserved hypothetical protein; putative membrane protein; putative LtrA domain (Low temperature requirement A protein ) BRADO2790 20 COG4292 COG4292, Predicted membrane protein Function unknown 146341704 Common - putative branched-chain amino acid ABC transporter, periplasmic binding protein BRADO4809 63 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146337939 Common - hypothetical protein BRADO0829 11 COG4278 COG4278, Uncharacterized conserved protein Function unknown 146340525 Common - hypothetical protein BRADO3567 12 COG3686 COG3686, Predicted membrane protein Function unknown 146340834 Common - putative Alcohol dehydrogenase (acceptor) BRADO3897 60 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146338592 Common - putative periplasmic copper binding protein BRADO1519 23 COG5569 COG5569, Uncharacterized conserved protein Function unknown 146341033 Common secG preprotein translocase subunit SecG BRADO4104 42 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 146340064 Common rplP 50S ribosomal protein L16 BRADO3073 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 146341587 Nonpathogen - putative two-component system sensor protein with Hpt domain BRADO4688 2 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 146337303 Common - conserved hypothetical protein, putative alpha/beta hydrolase superfamily BRADO0132 43 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 146339392 Common - putative phosphodiesterase-nucleotide pyrophosphatase BRADO2377 11 COG3379 COG3379, Uncharacterized conserved protein Function unknown 146342513 Common - putative transcriptional regulator, TetR family BRADO5675 123 COG1309 AcrR, Transcriptional regulator Transcription 146338542 Common - Quinoprotein ethanol dehydrogenase BRADO1462 87 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146341402 Common - putative 2-nitropropane dioxygenase BRADO4492 101 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 146341375 Nonpathogen - hypothetical protein BRADO4461 3 None None None 146337460 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase BRADO0303 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 146339524 Common - putative epoxide hydrolase BRADO2514 162 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342676 Common - hypothetical protein; putative helicase (fragment) BRADO5843 23 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 146339943 Nonpathogen - hypothetical protein BRADO2947 1 None None None 146339057 Common - hypothetical protein BRADO2011 85 COG2321 COG2321, Predicted metalloprotease General function prediction only 146341753 Common - putative transcriptional regulator, TetR family BRADO4869 30 COG1309 AcrR, Transcriptional regulator Transcription 146341523 Common - putative sugar ABC Transporter, periplasmic substrate-binding protein BRADO4620 59 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146343762 Common - putative response regulator receiver (CheY-like protein) BRADO7009 20 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146339160 Common - hypothetical protein BRADO2118 23 None None None 146340233 Common - Ubiquinone/menaquinone biosynthesis methyltransferase BRADO3252 194 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146343889 Common - Conserved hypothetical protein; putative polysaccharide export protein BRADO7140 104 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 146343828 Common - putative lipopolysaccharide biosynthesis protein BRADO7077 90 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 146337290 Common - putative 3'-5' exonuclease family protein BRADO0117 114 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 146342213 Common - putative PhnD protein, phosphonate ABC transporter, putative exported protein BRADO5365 96 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 146337825 Nonpathogen - conserved hypothetical protein; putative Metalloprotease inhibitor/calysin; putative signal peptide BRADO0706 7 None None None 146339726 Common - thymidine phosphorylase BRADO2724 121 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 146338190 Common - Putative membrane-bound lytic murein transglycosylase, putative signal peptide BRADO1088 101 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146337183 Common - Putative transcriptional regulatory protein,luxR family BRADO0008 28 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146339973 Common - conserved hypothetical protein; putative signal peptide BRADO2978 3 None None None 146338987 Common - hypothetical protein BRADO1935 98 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146341410 Common - putative protease (CAAX family); putative membrane protein BRADO4500 25 COG1266 COG1266, Predicted metal-dependent membrane protease General function prediction only 146338258 Common - putative transcriptional regulatory protein, related to MarR family BRADO1162 125 COG1733 COG1733, Predicted transcriptional regulators Transcription 146338419 Nonpathogen - putative repressor (ATPase domain and DNA-binding domain) BRADO1334 2 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 146339435 Nonpathogen - hypothetical protein BRADO2421 1 None None None 146341416 Common DprA DNA processing chain A (DprA/Smf) BRADO4506 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 146342081 Common - conserved hypothetical protein; putative signal peptide; TPR domain protein BRADO5222 63 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 146341185 Nonpathogen - conserved hypothetical protein; putative permease of the major falicitator superfamily BRADO4258 6 None None None 146339626 Common - putative ABC transporter permease protein BRADO2619 218 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342634 Common - hypothetical protein BRADO5799 10 None None None 146340543 Common efp elongation factor P BRADO3586 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 146338861 Common - putative oligopeptide transport protein (ABC superfamily, atp_bind) BRADO1800 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146341622 Nonpathogen - hypothetical protein BRADO4724 1 None None None 146342980 Common dht dihydropyrimidinase BRADO6163 202 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 146337694 Common phbA acetyl-CoA acetyltransferase BRADO0562 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146343563 Nonpathogen - hypothetical protein; putative transporter (fragment) BRADO6801 1 None None None 146339418 Common - putative thiol-disulfide oxidoreductase BRADO2404 81 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 146337910 Nonpathogen - hypothetical protein BRADO0798 1 None None None 146343188 Common - hypothetical protein BRADO6391 7 None None None 146342099 Common - hypothetical protein; putative SAM-dependent methyltransferase domain BRADO5242 11 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146339568 Common - putative methyl-accepting chemotaxis protein BRADO2559 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339684 Common mutB methylmalonyl-CoA mutase BRADO2679 110 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 146341783 Common cobK Precorrin-6A reductase BRADO4902 75 COG2099 CobK, Precorrin-6x reductase Coenzyme metabolism 146338356 Common - putative phycocyanobilin:ferredoxin oxidoreductase, PcyA-like BRADO1265 11 None None None 146341426 Nonpathogen - hypothetical protein BRADO4516 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 146341721 Common - putative glycosyltransferase (group 1) BRADO4826 82 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146342781 Common glmM phosphoglucosamine mutase BRADO5957 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 146343848 Common - hypothetical protein BRADO7098 37 None None None 146341832 Common - hypothetical protein BRADO4961 27 COG4705 COG4705, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 146338536 Common - Cytochrome c BRADO1456 57 COG3474 COG3474, Cytochrome c2 Energy production and conversion 146340824 Nonpathogen - hypothetical protein BRADO3886 1 None None None 146337924 Nonpathogen - hypothetical protein BRADO0813 1 None None None 146338375 Common - hypothetical protein BRADO1285 19 None None None 146340668 Nonpathogen - hypothetical protein BRADO3718 2 None None None 146340879 Nonpathogen - hypothetical protein BRADO3945 2 None None None 146341482 Common - putative transcriptional regulator, LysR family BRADO4575 167 COG0583 LysR, Transcriptional regulator Transcription 146341590 Common pssA phosphatidylserine synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase) BRADO4691 147 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 146342045 Nonpathogen - hypothetical protein; putative membrane protein BRADO5185 1 COG4485 COG4485, Predicted membrane protein Function unknown 146342297 Nonpathogen - hypothetical protein BRADO5452 6 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 146339094 Common - dihydroorotase BRADO2048 210 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 146342445 Common - conserved hypothetical protein; putative membrane protein; DoxD-like family protein BRADO5604 48 COG2259 COG2259, Predicted membrane protein Function unknown 146341619 Nonpathogen - hypothetical protein BRADO4721 2 None None None 146343330 Common - hypothetical protein BRADO6556 106 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146340495 Nonpathogen - hypothetical protein BRADO3537 1 None None None 146341976 Common - conserved hypothetical protein; putative signal peptide BRADO5112 14 None None None 146338841 Common norQ NorD protein required for nitric oxide reductase (Nor) activity (putative Chaperone, ATPase) BRADO1778 79 COG0714 COG0714, MoxR-like ATPases General function prediction only 146343354 Common - conserved hypothetical protein; putative signal peptide BRADO6581 66 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146341610 Nonpathogen - hypothetical protein BRADO4711 1 None None None 146339208 Nonpathogen - hypothetical protein BRADO2170 2 None None None 146338341 Nonpathogen - hypothetical protein BRADO1249 2 None None None 146341825 Common - putative transcriptional regulatory protein, GntR family BRADO4954 128 COG1802 GntR, Transcriptional regulators Transcription 146340303 Common - putative permease BRADO3326 109 COG0795 COG0795, Predicted permeases General function prediction only 146339780 Nonpathogen - hypothetical protein BRADO2780 1 None None None 146342242 Common - putative transcriptional regulatory protein (protein cheY homolog) BRADO5396 87 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146337393 Common - conserved hypothetical protein; putative signal peptide; putative outer membrane protein BRADO0226 161 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 146339411 Common cyoA cytochrome o ubiquinol oxidase, subunit II BRADO2396 119 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 146341320 Common dppF putative dipeptide ABC transporter, ATP-binding protein BRADO4402 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146337683 Common - putative sodium/hydrogen antiporter (exchanger); putative membrane protein BRADO0551 110 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 146343300 Common - putative transcriptional regulatory protein, HTH DNA binding domain. BRADO6523 51 COG5616 COG5616, Predicted integral membrane protein Function unknown 146340860 Nonpathogen - hypothetical protein BRADO3924 1 None None None 146343837 Common - NAD-dependent deacetylase BRADO7087 151 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 146341299 Nonpathogen - hypothetical protein BRADO4380 21 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 146337459 Common - O-sialoglycoprotein endopeptidase BRADO0302 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 146337597 Common - putative oxidoreductase protein BRADO0453 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146340429 Nonpathogen - hypothetical protein BRADO3468 2 None None None 146342153 Common - Putative ABC transporter (ATP-binding protein) BRADO5303 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 146338917 Common - putative enzyme with cysteine hydrolase domain BRADO1857 53 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146338824 Common serA D-3-phosphoglycerate dehydrogenase BRADO1760 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146342788 Common - putative two-component sensor histidine kinase with a histidine kinase (N-term) and an ATP-binding region (C-ter) BRADO5965 77 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146341144 Common - putative diguanylate cyclase (GGDEF) BRADO4215 176 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146342282 Common nifN nitrogenase reductase-associated ferredoxin, nifN BRADO5436 48 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146339353 Common tspO Tryptophan-rich sensory protein BRADO2334 62 COG3476 COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) Signal transduction mechanisms 146341179 Common - hypothetical protein BRADO4252 14 None None None 146339715 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2713 4 None None None 146342252 Common - putative hemoglobin protein (Truncated hemoglobin) BRADO5406 66 COG2346 COG2346, Truncated hemoglobins General function prediction only 146342501 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase BRADO5662 217 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 146343891 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO7142 3 None None None 146338080 Common - Putative high-affinity branched-chain amino acid transport system permease protein livM (ABC superfamily, membrane) BRADO0976 152 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146342505 Common - conserved hypothetical protein; putative exported protein BRADO5666 20 COG5462 COG5462, Predicted secreted (periplasmic) protein Function unknown 146342762 Common lolD lipoprotein-releasing system (ABC transporter), ATP-binding protein lolD BRADO5936 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 146340755 Nonpathogen - hypothetical protein BRADO3812 3 None None None 146341895 Common flgB flagellar basal body rod protein FlgB BRADO5029 47 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 146337251 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase BRADO0078 178 COG0756 Dut, dUTPase Nucleotide transport and metabolism 146343667 Common - aminotransferase BRADO6909 188 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 146340393 Nonpathogen - hypothetical protein BRADO3426 2 None None None 146342573 Common - putative transglycosylase BRADO5736 99 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146341597 Nonpathogen - hypothetical protein BRADO4698 1 None None None 146338319 Common atoA acetyl-CoA:acetoacetyl-CoA transferase, beta subunit BRADO1224 101 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 146342173 Common - arginase BRADO5323 90 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 146337218 Common - putative transporter with CBS domain; putative Magnesium and cobalt efflux protein corC BRADO0044 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 146338285 Common - hypothetical protein BRADO1189 61 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 146342766 Common - Putative transport protein; putative permease of the drug/metabolite transporter (DMT) superfamily BRADO5940 184 COG2962 RarD, Predicted permeases General function prediction only 146341562 Nonpathogen - hypothetical protein BRADO4663 1 None None None 146337449 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0289 1 None None None 146337472 Nonpathogen - hypothetical protein BRADO0317 1 None None None 146343703 Nonpathogen - hypothetical protein BRADO6948 2 None None None 146343519 Common - putative Long-chain-fatty-acid--CoA ligase (fragment) BRADO6752 175 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 146341349 Nonpathogen - hypothetical protein BRADO4433 2 None None None 146340448 Common - conserved hypothetical protein; putative signal peptide BRADO3488 98 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146338696 Common BrbphP Bacteriophytochrome BRADO1628 33 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 146342805 Common - hypothetical protein BRADO5982 47 COG5267 COG5267, Uncharacterized protein conserved in bacteria Function unknown 146343397 Nonpathogen - hypothetical protein BRADO6626 4 None None None 146338677 Common - putative Alpha/beta hydrolase, putative protoporphyrin IX magnesium chelatase bchO-like. BRADO1609 110 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146340364 Nonpathogen - hypothetical protein BRADO3392 1 None None None 146340571 Nonpathogen - hypothetical protein BRADO3615 10 None None None 146341302 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4383 11 None None None 146339354 Common ligR transcriptional regulator of protochatechuate degradation (LysR family) BRADO2335 192 COG0583 LysR, Transcriptional regulator Transcription 146340537 Common - Putative membrane-bound lytic transglycosylase precursor protein, putative signal peptide BRADO3580 101 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146338723 Common cbbP Phosphoribulokinase (Phosphopentokinase) (PRKase) (PRK) BRADO1656 51 COG3954 PrkB, Phosphoribulokinase Energy production and conversion 146337561 Common atpH F0F1 ATP synthase subunit delta BRADO0416 183 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 146340778 Nonpathogen - hypothetical protein BRADO3836 1 COG5373 COG5373, Predicted membrane protein Function unknown 146341333 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III BRADO4417 211 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 146338036 Common - acetyl-CoA acetyltransferase BRADO0929 186 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146340397 Common - putative haloacid dehalogenase-like hydrolase family protein BRADO3430 168 COG0546 Gph, Predicted phosphatases General function prediction only 146340872 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3937 3 None None None 146342417 Common folA dihydrofolate reductase BRADO5576 142 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 146337405 Nonpathogen - hypothetical protein BRADO0240 2 COG5373 COG5373, Predicted membrane protein Function unknown 146341059 Common fabZ (3R)-hydroxymyristol acyl carrier protein dehydratase BRADO4130 186 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 146337239 Common - conserved hypothetical protein; putative signal peptide BRADO0065 53 COG3807 COG3807, Uncharacterized protein conserved in bacteria Function unknown 146343484 Common - putative Thioredoxin (H-type,TRX-H) BRADO6716 148 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 146339995 Common - conserved hypothetical protein; putative outer-membrane immunogenic protein precursor; putative secreted protein BRADO3000 24 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146339142 Nonpathogen - hypothetical protein BRADO2097 1 None None None 146337792 Common - Putative ATP-dependent DNA helicase BRADO0671 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 146338629 Common - hypothetical protein BRADO1557 7 None None None 146339430 Common - conserved hypothetical protein with 2 CBS domains BRADO2416 158 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 146342963 Common gltK glutamate/aspartate ABC transporter (permease protein) BRADO6146 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 146343589 Nonpathogen - hypothetical protein; putative signal peptide BRADO6827 1 None None None 146343369 Common - putative transporter TrapT family, fused dctQ-M subunits, C4-dicarboxylate transport BRADO6597 132 COG4666 COG4666, TRAP-type uncharacterized transport system, fused permease components General function prediction only 146340384 Common - putative NADPH-dependent FMN reductase BRADO3417 46 COG0431 COG0431, Predicted flavoprotein General function prediction only 146343265 Common lysA diaminopimelate decarboxylase BRADO6485 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 146337230 Common rpsO 30S ribosomal protein S15 BRADO0056 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 146342489 Common recN DNA repair protein RecN (Recombination protein N) BRADO5650 195 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 146337324 Nonpathogen - hypothetical protein BRADO0155 1 None None None 146339982 Common - hypothetical protein BRADO2987 15 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146338219 Common - putative Beta-lactamase BRADO1118 104 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146340695 Common engA GTP-binding protein EngA BRADO3746 232 COG1160 COG1160, Predicted GTPases General function prediction only 146339592 Common - hypothetical protein BRADO2584 90 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146340437 Common - putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain; signal peptide. BRADO3477 213 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146337862 Common - conserved hypothetical protein; putative signal peptide BRADO0747 9 None None None 146340709 Nonpathogen - hypothetical protein BRADO3761 1 None None None 146343521 Common - putative sugar ABC transporter, ATP-binding protein BRADO6756 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146338483 Common - D-glutamate deacylase BRADO1400 49 COG3653 COG3653, N-acyl-D-aspartate/D-glutamate deacylase Secondary metabolites biosynthesis, transport, and catabolism 146342919 Common - putative Zn-dependent protease, pmbA-like protein BRADO6100 160 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 146342480 Common - putative Fatty-acid desaturase, transmenbrane protein BRADO5640 70 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 146342062 Common rfaD ADP-L-glycero-D-mannoheptose-6-epimerase BRADO5202 224 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146342712 Common soxD Sarcosine oxidase, delta subunit BRADO5879 23 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 146339462 Common - hypothetical protein BRADO2448 31 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146342455 Common - hypothetical protein BRADO5614 8 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146343221 Common - glutamate carboxypeptidase BRADO6431 148 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146340337 Nonpathogen - hypothetical protein BRADO3364 5 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146338129 Common - conserved hypothetical protein; putative signal peptide BRADO1026 14 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 146343130 Common - putative oxidoreductase; putative FAD/NAD(P)-binding domain BRADO6328 91 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146339496 Common - putative dehydrogenase BRADO2485 162 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 146337879 Common - conserved hypothetical protein; putative YbaB family protein BRADO0764 185 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 146343576 Common - amidase BRADO6814 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146337578 Common - putative permease of the drug/metabolite transporter (DMT) superfamily BRADO0433 109 COG2962 RarD, Predicted permeases General function prediction only 146337221 Common - putative peptidase M20 family; putative carboxypeptidase G2 (Glutamate carboxypeptidase) BRADO0047 112 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146341192 Nonpathogen - Hypothetical protein; putative PIN domain (fragment) BRADO4266 1 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 146342774 Common serC phosphoserine aminotransferase BRADO5949 63 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 146341045 Common - hypothetical protein BRADO4116 6 None None None 146341017 Common - conserved hypothetical protein; putative signal peptide; putative Septum formation initiator domain BRADO4088 27 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 146342554 Nonpathogen - hypothetical protein; putative exported protein BRADO5717 1 None None None 146338586 Common - PUTATIVE ACETYLTRANSFERASE PROTEIN BRADO1511 18 COG3153 COG3153, Predicted acetyltransferase General function prediction only 146341634 Common - putative oxidoreductase; putative 3-hydroxyisobutyrate dehydrogenase BRADO4737 189 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146340926 Common coaD phosphopantetheine adenylyltransferase BRADO3997 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 146338214 Common - putative cyclopropane-fatty-acyl-phospholipid synthase BRADO1113 138 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 146338931 Common - Putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (cobalamin-independent methionine synthase) BRADO1871 142 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 146337482 Common panE 2-dehydropantoate 2-reductase BRADO0328 79 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 146340161 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3176 1 None None None 146339137 Common - hypothetical protein BRADO2091 28 COG4312 COG4312, Uncharacterized protein conserved in bacteria Function unknown 146340387 Common gabT 4-aminobutyrate aminotransferase ((S)-3-amino-2-methylpropionate transaminase) BRADO3420 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 146342821 Common prs ribose-phosphate pyrophosphokinase BRADO6000 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 146342686 Common - putative branched-chain amino acid ABC transporter (permease protein) BRADO5853 147 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146342057 Common - putative Glycosyl transferase, group 1 BRADO5197 181 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146341330 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO4412 134 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146339675 Common - RNA polymerase sigma factor BRADO2670 170 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146337196 Common - putative Aspartate/ornithine carbamoyltransferase family protein BRADO0022 220 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 146340905 Common - putative Methionyl-tRNA formyltransferase BRADO3974 192 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 146340553 Nonpathogen - hypothetical protein BRADO3597 3 None None None 146341572 Common - hypothetical protein BRADO4673 16 COG4318 COG4318, Uncharacterized protein conserved in bacteria Function unknown 146338008 Common - putative adenylate/guanylyl cyclase with a CHASE2 domain BRADO0901 88 COG4252 COG4252, Predicted transmembrane sensor domain Signal transduction mechanisms 146343717 Common - hypothetical protein BRADO6963 24 COG3813 COG3813, Uncharacterized protein conserved in bacteria Function unknown 146343016 Common - Toxin secretion ABC transporter (ATP-binding and membrane protein); hlyB-like protein BRADO6201 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 146343223 Common - hypothetical protein BRADO6433 36 COG4091 COG4091, Predicted homoserine dehydrogenase Amino acid transport and metabolism 146341447 Nonpathogen - hypothetical protein BRADO4538 10 None None None 146340722 Common - putative acid-CoA ligase BRADO3775 45 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146342041 Common - putative O-antigene/LPS export system permease protein BRADO5180 73 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 146343384 Common glgC glucose-1-phosphate adenylyltransferase BRADO6613 157 COG0448 GlgC, ADP-glucose pyrophosphorylase Carbohydrate transport and metabolism 146337414 Common - conserved hypothetical protein; putative signal peptide, putative TRAP-type uncharacterized transport system BRADO0252 34 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146338421 Common - putative member of the Thioesterase superfamily BRADO1336 33 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146337484 Common - putative transposase; putative insertion element BRADO0330 90 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 146338634 Common - aldehyde dehydrogenase; NAD-linked BRADO1563 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146338278 Common - hypothetical protein BRADO1182 10 None None None 146338078 Common - Putative ABC-type branched-chain amino acid transporter, periplasmic binding protein BRADO0974 107 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338903 Common - putative ATPase, AAA family BRADO1843 125 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 146339938 Common - conserved hypothetical protein; putative exported protein BRADO2942 9 None None None 146340620 Common gloA Lactoylglutathione lyase (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D-lactoylglutathione methylglyoxal lyase) BRADO3665 122 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146341904 Common flgG flagellar basal body rod protein FlgG BRADO5038 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 146343216 Common - putative metallo-beta-lactamase superfamily protein BRADO6426 81 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146343176 Nonpathogen - hypothetical protein BRADO6377 1 None None None 146339663 Common - putative N-carbamoyl-D-amino acid hydrolase BRADO2656 202 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146342141 Common - hypothetical protein BRADO5288 30 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 146339966 Common - hypothetical protein BRADO2970 4 None None None 146341664 Common - putative gluconolactonase BRADO4769 126 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146339808 Nonpathogen - hypothetical protein BRADO2809 1 None None None 146340700 Nonpathogen - hypothetical protein; putative signal peptide BRADO3751 1 None None None 146341110 Common nuoE NADH dehydrogenase subunit E BRADO4181 155 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 146340371 Common - putative sensor histidine kinase with two PAS and a response regulator receiver domains BRADO3399 212 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146341206 Common - putative luciferase-like monooxygenase BRADO4280 84 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146340274 Nonpathogen - hypothetical protein; putative signal sequence BRADO3295 2 None None None 146343167 Nonpathogen - hypothetical protein BRADO6365 1 None None None 146339931 Common - putative Salicylate hydroxylase (Salicylate 1-monooxygenase) BRADO2935 80 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339330 Common - putative ABC transporter, ATP-binding protein BRADO2309 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146340175 Nonpathogen - hypothetical protein BRADO3191 20 None None None 146340599 Common - hypothetical protein BRADO3644 4 None None None 146342319 Common - putative ABC transporter (ATP-binding protein) BRADO5474 246 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146340690 Common - conserved hypothetical protein; putative signal peptide BRADO3741 10 None None None 146340707 Nonpathogen - hypothetical protein BRADO3759 3 None None None 146337437 Common folD bifunctional: 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase BRADO0277 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 146341698 Common - conserved hypothetical protein; putative hydrolase (HAD superfamily) BRADO4803 94 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 146341978 Common - putative transcriptional regulator, putative GntR family BRADO5114 119 COG1802 GntR, Transcriptional regulators Transcription 146342307 Common - conserved hypothetical protein; putative exported protein BRADO5462 19 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343727 Common - hypothetical protein BRADO6974 5 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146339795 Common - putative L-allo-threonine aldolase BRADO2796 120 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 146343028 Common - Putative methyl-accepting chemotaxis protein BRADO6216 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341846 Common fdsB Putative formate dehydrogenase beta subunit BRADO4976 164 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 146339267 Common - hypothetical protein; putative signal peptide BRADO2238 4 None None None 146340814 Nonpathogen - hypothetical protein BRADO3874 1 None None None 146343241 Common metX homoserine O-acetyltransferase BRADO6461 133 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 146341168 Common - conserved hypothetical protein; putative GcrA-like regulator BRADO4241 33 COG5352 COG5352, Uncharacterized protein conserved in bacteria Function unknown 146343674 Common - Putative methyl-accepting chemotaxis receptor/sensory transducer BRADO6917 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337723 Common - hypothetical protein BRADO0592 75 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339873 Common - conserved hypothetical protein (DUF72) BRADO2875 88 COG1801 COG1801, Uncharacterized conserved protein Function unknown 146340421 Common - putative Zn-ribbon-containing protein involved in phosphonate metabolism, PhnA-like protein. BRADO3457 106 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 146338411 Common - Putative Permease of the major facilitator superfamily BRADO1326 208 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343737 Common - putative Staphylococcus nuclease-like protein (SNase-like) BRADO6984 44 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 146338235 Common - Metallo-phosphoesterase BRADO1139 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 146342947 Nonpathogen - hypothetical protein BRADO6129 1 None None None 146338120 Common - putative secretory protein kinase, cpaF-like gene BRADO1016 161 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 146339083 Common - putative MFS permease BRADO2037 132 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343257 Nonpathogen - hypothetical protein BRADO6477 1 None None None 146342940 Nonpathogen - hypothetical protein BRADO6121 1 COG5373 COG5373, Predicted membrane protein Function unknown 146337189 Common - putative Pirin family protein BRADO0014 141 COG1741 COG1741, Pirin-related protein General function prediction only 146338410 Common carB carbamoyl phosphate synthase large subunit BRADO1325 233 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 146337734 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha BRADO0606 195 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 146342866 Common - bifunctional enzyme with isomerase/decarboxylase activity BRADO6046 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146338519 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1438 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 146341921 Common - Putative flagellin protein, C-terminus BRADO5056 11 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 146340347 Nonpathogen - hypothetical protein BRADO3374 1 None None None 146340765 Common - hypothetical protein BRADO3823 24 COG3889 COG3889, Predicted solute binding protein General function prediction only 146340354 Nonpathogen - hypothetical protein; putative signal peptide BRADO3382 1 None None None 146338815 Common - putative cytidine and deoxycytidylate deaminase zinc-binding protein BRADO1749 184 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 146340890 Common - putative two-component system histidine kinase BRADO3956 200 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146339876 Common - conserved hypothetical protein; putative membrane protein; putative glycosyl transferase BRADO2878 38 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146339640 Common - putative protein export membrane protein BRADO2633 42 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 146340899 Common - putative secretion ATP-binding protein (ABC-type transporter family); putative toxin/protease secretion system BRADO3966 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 146343021 Nonpathogen - putative conjugual transfert protein, traC BRADO6207 9 None None None 146342032 Common - putative transketolase, C-terminal section (TK) BRADO5170 229 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 146342359 Common - putative NADH-dependent flavin oxidoreductase; putative N-methylproline demethylase (Stachydrine utilization protein stcD) BRADO5515 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 146342436 Common - Putative branched-chain amino acid ABC transporter (permease protein) BRADO5595 164 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146340735 Nonpathogen - hypothetical protein BRADO3789 8 COG5330 COG5330, Uncharacterized protein conserved in bacteria Function unknown 146339829 Common purB adenylosuccinate lyase BRADO2830 236 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 146341004 Common - Putative Branched-chain amino acid ABC transporter (permease protein) BRADO4075 143 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146337709 Common - hypothetical protein BRADO0578 25 None None None 146342731 Nonpathogen fliH flagellar assembly protein H BRADO5901 9 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 146340244 Nonpathogen - hypothetical protein BRADO3264 1 None None None 146341673 Common - hypothetical protein BRADO4778 21 None None None 146339106 Common - putative methyl-accepting chemotaxis receptor/sensory transducer; putative signal peptide BRADO2060 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146340830 Common - hypothetical protein BRADO3893 37 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 146338703 Nonpathogen ppsR1 transcriptional regulatory protein, HTH Fis-type family BRADO1635 9 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146339120 Nonpathogen - conserved hypothetical protein; putative glycosyltransferase BRADO2074 11 COG4641 COG4641, Uncharacterized protein conserved in bacteria Function unknown 146338004 Common - putative Multidrug efflux transporter; membrane protein BRADO0897 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 146343148 Common gspG General secretion pathway protein G BRADO6346 74 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 146337685 Common - conserved hypothetical protein; putative caspase (peptidase) BRADO0553 14 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146340191 Nonpathogen - hypothetical protein BRADO3207 3 None None None 146341807 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4927 7 None None None 146337665 Common - putative sulfonate ABC transporter, periplasmic binding protein (ssuA/ycbO-like) BRADO0531 99 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146340117 Common - putative methylmalonyl-CoA decarboxylase alpha chain BRADO3132 145 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 146342178 Nonpathogen cycB Cytochrome c-552 precursor (Cytochrome c552) BRADO5328 5 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146341942 Common - conserved hypothetical protein; putative signal peptide BRADO5078 24 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 146342606 Common - putative transcriptional regulator, AraC/XylS family BRADO5770 59 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146340260 Common - putative Colicin V production protein, cvpA-like (dedE protein) (Pur regulon 18 kDa protein) BRADO3281 29 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 146341965 Common - putative Two-component transcriptional regulator BRADO5101 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146338514 Common - hypothetical protein BRADO1432 44 COG3768 COG3768, Predicted membrane protein Function unknown 146341264 Common - putative cytidine/deoxycytidylate deaminase BRADO4340 207 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 146339445 Common - putative permease of the major facilitator superfamily BRADO2431 52 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146337499 Nonpathogen - hypothetical protein BRADO0346 1 None None None 146342189 Common - putative LexA repressor BRADO5340 12 COG2932 COG2932, Predicted transcriptional regulator Transcription 146343559 Common - putative ABC transporter, ATP-binding protein BRADO6796 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146342938 Common - putative ABC transporter (fused ATP-binding and permease components) BRADO6119 249 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 146337367 Common - putative maf-like protein BRADO0200 180 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 146338902 Common - putative amine oxidase BRADO1842 24 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 146341950 Common - putative ABC transporter (permease protein) BRADO5086 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 146339599 Common - hypothetical protein BRADO2591 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146342495 Common ddlB D-alanine-D-alanine ligase, affects cell division BRADO5656 211 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 146339833 Nonpathogen - hypothetical protein BRADO2834 2 COG4676 COG4676, Uncharacterized protein conserved in bacteria Function unknown 146341355 Common - manganese transport protein MntH BRADO4439 108 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 146338245 Common ybgC Thioesterase superfamily:4-hydroxybenzoyl-CoA thioesterase BRADO1149 101 COG0824 FcbC, Predicted thioesterase General function prediction only 146337833 Nonpathogen - Hypothetical protein; putative membrane protein BRADO0714 3 None None None 146337394 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase 1 (fabG1) BRADO0228 231 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 146342929 Common - hypothetical protein BRADO6110 23 COG3416 COG3416, Uncharacterized protein conserved in bacteria Function unknown 146338878 Common chvE Multiple sugar-binding periplasmic receptor chvE precursor BRADO1817 89 COG4213 XylF, ABC-type xylose transport system, periplasmic component Carbohydrate transport and metabolism 146343250 Common ftsE Cell division ABC transpoter (ATP-binding protein) BRADO6470 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 146338284 Common - hypothetical protein BRADO1188 38 COG3750 COG3750, Uncharacterized protein conserved in bacteria Function unknown 146343639 Common - putative glutathione S-transferase (GST) BRADO6879 85 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146337356 Common leuS leucyl-tRNA synthetase BRADO0189 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146338154 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1051 3 None None None 146337299 Common - Conserved hypothetical protein; putative NAD dependent epimerase/dehydratase family protein BRADO0128 67 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146342770 Common ftsH Cell division protein ftsH homolog (ATP-dependent zinc-metallo protease) BRADO5944 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 146340267 Common - exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI) BRADO3288 196 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 146340376 Common - putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase) BRADO3405 92 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146340775 Common - acyl-CoA synthetase BRADO3833 221 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146343811 Nonpathogen - hypothetical protein BRADO7060 1 None None None 146339527 Nonpathogen - hypothetical protein BRADO2517 5 COG5490 COG5490, Uncharacterized conserved protein Function unknown 146340976 Common tatA twin argininte translocase protein A BRADO4047 93 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 146342148 Common - putative TRAP-type C4-dicarboxylate transport system, large permease component BRADO5297 126 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146343121 Common - putative TonB-dependent receptor protein BRADO6318 100 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 146341022 Common - putative alcohol dehydrogenase-like protein containing a GroES-like domain (Nter) and a NAD(P)-binding Rossmann-fold domain(C-ter) BRADO4093 105 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146342551 Common thiC thiamine biosynthesis protein ThiC BRADO5713 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 146337903 Nonpathogen - Thiamine-phosphate pyrophosphorylase (TMP pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) (fragment) BRADO0791 1 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 146343044 Common - Putative ABC transporter (substrate-binding protein); putative branched-chain amino acid transporter BRADO6234 88 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339020 Common - hypothetical protein BRADO1969 9 None None None 146343089 Common - Putative cytochrome c family protein BRADO6284 56 COG2863 COG2863, Cytochrome c553 Energy production and conversion 146341969 Common - putative transport transmembrane protein (aquaporin-like) BRADO5105 17 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 146343172 Nonpathogen - hypothetical protein BRADO6372 1 None None None 146338563 Nonpathogen - hypothetical protein; putative signal peptide BRADO1484 1 None None None 146337411 Common - hypothetical protein BRADO0247 27 None None None 146337744 Common cobS Aerobic cobaltochelatase cobS subunit (cobalamin biosynthesis) BRADO0617 71 COG0714 COG0714, MoxR-like ATPases General function prediction only 146343509 Common matE1 cation efflux pump, DNA-damage-inducible protein; putative BRADO6741 75 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 146341311 Common - putative sugar ABC transporter (ATP-binding protein), with TOBE domain (C-terminal) BRADO4393 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146341680 Common - putative ABC transporter, permease protein BRADO4785 139 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146340459 Common - putative two-component sensor histidine kinase BRADO3499 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 146343497 Common - hypothetical protein BRADO6729 9 COG3904 COG3904, Predicted periplasmic protein Function unknown 146339650 Common - Putative Uracil-DNA glycosylase BRADO2643 155 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 146341383 Common - conserved hypothetical protein with DNA-binding domain (DUF88) BRADO4470 62 COG1432 COG1432, Uncharacterized conserved protein Function unknown 146341466 Common - hypothetical protein BRADO4558 35 COG3753 COG3753, Uncharacterized protein conserved in bacteria Function unknown 146337465 Common glnK1 regulatory protein (P-II 2) for nitrogen assimilation, regulates GlnL (NRII), GlnE (ATase), and AmtB (ammonium transporter) BRADO0308 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 146337990 Common - Conserved hypothetical protein; Putative metal-dependent hydrolase BRADO0882 24 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 146342332 Common gfa glutathione-dependent formaldehyde-activating enzyme BRADO5487 16 COG3791 COG3791, Uncharacterized conserved protein Function unknown 146340150 Common guaB inositol-5-monophosphate dehydrogenase BRADO3165 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 146340007 Nonpathogen - hypothetical protein BRADO3013 1 None None None 146340101 Common - acetyl-CoA acetyltransferase BRADO3110 155 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146343759 Common - hypothetical protein; putative His Kinase A domain BRADO7006 107 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146343775 Common - putative glycosyltransferase, group 1 BRADO7022 84 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146343535 Common metZ O-succinylhomoserine sulfhydrylase BRADO6770 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 146337901 Nonpathogen - hypothetical protein BRADO0788 1 None None None 146340737 Common - putative two-component response regulator:antitermination factor NasT BRADO3791 100 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 146338713 Nonpathogen - conserved hypothetical protein; putative photosynthetic complex assembly protein. BRADO1646 9 None None None 146339914 Common - conserved hypothetical protein; putative MlrC C-terminus domain BRADO2918 32 COG5476 COG5476, Uncharacterized conserved protein Function unknown 146339066 Common - putative electron transfer flavoprotein dehydrogenases BRADO2020 107 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 146341448 Common nitA Aliphatic nitrilase BRADO4539 61 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146339018 Nonpathogen - hypothetical protein BRADO1967 5 None None None 146342051 Common - putative DegT/DnrJ/EryC1/StrS aminotransferase family protein BRADO5191 198 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 146342754 Nonpathogen - hypothetical protein BRADO5928 4 None None None 146337980 Common - Putative ABC transporter (permease protein) BRADO0872 199 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146337964 Common - hypothetical protein BRADO0856 7 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 146340221 Common - putative arsenite permease BRADO3240 159 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 146339659 Common - Putative ATP-binding component of ABC transporter BRADO2652 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337667 Common - putative sulfonate ABC transporter, ATP binding protein (ssuB/tauB/ycbE-like) BRADO0533 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146341395 Nonpathogen - hypothetical protein; Trans-splicing factor Raa3 (fragment) BRADO4483 1 None None None 146339217 Common - hypothetical protein; putative WD40 repeat BRADO2181 18 COG2319 COG2319, FOG: WD40 repeat General function prediction only 146339364 Common - hypothetical protein BRADO2345 34 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146337180 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase BRADO0005 208 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 146341811 Common - hypothetical protein BRADO4935 2 None None None 146339249 Common - putative glycosyl transferase BRADO2218 63 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146343853 Nonpathogen - hypothetical protein; putative signal peptide BRADO7103 1 None None None 146340715 Common - putative esterase/lipase/outer membrane autotransporter BRADO3767 54 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 146339159 Common - hypothetical protein BRADO2117 18 COG2122 COG2122, Uncharacterized conserved protein Function unknown 146340520 Common - putative ABC transporter (permease protein); putative membrane protein BRADO3562 147 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146338332 Common - Conjugal transfer protein traD BRADO1240 14 None None None 146342882 Nonpathogen - hypothetical protein BRADO6062 1 None None None 146343068 Common - putative ornithine decarboxylase BRADO6260 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 146343001 Nonpathogen - hypothetical protein; putative signal peptide BRADO6185 1 None None None 146341223 Nonpathogen - hypothetical protein BRADO4299 1 None None None 146342560 Nonpathogen - hypothetical protein BRADO5723 14 COG5552 COG5552, Uncharacterized conserved protein Function unknown 146342701 Common - hypothetical protein BRADO5868 75 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 146337521 Common rplS 50S ribosomal protein L19 BRADO0375 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 146341470 Common - putative transcriptional regulator, XRE family BRADO4562 41 COG2944 COG2944, Predicted transcriptional regulator Transcription 146337928 Common hisC histidinol-phosphate aminotransferase BRADO0818 232 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 146340201 Nonpathogen - hypothetical protein BRADO3218 1 None None None 146339038 Common trpE(G) anthranilate synthase BRADO1991 230 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 146337809 Common - putative sodium:dicarboxylate symporter BRADO0688 160 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 146339226 Common - Putative general secretion pathway protein D; putative signal peptide BRADO2191 128 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 146341232 Common - Putative sensor histidine kinase with a PAS/PAC domain BRADO4308 217 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146341050 Nonpathogen - hypothetical protein BRADO4121 3 None None None 146342536 Common - conserved hypothetical protein; putative ErfK/YbiS/YcfS/YnhG precursor BRADO5698 85 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146339191 Common fabI enoyl-(acyl carrier protein) reductase BRADO2151 223 COG0623 FabI, Enoyl- acyl-carrier-protein 146342054 Common - Hypothetical protein; putative SAM-dependent methyltransferase domain protein BRADO5194 33 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 146343822 Common - putative Glycosyltransferase, group 1 BRADO7071 218 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146341944 Common - Putative thioesterase BRADO5080 62 COG0824 FcbC, Predicted thioesterase General function prediction only 146342181 Nonpathogen - hypothetical protein BRADO5331 1 None None None 146343248 Common - conserved hypothetical protein; putative exported protein BRADO6468 31 COG1434 COG1434, Uncharacterized conserved protein Function unknown 146343864 Common - conserved hypothetical protein; putative NTF2-like domain BRADO7114 49 COG3558 COG3558, Uncharacterized protein conserved in bacteria Function unknown 146339578 Common - putative hydrolase BRADO2569 6 COG4188 COG4188, Predicted dienelactone hydrolase General function prediction only 146338554 Common cheW Chemotaxis protein cheW BRADO1474 129 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 146337950 Common - conserved hypothetical protein; putative signal peptide BRADO0840 7 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146338886 Common cheR Chemotaxis protein methyltransferase BRADO1825 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 146338602 Common - putative hydrolase (Serine esterase) BRADO1530 59 COG0657 Aes, Esterase/lipase Lipid metabolism 146343753 Common cheR Chemotaxis protein methyltransferase BRADO7000 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 146343599 Common - conserved hypothetical protein; putative signal peptide; putative ErfK/YbiS/YcfS/YnhG BRADO6837 87 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146337840 Common - potassium/proton antiporter BRADO0721 140 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 146341730 Common - putative sugar-phosphate nucleotidyltransferase; putative glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) BRADO4835 146 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 146341912 Nonpathogen - hypothetical protein BRADO5047 1 None None None 146338329 Nonpathogen - hypothetical protein BRADO1234 9 COG5490 COG5490, Uncharacterized conserved protein Function unknown 146342567 Nonpathogen - conserved hypothetical protein; putative ankyrin domain BRADO5730 4 None None None 146341989 Common - hypothetical protein BRADO5125 16 COG2259 COG2259, Predicted membrane protein Function unknown 146342604 Common - putative maleylacetoacetate isomerase (MAAI) (Glutathione S-transferase) BRADO5768 71 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146339761 Nonpathogen - hypothetical protein BRADO2761 1 None None None 146343666 Common - conserved hypothetical protein; putative Acyl-CoA N-acyltransferases BRADO6908 5 None None None 146340228 Common - hypothetical protein BRADO3247 31 COG4307 COG4307, Uncharacterized protein conserved in bacteria Function unknown 146337274 Common ohrR Organic hydroperoxide resistance transcriptional regulator, MarR family BRADO0101 119 COG1846 MarR, Transcriptional regulators Transcription 146342922 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6103 6 None None None 146339008 Common - Putative Amidohydrolase family protein; putative hippurate hydrolase (Benzoylglycine amidohydrolase) BRADO1957 165 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 146339746 Nonpathogen - hypothetical protein BRADO2746 1 None None None 146340992 Common - putative Beta-lactamase BRADO4063 52 COG2367 PenP, Beta-lactamase class A Defense mechanisms 146338566 Common - putative transcriptional regulatory protein, GntR family BRADO1487 117 COG1802 GntR, Transcriptional regulators Transcription 146342913 Common - hypothetical protein BRADO6094 23 COG3908 COG3908, Uncharacterized protein conserved in bacteria Function unknown 146337743 Common - Conserved hypothetical protein; putative DedA family protein BRADO0615 144 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 146340115 Common - putative glutaminase BRADO3130 90 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 146338926 Common - hypothetical protein BRADO1866 11 None None None 146342194 Common - conserved hypothetical protein; putative inner membrane protein BRADO5345 56 COG0392 COG0392, Predicted integral membrane protein Function unknown 146338689 Nonpathogen - hypothetical protein BRADO1621 1 None None None 146339637 Common - hypothetical protein BRADO2630 16 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 146340915 Common - hypothetical protein containing a putative response regulator receiver (CheY-like) domain BRADO3984 8 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146343428 Common - putative dioxygenase; putative phtalate dioxygenase oxygenase subunit BRADO6657 72 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 146338774 Nonpathogen - hypothetical protein; putative signal peptide; putative Cytochrome c region BRADO1708 1 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146341436 Common - conserved hypothetical protein; putative Acyl-CoA N-acyltransferase domain BRADO4527 81 COG3146 COG3146, Uncharacterized protein conserved in bacteria Function unknown 146338725 Common cbbA fructose-1,6-bisphosphate aldolase BRADO1658 175 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 146338444 Common - putative O-linked N-acetylglucosamine transferase, SPINDLY family; TPR domain protein BRADO1360 127 COG3914 Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family Posttranslational modification, protein turnover, chaperones 146340479 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO3520 16 None None None 146338785 Common cyoA cytochrome o ubiquinol oxidase subunit II (Ubiquinol oxidase chain B) BRADO1719 128 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 146339031 Common - hypothetical protein BRADO1982 40 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146337800 Common - conserved hypothetical protein; putative hydrolase; putative exported protein BRADO0679 37 COG3571 COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 146341389 Common - putative soluble lytic transglycosylase (SLT); putative signal peptide BRADO4476 142 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 146338674 Common bchI Magnesium-chelatase 38 kDa subunit (Mg-protoporphyrin IX chelatase) BRADO1606 69 COG1239 ChlI, Mg-chelatase subunit ChlI Coenzyme metabolism 146342447 Common - Putative sulfate transporter with a STAS domain (C-terminal) BRADO5606 108 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 146343609 Common - Conserved hypothetical protein; possible sulfur oxidation protein precursor SoxY; putative signal peptide BRADO6847 36 COG5501 COG5501, Predicted secreted protein Function unknown 146339451 Common - conserved hypothetical protein with CBS domain BRADO2437 120 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 146340089 Common - ABC transporter ATP-binding protein (tauB-like) BRADO3098 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146342048 Common - Putative sulfotransferase protein BRADO5188 27 COG4424 COG4424, Uncharacterized protein conserved in bacteria Function unknown 146339603 Common hpcG 2-oxo-hepta-3-ene-1,7-dioate hydratase BRADO2595 63 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 146338151 Nonpathogen - hypothetical protein BRADO1048 3 None None None 146338368 Common - Putative gas vesicle synthesis protein, GvpJ-like (GvpA-related) BRADO1277 18 None None None 146343614 Common - Conserved hypothetical protein; putative bifunctional protein: Zn-dependent hydrolase including glyoxylases (N-terminal) and Rhodanese-related sulfurtransferase (C-terminal) BRADO6852 209 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146337205 Common - putative pfkB family carbohydrate kinase; putative Adenosine kinase BRADO0031 188 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 146338642 Common pps phosphoenolpyruvate synthase BRADO1573 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 146342520 Common - putative two component sensor histidine kinase BRADO5682 204 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146339797 Common rpsD 30S ribosomal protein S4 BRADO2798 242 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 146341687 Common glpD glycerol-3-phosphate dehydrogenase BRADO4792 148 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 146343358 Common - Putative peroxiredoxin BRADO6585 81 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146340450 Nonpathogen - hypothetical protein BRADO3490 1 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 146337350 Common - putative two-component transcriptional regulator. BRADO0183 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146343590 Nonpathogen - hypothetical protein; putative signal peptide BRADO6828 1 None None None 146340415 Common - conserved hypothetical protein; putative signal peptide BRADO3451 16 None None None 146337587 Common - hypothetical protein BRADO0443 30 COG3380 COG3380, Predicted NAD/FAD-dependent oxidoreductase General function prediction only 146340400 Nonpathogen - hypothetical protein BRADO3433 1 COG5373 COG5373, Predicted membrane protein Function unknown 146342983 Common - Putative HlyD family secretion protein BRADO6166 132 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146337897 Common rnpA Ribonuclease P protein component (RNaseP protein) (Protein C5) BRADO0783 24 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 146337209 Common - putative nifU protein (C-terminal fragment) BRADO0035 94 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 146338201 Common fadD feruloyl-CoA synthase BRADO1099 203 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146341103 Common nuoK NADH dehydrogenase subunit K BRADO4174 135 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 146339408 Common - acetyl-CoA acetyltransferase BRADO2393 178 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 146340217 Common - Thioredoxin peroxidase (AhpC, Alkyl hydroperoxide reductase) BRADO3235 209 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146337653 Common - putative intracellular PHB depolymerase BRADO0519 44 COG4553 DepA, Poly-beta-hydroxyalkanoate depolymerase Lipid metabolism 146341797 Common - Putative cobalamin synthase (CobS family) BRADO4916 141 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 146341065 Common ispU Undecaprenyl pyrophosphate synthetase 2 (UPP synthetase 2) (Di-trans,poly-cis-decaprenylcistransferase 2) (Undecaprenyl diphosphate synthase 2) (UDS 2) BRADO4136 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 146339460 Common - putative transporter BRADO2446 93 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146341021 Common - conserved hypothetical protein; putative Metallo-beta-lactamase family protein BRADO4092 79 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146339278 Common - putative transcription regulator (AraC-type) BRADO2254 156 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146340952 Common - conserved hypothetical protein; putative signal peptide; putative transglycolase BRADO4023 104 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146342654 Nonpathogen - hypothetical protein BRADO5821 8 None None None 146343510 Common pyrD dihydroorotate dehydrogenase 2 BRADO6742 234 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 146341993 Common - hypothetical protein BRADO5129 6 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 146342346 Common - putative ABC transporter (permease protein) BRADO5502 164 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146340463 Nonpathogen - hypothetical protein BRADO3503 6 None None None 146341985 Common - putative Multidrug resistance protein (hlyD family), emrA-like BRADO5121 132 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146342740 Common ssuD alkanesulfonate monooxygenase BRADO5912 77 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146337629 Common - hypothetical protein BRADO0494 42 COG3304 COG3304, Predicted membrane protein Function unknown 146342847 Common coxE Carbon monoxide dehydrogenase, coxE accessory protein BRADO6027 48 COG3552 CoxE, Protein containing von Willebrand factor type A (vWA) domain General function prediction only 146339389 Common - hypothetical protein BRADO2374 18 COG2267 PldB, Lysophospholipase Lipid metabolism 146343490 Nonpathogen - hypothetical protein BRADO6722 4 None None None 146342840 Nonpathogen - hypothetical protein BRADO6019 1 None None None 146342611 Nonpathogen - hypothetical protein; putative exported protein BRADO5775 1 None None None 146340601 Common - hypothetical protein; putative tail fiber protein fragment BRADO3646 19 COG4733 COG4733, Phage-related protein, tail component Function unknown 146343080 Common sodB superoxide dismutase, iron/manganese cofactor BRADO6273 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 146338879 Common araG L-arabinose transport ATP-binding protein araG BRADO1818 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146337827 Nonpathogen - Conserved hypothetical protein; putative signal peptide BRADO0708 1 None None None 146341323 Common ddpB putative dipeptide ABC transporter, permease protein BRADO4405 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338397 Nonpathogen - hypothetical protein BRADO1311 1 None None None 146337763 Common - Conserved hypothetical protein; putative ribosomal protein S4 BRADO0640 21 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 146337852 Common ptsH PTS system phosphocarrier protein HPr (Histidine-containing protein) BRADO0733 148 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 146340516 Common argC N-acetyl-gamma-glutamyl-phosphate reductase BRADO3558 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 146343178 Common - hypothetical protein; putative replication protein BRADO6379 10 COG5655 COG5655, Plasmid rolling circle replication initiator protein and truncated derivatives DNA replication, recombination, and repair 146342875 Common uvrC excinuclease ABC subunit C BRADO6055 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 146342459 Common uvrD DNA helicase II BRADO5618 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 146338320 Nonpathogen - hypothetical protein BRADO1225 1 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 146342812 Common - putative glutathione S-transferase (GST) BRADO5989 20 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146341280 Nonpathogen - hypothetical protein BRADO4359 1 None None None 146342579 Common - conserved hypothetical protein; putative exported protein BRADO5742 83 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146337975 Common - conserved hypothetical protein; putative Polysaccharide deacetylase family protein BRADO0867 63 COG3195 COG3195, Uncharacterized protein conserved in bacteria Function unknown 146338490 Common - putative two-component response regulator (OmpR family) BRADO1408 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146341754 Common - Putative ABC transporter, substrate-binding protein; putative aliphatic sulphonates transporter BRADO4871 80 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146339322 Common dctA C4-dicarboxylate transport protein BRADO2301 163 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 146338497 Common - conserved hypothetical protein; putative signal peptide BRADO1415 132 COG1704 LemA, Uncharacterized conserved protein Function unknown 146338432 Nonpathogen - hypothetical protein BRADO1347 2 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 146339242 Nonpathogen - hypothetical protein; putative signal peptide BRADO2208 1 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 146340981 Common argS arginyl-tRNA synthetase BRADO4052 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146341057 Common - hypothetical protein BRADO4128 45 COG3494 COG3494, Uncharacterized protein conserved in bacteria Function unknown 146339287 Common - putative transcriptional regulatory protein, LysR family BRADO2263 164 COG0583 LysR, Transcriptional regulator Transcription 146341547 Common - conserved hypothetical protein; putative secreted protein, with putative Hemerythrin HHE cation binding region BRADO4645 14 COG3945 COG3945, Uncharacterized conserved protein Function unknown 146341743 Common - Putative aliphatic amidase expression-regulating protein, amiC BRADO4858 125 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340435 Common nrd ribonucleotide-diphosphate reductase subunit alpha BRADO3475 163 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 146341865 Common - Conserved hypothetical protein; putative Metal dependent phosphohydrolase containing a CheY-like response regulator receiver domain (N-term) BRADO4997 120 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 146341235 Common - putative short-chain dehydrogenase/reductase (SDR) BRADO4311 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146338838 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1775 1 None None None 146337572 Common - conserved hypothetical protein YbeA BRADO0427 166 COG1576 COG1576, Uncharacterized conserved protein Function unknown 146338968 Common - putative sugar ABC transport system, permease component BRADO1912 155 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146339665 Common - putative amidase expression-regulating protein BRADO2659 118 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339376 Common - putative transcriptional regulatory protein, LacI family BRADO2358 97 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146337645 Common - Putative glycosyl hydrolase, family 13; Putative alpha-glucosidase BRADO0511 168 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 146337541 Common - hypothetical protein BRADO0395 30 None None None 146339055 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2009 3 None None None 146340742 Common - putative carboxylase, like RuBisCO, small subunit BRADO3797 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 146338792 Common - hypothetical protein BRADO1726 12 COG4487 COG4487, Uncharacterized protein conserved in bacteria Function unknown 146339348 Nonpathogen - hypothetical protein BRADO2329 2 None None None 146343128 Common - hypothetical protein BRADO6326 5 None None None 146337979 Common - Putative ABC transporter (permease protein) BRADO0871 181 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146342031 Common - putative transketolase N-terminal section (TK) BRADO5169 222 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 146341121 Nonpathogen - hypothetical protein; putative signal peptide BRADO4192 1 None None None 146342794 Common - hypothetical protein BRADO5971 11 None None None 146340314 Common - Molybdenum storage protein beta subunit (Mo storage protein beta subunit) (MoSto beta subunit) BRADO3337 33 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 146339233 Nonpathogen - hypothetical protein BRADO2199 1 None None None 146343642 Common - putative O-succinylbenzoate--CoA ligase BRADO6882 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146342256 Common - putative Ferredoxin, 2Fe-2S BRADO5410 69 COG0633 Fdx, Ferredoxin Energy production and conversion 146342975 Common - putative Transcriptional regulatory protein, TetR family BRADO6158 23 COG1309 AcrR, Transcriptional regulator Transcription 146337281 Common - putative small heat shock protein; putative HSP20-like chaperone BRADO0108 65 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 146341100 Common nuoN NADH dehydrogenase subunit N BRADO4171 209 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 146341909 Common - Conserved hypothetical protein; putative two-component sensor histidine kinase with a methyl-accepting chemotaxis protein (N-term), a PAS domain (central) and a histidine kinase (C-term) BRADO5043 112 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146337725 Common - putative transposase BRADO0597 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146338478 Common xylB xylulokinase (xylulose kinase) BRADO1395 184 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 146339534 Common paaK phenylacetyl-CoA ligase BRADO2524 116 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 146343622 Common - Putative permease of the Major Facilitator Superfamily; possibly involved in drug resistance BRADO6861 21 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146340496 Common - conserved hypothetical protein; putative membrane protein; putative acyltransferase domain BRADO3538 29 None None None 146340148 Common - putative multidrug efflux protein BRADO3163 190 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146340235 Nonpathogen - hypothetical protein BRADO3254 2 None None None 146338898 Common - hypothetical protein BRADO1837 22 COG5553 COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily General function prediction only 146340039 Common nusG transcription antitermination protein NusG BRADO3047 216 COG0250 NusG, Transcription antiterminator Transcription 146342824 Common - hypothetical protein BRADO6003 94 COG1565 COG1565, Uncharacterized conserved protein Function unknown 146340588 Nonpathogen - hypothetical protein BRADO3633 8 None None None 146342680 Common - Putative hydroxyacid dehydrogenase/reductase; putative 3-hydroxyisobutyrate dehydrogenase BRADO5847 179 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146338136 Common - Putative branched-chain amino acid ABC transporter (permease protein) BRADO1033 148 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146339618 Common - putative transcriptional activator BRADO2611 27 COG3806 ChrR, Transcriptional activator Transcription 146339736 Common cycK Cytochrome c-type biogenesis protein cycK BRADO2734 143 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 146340639 Nonpathogen - hypothetical protein; putative signal peptide. BRADO3687 1 None None None 146338955 Nonpathogen - hypothetical protein BRADO1899 3 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 146343312 Common - hypothetical protein BRADO6537 32 COG0400 COG0400, Predicted esterase General function prediction only 146338193 Nonpathogen - hypothetical protein BRADO1091 4 None None None 146343352 Common - phosphoribosyl-ATP pyrophosphohydrolase (hisE-like) BRADO6579 133 COG0140 HisI, Phosphoribosyl-ATP pyrophosphohydrolase Amino acid transport and metabolism 146343655 Common - Putative branched-chain amino acid ABC transporter, substrate-binding protein BRADO6897 128 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339316 Nonpathogen - hypothetical protein BRADO2294 2 None None None 146339130 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2084 3 None None None 146340290 Common acpP acyl carrier protein BRADO3313 207 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146341760 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4877 1 None None None 146337637 Common - hypothetical protein BRADO0502 44 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146337348 Common - putative exodeoxyribonuclease III (xthA) BRADO0181 195 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 146342019 Common - putative Asparagine synthetase BRADO5156 148 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 146342851 Common coxM Carbon monoxide dehydrogenase medium chain (CO dehydrogenase subunit M) (CO-DH M) BRADO6031 100 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146337622 Nonpathogen - hypothetical protein BRADO0487 1 None None None 146339257 Common - conserved hypothetical protein; putative TonB domain BRADO2228 6 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 146341641 Common - putative histidinol-phosphate aminotransferase (HisC-like) BRADO4744 222 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 146341515 Common ptsH sugar transport PTS system phosphocarrier protein HPr (Histidine-containing protein) (Protein H) BRADO4612 116 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 146341893 Nonpathogen fliE flagellar hook-basal body protein FliE BRADO5027 9 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 146343111 Common - hypothetical protein BRADO6308 19 None None None 146340674 Common - putative Penicillinase repressor, transcriptional regulatory protein BRADO3725 17 COG3682 COG3682, Predicted transcriptional regulator Transcription 146342304 Common - putative two-component response regulator, with HTH luxR family BRADO5459 180 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146342119 Common - putative High-affinity branched-chain amino acid transport system permease protein BRADO5265 148 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146339222 Common - hypothetical protein BRADO2187 16 None None None 146339558 Nonpathogen - hypothetical protein BRADO2549 1 None None None 146339689 Common folB dihydroneopterin aldolase (DHNA) BRADO2684 88 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 146339192 Common - putative phosphoglycerate mutase BRADO2152 153 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 146338610 Common - Putative ABC transporter (ATP-binding/permease protein) BRADO1538 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 146340040 Common rplK 50S ribosomal protein L11 BRADO3048 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 146340120 Common - enoyl-CoA hydratase BRADO3135 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146343586 Common - hypothetical protein; putative signal peptide; putative caspase domain BRADO6824 19 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339648 Common - GMC-type oxidoreductase BRADO2641 89 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146337609 Common - hypothetical protein BRADO0471 26 None None None 146337474 Common - conserved hypothetical protein; putative high-affinity Fe2+/Pb2+ permease BRADO0319 56 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 146337788 Common - conserved hypothetical protein; putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase with TPR repeats BRADO0666 77 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 146339553 Common - ABC transporter permease protein BRADO2544 161 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146343602 Common - putative acyl-CoA dehydrogenase BRADO6840 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146340880 Common - Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) BRADO3946 226 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146338185 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO1083 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339782 Common - conserved hypothetical protein; Putative TPR domain protein BRADO2783 14 COG4700 COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats Function unknown 146341044 Common - Putative Haloacid dehalogenase-like hydrolase BRADO4115 72 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 146343443 Common hemA 5-aminolevulinate synthase BRADO6672 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 146343090 Common - Putative outer membrane protein BRADO6285 16 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146340334 Common - conserved hypothetical protein; putative membrane protein; putative fatty acid hydroxylase family protein. BRADO3361 7 COG3000 ERG3, Sterol desaturase Lipid metabolism 146343528 Nonpathogen - hypothetical protein BRADO6763 7 None None None 146343032 Common - putative Adenylate cyclase BRADO6220 47 COG5616 COG5616, Predicted integral membrane protein Function unknown 146337943 Common - conserved hypothetical protein; putative von Willebrand factor type A (VWA) domain BRADO0833 25 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 146343406 Common - putative arsenate reductase (ArsC-like) BRADO6635 98 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 146338309 Common glpD glycerol-3-phosphate dehydrogenase BRADO1214 128 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 146342026 Common - putative bifunctional enzyme (sugar kinase/cytidylyltransferase) BRADO5164 116 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 146343517 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO6749 3 None None None 146338149 Common - putative signal transduction histidine kinase with Chase domain BRADO1046 29 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146338934 Common hemC porphobilinogen deaminase BRADO1874 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 146338534 Common - hypothetical protein BRADO1453 7 None None None 146342263 Common - conserved hypothetical protein; TPR repeat BRADO5417 12 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 146340920 Nonpathogen - hypothetical protein BRADO3991 1 None None None 146340307 Nonpathogen - hypothetical protein BRADO3330 3 None None None 146337454 Common - putative transposase IS66 family BRADO0294 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342666 Nonpathogen - hypothetical protein BRADO5833 1 None None None 146342467 Nonpathogen - hypothetical protein BRADO5626 1 None None None 146337847 Common - conserved hypothetical protein; putative Rhodanese-related sulfurtransferase BRADO0728 49 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146342327 Nonpathogen - Putative ABC transporter (periplasmic binding protein) BRADO5482 1 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146338507 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1425 5 None None None 146341520 Nonpathogen - hypothetical protein BRADO4617 4 None None None 146340988 Common - putative monooxygenase BRADO4059 19 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146338065 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0960 1 None None None 146339483 Common nrtB nitrate transport permease protein (nrtB) BRADO2472 174 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146340929 Common - putative transcriptional regulatory protein, LysR family; putative OprD regulatory protein. BRADO4000 174 COG0583 LysR, Transcriptional regulator Transcription 146338267 Common - Putative TolR protein BRADO1171 131 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 146343544 Common - hypothetical protein BRADO6781 33 COG5352 COG5352, Uncharacterized protein conserved in bacteria Function unknown 146342643 Common - 6-phosphogluconate dehydrogenase-like protein BRADO5810 184 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 146337558 Common xerC site-specific tyrosine recombinase XerC BRADO0412 225 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146340938 Nonpathogen - hypothetical protein BRADO4009 1 None None None 146343476 Common coxA cytochrome c oxidase, subunit I BRADO6706 165 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 146342747 Common - conserved hypothetical protein; putative deoxyribonuclease BRADO5919 106 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 146340326 Common - conserved hypothetical protein; putative Acetyltransferase, GNAT family protein BRADO3352 36 COG2153 ElaA, Predicted acyltransferase General function prediction only 146341134 Common glnA Glutamine synthetase I (Glutamate--ammonia ligase I) (GSI) BRADO4205 227 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 146337802 Common - Putative ABC transporter, ATP-binding protein BRADO0681 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146339186 Common pdxH pyridoxamine 5'-phosphate oxidase BRADO2146 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 146342901 Common - putative cytidine and deoxycytidylate deaminase BRADO6082 213 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 146343813 Common - putative serine/threonine protein phosphatase BRADO7062 94 None None None 146340250 Common - conserved hypothetical protein; putative signal peptide BRADO3271 19 COG3391 COG3391, Uncharacterized conserved protein Function unknown 146339493 Nonpathogen - putative ferredoxin-type membrane protein BRADO2482 1 None None None 146339752 Common - Putative extracellular solute-binding protein, family 3 ; putative glutamate/aspartate periplasmic-binding protein BRADO2752 156 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146339856 Common - Putative carbon monoxide dehydrogenase medium subunit, coxM-like protein BRADO2858 98 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146340082 Common rplQ 50S ribosomal protein L17 BRADO3091 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 146337312 Common - putative hydrolase; putative Metal-dependent hydrolase of the beta-lactamase superfamily III BRADO0143 84 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 146341028 Nonpathogen - hypothetical protein BRADO4099 1 None None None 146340072 Common rplF 50S ribosomal protein L6 BRADO3081 243 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 146340845 Common - putative cyclopropane-fatty-acyl-phospholipid synthase (Cfa-like) BRADO3908 126 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 146338401 Common - hypothetical protein; putative signal peptide BRADO1315 9 None None None 146341506 Common - putative dipeptide ABC transporter, permease protein (fragment) BRADO4601 184 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146343691 Nonpathogen - hypothetical protein BRADO6934 1 None None None 146337885 Common def Peptide deformylase (PDF) (Polypeptide deformylase) BRADO0770 209 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 146337617 Common - putative transcriptional regulator BRADO0479 20 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 146339188 Common - putative heat shock protein DnaJ BRADO2148 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146342004 Common - putative Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein BRADO5140 107 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146341177 Common - Conserved hypothetical protein; Putative myosin-cross-reactive antigen BRADO4250 25 COG4716 COG4716, Myosin-crossreactive antigen Function unknown 146342694 Common - Putative urease accessory protein ureD BRADO5861 14 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 146339284 Common - putative Cytochrome-c oxidase subunit I BRADO2260 164 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 146342312 Common - conserved hypothetical protein; putative Rhodanese-like domain protein BRADO5467 14 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146340108 Common - hypothetical protein BRADO3122 6 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 146341657 Common - putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (dctQ/dctM domains) BRADO4761 114 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146342955 Common - Putative Amidohydrolase BRADO6138 56 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146342077 Common - Putative pilus assembly protein cpaB BRADO5218 58 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 146343290 Common - putative Phosphotransferase enzyme family BRADO6511 28 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 146343376 Common - putative oxidoreductase (aldo/keto reductase); putative aryl-alcohol dehydrogenase (NADP+) BRADO6605 202 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146339511 Common - putative RND efflux membrane fusion protein precursor BRADO2501 175 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146342273 Common - hypothetical protein BRADO5427 41 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 146337606 Common - hypothetical protein; putative RecA-superfamily ATPase (involved in signal transduction) BRADO0467 15 COG3598 RepA, RecA-family ATPase DNA replication, recombination, and repair 146340609 Nonpathogen - hypothetical protein BRADO3654 1 None None None 146338088 Common - Putative acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase pimC (large subunit) BRADO0984 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341738 Common - Putative Acetamidase/Formamidase family protein BRADO4853 65 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146339882 Common - Putative xanthine dehydrogenase, molybdenum binding subunit BRADO2884 118 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146341435 Common - putative glycerophosphoryl diester phosphodiesterase BRADO4526 41 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 146341876 Common - putative carotenoid oxygenase BRADO5008 35 COG3670 COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146339724 Common - Conserved hypothetical protein; Putative Outer membrane protein and related peptidoglycan-associated (lipo)proteins BRADO2722 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146340320 Common - putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) BRADO3343 113 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 146339889 Common - Putative transcriptional regulatory protein, LysR family BRADO2891 115 COG0583 LysR, Transcriptional regulator Transcription 146340024 Common - conserved hypothetical protein, putative methyl-accepting chemotaxis receptor/sensory transducer BRADO3031 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338299 Nonpathogen - hypothetical protein BRADO1203 3 None None None 146341276 Common - putative alcohol dehydrogenase (Zinc-containing)(AdhT-like) BRADO4353 215 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 146339366 Common amn AMP nucleosidase BRADO2347 54 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 146340963 Common secF preprotein translocase subunit SecF BRADO4034 213 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 146342424 Common - hypothetical protein BRADO5583 40 COG3814 COG3814, Uncharacterized protein conserved in bacteria Function unknown 146343865 Common - putative sensor histidine kinase with a response regulator receiver domain BRADO7116 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146340473 Common - putative membrane carboxypeptidase/penicillin-binding protein; putative exported protein BRADO3514 201 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 146337526 Common - putative metallo-hydrolase/oxidoreductase BRADO0380 91 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 146341607 Common - hypothetical protein BRADO4708 18 COG3832 COG3832, Uncharacterized conserved protein Function unknown 146341476 Common - conserved hypothetical protein; putative translation initiation inhibitor-related protein BRADO4569 149 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 146337334 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0165 6 None None None 146342222 Common - putative ABC transporter (ATP-binding protein) BRADO5374 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146338868 Common ytfQ ABC transporter periplasmic-binding protein ytfQ precursor BRADO1807 106 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146341510 Common - putative dipeptide ABC transporter (fragment), periplasmic binding protein BRADO4606 66 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146338732 Common - putative lytic murein transglycosylase BRADO1665 102 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 146339842 Nonpathogen - conserved hypothetical protein; putative signal peptide; putative calcium-binding domain (EF-hand) BRADO2843 2 COG5126 FRQ1, Ca2+-binding protein (EF-Hand superfamily) Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only 146342254 Nonpathogen - hypothetical protein BRADO5408 5 None None None 146341883 Common fumA fumarase A (fumarate hydratase class I) BRADO5016 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 146339306 Nonpathogen - hypothetical protein BRADO2282 6 None None None 146338462 Nonpathogen - hypothetical protein BRADO1379 5 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146343098 Common - acyl-CoA synthetase BRADO6293 206 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340079 Common rpsM 30S ribosomal protein S13 BRADO3088 240 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 146337946 Common - Conserved hypothetical protein; Putative ATPase family protein BRADO0836 62 COG0714 COG0714, MoxR-like ATPases General function prediction only 146343063 Common - Putative transcriptional regulatory protein, LysR-family BRADO6255 130 COG0583 LysR, Transcriptional regulator Transcription 146337755 Common rpsU 30S ribosomal protein S21 BRADO0630 72 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 146337376 Common - putative Aminoglycoside N(6')-acetyltransferase (aacA4) BRADO0209 30 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146341710 Common - putative exopolysaccharide production protein (ExoQ-like); putative membrane protein BRADO4815 11 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 146343672 Common - hypothetical protein BRADO6915 32 COG1415 COG1415, Uncharacterized conserved protein Function unknown 146341212 Common - hypothetical protein BRADO4286 93 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 146342928 Common - Conserved hypothetical protein; putative YdjC-like protein BRADO6109 40 COG3394 COG3394, Uncharacterized protein conserved in bacteria Function unknown 146338300 Common rpsU 30S ribosomal protein S21 BRADO1204 38 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 146339134 Common bam Indoleacetamide hydrolase (IAH) (Indole-3-acetamide hydrolase) BRADO2088 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146338574 Nonpathogen - putative cytochrome c BRADO1495 2 None None None 146342280 Common - conserved hypothetical protein (DUF269) BRADO5434 25 None None None 146340297 Common - hypothetical protein; putative Peptidase C14, Caspase domain BRADO3320 16 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146340640 Nonpathogen - hypothetical protein; putative signal peptide BRADO3688 2 None None None 146343345 Nonpathogen - hypothetical protein BRADO6572 1 None None None 146337702 Common - Putative protein methyltransferase hemK modifies release factors RF-1 and RF-2 BRADO0571 214 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 146340768 Common - putative Serine-type D-Ala-D-Ala carboxypeptidase BRADO3826 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 146340096 Common - ABC transporter ATP-binding protein BRADO3105 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146337242 Common - putative oxidoreductase, aldo/keto reductase family BRADO0068 196 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146340288 Common fabG 3-oxoacyl-[acyl-carrier-protein] reductase BRADO3311 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146340785 Common - hypothetical protein BRADO3843 3 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 146338441 Nonpathogen - hypothetical protein; putative signal peptide BRADO1357 1 None None None 146339904 Common - conserved hypothetical protein; putative competence damage protein; putative molybdopterin binding domain BRADO2908 165 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 146339379 Common rbsA Sugar (ribose) ABC transporter ATP-binding protein BRADO2361 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146341959 Common - Transcriptional regulator ttuA (Tartrate utilization transcriptional regulator) BRADO5095 183 COG0583 LysR, Transcriptional regulator Transcription 146341722 Common - putative polysaccharide transport protein BRADO4827 73 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 146337519 Nonpathogen - hypothetical protein BRADO0373 1 None None None 146341247 Common - hypothetical protein BRADO4323 18 None None None 146340242 Nonpathogen - hypothetical protein BRADO3262 1 None None None 146337887 Common truA tRNA pseudouridine synthase A BRADO0772 236 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 146338014 Nonpathogen - hypothetical protein BRADO0907 2 None None None 146339790 Common - hypothetical protein BRADO2791 65 COG4301 COG4301, Uncharacterized conserved protein Function unknown 146342161 Nonpathogen - hypothetical protein BRADO5311 1 None None None 146339865 Common - putative Alpha-galactosidase (Melibiase) BRADO2867 53 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 146343573 Common - putative transcriptional regulator, MarR/EmrR family BRADO6811 41 COG1846 MarR, Transcriptional regulators Transcription 146341127 Common clpP ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) BRADO4198 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146342127 Common - hypothetical protein BRADO5274 14 None None None 146337868 Common - Conserved hypothetical protein; putative membrane protein; putative Acyltransferase family protein BRADO0753 24 COG4763 COG4763, Predicted membrane protein Function unknown 146339049 Common - hypothetical protein BRADO2002 26 COG5389 COG5389, Uncharacterized protein conserved in bacteria Function unknown 146340165 Common - putative sulfur oxidation protein (soxZ) BRADO3181 33 None None None 146341271 Common - putative methane/phenol/toluene monooxygenase (A subunit, beta chain) BRADO4348 16 None None None 146339340 Common - enoyl-CoA hydratase BRADO2321 177 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146338697 Nonpathogen ppsR2 transcriptional regulator PpsR2; Fis family BRADO1629 13 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 146343649 Common - putative formamidase regulatory protein FmdB BRADO6891 22 None None None 146338741 Common pstC high-affinity phosphate transport protein (ABC superfamily, membrane) BRADO1675 225 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 146342620 Nonpathogen - hypothetical protein, putative membrane protein BRADO5785 1 None None None 146339477 Nonpathogen - hypothetical protein BRADO2466 1 None None None 146341138 Common - putative gamma-glutamyl hydrolase family protein BRADO4209 113 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 146342996 Common - putative Spermidine/putrescine ABC transporter (permease protein) BRADO6180 205 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146343783 Common - hypothetical protein BRADO7031 5 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 146341491 Common - putative carbon-monoxide dehydrogenase large subunit, coxL-like protein BRADO4584 114 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146342373 Common - putative transposase BRADO5530 90 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 146340630 Common - putative transcriptional regulatory protein, TetR family BRADO3678 93 COG1309 AcrR, Transcriptional regulator Transcription 146343232 Common - Conserved hypothetical protein; putative MOSC (MOCO sulphurase C-terminal) domain BRADO6451 33 COG3217 COG3217, Uncharacterized Fe-S protein General function prediction only 146341851 Common alaS alanyl-tRNA synthetase BRADO4981 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146337831 Common - Putative transcriptional regulatory protein (Crp family with a cAMP binding domain) BRADO0712 68 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146341015 Common pdhB pyruvate dehydrogenase subunit beta BRADO4086 220 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 146341030 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase BRADO4101 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 146337619 Nonpathogen - hypothetical protein; putative secreted protein BRADO0481 1 None None None 146340530 Common glpX fructose 1,6-bisphosphatase II BRADO3573 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 146343229 Nonpathogen - hypothetical protein BRADO6448 2 None None None 146341844 Common - putative transcriptional regulatory protein, LysR family BRADO4974 178 COG0583 LysR, Transcriptional regulator Transcription 146338178 Common - D-beta-hydroxybutyrate dehydrogenase (BDH) (3-hydroxybutyrate dehydrogenase) (3-HBDH) BRADO1076 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342865 Common - putative FAD-binding monooxygenase; putative 3-(3-hydroxy-phenyl)propionate hydroxylase BRADO6045 82 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146339521 Common - putative oligopeptide ABC transporter (permease protein) BRADO2511 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146339107 Common - conserved hypothetical protein; putative signal peptide BRADO2061 35 COG3652 COG3652, Predicted outer membrane protein Function unknown 146342511 Common - putative multidrug resistance protein B (drug efflux transporter, EmrB-like) BRADO5673 204 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338289 Common - putative transcriptional regulator, AbrB family BRADO1193 22 COG2336 MazE, Growth regulator Signal transduction mechanisms 146342490 Common - Conserved hypothetical protein; Putative Lipoprotein with tetratricopeptide repeat (TPR) domain BRADO5651 128 COG4105 ComL, DNA uptake lipoprotein General function prediction only 146342896 Common - putative oxydoreductase, GMC family BRADO6077 83 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146340488 Common - hypothetical protein BRADO3530 33 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 146340135 Common - putative exopolyphosphatase BRADO3150 178 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 146342772 Common - conserved hypothetical protein; putative signal peptide BRADO5947 27 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 146340026 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3033 2 None None None 146339126 Nonpathogen - hypothetical protein BRADO2080 2 None None None 146341725 Common - putative dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose 3,5-epimerase) (dTDP-L-rhamnose synthetase), (rfbC-like) BRADO4830 162 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 146339813 Common - conserved hypothetical protein; putative Sensor histidine kinase (HWE family) BRADO2814 29 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146343574 Nonpathogen - hypothetical protein; putative membrane protein; putative signal peptide BRADO6812 1 COG3152 COG3152, Predicted membrane protein Function unknown 146341498 Common fixG nitrogen fixation protein FixG (homologous to rdxB), with 4Fe-4S ferredoxin, iron-sulfur binding domain BRADO4592 79 COG0348 NapH, Polyferredoxin Energy production and conversion 146343281 Common - putative HNH endonuclease:HNH nuclease BRADO6502 95 COG1403 McrA, Restriction endonuclease Defense mechanisms 146342860 Common - putative transcriptional regulator, MarR family BRADO6040 46 COG1846 MarR, Transcriptional regulators Transcription 146343191 Common - hypothetical protein BRADO6395 17 COG2944 COG2944, Predicted transcriptional regulator Transcription 146338242 Common - hypothetical protein BRADO1146 70 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 146341655 Nonpathogen - hypothetical protein; putative SAM-dependent methyltransferase BRADO4759 4 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146342358 Common - putative transcriptional regulatory protein, GntR family with an UbiC transcription regulator-associated domain BRADO5514 130 COG2188 PhnF, Transcriptional regulators Transcription 146341574 Common acpXL acyl carrier protein BRADO4675 49 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340166 Common - putative sulfur oxidation protein (SoxA); cytochrome c precursor BRADO3182 33 COG3258 COG3258, Cytochrome c Energy production and conversion 146341038 Common trpD anthranilate phosphoribosyltransferase BRADO4109 218 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 146343556 Nonpathogen - hypothetical protein BRADO6793 1 None None None 146337732 Common - hypothetical protein BRADO0604 3 COG5412 COG5412, Phage-related protein Function unknown 146342537 Nonpathogen - Junctophilin-4 (Junctophilin-like 1 protein) (fragment) BRADO5699 1 None None None 146337391 Common ftsK DNA translocase BRADO0224 198 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 146340193 Nonpathogen - hypothetical protein BRADO3210 1 None None None 146341195 Common ssuD putative alkanesulfonate monooxygenase (FMNH2-dependent aliphatic sulfonate monooxygenase) BRADO4269 77 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146338417 Common - putative transcriptional regulatory protein, Ars family BRADO1332 165 COG0640 ArsR, Predicted transcriptional regulators Transcription 146340763 Nonpathogen - hypothetical protein BRADO3821 1 None None None 146339365 Common aroE Shikimate dehydrogenase BRADO2346 225 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 146339570 Common - putative sensory transducer protein BRADO2561 160 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337486 Common - putative multi antimicrobial extrusion protein (MatE) BRADO0332 100 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 146339339 Common - putative oxidoreductase BRADO2320 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146339875 Common - putative dolichol-phosphate mannosyltransferase; putative membrane protein BRADO2877 177 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146340330 Nonpathogen - hypothetical protein BRADO3357 1 None None None 146342663 Common kdpA potassium-transporting ATPase subunit A BRADO5830 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 146342914 Common lpxK Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) BRADO6095 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 146338097 Common - putative ABC transporter, permease protein BRADO0993 38 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 146342499 Common ftsW essential cell division protein (stabilizes FtsZ ring) BRADO5660 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 146339686 Common - conserved hypothetical protein; putative Glutathione-dependent formaldehyde-activating (GFA) BRADO2681 66 COG3791 COG3791, Uncharacterized conserved protein Function unknown 146338163 Nonpathogen - hypothetical protein BRADO1060 4 COG3904 COG3904, Predicted periplasmic protein Function unknown 146339835 Common - Conserved hypothetical protein; putative signal peptide; putative Phospholipase C/P1 nuclease family protein BRADO2836 21 None None None 146338344 Common - conserved hypothetical protein; Putative TPR repeat domain BRADO1252 25 COG5616 COG5616, Predicted integral membrane protein Function unknown 146341809 Nonpathogen - hypothetical protein BRADO4932 1 None None None 146342055 Common - hypothetical protein; putative Polysaccharide deacetylase domain protein BRADO5195 7 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146340661 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3709 2 None None None 146343454 Common - conserved hypothetical protein; putative secreted protein BRADO6683 10 None None None 146339012 Common - hypothetical protein BRADO1961 34 COG5426 COG5426, Uncharacterized membrane protein Function unknown 146341465 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4557 4 None None None 146342733 Common flbD Two-component flagellar sigma 54 dependent transcriptional regulator, Fis family BRADO5903 175 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146339463 Common - putative transcriptional regulatory protein, LysR family BRADO2449 184 COG0583 LysR, Transcriptional regulator Transcription 146342183 Common - conserved hypothetical protein; putative membrane protein; putative exported protein BRADO5333 24 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 146338807 Common dppC Dipeptide transport system permease protein dppC (ABC transporter) BRADO1741 218 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146339071 Common - conserved hypothetical protein; putative S-adenosyl-L-methionine-dependent methyltransferase domain BRADO2025 52 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 146340350 Common - conserved hypothetical protein; putative Ferredoxin-and Adenylate/Guanylate cyclase-like domains. BRADO3377 33 COG0633 Fdx, Ferredoxin Energy production and conversion 146343046 Common hspD small heat shock protein BRADO6236 73 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 146342954 Common rpmJ 50S ribosomal protein L36 BRADO6137 49 None None None 146339936 Common - serine acetyltransferase BRADO2940 191 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 146339538 Common - hypothetical protein BRADO2529 2 None None None 146341207 Nonpathogen - hypothetical protein BRADO4281 1 None None None 146337295 Nonpathogen - conserved hypothetical protein; putative cytochrome c precursor BRADO0122 1 None None None 146339786 Common - conserved hypothetical protein; putative signal peptide BRADO2787 10 None None None 146337529 Common dapF diaminopimelate epimerase BRADO0383 179 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 146343340 Common - putative methyl-accepting chemotaxis protein BRADO6566 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146341457 Common - putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase) BRADO4549 153 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 146340502 Common sufS cysteine desulfurase BRADO3544 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 146340776 Common - putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (dctQ/dctM domains) BRADO3834 124 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146341027 Nonpathogen - putative transposase (fragment) BRADO4098 1 None None None 146342493 Common ftsA cell division protein with ATPase domain, involved in recruitment of FtsK to Z ring BRADO5654 178 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 146337417 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0255 7 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146338216 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO1115 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146338249 Common - 2-hydroxyacid dehydrogenase BRADO1153 226 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146337491 Common - putative major facilitator superfamily (MFS) transporter; putative membrane protein BRADO0337 75 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 146341075 Nonpathogen - hypothetical protein BRADO4146 2 None None None 146343669 Common metY O-acetylhomoserine aminocarboxypropyltransferase (O-acetylhomoserine (thiol)-lyase or OAH sulfhydrylase) BRADO6912 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 146341440 Common nadA quinolinate synthetase BRADO4531 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 146341433 Common - conserved hypothetical protein; putative secreted protein BRADO4524 19 None None None 146340116 Common - putative transcriptional regulatory protein, IclR family BRADO3131 53 COG1414 IclR, Transcriptional regulator Transcription 146341260 Common - putative peptidase BRADO4336 54 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 146339926 Common - hypothetical protein; putative signal peptide BRADO2930 7 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 146337297 Common - putative oxidoreductase; putative 3-hydroxyisobutyrate dehydrogenase BRADO0124 162 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146343099 Common - conserved hypothetical protein; putative exported protein BRADO6295 69 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146337304 Common infC translation initiation factor IF-3 BRADO0134 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 146338872 Common - putative transcriptional regulatory protein, GntR family. BRADO1811 103 COG2186 FadR, Transcriptional regulators Transcription 146341518 Common - putative sugar ABC transporter, ATP-binding protein containing a substrate binding domain in C-terminal (SmoK-like) BRADO4615 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146340554 Common - conserved hypothetical protein; putative Rieske [2Fe-2S] domain BRADO3598 50 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 146338075 Common - ABC transporter, permease protein; putative branched-chain amino acid transport protein BRADO0971 111 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146339332 Common - putative ABC transporter, permease protein BRADO2311 193 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146343660 Common - putative hydrolase (Epoxide hydrolase N-terminal domain-like phosphatase) BRADO6902 54 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 146342258 Nonpathogen - hypothetical protein BRADO5412 5 None None None 146337664 Common glnD PII uridylyl-transferase BRADO0530 127 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 146341695 Common - putative sugar ABC transporter, periplasmic substrate binding protein BRADO4800 44 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146343527 Common idnO gluconate 5-dehydrogenase BRADO6762 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146341357 Common - putative multidrug resistance protein (MFS family) BRADO4441 144 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146338763 Common hypF carbamoyl phosphate phosphatase, [NiFe] Hydrogenase maturation protein BRADO1697 111 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 146337322 Common - hypothetical protein BRADO0153 27 COG5488 COG5488, Integral membrane protein Function unknown 146341083 Common proS prolyl-tRNA synthetase BRADO4154 246 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146342674 Common - putative branched-chain amino acid ABC transporter, substrate-binding protein BRADO5841 50 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338511 Common cspA Cold shock protein, DNA binding BRADO1429 176 COG1278 CspC, Cold shock proteins Transcription 146339291 Common - putative branched-chain amino acid transport ATP-binding protein BRADO2267 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337646 Common - putative glycosyl hydrolase, 13 family; Putative Maltose alpha-D-glucosyltransferase (trehalose synthase) BRADO0512 154 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 146339579 Common - putative reductase BRADO2570 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339194 Common - putative Adenylate/Guanylate cyclase BRADO2154 77 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146340921 Common asd Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) BRADO3992 230 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 146343314 Common - hypothetical protein BRADO6539 13 COG3904 COG3904, Predicted periplasmic protein Function unknown 146340306 Common - DNA polymerase III subunit chi BRADO3329 51 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 146342960 Common - hypothetical protein BRADO6143 10 None None None 146340623 Nonpathogen - hypothetical protein BRADO3670 1 None None None 146339806 Nonpathogen - hypothetical protein BRADO2807 2 None None None 146342714 Common soxG Sarcosine oxidase, gamma subunit BRADO5881 22 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 146340732 Nonpathogen - hypothetical protein BRADO3785 3 None None None 146338104 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase BRADO1000 137 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 146342342 Common - putative Fumarylacetoacetate hydrolase family protein BRADO5498 171 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146340158 Common - putative transcriptional regulatory protein, Ars family, putative SoxR protein BRADO3173 87 COG0640 ArsR, Predicted transcriptional regulators Transcription 146341269 Common - putative amidohydrolase BRADO4346 23 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146339676 Nonpathogen - hypothetical protein BRADO2671 3 COG5373 COG5373, Predicted membrane protein Function unknown 146342016 Common - nucleotide sugar epimerase; putative Capsular polysaccharide biosynthesis protein BRADO5153 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146340518 Nonpathogen - putative RNA ligase BRADO3560 1 None None None 146338111 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1007 7 COG4907 COG4907, Predicted membrane protein Function unknown 146338485 Common - putative diguanylate cyclase (GGDEF) BRADO1402 172 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146341287 Nonpathogen - hypothetical protein BRADO4367 1 None None None 146337583 Nonpathogen - hypothetical protein BRADO0438 1 None None None 146339717 Common - conserved hypothetical protein; putative CYTH domain BRADO2715 45 COG2954 COG2954, Uncharacterized protein conserved in bacteria Function unknown 146340612 Nonpathogen - hypothetical protein BRADO3657 1 None None None 146342730 Common fliG flagellar motor switch protein G BRADO5900 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 146340787 Common nthA Nitrile hydratase subunit alpha (Nitrilase) (NHase) BRADO3845 21 None None None 146339997 Nonpathogen - hypothetical protein BRADO3002 2 None None None 146338498 Common - hypothetical protein BRADO1416 89 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 146340249 Common - putative ABC transporter, substrate binding protein BRADO3270 62 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146338915 Common - conserved hypothetical protein; putative dimeric alpha+beta barrel BRADO1855 4 None None None 146342218 Common - conserved hypothetical protein; putative membrane protein; putative small-conductance mechanosensitive channel BRADO5370 57 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 146339314 Common - putative chemotaxis protein methyltransferase BRADO2290 160 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 146343682 Common - Putative HlyD family secretion protein BRADO6925 128 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146340379 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO3408 131 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146340597 Nonpathogen - hypothetical protein; putative signal peptide BRADO3642 1 None None None 146339631 Common - putative membrane transporter BRADO2624 65 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 146338764 Common hypC Hydrogenase expression/formation protein HypC BRADO1698 71 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 146343411 Common - putative nucleotide-disulphide oxidoreductase; putative thioredoxin reductase (FAD binding domain) BRADO6640 245 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 146338076 Common - putative transcriptional regulator, MarR family. BRADO0972 78 COG1846 MarR, Transcriptional regulators Transcription 146337877 Common - conserved hypothetical protein; putative Histidine triad (HIT) protein BRADO0762 64 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 146341873 Common - Putative histone-lysine N-methyltransferase with a SET domain BRADO5005 24 COG2940 COG2940, Proteins containing SET domain General function prediction only 146343460 Common atpF ATP synthase subunit B, membrane-bound, F0 sector BRADO6689 23 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 146343633 Common - putative two-component sensor histidine kinase with PAS/PAC domains BRADO6873 167 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146341801 Common - putative phosphinothricin N-acetyltransferase BRADO4920 123 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146338977 Common - putative two-component response regulator, lux-R family BRADO1924 193 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146341555 Common - putative outer membrane TonB-dependent receptor; putative receptor for iron transport BRADO4653 96 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 146343550 Common - Putative short-chain dehydrogenase/reductase (SDR) BRADO6787 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339007 Common - Putative glycosyl transferase BRADO1956 112 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146340398 Nonpathogen - hypothetical protein BRADO3431 1 None None None 146343830 Common - conserved hypothetical protein; putative alcohol dehydrogenase class III BRADO7079 18 None None None 146343846 Common - hypothetical protein BRADO7096 22 COG5572 COG5572, Predicted integral membrane protein Function unknown 146338584 Nonpathogen - hypothetical protein BRADO1506 5 None None None 146338002 Common - putative carboxymethylenebutenolidase (Dienelactone hydrolase)(DLH) BRADO0895 113 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146339522 Common - putative oligopeptide ABC transporter (substrate-binding protein) BRADO2512 207 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146342887 Common ileS isoleucyl-tRNA synthetase BRADO6067 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146340693 Common - hypothetical protein BRADO3744 17 COG4649 COG4649, Uncharacterized protein conserved in bacteria Function unknown 146340341 Common - hypothetical protein BRADO3368 35 COG2259 COG2259, Predicted membrane protein Function unknown 146337398 Common sdhD Succinate dehydrogenase hydrophobic membrane anchor protein BRADO0233 34 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 146340178 Common - putative suppressor for copper-sensitivity B; putative protein-disulfide reductase BRADO3194 96 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 146343729 Common - putative HlyD family Secretion protein BRADO6976 106 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146343023 Common - putative Prophage CP4-57 regulatory protein BRADO6209 41 COG3311 AlpA, Predicted transcriptional regulator Transcription 146341068 Common tsf elongation factor Ts BRADO4139 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 146341666 Common - conserved hypothetical protein; putative predicted metal-dependent hydrolase of the TIM-barrel fold BRADO4771 48 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146338006 Common - conserved hypothetical protein; putative signal peptide BRADO0899 20 COG3672 COG3672, Predicted periplasmic protein Function unknown 146338225 Common recQ ATP-dependent DNA helicase RecQ BRADO1125 224 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 146339485 Common - putative nitric oxide dioxygenase (NOD); flavohemoprotein BRADO2474 61 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 146338373 Nonpathogen - hypothetical protein BRADO1283 1 COG5373 COG5373, Predicted membrane protein Function unknown 146343486 Common gshA gamma-glutamylcysteine synthetase (Glutamate--cysteine ligase) BRADO6718 56 COG3572 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 146343715 Common hpd 4-hydroxyphenylpyruvate dioxygenase BRADO6961 77 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 146340619 Nonpathogen - hypothetical protein BRADO3664 1 None None None 146341278 Common - hypothetical protein BRADO4356 7 None None None 146343872 Common - putative TPR domain protein; putative O-GlcNAc transferase related protein BRADO7123 150 COG0457 NrfG, FOG: TPR repeat General function prediction only 146340220 Common - hypothetical protein BRADO3239 35 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 146340541 Nonpathogen - hypothetical protein BRADO3584 1 None None None 146342776 Common - Putative aldo/keto reductase BRADO5951 186 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146337442 Common - hypothetical protein BRADO0282 38 COG4103 COG4103, Uncharacterized protein conserved in bacteria Function unknown 146343244 Common tyrC cyclohexadienyl dehydrogenase BRADO6464 178 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 146343041 Common - putative Protein-L-isoaspartate(D-aspartate) O-methyltransferase BRADO6231 41 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 146339594 Common - hypothetical protein BRADO2586 33 None None None 146338312 Common potI putrescine transport protein (ABC superfamily, membrane) BRADO1217 159 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146338544 Common dinB DNA polymerase IV BRADO1464 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 146343405 Common - Maf-like protein BRADO6634 196 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 146342753 Common msrB methionine sulfoxide reductase B BRADO5926 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 146337236 Common fabB 3-oxoacyl-(acyl carrier protein) synthase I BRADO0062 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340705 Common - Putative beta (1-6) glucans synthase, ndvC-like BRADO3757 15 COG5309 COG5309, Exo-beta-1,3-glucanase Carbohydrate transport and metabolism 146341256 Nonpathogen - hypothetical protein BRADO4332 1 None None None 146337981 Common - Putative ABC transporter (substrate binding protein) BRADO0873 66 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146340576 Common - putative transcription antitermination protein NusG BRADO3621 142 COG0250 NusG, Transcription antiterminator Transcription 146338619 Common - Putative ABC transporter (ATP binding protein) BRADO1547 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146337238 Common - putative ferric uptake regulation protein, FUR family. BRADO0064 118 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 146339145 Common - Aldehyde dehydrogenase family 7 member A1 homolog BRADO2102 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146341529 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4626 4 None None None 146342431 Common - putative transcriptional regulatory protein, LysR family BRADO5590 132 COG0583 LysR, Transcriptional regulator Transcription 146341418 Common topA DNA topoisomerase I BRADO4508 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 146337282 Common - hypothetical protein BRADO0109 14 COG5568 COG5568, Uncharacterized small protein Function unknown 146343697 Common - hypothetical protein; putative bacteriophage related protein BRADO6942 14 None None None 146338053 Nonpathogen - hypothetical protein BRADO0948 4 None None None 146339862 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2864 2 None None None 146338970 Common - Putative periplasmic binding ABC transporter protein, probable sugar binding precursor; putative signal peptide BRADO1914 33 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146338818 Common - putative transport protein (permease) BRADO1752 49 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 146339968 Nonpathogen - hypothetical protein BRADO2973 7 COG3904 COG3904, Predicted periplasmic protein Function unknown 146337185 Nonpathogen - hypothetical protein BRADO0010 8 COG1289 COG1289, Predicted membrane protein Function unknown 146343078 Common - Putative ABC transporter (ATP-binding protein) BRADO6270 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 146339240 Common - hypothetical protein; putative S-adenosyl-L-methionine-dependent methyltransferase; putative 3-demethylubiquinone-9 3-O-methyltransferase BRADO2206 123 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146343735 Common - putative Peptidase; Caspase-like BRADO6982 14 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339704 Common - hypothetical protein BRADO2701 80 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 146337573 Common - conserved hypothetical protein; plant iojap-related protein BRADO0428 194 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 146340569 Common - hypothetical protein; putative transcriptional activator, adenine-specific DNA methyltransferase domain. BRADO3613 23 COG4725 IME4, Transcriptional activator, adenine-specific DNA methyltransferase Signal transduction mechanisms / Transcription 146342039 Common - Putative short-chain dehydrogenase/reductase family protein BRADO5178 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146340536 Common - hypothetical protein BRADO3579 67 COG1432 COG1432, Uncharacterized conserved protein Function unknown 146339028 Common - Cytochrome b/c1 BRADO1977 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 146340997 Common ureF Urease accessory protein UreF BRADO4068 29 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 146340657 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase, related to short chain alcohol dehydrogenases BRADO3705 226 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146340644 Common - putative protozoan/cyanobacterial globin family; putative truncated hemoglobin protein trHb. BRADO3692 66 COG2346 COG2346, Truncated hemoglobins General function prediction only 146339429 Common - putative transport protein (MFS family) BRADO2415 214 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146340629 Common - putative transcriptional regulatory protein, AsnC/Lrp family; putative leucine-responsive regulatory protein. BRADO3677 146 COG1522 Lrp, Transcriptional regulators Transcription 146342361 Common leuD 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) BRADO5517 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 146343603 Common - putative acyl-CoA dehydrogenase BRADO6841 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146337475 Common - putative Lon family ATP-dependent protease BRADO0320 75 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 146342837 Nonpathogen - hypothetical protein; putative signal peptide BRADO6016 2 None None None 146337696 Common - conserved hypothetical protein; putative transmembrane protein BRADO0564 84 COG2962 RarD, Predicted permeases General function prediction only 146343516 Nonpathogen - hypothetical protein BRADO6748 2 None None None 146340271 Common - putative outer membrane bacterial lipocalin, blc-like BRADO3292 29 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 146340658 Common - putative AhpC/Tsa family protein, selenocysteine-containing oxidoreductase BRADO3706 25 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146341382 Common rpoZ DNA-directed RNA polymerase subunit omega BRADO4469 115 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 146343218 Common - putative Glutathione S-transferase BRADO6428 67 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342473 Common - Putative Sugar (D-ribose) ABC transporter (permease protein) BRADO5632 114 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146340548 Common - hypothetical protein BRADO3591 39 COG3247 HdeD, Uncharacterized conserved protein Function unknown 146339387 Common - putative phenylacetic acid degradation-related protein:Thioesterase superfamily BRADO2372 34 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146341094 Common - Putative ABC transporter (permease protein); putative ribose transport system BRADO4165 110 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146338161 Nonpathogen - hypothetical protein BRADO1058 1 None None None 146340562 Common - hypothetical protein; putative LexA, SOS-response transcriptional repressor domain fragment. BRADO3606 4 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 146342949 Common - Cytochrome C BRADO6132 56 COG3474 COG3474, Cytochrome c2 Energy production and conversion 146343623 Common - putative N-acyl-D-amino-acid deacylase family protein (D-aminoacylase) BRADO6862 81 COG3653 COG3653, N-acyl-D-aspartate/D-glutamate deacylase Secondary metabolites biosynthesis, transport, and catabolism 146337589 Common - putative oxidoreductase /dehydrogenase protein BRADO0445 156 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146342808 Nonpathogen - hypothetical protein BRADO5985 1 None None None 146342296 Common - hypothetical protein BRADO5451 24 None None None 146342284 Common nifK nitrogenase molybdenum-iron protein beta chain, nifK BRADO5438 52 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146343877 Common - conserved hypothetical protein; putative signal peptide; putative UPF0065 (bug) family protein BRADO7128 74 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 146341246 Common - putative methylisocitrate lyase or carboxyvinyl-carboxyphosphonate phosphorylmutase BRADO4322 89 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 146338691 Nonpathogen pufA Light harvesting 1 alpha subunit BRADO1623 5 None None None 146342091 Nonpathogen - hypothetical protein BRADO5234 1 None None None 146343082 Common - hypothetical protein BRADO6277 27 COG4731 COG4731, Uncharacterized protein conserved in bacteria Function unknown 146341307 Nonpathogen - hypothetical protein BRADO4388 11 None None None 146341336 Common - conserved hypothetical protein; putative basic FGF-repressed Zic binding protein homolog BRADO4420 22 COG5452 COG5452, Uncharacterized conserved protein Function unknown 146337287 Common - putative ABC transporter (ATP-binding protein) BRADO0114 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 146338744 Common phoU transcriptional repressor for high-affinity phosphate uptake BRADO1678 199 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 146341928 Common - Conserved hypothetical protein; putative Flagellin and related hook-associated protein BRADO5063 14 None None None 146342072 Common - Putative cyclase BRADO5212 34 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 146338673 Common hutU urocanate hydratase BRADO1605 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 146341428 Common - DNA gyrase subunit B GyrB (fragment) BRADO4519 203 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 146343187 Common - conserved hypothetical protein; putative lambda repressor-like DNA-binding domains BRADO6390 18 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 146337447 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO0287 3 None None None 146343326 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6552 1 None None None 146342350 Common hyuA N-methylhydantoinase A (Hydantoin utilization protein A) BRADO5506 115 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339910 Common - putative oxidoreductase BRADO2914 175 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146338282 Common - conserved hypothetical protein; putative signal peptide BRADO1186 18 COG5480 COG5480, Predicted integral membrane protein Function unknown 146340237 Common - putative transcriptional regulator, AraC/XylS family BRADO3256 27 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146342767 Common - Putative transport protein; putative permease of the drug/metabolite transporter (DMT) superfamily BRADO5941 146 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 146337651 Common - putative ABC transporter, ATP-binding protein BRADO0517 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146340016 Common - ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein BRADO3022 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338666 Common - Putative ABC transporter (ATP binding protein) BRADO1598 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146339657 Common - conserved hypothetical protein; putative signal peptide BRADO2650 168 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146337284 Common ptsN nitrogen regulatory protein BRADO0111 130 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 146342171 Common - putative manganese transport protein BRADO5321 111 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 146339166 Common - conserved hypothetical protein; putative aminohydrolase BRADO2124 16 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 146342288 Common sufE SufE protein probably involved in Fe-S center assembly BRADO5443 97 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 146341509 Common - putative ABC transporter, permease protein (fragment) BRADO4604 105 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340452 Common - aromatic amino acid aminotransferase BRADO3492 72 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146341739 Common - putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO4854 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337267 Common ihfB integration host factor subunit beta BRADO0094 203 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 146340975 Common - putative sec-independent protein secretion pathway component TatB BRADO4046 106 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 146337679 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase BRADO0546 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 146341161 Common - conserved hypothetical protein; putative Saccharopine dehydrogenase family protein BRADO4233 46 COG3268 COG3268, Uncharacterized conserved protein Function unknown 146341940 Common - hypothetical protein BRADO5076 56 COG0392 COG0392, Predicted integral membrane protein Function unknown 146343501 Common - putative transcriptional regulatory protein, LysR family BRADO6733 187 COG0583 LysR, Transcriptional regulator Transcription 146342405 Common - hypothetical protein BRADO5563 207 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 146341020 Common - putative Beta-lactamase family protein; putative 6-aminohexanoate-dimer hydrolase BRADO4091 77 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146341043 Common - Putative FMN-dependent alpha-hydroxy acid dehydrogenase family protein; putative Glycolate oxidase BRADO4114 111 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 146339796 Nonpathogen - hypothetical protein BRADO2797 1 None None None 146340867 Nonpathogen - hypothetical protein BRADO3932 1 None None None 146337265 Common trpF N-(5'-phosphoribosyl)anthranilate isomerase BRADO0092 196 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 146342608 Common - putative dimethylaniline monooxygenase (N-oxide-forming); putative exported protein BRADO5772 69 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146342976 Common - putative branched-chain amino acid ABC transporter (substrate-binding protein) BRADO6159 87 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342030 Common - putative dTDP-glucose 4,6-dehydratase BRADO5168 229 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 146337947 Nonpathogen - hypothetical protein BRADO0837 2 None None None 146338867 Common eda KHG/KDPG aldolase BRADO1806 123 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 146339079 Nonpathogen - hypothetical protein BRADO2033 1 None None None 146338301 Common purK Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) BRADO1205 193 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 146341627 Common - putative heavy metal efflux pump, HlyD family (CzcB-like) BRADO4730 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146343794 Common - conserved hypothetical protein, putative heparinase II/III-like domain BRADO7043 29 None None None 146338094 Common - putative Glutathione transferase BRADO0990 52 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146341818 Common hyi hydroxypyruvate isomerase BRADO4945 86 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 146337639 Common - putative cytochrome P450 family proteins BRADO0504 74 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146338034 Common - Putative epoxide hydrolase BRADO0927 77 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146340128 Common - putative 3-oxo-(acyl) acyl carrier protein reductase BRADO3143 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146338480 Common - hypothetical protein BRADO1397 35 None None None 146338982 Common - putative ribose ABC transporter, permease BRADO1929 89 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146339694 Common - putative transcriptional regulatory protein, AraC family BRADO2690 137 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146340681 Common - conserved hypothetical protein; putative signal peptide; putative ABC transporter substrate-binding protein BRADO3732 53 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342156 Nonpathogen - conserved hypothetical protein, putative membrane protein BRADO5306 3 None None None 146342532 Common - putative glutamate-1-semialdehyde 2, 1-aminomutase (GSA) (glutamate-1-semialdehyde aminotransferase) BRADO5694 235 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 146340493 Common - conserved hypothetical protein; putative alpha/beta hydrolase domain BRADO3535 87 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 146337929 Common cheB Chemotaxis Response Regulator protein CheB-glutamate methylesterase BRADO0819 211 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 146341750 Common - putative bacterial luciferase-like protein, putative alkanesulfonate monooxygenase BRADO4866 71 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146337671 Common mutS DNA mismatch repair protein BRADO0537 201 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 146340410 Nonpathogen - hypothetical protein BRADO3443 1 None None None 146343444 Common - putative two-component hybrid sensor histidine kinase and response regulator BRADO6673 218 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 146342290 Common sufD sufD, needed for fhuF Fe-S center production/stability BRADO5445 170 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 146340424 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3460 3 None None None 146342419 Common thyA thymidylate synthase BRADO5578 143 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 146343632 Nonpathogen - Putative cytochrome c BRADO6871 4 None None None 146340862 Nonpathogen - hypothetical protein BRADO3926 1 None None None 146342396 Common - conserved hypothetical protein; putative sulfatase family protein BRADO5553 16 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 146339989 Common - putative beta lactamase family protein; putative D-alanyl-D-alanine carboxypeptidase BRADO2994 129 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146343070 Nonpathogen - hypothetical protein BRADO6262 1 None None None 146343309 Nonpathogen - hypothetical protein; putative signal peptide BRADO6533 1 None None None 146340366 Nonpathogen - putative glutamine synthetase translation inhibitor GstI-like. BRADO3394 1 None None None 146342816 Nonpathogen - hypothetical protein BRADO5993 1 None None None 146338654 Nonpathogen - hypothetical protein BRADO1585 1 None None None 146342969 Common - putative transcriptional regulatory protein, LysR family. BRADO6152 91 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 146343628 Nonpathogen - MAPEG family protein (Membrane-associated protein in eicosanoid and glutathione metabolism) BRADO6867 10 COG3788 COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily General function prediction only 146339022 Common - putative Phosphoglycolate phosphatase BRADO1971 98 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 146339494 Nonpathogen - hypothetical protein BRADO2483 1 None None None 146340046 Common rpoB DNA-directed RNA polymerase subunit beta BRADO3054 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 146343164 Common - hypothetical protein BRADO6362 22 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 146338326 Common - putative transcriptional regulator, NnrR-like, Crp/Fnr family. BRADO1231 172 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146337403 Common - conserved hypothetical protein; putative methyltransferase BRADO0238 49 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 146341300 Nonpathogen - hypothetical protein BRADO4381 11 None None None 146341706 Common - putative transcriptional regulatory protein, LysR family BRADO4811 189 COG0583 LysR, Transcriptional regulator Transcription 146337533 Common - intracellular septation protein A BRADO0387 92 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 146341348 Nonpathogen - hypothetical protein BRADO4432 2 None None None 146337228 Common rbfA ribosome-binding factor A BRADO0054 127 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 146339668 Common - putative outer TolC membrane protein BRADO2662 129 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146341922 Nonpathogen flbT flagellar biosynthesis repressor FlbT BRADO5057 12 COG5443 FlbT, Flagellar biosynthesis regulator FlbT Cell motility and secretion 146338608 Common - conserved hypothetical protein (putative transcriptional regulatory protein AraC family) BRADO1536 113 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146339263 Common - putative exopolysaccharide polymerization protein BRADO2234 147 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 146338601 Common - tryptophan 2,3-dioxygenase BRADO1529 42 COG3483 TDO2, Tryptophan 2,3-dioxygenase (vermilion) Amino acid transport and metabolism 146338069 Common Hadh 3-hydroxyacyl-CoA dehydrogenase (short-chain) BRADO0964 235 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146340339 Common - hypothetical protein BRADO3366 6 None None None 146342137 Common - hypothetical protein BRADO5284 13 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 146340631 Common - putative acyl-CoA carboxylase, beta chain BRADO3679 145 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 146342987 Common - putative adenylate/guanylate cyclase BRADO6170 50 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146341596 Common - putative acetyltransferase BRADO4697 37 COG0456 RimI, Acetyltransferases General function prediction only 146342719 Common - putative transcriptional regulator with a putative HTH DNA-binding domain BRADO5886 45 COG1476 COG1476, Predicted transcriptional regulators Transcription 146342080 Common - putative pilus assembly protein cpaE BRADO5221 35 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 146342621 Common - hypothetical protein BRADO5786 13 None None None 146342647 Common - putative glycoside hydrolase, family 15 BRADO5814 69 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 146337562 Common atpA F0F1 ATP synthase subunit alpha BRADO0417 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 146341793 Common cobO Cob(I)yrinic acid a,c-diamide adenosyltransferase BRADO4912 142 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 146343720 Common - Putative Metallo-beta-lactamase family protein BRADO6967 78 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146343843 Common - putative spermidine/putrescine ABC transporter (Substrate binding protein) BRADO7093 71 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146338113 Nonpathogen - hypothetical protein BRADO1009 2 None None None 146340417 Common - hypothetical protein BRADO3453 8 COG2331 COG2331, Uncharacterized protein conserved in bacteria Function unknown 146343425 Common - putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO6654 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146338433 Common - putative transcriptional regulatory protein, GntR family, with a PLP-dependent aminotransferase domain BRADO1348 151 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 146339375 Nonpathogen - hypothetical protein; putative signal peptide BRADO2357 5 None None None 146341449 Common - putative Transcriptional regulatory protein, AraC/XylS family BRADO4540 62 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146340054 Common fusA elongation factor G BRADO3063 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 146343386 Common - putative sugar kinase (ribulo-/ribitol kinase) BRADO6615 153 COG1069 AraB, Ribulose kinase Energy production and conversion 146340261 Common radA DNA repair protein RadA BRADO3282 218 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 146339397 Common - conserved hypothetical protein; putative transcriptional regulator, PadR-like family BRADO2382 73 COG1695 COG1695, Predicted transcriptional regulators Transcription 146337363 Common trmE tRNA modification GTPase TrmE BRADO0196 217 COG0486 ThdF, Predicted GTPase General function prediction only 146342143 Nonpathogen - hypothetical protein; putative signal peptide BRADO5290 1 COG4298 COG4298, Uncharacterized protein conserved in bacteria Function unknown 146339413 Nonpathogen cyoD Cytochrome O ubiquinol oxidase protein subunit IV BRADO2398 1 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 146337930 Common cheR Chemotaxis protein methyltransferase BRADO0820 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 146339509 Common - putative cytochrome P450 BRADO2499 92 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146341180 Nonpathogen - hypothetical protein BRADO4253 1 None None None 146341405 Common - conserved hypothetical protein; putative cyclase BRADO4495 37 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 146343158 Common - putative FAD-dependent dehydrogenase BRADO6356 80 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 146343835 Common - L-sorbosone dehydrogenase BRADO7085 63 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 146339891 Common groES co-chaperonin GroES BRADO2893 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 146342515 Common - putative outer membrane receptor; putative iron transport (COG1629) BRADO5677 47 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 146338712 Nonpathogen puhA Reaction center protein H chain (Photosynthetic reaction center H subunit) BRADO1645 9 None None None 146339773 Common - putative nitrate ABC transporter (ATP-binding protein) (ntrC/D-like protein) BRADO2773 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146341420 Common - hypothetical protein BRADO4510 27 COG5349 COG5349, Uncharacterized protein conserved in bacteria Function unknown 146338339 Common - hypothetical protein BRADO1247 6 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 146339614 Common - hypothetical protein BRADO2606 50 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 146341189 Common - conserved hypothetical protein; MoxR-like ATPases domain BRADO4262 177 COG0714 COG0714, MoxR-like ATPases General function prediction only 146337813 Common - acyl-CoA synthetase BRADO0692 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340806 Common - putative permeases of the major facilitator superfamily BRADO3865 113 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 146337456 Common - conserved hypothetical protein; putative signal peptide;putative HemY porphyrin biosynthesis protein BRADO0299 27 COG3898 COG3898, Uncharacterized membrane-bound protein Function unknown 146338530 Common - putative metalloendopeptidase BRADO1449 117 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 146340070 Common rpsN 30S ribosomal protein S14 BRADO3079 189 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 146340622 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3669 1 None None None 146340095 Common - putative transcriptional regulatory protein, LacI family BRADO3104 126 COG1609 PurR, Transcriptional regulators Transcription 146337963 Common - Putative Murein hydrolase export regulator, LrgB family protein BRADO0855 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 146340913 Common kaiC circadian clock protein KaiC BRADO3982 127 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 146337412 Common - putative quinone oxidoreductases (NADPH) and Zn-dependent alcohol dehydrogenases BRADO0250 190 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146338123 Common - putative Pilus assembly protein cpaC; putative signal peptide BRADO1019 137 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 146342233 Common fixB protein FixB; electron transfer flavoprotein alpha chain BRADO5385 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 146341894 Common flgC flagellar basal body rod protein FlgC BRADO5028 125 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 146338273 Nonpathogen - hypothetical protein BRADO1177 1 None None None 146338537 Common - hypothetical protein BRADO1457 45 COG3287 COG3287, Uncharacterized conserved protein Function unknown 146341365 Common cpo non-heme chloroperoxidase (Chloride peroxidase) (CPO-P) (Chloroperoxidase P) BRADO4449 85 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341576 Common - 3-oxoacyl-(acyl carrier protein) synthase II BRADO4677 182 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337906 Nonpathogen - hypothetical protein BRADO0794 1 COG3904 COG3904, Predicted periplasmic protein Function unknown 146339384 Nonpathogen - hypothetical protein BRADO2368 1 None None None 146339095 Nonpathogen - hypothetical protein; putative chemotaxis protein BRADO2049 9 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337520 Common leuC isopropylmalate isomerase large subunit BRADO0374 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 146342900 Common - Putative Pseudouridine synthase, Rsu:RNA-binding S4:Pseudouridine synthase BRADO6081 205 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 146337458 Common - putative UROPORPHYRINOGEN-III synthase BRADO0301 23 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 146338701 Common - light harvesting pigment Major Facilitator Family (MFS) transporter, Bch2-like BRADO1633 23 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 146339116 Common deoB phosphopentomutase BRADO2070 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 146339544 Common - putative phosphoglycerate dehydrogenase BRADO2535 230 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146343812 Nonpathogen - hypothetical protein; putative permease BRADO7061 1 None None None 146342569 Nonpathogen - putative bacterioferritin-associated ferredoxin (bfd-like) BRADO5732 6 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 146343796 Common - hypothetical protein, putative glycosidase BRADO7045 12 COG3693 XynA, Beta-1,4-xylanase Carbohydrate transport and metabolism 146342025 Nonpathogen - hypothetical protein BRADO5162 1 None None None 146340196 Common - putative AAA ATPase BRADO3213 91 COG0714 COG0714, MoxR-like ATPases General function prediction only 146340465 Common - tricarballylate dehydrogenase BRADO3505 61 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 146340892 Common - putative ABC transporter, permease protein BRADO3958 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146341598 Common cysS cysteine tRNA synthetase (Cysteine--tRNA ligase) BRADO4699 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146341752 Common - Putative O-methyltransferase BRADO4868 75 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 146340677 Common - hypothetical protein BRADO3728 42 COG4102 COG4102, Uncharacterized protein conserved in bacteria Function unknown 146341813 Nonpathogen - hypothetical protein BRADO4938 3 None None None 146341565 Common - putative HspC2 heat shock protein BRADO4666 148 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 146342349 Common - Putative Isochorismatase family protein BRADO5505 100 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 146337756 Common cspA Cold shock protein, DNA binding BRADO0631 170 COG1278 CspC, Cold shock proteins Transcription 146343019 Common - Putative transposase (Fragment) BRADO6205 21 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342835 Nonpathogen - hypothetical protein; putative signal peptide BRADO6014 4 None None None 146338153 Common - hypothetical protein; putative signal peptide BRADO1050 29 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 146338718 Common hemA 5-aminolevulinate synthase BRADO1651 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 146340740 Common - sulfite reductase BRADO3794 99 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 146340162 Common - putative thioredoxin-like protein; SoxW precursor BRADO3178 16 COG2143 COG2143, Thioredoxin-related protein Posttranslational modification, protein turnover, chaperones 146340794 Nonpathogen - hypothetical protein; putative membrane protein BRADO3853 1 None None None 146338649 Common - putative oligopeptide ABC transporter (ATP binding protein) BRADO1580 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342696 Common ureC urease subunit alpha BRADO5863 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 146337553 Common sucB dihydrolipoamide acetyltransferase BRADO0407 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 146338866 Common kdgK ketodeoxygluconokinase BRADO1805 167 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 146340361 Common - hypothetical protein; putative hydrolase SGNH-family. BRADO3389 9 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 146340058 Common rplD 50S ribosomal protein L4 BRADO3067 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 146342639 Common ycgB hypothetical protein BRADO5804 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 146337278 Common - Putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpA-like protein BRADO0105 143 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146340286 Common rpsF 30S ribosomal protein S6 BRADO3309 179 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 146338636 Common kdgD 5-dehydro-4-deoxyglucarate dehydratase BRADO1565 223 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 146339851 Nonpathogen - hypothetical protein BRADO2853 1 None None None 146340848 Common - putative amino acid ABC transport, permease protein BRADO3911 175 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 146341952 Common - putative Permease of the major facilitator superfamily; putative 3-phenylpropionic acid transporter BRADO5088 69 None None None 146342375 Common - putative Beta-lactamase BRADO5532 96 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146343434 Common - putative iron-sulfur-binding protein, subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase (YagT-like) BRADO6663 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146342391 Common - Putative ABC transporter (permease protein) BRADO5548 176 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146341549 Common - conserved hypothetical protein; putative peptidase family M50, putative membrane protein BRADO4647 82 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 146343702 Nonpathogen - Conserved hypothetical protein; putative excisionase. BRADO6947 2 None None None 146341263 Common - conserved hypothetical protein; putative ribonucleotide reductase BRADO4339 12 None None None 146340422 Common - hypothetical protein BRADO3458 38 COG3750 COG3750, Uncharacterized protein conserved in bacteria Function unknown 146340470 Common dctA C4-dicarboxylate transport protein BRADO3510 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 146337845 Common - Conserved hypothetical protein; putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains BRADO0726 186 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146341671 Common - putative iron-sulfur-binding protein, subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase BRADO4776 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146342268 Common fixU fixU nitrogen fixation protein BRADO5422 20 COG5554 NifU, Nitrogen fixation protein Secondary metabolites biosynthesis, transport, and catabolism 146337618 Nonpathogen - hypothetical protein BRADO0480 1 None None None 146343825 Common - putative Virulence factor MviN-like protein BRADO7074 64 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 146339513 Common - ABC transporter permease protein; putative dipeptide transport protein BRADO2503 221 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146343564 Common - Putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO6802 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146338708 Common bchH magnesium chelatase subunit H BRADO1641 89 COG1429 CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases Coenzyme metabolism 146342245 Common - putative glutaredoxin family protein BRADO5399 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 146339085 Nonpathogen - hypothetical protein BRADO2039 5 None None None 146343801 Nonpathogen - conserved hypothetical protein; putative S-adenosyl-L-methionine-dependent (SAM)-methyltransferase BRADO7050 15 COG4627 COG4627, Uncharacterized protein conserved in bacteria Function unknown 146342623 Common gpx glutathione peroxidase BRADO5788 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 146341643 Nonpathogen - hypothetical protein BRADO4747 1 None None None 146337680 Common - hypothetical protein; putative GMP reductase domain BRADO0547 7 None None None 146340077 Common secY preprotein translocase subunit SecY BRADO3086 216 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 146341853 Common gcvH Glycine cleavage system H-protein BRADO4983 184 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 146339250 Nonpathogen - hypothetical protein; putative signal peptide BRADO2219 1 None None None 146342224 Common - Thioredoxin peroxidase (AhpC, Alkyl hydroperoxide reductase) BRADO5376 206 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 146341636 Common - conserved hypothetical protein; putative TonB-dependent receptor (Outer membrane siderophore receptor) precursor BRADO4739 107 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 146341791 Common - Conserved hypothetical protein; putative HupE/UreJ protein BRADO4910 7 COG2370 HupE, Hydrogenase/urease accessory protein Posttranslational modification, protein turnover, chaperones 146339920 Common - putative ABC transporter (substrate-binding protein) BRADO2924 187 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146341078 Nonpathogen - putative outer-membrane protein. BRADO4149 9 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146339459 Nonpathogen - nitrogen fixation protein fixS BRADO2445 1 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 146339978 Common - conserved hypothetical protein; putative NifU-like N-ter domain BRADO2983 86 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 146343820 Common - conserved hypothetical protein, putative Acyl-CoA N-acyltransferase BRADO7069 4 None None None 146338893 Nonpathogen - conserved hypothetical protein; putative histidine-containing phosphotransfer domain, HPT domain BRADO1832 1 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 146337704 Common ptsP Phosphoenolpyruvate-protein phosphotransferase BRADO0573 234 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 146339816 Nonpathogen - hypothetical protein; putative signal peptide BRADO2817 1 None None None 146338102 Common - Putative transcriptional regulatory protein, LysR family BRADO0998 107 COG0583 LysR, Transcriptional regulator Transcription 146343473 Common coxG cytochrome C oxidase assembly protein BRADO6703 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 146342176 Nonpathogen - hypothetical protein BRADO5326 1 None None None 146342873 Common cspA Cold shock protein, DNA binding BRADO6053 180 COG1278 CspC, Cold shock proteins Transcription 146337733 Common - conserved hypothetical protein; putative exported protein; putative transcriptiona regulatory protein at C-terminal BRADO0605 56 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 146338738 Nonpathogen - hypothetical protein BRADO1671 2 None None None 146342321 Nonpathogen - hypothetical protein BRADO5476 6 None None None 146338019 Common - putative secretion protein (HlyD family); putative Proteases secretion protein BRADO0912 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 146339518 Common - putative ATP-binding protein of oligopeptide ABC transporter BRADO2508 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146337244 Nonpathogen - conserved hypothetical protein; Putative signal peptide; putative Peptidoglycan binding domain protein BRADO0070 10 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146341210 Common - hypothetical protein BRADO4284 32 COG4529 COG4529, Uncharacterized protein conserved in bacteria Function unknown 146342592 Common - putative sensor histidine kinase with a response regulator receiver domain BRADO5755 213 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146341157 Common - Putative Polysaccharide biosynthesis, transport Protein BRADO4229 82 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 146338293 Common pntA2 nicotinamide nucleotide transhydrogenase, subunit alpha2 BRADO1197 117 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 146340618 Common - putative glutathione S-transferase BRADO3663 101 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146339555 Common - putative ABC transporter substrate-binding protein BRADO2546 28 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 146342649 Common - putative trehalose synthase (Maltose alpha-D-glucosyltransferase)(treS-like) BRADO5816 167 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 146339054 Common - putative bacteriophytochrome BRADO2008 58 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 146343785 Common - putative Glycosyl transferase, group 2 BRADO7033 63 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 146339170 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2129 1 None None None 146340247 Common - putative tetracycline-efflux transporter BRADO3268 195 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146341492 Common - Putative carbon-monoxide dehydrogenase small subunit, coxS-like protein BRADO4585 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146342271 Common iscA Iron-binding protein IscA (iron-sulfur cluster assembly protein) BRADO5425 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 146341171 Common - Putative ABC transporter (substrate-binding protein) BRADO4244 84 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 146343255 Common - conserved hypothetical protein; putative signal peptide BRADO6475 11 None None None 146339980 Common hisI phosphoribosyl-AMP cyclohydrolase BRADO2985 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 146343061 Common - putative Short-chain dehydrogenase/reductase family protein BRADO6253 12 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146342990 Common - Putative component of multidrug efflux pump, acrB/acrD/acrF family BRADO6173 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146341581 Common - hypothetical protein BRADO4682 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146343786 Common - Conserved hypothetical protein; putative TPR repeats; putative Beta-lactamase BRADO7034 108 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146338464 Common - hypothetical protein BRADO1381 15 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146340252 Common - hypothetical protein BRADO3273 5 None None None 146341112 Common nuoD NADH dehydrogenase subunit D BRADO4183 192 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 146341926 Nonpathogen - hypothetical protein BRADO5061 8 None None None 146339303 Nonpathogen - carboxysome peptide B BRADO2279 7 COG4576 CcmL, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 146342722 Nonpathogen - hypothetical protein BRADO5891 1 None None None 146337435 Common ppa inorganic pyrophosphatase BRADO0275 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 146340324 Common - putative transcriptional regulatory protein, LysR family BRADO3350 130 COG0583 LysR, Transcriptional regulator Transcription 146342852 Common coxC carbon monoxide dehydrogenase, coxC signalling protein BRADO6032 58 COG3300 COG3300, MHYT domain (predicted integral membrane sensor domain) Signal transduction mechanisms 146340951 Common - hypothetical protein BRADO4022 37 COG5473 COG5473, Predicted integral membrane protein Function unknown 146343293 Common - putative Class I peptide chain release factor domain protein BRADO6515 210 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 146340103 Common - putative acetyltransferase BRADO3112 96 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146339453 Common ccoO cytochrome-c oxidase fixO chain BRADO2439 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 146341718 Nonpathogen - hypothetical protein; putative signal peptide BRADO4823 2 None None None 146343364 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6592 1 None None None 146343055 Common - hypothetical protein BRADO6246 20 COG5338 COG5338, Uncharacterized protein conserved in bacteria Function unknown 146343008 Nonpathogen - hypothetical protein; putative Lanthionine synthetase C-like protein BRADO6193 3 None None None 146340883 Common - putative intracellular proteinase BRADO3949 168 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 146342117 Common - putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein BRADO5263 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146338711 Common lhaA photosynthetic complex (LH1) assembly protein LhaA, Major Facilitator Superfamily (MFS) transporter BRADO1644 23 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146342796 Common aatA aspartate aminotransferase BRADO5973 237 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 146337199 Common - hypothetical protein; putative dioxygenase, PhyH family BRADO0025 11 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 146338147 Common ureF Urease accessory protein UreF BRADO1044 82 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 146340168 Common - putative sulfite oxidase (soxC) BRADO3184 84 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 146342471 Common - conserved hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein BRADO5630 26 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146338896 Nonpathogen - hypothetical protein BRADO1835 1 None None None 146337770 Nonpathogen - hypothetical protein BRADO0647 4 None None None 146340038 Common - putative preprotein translocase secE subunit BRADO3046 11 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 146338254 Common - Glyoxalase family protein BRADO1158 70 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 146342999 Nonpathogen - hypothetical protein BRADO6183 1 None None None 146339612 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2604 1 None None None 146338134 Common - Putative branched-chain amino acid ABC transporter (substrate-binding protein) BRADO1031 106 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146341132 Common - conserved hypothetical protein; YjeF-related protein; Putative kinase, ribokinase-like superfamily BRADO4203 210 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 146343315 Nonpathogen - hypothetical protein BRADO6540 2 None None None 146337530 Common - putative MiaB-like tRNA modifying enzyme BRADO0384 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 146339115 Common - putative NAD-dependent epimerase/dehydratasen; putative UDP-glucose 4-epimerase BRADO2069 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146340316 Nonpathogen - hypothetical protein BRADO3339 2 None None None 146337314 Nonpathogen - hypothetical protein BRADO0145 9 None None None 146337510 Common - putative citrate lyase beta chain (Citrase beta chain) (Citrate (pro-3S)-lyase beta chain) (Citryl-CoA lyase subunit) (citE) BRADO0361 110 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 146343242 Common - hypothetical protein BRADO6462 48 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 146337798 Common - Putative TRAP-dicarboxylate transporter, periplasmic component (DctP subunit) BRADO0677 97 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 146342849 Common coxL Carbon monoxide dehydrogenase large chain BRADO6029 113 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146339858 Common - conserved hypothetical protein with VWA domain containing CoxE-like protein BRADO2860 46 COG3552 CoxE, Protein containing von Willebrand factor type A (vWA) domain General function prediction only 146340560 Nonpathogen - hypothetical protein BRADO3604 1 None None None 146341178 Common - conserved hypothetical protein; putative Caspase-like domain (peptidase) BRADO4251 18 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146338422 Common carA carbamoyl phosphate synthase small subunit BRADO1337 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 146339727 Common - Putative Flp/Fap pilin component BRADO2725 9 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 146338906 Nonpathogen - hypothetical protein BRADO1846 4 None None None 146343378 Common - putative 3-hydroxyisobutyrate dehydrogenase BRADO6607 166 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146340230 Common - putative acyl-CoA carboxylase biotin-carrying subunit; alpha chain BRADO3249 238 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 146342437 Common - Putative branched-chain amino acid ABC transporter (permease protein) BRADO5596 161 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146342931 Nonpathogen - conserved hypothetical protein; putative Methyl-accepting chemotaxis protein BRADO6112 8 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146343745 Common - putative Transcriptional regulator, GntR family BRADO6992 115 COG1802 GntR, Transcriptional regulators Transcription 146340710 Nonpathogen - hypothetical protein BRADO3762 2 None None None 146338799 Common - conserved hypothetical protein; putative membrane protein; putative Cytochrome c region BRADO1733 37 COG3748 COG3748, Predicted membrane protein Function unknown 146340960 Common - putative dioxygenase; putative taurine dioxygenase BRADO4031 39 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146340042 Common - putative glyoxylate reductase (Glycolate reductase) BRADO3050 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 146340122 Common - Methylmalonate-semialdehyde dehydrogenase BRADO3137 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146340948 Common - hypothetical protein BRADO4019 41 COG2388 COG2388, Predicted acetyltransferase General function prediction only 146341712 Common - putative glycosyltransferase (family 2) BRADO4817 44 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146340749 Common fusA protein chain elongation factor EF-G, GTP-binding BRADO3806 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 146342745 Common napB periplasmic nitrate reductase, small subunit diheme cytochrome c (napB) BRADO5917 37 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 146338272 Common omp16 Outer membrane lipoprotein omp16 precursor (peptidoglycan-associated lipoprotein) BRADO1176 154 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146338176 Common - conserved hypothetical protein with SCP/PR1 domains; putative signal peptide BRADO1074 46 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 146339403 Common - putative metal-dependent hydrolase; putative amidohydrolase BRADO2388 37 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 146341735 Common - hypothetical protein BRADO4842 17 COG3805 DodA, Aromatic ring-cleaving dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 146337539 Common acnA aconitate hydratase BRADO0393 223 COG1048 AcnA, Aconitase A Energy production and conversion 146343118 Common exbB biopolymer transport protein BRADO6315 147 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 146339228 Nonpathogen - putative general secretion pathway protein I; putative signal peptide BRADO2194 4 None None None 146340137 Nonpathogen - hypothetical protein BRADO3152 3 None None None 146341513 Nonpathogen - hypothetical protein BRADO4610 3 None None None 146339200 Common - putative Nucleoside 2-deoxyribosyltransferase BRADO2160 19 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 146339734 Common cycH Cytochrome c-type biogenesis protein cycH BRADO2732 51 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 146340368 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3396 4 None None None 146340936 Common - putative outer-membrane protein, putative secreted protein BRADO4007 22 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146342465 Common - conserved hypothetical protein; putative Peptidoglycan-binding LysM domain BRADO5624 7 None None None 146339202 Common xseB exodeoxyribonuclease VII small subunit BRADO2164 144 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 146340827 Common - hypothetical protein BRADO3890 3 None None None 146342894 Common - Putative Lactoylglutathione lyase BRADO6075 116 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146342642 Common - bifunctional transaldolase/phosoglucose isomerase BRADO5809 195 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 146343138 Common - conserved hypothetical protein; putative [NiFe]-hydrogenase/urease accessory HupE/UreJ family protein. BRADO6336 39 COG2370 HupE, Hydrogenase/urease accessory protein Posttranslational modification, protein turnover, chaperones 146337345 Common - putative methyltransferase BRADO0178 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 146338023 Common - hypothetical protein BRADO0916 3 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 146339234 Nonpathogen - putative permease protein; putative membrane protein BRADO2200 2 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 146341454 Common clpA ATP-dependent specificity subunit of clpA-clpP serine protease BRADO4545 219 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 146339173 Common - putative 2-aminoadipate transaminase BRADO2132 218 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 146340044 Common rplJ 50S ribosomal protein L10 BRADO3052 211 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 146343424 Common - putative transcriptional regulatory protein, LysR family BRADO6653 175 COG0583 LysR, Transcriptional regulator Transcription 146337550 Common sucC succinyl-CoA synthetase subunit beta BRADO0404 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 146342907 Common purD phosphoribosylamine--glycine ligase BRADO6088 233 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 146339828 Nonpathogen - hypothetical protein; putative signal peptide BRADO2829 1 None None None 146342920 Common - hypothetical protein BRADO6101 9 None None None 146338199 Common oppF Oligopeptide transport protein (ABC superfamily, ATP-binding protein) BRADO1097 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146339236 Common - putative aldo/keto reductase BRADO2202 138 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146342790 Common - putative haemagglutinin-like (or adhesin-like) with a signal peptide and a putative subtilisin-like serine protease domain BRADO5967 124 None None None 146339883 Nonpathogen - hypothetical protein BRADO2885 1 None None None 146340033 Common - Putative short-chain dehydrogenase/reductase SDR family protein. BRADO3041 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342425 Common fumC fumarate hydratase BRADO5584 222 COG0114 FumC, Fumarase Energy production and conversion 146343161 Common - putative low-affinity inorganic phosphate transport protein (PiT family) BRADO6359 161 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 146343353 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6580 1 None None None 146339180 Common alkK acyl-CoA synthetase BRADO2140 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146340209 Common - putative TRAP-type C4-dicarboxylate transport system, small permease component BRADO3227 11 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 146341317 Common - amidase BRADO4399 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146338472 Common - hypothetical protein; partial homology to DNA segregation ATPase FtsK/SpoIIIE and related proteins BRADO1389 197 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 146338067 Common - enoyl-CoA hydratase BRADO0962 175 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146339255 Common - Putative Biopolymer transport protein, ExbB/TolQ family BRADO2226 55 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 146338400 Nonpathogen - hypothetical protein; putative signal peptide BRADO1314 1 COG4915 XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein General function prediction only 146337523 Common rimM 16S rRNA processing protein, putative function BRADO0377 184 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 146342685 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO5852 167 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146337865 Common - hypothetical protein; putative Outer membrane protein containing OmpA/MotB domain BRADO0750 167 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146340986 Common - conserved hypothetical protein, putative phosphoesterase MJ0912 type BRADO4057 75 COG0622 COG0622, Predicted phosphoesterase General function prediction only 146337884 Common - conserved hypothetical protein; putative RmuC family protein BRADO0769 144 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 146339758 Common - conserved hypothetical protein; putative signal peptide BRADO2758 14 None None None 146339223 Nonpathogen - hypothetical protein BRADO2188 1 None None None 146337785 Nonpathogen - hypothetical protein; putative RTX toxins and related Ca2+-binding proteins; putative glycine-rich protein BRADO0663 1 COG4907 COG4907, Predicted membrane protein Function unknown 146338251 Common - conserved hypothetical protein with a DGPF domain BRADO1155 24 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 146341803 Common - putative D-3-phosphoglycerate dehydrogenase (PGDH) BRADO4922 230 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146341900 Nonpathogen - conserved hypothetical protein; putative methyl-accepting chemotaxis protein BRADO5034 7 None None None 146343885 Common - Putative aldehyde dehydrogenase precursor BRADO7136 111 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146337895 Common - GTPase EngB BRADO0781 190 COG0218 COG0218, Predicted GTPase General function prediction only 146337366 Common - hypothetical protein BRADO0199 112 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 146343680 Common - hypothetical protein; putative RTX family exoprotein BRADO6923 175 None None None 146338621 Common - Putative ABC transporter (permease protein) BRADO1549 189 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 146343583 Common - putative dipeptide/oligopeptide/nickel ABC transporter, permease protein BRADO6821 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146341871 Common - hypothetical protein BRADO5003 16 None None None 146341770 Nonpathogen - hypothetical protein BRADO4887 1 None None None 146337748 Common - Putative Luciferase-like monooxygenase BRADO0622 114 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146341612 Common - conserved hypothetical protein; putative secreted protein BRADO4713 14 COG3184 COG3184, Uncharacterized protein conserved in bacteria Function unknown 146341504 Common - putative dipeptide ABC transporter, ATP-binding protein dppD (fragment) BRADO4599 234 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146342574 Nonpathogen - hypothetical protein BRADO5737 2 None None None 146337853 Common - PTS system permease (IIAMan), nitrogen regulatory IIA protein (fragment) BRADO0734 73 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 146342196 Common - hypothetical protein BRADO5348 46 COG3576 COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase General function prediction only 146339779 Common purQ phosphoribosylformylglycinamidine synthase I (FGAM synthase I) BRADO2779 229 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 146339533 Common - putative phenylacetic acid degradation NADH oxidoreductase paaE. BRADO2523 154 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 146338832 Common bam amidase BRADO1769 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146340822 Common - putative outer membrane protein tolC precursor BRADO3884 147 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146341789 Common - putative cobalamin synthesis protein cobW BRADO4908 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 146338488 Common - putative dehydrogenase/oxidase; molybdopterin binding protein BRADO1406 115 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146340878 Common - putative oxidoreductase, NAD(P)-binding domain BRADO3944 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146341462 Common panC pantothenate synthetase (Pantoate--beta-alanine ligase) BRADO4554 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 146340433 Nonpathogen - hypothetical protein BRADO3472 1 None None None 146341489 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO4582 151 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146341005 Common - Putative branched chain amino-acid ABC transporter (substrate binding protein); putative Leu/Ile/Val/Thr-binding protein BRADO4076 138 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146341608 Common - hypothetical protein BRADO4709 8 None None None 146339632 Nonpathogen - hypothetical protein BRADO2625 4 None None None 146343867 Nonpathogen - hypothetical protein BRADO7118 1 None None None 146339468 Common - putative formyl-coenzyme A transferase BRADO2455 114 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146342261 Common - putative NifZ protein (NifZ domain) BRADO5415 26 None None None 146338446 Common - hypothetical protein BRADO1362 13 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 146341769 Nonpathogen - hypothetical protein BRADO4886 1 None None None 146338171 Common cysH phosphoadenosine phosphosulfate reductase BRADO1069 147 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 146339273 Common - putative beta-lactamase BRADO2248 85 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146341932 Common - Putative FAD dependent oxidoreductase BRADO5067 79 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 146337959 Common - hypothetical protein BRADO0850 11 COG2268 COG2268, Uncharacterized protein conserved in bacteria Function unknown 146337875 Common - putative transcriptional regulatory protein, AsnC/Lrp family BRADO0760 153 COG1522 Lrp, Transcriptional regulators Transcription 146341230 Common - putative glyoxalase BRADO4306 7 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146338395 Common - conserved hypothetical protein, putative membrane protein BRADO1308 8 None None None 146337955 Nonpathogen - hypothetical protein BRADO0846 1 None None None 146338688 Common bchZ bacteriochlorophyllide reductase Z subunit BRADO1620 34 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146342953 Common - conserved hypothetical protein; TPR repeat precursor BRADO6136 46 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 146337542 Common pat phosphinothricin acetyltransferase (PPT N-acetyltransferase) BRADO0396 121 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146340011 Common - putative aldehyde dehydrogenase family protein BRADO3017 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146340478 Common - putative Glutathione-regulated potassium-efflux system protein BRADO3519 206 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 146341325 Common - putative amidase BRADO4407 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146338775 Nonpathogen - hypothetical protein BRADO1709 2 None None None 146342544 Nonpathogen - hypothetical protein BRADO5706 2 None None None 146339567 Common - conserved hypothetical protein; putative signal peptide BRADO2558 79 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146343267 Common argH argininosuccinate lyase BRADO6487 223 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 146338802 Common - putative xanthine dehydrogenase family protein; putative hypoxanthine oxidase BRADO1736 123 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146342751 Common - conserved hypothetical protein with a TPR motif and a caspase domain; putative signal peptide BRADO5923 99 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146343234 Common - putative alpha/beta-Hydrolases superfamily; putative 3-oxoadipate enol-lactonase BRADO6453 157 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341975 Common - Conserved hypothetical protein; EAL domain protein BRADO5111 161 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 146339770 Common - putative Thiosulfate sulfurtransferase (Rhodanese-like protein) BRADO2770 144 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146342235 Common nifW nitrogenase stabilizing/protective protein BRADO5388 21 None None None 146342540 Common - putative ABC branched-chain amino transporter, periplasmic binding protein BRADO5702 63 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146342814 Common - hypothetical protein BRADO5991 14 COG0730 COG0730, Predicted permeases General function prediction only 146342656 Common ligD ATP-dependent DNA ligase BRADO5823 88 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 146337504 Common leuB 3-isopropylmalate dehydrogenase BRADO0353 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 146340401 Common - putative histidine kinase with PAS/PAC motif. BRADO3434 91 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 146343613 Common - putative 5'-nucleotidase BRADO6851 132 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 146341740 Common - Putative branched-chain amino acid ABC transporter (ATP-binding protein) BRADO4855 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 146339026 Common - putative tRNA/rRNA methyltransferase BRADO1975 172 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 146338776 Nonpathogen - Coenzyme PQQ synthesis protein A (Pyrroloquinoline quinone biosynthesis protein A) BRADO1710 1 None None None 146338572 Common - Conserved hypothetical protein; putative nuclease BRADO1493 11 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 146338756 Common hupH hydrogenase expression/formation protein hupH BRADO1690 19 None None None 146337325 Nonpathogen - hypothetical protein BRADO0156 1 None None None 146343125 Nonpathogen - hypothetical protein BRADO6323 3 None None None 146343430 Nonpathogen - hypothetical protein BRADO6659 1 None None None 146341862 Nonpathogen - hypothetical protein BRADO4994 8 None None None 146340602 Nonpathogen - hypothetical protein; putative exported protein BRADO3647 1 None None None 146339032 Nonpathogen - hypothetical protein BRADO1983 1 None None None 146340734 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein BRADO3787 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 146342205 Common - putative transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain BRADO5357 136 COG2188 PhnF, Transcriptional regulators Transcription 146341984 Common - putative Multidrug resistance protein, emrB-like BRADO5120 204 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343419 Nonpathogen - hypothetical protein BRADO6648 1 None None None 146337902 Common - putative Thiamine-phosphate diphosphorylase BRADO0790 100 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 146340407 Common - putative glucose/sorbosone dehydrogenase; putative peptide signal BRADO3440 83 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 146339845 Common - putative two-component response regulatory protein. BRADO2847 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146338362 Nonpathogen - putative gas vesicle synthesis protein, GvpH-like BRADO1271 21 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 146342830 Nonpathogen - hypothetical protein BRADO6009 4 None None None 146343355 Common - putative Beta-(1-->2)glucan export ATP-binding protein (Attachment protein)(chvA) BRADO6582 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 146340208 Common - putative TRAP-type C4-dicarboxylate transport system, large permease component BRADO3226 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146340500 Common sufC SufC, related to ABC transporter associated with Fe-S cluster assembly (ATP-binding protein) BRADO3542 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 146340603 Nonpathogen - hypothetical protein; putative signal peptide BRADO3648 2 None None None 146342418 Common - Putative acetyltransferase family protein; putative spermidine/spermine acetyltransferase BRADO5577 79 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 146342704 Common - Putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO5871 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 146338055 Common - hypothetical protein BRADO0950 89 COG2378 COG2378, Predicted transcriptional regulator Transcription 146339286 Nonpathogen - hypothetical protein; putative transposase (fragment) BRADO2262 1 None None None 146340088 Common - Putative ABC transporter permease BRADO3097 177 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146339136 Common - hypothetical protein BRADO2090 13 COG2259 COG2259, Predicted membrane protein Function unknown 146342168 Nonpathogen - hypothetical protein BRADO5318 1 None None None 146343404 Common - hypothetical protein BRADO6633 33 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 146339342 Common - hypothetical protein BRADO2323 72 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146343875 Nonpathogen - hypothetical protein BRADO7126 4 None None None 146342577 Nonpathogen - hypothetical protein BRADO5740 3 None None None 146342726 Nonpathogen - putative flagellar hook length determination protein BRADO5895 8 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 146343261 Nonpathogen - putative transposase (fragment) BRADO6481 1 None None None 146339270 Common idhA Inositol 2-dehydrogenase BRADO2244 170 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146342454 Common - Conserved hypothetical protein; putative Metallo-beta-lactamase family protein BRADO5613 33 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 146340308 Common - putative ABC transporter, ATP-binding protein with duplicated ATPase domains BRADO3331 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 146337591 Nonpathogen - hypothetical protein BRADO0447 4 None None None 146341193 Common - putative transposase, probably encoded by an unidentified IS element protein BRADO4267 155 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 146342829 Common - translation-associated GTPase BRADO6008 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 146341544 Common - conserved hypothetical protein; putative transcriptional regulator (NmrA-like) BRADO4642 69 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146341149 Common - Conserved Hypothetical protein; putative CoA-binding domain protein BRADO4220 116 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 146337386 Common - Putative Sensor histidine kinase with PAS and Response regulator receiver domains BRADO0219 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146338334 Common - hypothetical protein; putative caspase domain BRADO1242 6 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339398 Common - putative multidrug efflux transporter (RND family,AcrB/AcrD/AcrF family) BRADO2383 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146341601 Common - putative glutamine-dependent NAD(+) synthetase (NadE-like) BRADO4702 118 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146342550 Common thiE thiamine phosphate pyrophosphorylase (thiamin phosphate synthase/diphosphorylase) BRADO5712 200 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 146339587 Common - enoyl-CoA hydratase BRADO2578 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146339218 Nonpathogen - hypothetical protein; putative signal peptide BRADO2183 1 None None None 146339629 Nonpathogen - hypothetical protein BRADO2622 1 None None None 146339662 Common - conserved hypothetical protein; putative signal peptide BRADO2655 140 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340747 Common - putative transcriptional regulator, AsnC/Lrp family BRADO3802 154 COG1522 Lrp, Transcriptional regulators Transcription 146342053 Common - putative CysN/CysC bifunctional enzyme: Sulfate adenylyltransferase (SAT) subunit 1 (N-terminal); Adenylyl-sulfate kinase (APS kinase)(C-terminal) BRADO5193 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 146338594 Common - Putative Outer membrane efflux protein; putative copper resistance protein B BRADO1521 18 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146338385 Nonpathogen - putative general secretion pathway protein I; putative signal peptide BRADO1297 4 None None None 146337302 Common - conserved hypothetical protein; putative iron-sulfur cluster binding protein BRADO0131 133 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 146340442 Common - putative bifunctional protein with a transcriptional regulator AraC/XylS family, and a Class I glutamine amidotransferase-like domain. BRADO3482 135 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146343106 Nonpathogen - hypothetical protein BRADO6303 3 None None None 146343133 Common - hypothetical protein BRADO6331 13 None None None 146338371 Common - hypothetical protein BRADO1280 40 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 146341540 Common - conserved hypothetical protein; putative Beta-lactamase BRADO4638 124 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146340156 Nonpathogen - hypothetical protein BRADO3171 1 None None None 146338378 Common - hypothetical protein; putative signal peptide BRADO1290 19 None None None 146341686 Common - putative sugar ABC transporter, permease protein; putative ribose ABC transporter rbsC-like BRADO4791 152 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 146338458 Common - putative Site-specific DNA-methyltransferase (adenine-specific) BRADO1375 71 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 146342163 Common - putative Formyl-coenzyme A transferase (Formyl-CoA transferase; carnitine dehydratase) BRADO5313 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 146342585 Common - putative ATPase, AAA family BRADO5748 93 COG0714 COG0714, MoxR-like ATPases General function prediction only 146342367 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5524 5 None None None 146340009 Common - putative transcriptional regulatory protein, LysR-family BRADO3015 166 COG0583 LysR, Transcriptional regulator Transcription 146337357 Common - hypothetical protein BRADO0190 15 COG5468 COG5468, Predicted secreted (periplasmic) protein Function unknown 146338202 Common - putative transcriptional regulatory protein, MarR family BRADO1101 63 COG1846 MarR, Transcriptional regulators Transcription 146341914 Nonpathogen fliX flagellar assembly regulator FliX BRADO5049 5 None None None 146341749 Common - putative Feruloyl esterase BRADO4865 21 COG0400 COG0400, Predicted esterase General function prediction only 146337436 Common - hypothetical protein BRADO0276 182 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 146337477 Common - hypothetical protein; putative exported protein BRADO0322 22 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146337624 Common - Putative oxidoreductase BRADO0489 159 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 146340468 Common - conserved hypothetical protein; putative exported protein BRADO3508 104 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 146342539 Common - putative Flp/Fap pilin component BRADO5701 4 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 146338304 Nonpathogen - hypothetical protein BRADO1208 4 None None None 146338999 Common - putative transposase BRADO1948 38 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 146343298 Common - conserved hypothetical protein; putative acetyltransferase BRADO6521 62 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146338248 Common - putative Transcriptional regulatory protein, TetR family BRADO1152 89 COG1309 AcrR, Transcriptional regulator Transcription 146343409 Common - hypothetical protein BRADO6638 21 None None None 146337970 Common - cytosine deaminase BRADO0862 76 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 146338637 Common - putative transcriptional regulatory protein, LysR family BRADO1566 190 COG0583 LysR, Transcriptional regulator Transcription 146342006 Common - Putative TonB-dependent receptor protein BRADO5143 113 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 146342430 Common - putative NAD(P)H dehydrogenase, quinone family BRADO5589 99 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 146338847 Common upp uracil phosphoribosyltransferase BRADO1786 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 146341105 Common nuoII NADH dehydrogenase subunit I BRADO4176 195 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 146337807 Common - putative AMP-dependent synthetase and ligase BRADO0686 222 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146338381 Common - putative General secretion pathway protein E (Type II traffic warden ATPase) BRADO1293 183 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 146337741 Common - citrate synthase 2 BRADO0613 194 COG0372 GltA, Citrate synthase Energy production and conversion 146342842 Common - Putative ABC transporter (substrate binding protein) BRADO6022 96 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146343546 Common - hypothetical protein BRADO6783 58 COG0392 COG0392, Predicted integral membrane protein Function unknown 146343373 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO6601 3 None None None 146343010 Nonpathogen - hypothetical protein BRADO6195 1 None None None 146340798 Common ntrY Nitrogen regulation protein BRADO3857 221 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 146338557 Common cheR chemotaxis protein methyltransferase BRADO1477 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 146337630 Common - conserved hypothetical protein with PAS, GGDEF and EAL domains; putative membrane protein BRADO0495 186 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146337996 Common - short chain dehydrogenase BRADO0889 199 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146341821 Nonpathogen - hypothetical protein BRADO4949 1 None None None 146338809 Common dppA Periplasmic dipeptide transport protein precursor (Dipeptide-binding protein) (DBP) (ABC transporter) BRADO1743 213 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146338181 Common - putative polysaccharide export protein, PST family BRADO1079 50 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 146341891 Common fliR flagellar biosynthesis protein FliR BRADO5025 129 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 146338564 Nonpathogen - hypothetical protein BRADO1485 2 COG4907 COG4907, Predicted membrane protein Function unknown 146338427 Common - hypothetical protein BRADO1342 20 COG3832 COG3832, Uncharacterized conserved protein Function unknown 146338144 Common ureC urease subunit alpha BRADO1041 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 146338928 Common vanR transcriptional regulatory protein, GntR family BRADO1868 127 COG1802 GntR, Transcriptional regulators Transcription 146339320 Common - Putative ferric siderophore receptor protein precursor; putative signal peptide BRADO2299 83 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 146337992 Common - conserved hypothetical protein; putative signal peptide BRADO0884 18 None None None 146338505 Nonpathogen - hypothetical protein BRADO1423 1 None None None 146341069 Common rpsB 30S ribosomal protein S2 BRADO4140 219 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 146339298 Common rbcL ribulose bisophosphate carboxylase BRADO2274 67 COG1850 RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit Carbohydrate transport and metabolism 146340216 Common - hypothetical protein BRADO3234 28 COG4852 COG4852, Predicted membrane protein Function unknown 146341224 Nonpathogen - hypothetical protein BRADO4300 1 None None None 146342414 Common - hypothetical protein BRADO5573 12 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 146343604 Common - hypothetical protein BRADO6842 17 None None None 146338109 Common - putative oligopeptide transport protein (ABC superfamily, membrane) BRADO1005 219 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 146337776 Common - putative acyl-CoA dehydrogenase BRADO0653 27 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146343277 Common - glutamyl-Q tRNA(Asp) synthetase BRADO6498 243 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 146343773 Common - conserved hypothetical protein; putative signal peptide BRADO7020 15 COG3672 COG3672, Predicted periplasmic protein Function unknown 146338672 Common hutH Histidine ammonia-lyase (Histidase) BRADO1604 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 146343592 Common - Putative ABC transporter, substrate-binding protein; putative sugar transporter BRADO6830 88 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146339745 Common glnE Glutamate-ammonia-ligase adenylyltransferase ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) BRADO2744 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 146338579 Common - hypothetical protein BRADO1501 26 COG5343 COG5343, Uncharacterized protein conserved in bacteria Function unknown 146343270 Common hbdA 3-hydroxybutyryl-CoA dehydrogenase BRADO6490 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 146338888 Common cheB Chemotaxis Response Regulator protein CheB-glutamate methylesterase BRADO1827 206 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 146342097 Nonpathogen - hypothetical protein BRADO5240 3 None None None 146341142 Common - conserved hypothetical protein; Predicted HD phosphohydrolase BRADO4213 31 COG4339 COG4339, Uncharacterized protein conserved in bacteria Function unknown 146342562 Nonpathogen - hypothetical protein BRADO5725 1 None None None 146340829 Common - putative NUDIX-like hydrolase (modular protein) BRADO3892 71 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146339642 Common - putative aminotransferase; putative ornithine aminotransferase BRADO2635 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 146341885 Nonpathogen - hypothetical protein BRADO5019 1 None None None 146343093 Common - putative transcriptional regulator Crp/Fnr family BRADO6288 153 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146337513 Common - hypothetical protein BRADO0364 6 None None None 146338826 Common - Putative Transcriptional regulatory protein, lysR family; Putative molybdenum transport regulator, modE BRADO1762 61 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 146343525 Common - putative gluconolactonase (gnl) BRADO6760 64 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 146340670 Common - hypothetical protein BRADO3720 23 COG3662 COG3662, Uncharacterized protein conserved in bacteria Function unknown 146342485 Nonpathogen - hypothetical protein BRADO5645 1 None None None 146337339 Common grpE Protein grpE (HSP-70 cofactor) BRADO0171 223 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 146342934 Common groEL chaperonin GroEL BRADO6115 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 146343329 Common nadE NAD synthetase BRADO6555 172 COG0171 NadE, NAD synthase Coenzyme metabolism 146337440 Common - glutamine amidotransferase BRADO0280 112 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 146338980 Common - putative ribose periplasmic binding protein BRADO1927 64 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146338070 Common - Putative 4-hydroxybenzoyl-CoA thioesterase BRADO0965 30 COG0824 FcbC, Predicted thioesterase General function prediction only 146337234 Common - conserved hypothetical protein; putative Outer membrane protein; Putative autotransporter domain protein BRADO0060 29 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 146338073 Common livF ABC transporter, ATP-binding protein; putative branched-chain amino acid transport protein BRADO0969 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343488 Common gst glutathione S-transferase BRADO6720 98 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146338617 Common - putative cobalamin synthesis protein cobW BRADO1545 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 146340581 Common - conserved hypothetical protein; putative phage terminase-like domain. BRADO3626 16 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 146339720 Common - putative penicillin-binding protein (mrcA-like) BRADO2718 202 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 146342716 Common - putative large subunit of glutamate synthase BRADO5883 206 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 146343025 Common - Putative response regulator receiver (CheY-like protein) BRADO6213 219 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343489 Nonpathogen - hypothetical protein BRADO6721 1 COG3668 ParE, Plasmid stabilization system protein General function prediction only 146340703 Common - Putative beta-(1-3)-glucosyl transferase, ndvB-like BRADO3754 105 COG5309 COG5309, Exo-beta-1,3-glucanase Carbohydrate transport and metabolism 146342601 Nonpathogen - hypothetical protein BRADO5764 3 None None None 146343713 Common - Putative carbon monoxide dehydrogenase medium subunit, coxM-like protein BRADO6959 88 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 146337658 Common - putative transcriptional regulatory protein, ArsR family BRADO0524 135 COG0640 ArsR, Predicted transcriptional regulators Transcription 146338766 Common hypE hydrogenase maturation protein HypE BRADO1700 119 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 146342970 Common - Putative NAD(P)-dependent oxidoreductase related to short-chain dehydrogenase/reductase family BRADO6153 234 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146337340 Common hrcA heat-inducible transcription repressor BRADO0172 148 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 146340691 Common - hypothetical protein BRADO3742 36 COG4094 COG4094, Predicted membrane protein Function unknown 146339860 Common - conserved hypothetical protein; putative XdhC/CoxI family protein BRADO2862 114 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 146337320 Common - putative Type III polyketide synthase; putative chalcone synthase BRADO0151 167 COG3424 BcsA, Predicted naringenin-chalcone synthase Secondary metabolites biosynthesis, transport, and catabolism 146343722 Common - hypothetical protein BRADO6969 90 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146341939 Common - conserved hypothetical protein; ferritin-like domain; yciF-like protein BRADO5074 36 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 146339804 Common - conserved hypothetical protein; putative Glutathione-dependent formaldehyde-activating enzyme (GFA) BRADO2805 58 COG3791 COG3791, Uncharacterized conserved protein Function unknown 146339312 Common - hypothetical protein; putative Chemotaxis methylesterase CheB (fragment) BRADO2288 5 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 146339423 Common - putative sulfur oxidation protein soxZ BRADO2409 28 None None None 146339678 Nonpathogen - hypothetical protein BRADO2673 3 None None None 146343635 Common - putative biotin carboxylase BRADO6875 232 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 146343718 Common fahA Fumarylacetoacetase BRADO6964 58 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146342689 Common - hypothetical protein BRADO5856 15 COG4091 COG4091, Predicted homoserine dehydrogenase Amino acid transport and metabolism 146339999 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3004 2 None None None 146338658 Common - Putative oligopeptide ABC transporter (ATP binding protein) BRADO1589 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146339896 Common - conserved hypothetical protein; putative membrane protein; putative nucleoside transporter domain BRADO2898 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 146342109 Common - putative high-affinity branched-chain amino acid transport system permease protein BRADO5253 147 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146341216 Nonpathogen - hypothetical protein BRADO4290 1 None None None 146342165 Nonpathogen - hypothetical protein BRADO5315 1 None None None 146338496 Nonpathogen - hypothetical protein BRADO1414 1 None None None 146337289 Common - hypothetical protein BRADO0116 20 COG5375 COG5375, Uncharacterized protein conserved in bacteria Function unknown 146338748 Common hupU uptake hydrogenase accessory protein HupU BRADO1682 76 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 146343678 Common - putative transcriptional regulatory protein, LysR family BRADO6921 156 COG0583 LysR, Transcriptional regulator Transcription 146340187 Common - sulfide-quinone reductase BRADO3203 88 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 146343331 Common - putative transcriptional regulator, TetR family BRADO6557 69 COG1309 AcrR, Transcriptional regulator Transcription 146341062 Common - putative Zinc metalloprotease BRADO4133 219 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 146337410 Common - putative pyruvate formate lyase activating enzyme 2 (yfgB) BRADO0246 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 146341777 Common - Putative Cob(II)yrinic acid a,c-diamide reductase, bluB BRADO4896 66 COG0778 NfnB, Nitroreductase Energy production and conversion 146337866 Common - hypothetical protein BRADO0751 9 None None None 146340908 Nonpathogen - hypothetical protein BRADO3977 2 None None None 146339068 Common ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; isopentenyl monophosphate kinase BRADO2022 173 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 146340383 Nonpathogen - hypothetical protein BRADO3416 5 None None None 146339132 Common - conserved hypothetical protein with an ATP-binding domain; putative circadian oscillation regulator KaiC homolog BRADO2086 89 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 146343220 Common ogt Putative methylated-DNA-protein-cystein methyltransferase (6-O-methylguanine-DNA methyltransferase) BRADO6430 211 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 146339097 Common - hypothetical protein BRADO2051 16 COG5451 COG5451, Predicted secreted protein Function unknown 146338263 Common - hypothetical protein BRADO1167 5 None None None 146339596 Common - Putative penicillin-binding protein 1A BRADO2588 192 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 146340712 Common - putative transporter, LysE family BRADO3764 118 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 146340176 Common - putative sulfurtransferase (Rhodanese) BRADO3192 36 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146343076 Common - Putative ABC transporter (substrate-binding protein) BRADO6268 176 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 146338582 Common - putative para-nitrobenzyl esterase BRADO1504 120 COG0657 Aes, Esterase/lipase Lipid metabolism 146343207 Nonpathogen - hypothetical protein BRADO6415 1 None None None 146338972 Common exbD uptake of enterobactin; tonB-dependent uptake of B colicins BRADO1917 137 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 146342037 Common - putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO5175 22 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146341767 Common flgE flagellar hook protein FlgE BRADO4884 125 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 146343173 Common - putative VirD4/TraG family protein BRADO6373 71 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 146340556 Common - putative phage integrase BRADO3600 16 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 146341254 Nonpathogen - hypothetical protein BRADO4330 1 None None None 146340634 Common - putative TRAP-type C4-dicarboxylate transporter, DctM subunit; putative membrane component. BRADO3682 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146339500 Common - dihydroxy-acid dehydratase BRADO2489 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146337662 Common - putative branched-chain amino acid ABC transporter, periplasmic binding protein BRADO0528 109 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146340625 Common - Putative Cold shock protein, DNA binding, CspA-like BRADO3673 157 COG1278 CspC, Cold shock proteins Transcription 146337330 Common - putative NADPH-dependent FMN reductase BRADO0161 105 COG0431 COG0431, Predicted flavoprotein General function prediction only 146341316 Common - hypothetical protein; putative DNA-directed DNA polymerase BRADO4398 193 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 146341550 Nonpathogen - hypothetical protein BRADO4648 3 None None None 146342301 Common - hypothetical protein BRADO5456 8 None None None 146343662 Common - 5'-methylthioadenosine phosphorylase BRADO6904 126 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 146342231 Common - putative Ferredoxin protein, FixX BRADO5383 36 COG2440 FixX, Ferredoxin-like protein Energy production and conversion 146342477 Common - Putative fatty-acid--CoA ligase (Acyl-CoA synthetase) BRADO5637 215 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146339565 Common - putative sensory transducer protein; putative signal peptide BRADO2556 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337969 Common - Carboxylate-amine ligase BRADO0861 71 COG2170 COG2170, Uncharacterized conserved protein Function unknown 146339147 Nonpathogen - hypothetical protein BRADO2105 1 None None None 146340567 Common - hypothetical protein BRADO3611 19 COG3750 COG3750, Uncharacterized protein conserved in bacteria Function unknown 146338125 Common - Putative type IV prepilin peptidase, cpaA BRADO1021 32 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146340931 Common ssb single-strand DNA-binding protein BRADO4002 207 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 146339382 Common - putative transcriptional regulatory protein, MarR family with a Acetyltransferase (GNAT) domain. BRADO2365 70 COG1846 MarR, Transcriptional regulators Transcription 146337329 Common pyrF Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) BRADO0160 160 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 146340585 Nonpathogen - hypothetical protein BRADO3630 1 None None None 146341081 Common lolD Lipoprotein-releasing system ATP-binding protein lolD BRADO4152 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 146341331 Common - putative transcriptional regulatory protein, MerR family BRADO4415 92 COG0789 SoxR, Predicted transcriptional regulators Transcription 146342889 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6069 5 None None None 146343618 Common - conserved hypothetical protein; putative TRAP-type uncharacterized transport system, periplasmic component BRADO6857 40 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 146342150 Common - putative transcriptional regulator with a cAMP binding domain, Crp family; putative nitrogen fixation regulation protein fixK BRADO5299 124 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146342356 Common - Putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein BRADO5512 143 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146343870 Common - putative ABC transporter (protein fusion consisting of two ATP-binding domains and permease) BRADO7121 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146338623 Common - oxidoreductase (Pyridine nucleotide-disulphide subunit) BRADO1551 63 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 146338099 Common metF 5,10-methylenetetrahydrofolate reductase BRADO0995 159 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 146341036 Common tpiA Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) BRADO4107 224 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 146338346 Nonpathogen - hypothetical protein BRADO1254 2 None None None 146341056 Common lpxB Lipid-A-disaccharide synthase BRADO4127 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 146337383 Common hisF imidazole glycerol phosphate synthase subunit HisF BRADO0216 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 146338031 Common - hypothetical protein BRADO0924 23 COG1633 COG1633, Uncharacterized conserved protein Function unknown 146338979 Common nemA N-ethylmaleimide reductase, FMN-linked BRADO1926 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 146337765 Common - putative transcriptional regulatory protein, CarD family BRADO0642 83 COG1329 COG1329, Transcriptional regulators, similar to M. xanthus CarD Transcription 146340894 Common - putative ABC transporter, ATP-binding protein BRADO3960 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 146343193 Common tnpR Transposon Tn21 resolvase BRADO6397 130 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 146337727 Common - Putative ABC transporter, substrate binding protein BRADO0599 89 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339917 Common - putative ABC transporter (permease protein); putative membrane protein BRADO2921 220 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146339101 Common - conserved hypothetical protein; putative pyrophosphatase BRADO2055 92 None None None 146340838 Common - conserved hypothetical protein; putative DTW domain BRADO3901 32 COG3148 COG3148, Uncharacterized conserved protein Function unknown 146340757 Common ugpC sn-glycerol 3-phosphate transport protein (ABC superfamily, atp_bind) BRADO3814 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 146342497 Common murC UDP-N-acetylmuramate--L-alanine ligase BRADO5658 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 146341273 Common - putative methane/phenol/toluene monooxygenase (A subunit, Alpha chain) BRADO4350 19 None None None 146342069 Common - putative Fumarylacetoacetate hydrolase family protein BRADO5209 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 146338165 Common - CysN/CysC bifunctional enzyme, ATP-sulfurylase large subunit and adenylyl sulfate kinase BRADO1063 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 146337739 Common - conserved hypothetical protein. BolA-like protein (fragment) BRADO0611 80 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 146338415 Common - putative membrane protein; permease family BRADO1330 63 COG2391 COG2391, Predicted transporter component General function prediction only 146337858 Common pckA phosphoenolpyruvate carboxykinase BRADO0741 98 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 146337575 Common proA gamma-glutamylphosphate reductase BRADO0430 187 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 146343196 Common - hypothetical protein; putative signal peptide BRADO6402 20 None None None 146342070 Common - putative Reverse transcriptase BRADO5210 15 None None None 146342185 Common - putative protective surface antigen precursor (Outer membrane protein D15) BRADO5335 155 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 146340145 Common - putative oxidoreductase subunit protein BRADO3160 106 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146340486 Common - putative metalloendopeptidase BRADO3528 193 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 146341924 Common - putative pyridoxal-dependent decarboxylase BRADO5059 106 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 146339124 Common - hypothetical protein; putative TPR repeat protein; putative BRADO2078 33 None None None 146339837 Common - putative serine/threonine protein kinase BRADO2838 147 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 146339546 Common - putative transcriptional regulatory protein, LysR family BRADO2537 190 COG0583 LysR, Transcriptional regulator Transcription 146340278 Common - putative alanine racemase (alr) BRADO3301 199 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 146341961 Nonpathogen - hypothetical protein BRADO5097 1 None None None 146342926 Common hisG ATP phosphoribosyltransferase BRADO6107 214 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 146342316 Common - hypothetical protein BRADO5471 14 None None None 146340313 Nonpathogen - Molybdenum storage protein alpha subunit (Mo storage protein alpha subunit) (MoSto alpha subunit) BRADO3336 28 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 146340780 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO3838 140 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146343227 Common - putative transposase IS66 family BRADO6437 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 146337730 Nonpathogen - hypothetical protein BRADO0602 1 None None None 146339507 Common - hypothetical protein BRADO2496 87 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146339729 Nonpathogen - hypothetical protein BRADO2727 2 None None None 146341694 Common - putative sugar ABC transporter, permease protein BRADO4799 162 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146339572 Common - hypothetical protein BRADO2563 109 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 146340352 Nonpathogen - hypothetical protein; putative PE-PGRS family protein (fragment) BRADO3379 1 COG5412 COG5412, Phage-related protein Function unknown 146339877 Common - conserved hypothetical protein; putative SAM-dependent methyltransferase domain BRADO2879 20 None None None 146340885 Common - hypothetical protein BRADO3951 8 None None None 146341352 Common hemB delta-aminolevulinic acid dehydratase BRADO4436 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 146338890 Common - conserved hypothetical protein; putative anti-sigma factor antagonist BRADO1829 19 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 146340263 Nonpathogen - hypothetical protein; putative signal peptide BRADO3284 2 None None None 146343857 Common - Conserved hypothetical protein; putative Carboxymuconolactone decarboxylase family protein BRADO7107 6 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 146338085 Common pimF Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase BRADO0981 177 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 146338874 Common - Dihydrodipicolinate synthase BRADO1813 196 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 146338811 Common - Putative ABC transporter (permease protein) BRADO1745 108 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 146337796 Common - putative blue (type 1) copper protein BRADO0675 11 COG3794 PetE, Plastocyanin Energy production and conversion 146341163 Common - putative TPR domain protein; putative O-GlcNAc transferase related protein BRADO4235 146 COG0457 NrfG, FOG: TPR repeat General function prediction only 146341197 Common ssuB putative sulfonate ABC transporter, ATP-binding protein BRADO4271 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146338805 Common dppF dipeptide transporter ATP-binding subunit BRADO1739 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 146343322 Nonpathogen - hypothetical protein BRADO6547 1 None None None 146343790 Nonpathogen - hypothetical protein BRADO7038 1 None None None 146338668 Common - Putative ABC transporter (substrate-binding protein) BRADO1600 98 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146337293 Common - putative TRAP-type C4-dicarboxylate transport system, large permease component (dctM subunit) BRADO0120 133 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 146342839 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6018 1 None None None 146338126 Nonpathogen - putative Flp/Fap pilin component BRADO1023 1 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 146343048 Common gltB Glutamate synthase [NADPH] large chain (NADPH-GOGAT) BRADO6238 202 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 146339798 Nonpathogen - conserved hypothetical protein; putative acyltransferase BRADO2799 5 None None None 146341013 Common pdhC branched-chain alpha-keto acid dehydrogenase subunit E2 BRADO4084 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 146340266 Nonpathogen - hypothetical protein; putative signal peptide BRADO3287 1 None None None 146340283 Common rplI 50S ribosomal protein L9 BRADO3306 214 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 146340118 Common - putative transmembrane transport protein of the MFS family, putative monocarboxylate permease BRADO3133 113 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146337272 Common - conserved hypothetical protein; conserved FYDLN motif BRADO0099 18 COG4530 COG4530, Uncharacterized protein conserved in bacteria Function unknown 146342363 Nonpathogen - hypothetical protein BRADO5519 1 None None None 146340761 Nonpathogen - hypothetical protein BRADO3818 2 None None None 146338707 Common bchB light-independent protochlorophyllide reductase subunit B BRADO1640 49 COG2710 NifD, Nitrogenase molybdenum-iron protein, alpha and beta chains Energy production and conversion 146341209 Common - putative oxidoreductase (AsfA-like), putative L-aspartate oxidase BRADO4283 9 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 146338518 Common - hypothetical protein BRADO1437 17 COG5338 COG5338, Uncharacterized protein conserved in bacteria Function unknown 146337254 Nonpathogen - hypothetical protein BRADO0081 3 None None None 146341200 Common - putative monooxygenase/flavin reductase-like, FMN-binding BRADO4274 123 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 146337493 Common - hypothetical protein BRADO0339 40 COG5360 COG5360, Uncharacterized protein conserved in bacteria Function unknown 146341408 Common - hypothetical protein BRADO4498 104 COG0679 COG0679, Predicted permeases General function prediction only 146337585 Common - putative ABC1 protein (chaperonin) BRADO0441 155 COG0661 AarF, Predicted unusual protein kinase General function prediction only 146339671 Common - RNA polymerase sigma factor BRADO2666 119 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146339870 Common - putative Adenylate cyclase BRADO2872 83 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146340730 Common qor quinone oxidoreductase, NADPH-dependent BRADO3783 175 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146341041 Common - putative signaling protein containing multidomains (PAS/GGDEF/EAL) BRADO4112 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146339465 Common - hypothetical protein BRADO2451 62 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 146337306 Common rpmI 50S ribosomal protein L35 BRADO0137 127 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 146341567 Common - putative transcriptional regulatory protein slyA-like, MarR family BRADO4668 103 COG1846 MarR, Transcriptional regulators Transcription 146340372 Common - conserved hypothetical protein; putative signal peptide BRADO3400 8 None None None 146339811 Nonpathogen - hypothetical protein BRADO2812 1 None None None 146343288 Common crtE Geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (Farnesyltranstransferase) BRADO6509 239 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 146341442 Common virR conserved hypothetical protein VirR BRADO4533 97 COG1720 COG1720, Uncharacterized conserved protein Function unknown 146340195 Nonpathogen - hypothetical protein BRADO3212 1 None None None 146340491 Common anmK anhydro-N-acetylmuramic acid kinase BRADO3533 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 146340865 Common - hypothetical protein BRADO3930 9 None None None 146343572 Common - putative cytochrome P450 BRADO6810 78 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146343380 Common - putative transcriptional regulatory protein, LacI family BRADO6609 126 COG1609 PurR, Transcriptional regulators Transcription 146338936 Nonpathogen - hypothetical protein BRADO1876 1 None None None 146341089 Common - conserved hypothetical protein; putative signal peptide BRADO4160 81 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 146339945 Nonpathogen - hypothetical protein BRADO2949 1 None None None 146340028 Common - putative acyl-CoA dehydrogenase BRADO3035 144 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341661 Common - putative short chain dehydrogenase/reductase BRADO4765 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342863 Common - putative Biphenyl-2,3-diol 1,2-dioxygenase (23OHBP oxygenase) (2,3-dihydroxybiphenyl dioxygenase) (DHBD) BRADO6043 25 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 146341359 Common - putative Adenylate/Guanylate cyclase BRADO4443 79 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146342130 Common - serine-glyoxylate aminotransferase BRADO5277 155 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 146338731 Nonpathogen - hypothetical protein BRADO1664 2 COG3212 COG3212, Predicted membrane protein Function unknown 146337213 Common - Ferric uptake regulation protein (Ferric uptake regulator, Fur family) BRADO0039 189 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 146337961 Nonpathogen - hypothetical protein; putative signal peptide BRADO0853 3 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 146339821 Nonpathogen - hypothetical protein; putative membrane protein; putative exoD-related protein BRADO2822 2 COG3932 COG3932, Uncharacterized ABC-type transport system, permease components General function prediction only 146337424 Nonpathogen - hypothetical protein BRADO0262 1 None None None 146341364 Common parC DNA topoisomerase IV subunit A BRADO4448 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 146343156 Common - hypothetical protein BRADO6354 5 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 146339843 Common - conserved hypothetical protein, putative L-aminopeptidase/D-esterase BRADO2844 56 COG3191 DmpA, L-aminopeptidase/D-esterase Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146342818 Common - excinuclease ABC subunit B BRADO5995 224 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 146343085 Nonpathogen - hypothetical protein BRADO6280 1 None None None 146340808 Common ntrB Nitrogen regulation protein BRADO3867 221 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 146337352 Common - putative Hydratase/decarboxylase BRADO0185 67 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 146341502 Common - conserved hypothetical protein; putative carboxymuconolactone decarboxylase BRADO4596 65 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 146342398 Nonpathogen - hypothetical protein BRADO5555 1 None None None 146339986 Common - putative adenylate/guanylyl cyclase with a CHASE2 domain; putative signal peptide BRADO2991 84 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 146338948 Common - hypothetical protein BRADO1891 23 COG1928 PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase Posttranslational modification, protein turnover, chaperones 146337547 Common - putative 2'-5' RNA ligase BRADO0401 112 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 146340412 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3448 1 None None None 146337535 Nonpathogen ccmD heme exporter protein D (Cytochrome c biogenesis protein) BRADO0389 3 None None None 146341346 Common glyA serine hydroxymethyltransferase BRADO4430 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 146343368 Common - hypothetical protein BRADO6596 11 COG4729 COG4729, Uncharacterized conserved protein Function unknown 146341708 Nonpathogen - hypothetical protein; putative membrane protein BRADO4813 1 None None None 146342967 Common - Putative Thiamine pyrophosphate-requiring enzyme; putative Benzoylformate decarboxylase BRADO6150 220 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146338436 Nonpathogen - hypothetical protein BRADO1352 7 COG2105 COG2105, Uncharacterized conserved protein Function unknown 146338482 Common - Gamma-glutamyltranspeptidase family protein, similar to ACY1 bifunctional acylase BRADO1399 147 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 146339073 Common - putative serine protease SohB BRADO2027 187 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 146342597 Common - putative choline (or alcohol) dehydrogenase BRADO5760 89 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 146342388 Common - hypothetical protein BRADO5545 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 146343818 Nonpathogen - hypothetical protein BRADO7067 1 None None None 146338452 Nonpathogen - conserved hypothetical protein, Histone H1 (fragment) BRADO1368 1 None None None 146342291 Common sufC ABC transporter associated with Fe-S cluster assembly, ATP binding protein BRADO5446 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 146341245 Nonpathogen - hypothetical protein BRADO4321 2 None None None 146340651 Common - hypothetical protein BRADO3699 69 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 146340858 Common - conserved hypothetical protein; putative bifunctional: Alpha-2-macroglobulin ( N-terminal), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (C-terminal) BRADO3921 80 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 146340454 Common - levodione reductase BRADO3494 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339395 Common mhpB 2,3-dihydroxyphenylpropionate 1,2-dioxygenase BRADO2380 32 COG3384 COG3384, Uncharacterized conserved protein Function unknown 146337920 Nonpathogen - hypothetical protein BRADO0809 2 None None None 146343058 Common hemH ferrochelatase BRADO6249 155 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 146338997 Common opgH glucosyltransferase MdoH BRADO1946 60 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 146337713 Common grxC glutaredoxin 3 BRADO0582 118 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 146341378 Common lepB Signal peptidase I (SPase I) (Leader peptidase I) BRADO4464 205 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 146343389 Common - putative ABC transporter, permease protein (fragment); putative carbohydrate (maltose) transporter BRADO6618 140 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146341949 Common - Putative ABC transporter (ATP-binding protein) BRADO5085 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 146338821 Common - Regulatory protein, MarR BRADO1755 108 COG1846 MarR, Transcriptional regulators Transcription 146339784 Common purL phosphoribosylformylglycinamidine synthase II BRADO2785 234 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 146343398 Common ubiG bifunctional: 3-demethylubiquinone-9 3-methyltransferase; 2-octaprenyl-6-hydroxy phenol methylase BRADO6627 138 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 146340105 Common - conserved hypothetical protein; putative catalase BRADO3116 20 COG0753 KatE, Catalase Inorganic ion transport and metabolism 146343850 Nonpathogen - hypothetical protein; putative membrane protein BRADO7100 1 None None None 146341583 Common kup low affinity potassium transporter (Kup family) BRADO4684 90 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 146340574 Nonpathogen - hypothetical protein BRADO3619 1 None None None 146343456 Common atpI ATP synthase subunit A' (protein I), membrane bound, F0 sector BRADO6685 17 COG5336 COG5336, Uncharacterized protein conserved in bacteria Function unknown 146339688 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HPPK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PPPK) BRADO2683 194 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 146338546 Common trkD potassium transport system, low affinity (KUP family) BRADO1466 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 146337821 Common - Putative ABC transporter, periplasmic binding protein BRADO0702 69 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 146340419 Common - conserved hypothetical protein; putative signal peptide; putative Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase superfamily protein. BRADO3455 39 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 146338275 Common tilS tRNA(Ile)-lysidine synthase BRADO1179 185 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 146342139 Common - conserved hypothetical protein; putative permease BRADO5286 42 COG2311 COG2311, Predicted membrane protein Function unknown 146337564 Common atpD F0F1 ATP synthase subunit beta BRADO0419 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 146340820 Common valS valyl-tRNA synthetase BRADO3881 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146342336 Common - Putative Acetamidase/Formamidase family protein BRADO5492 62 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 146341182 Common - putative Transcriptional regulatory protein, AraC/XylS family with a putative AraC_E_bind domain. BRADO4255 94 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 146339157 Common - putative isoquinoline 1-oxidoreductase BRADO2115 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146340097 Common - Putative ABC transporter periplasmic-binding protein BRADO3106 39 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146343393 Nonpathogen - hypothetical protein; putative membrane protein BRADO6622 1 None None None 146341614 Common cbbZ phosphoglycolate phosphatase BRADO4715 185 COG0546 Gph, Predicted phosphatases General function prediction only 146340789 Common - hypothetical protein BRADO3847 10 None None None 146338539 Common - two-component transcriptional regulator, LuxR family (modular protein) BRADO1459 184 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 146342679 Common - hypothetical protein BRADO5846 12 None None None 146337508 Common - hypothetical protein BRADO0359 55 COG2862 COG2862, Predicted membrane protein Function unknown 146337260 Common - Conserved hypothetical protein; Putative phosphoesterase, MJ0912 type BRADO0087 71 COG0622 COG0622, Predicted phosphoesterase General function prediction only 146338828 Common - hypothetical protein BRADO1764 24 None None None 146342801 Common - putative histone acetyltransferase (HAT) BRADO5978 70 COG0456 RimI, Acetyltransferases General function prediction only 146337908 Common - putative Conjugal transfer protein, traA BRADO0796 123 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 146338850 Common - putative N-isopropylammelide isopropylaminohydrolase BRADO1789 76 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 146340426 Common - hypothetical protein BRADO3464 13 COG3798 COG3798, Uncharacterized protein conserved in bacteria Function unknown 146339441 Common - putative glycosyl transferase BRADO2427 160 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 146342646 Common - putative Cof hydrolase BRADO5813 130 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 146339913 Common - Putative Amidohydrolase family protein; putative hippurate hydrolase (Benzoylglycine amidohydrolase) BRADO2917 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 146338115 Common - Leucine aminopeptidase BRADO1011 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 146341842 Nonpathogen - hypothetical protein BRADO4972 3 None None None 146342517 Common - conserved hypothetical protein; putative extensin-like protein BRADO5679 46 COG3921 COG3921, Uncharacterized protein conserved in bacteria Function unknown 146337871 Common - conserved hypothetical protein; putative signal peptide; putative protease BRADO0756 54 COG3577 COG3577, Predicted aspartyl protease General function prediction only 146341578 Common - lipid A biosynthesis lauroyl acyltransferase BRADO4679 92 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 146339583 Common - enoyl-CoA hydratase BRADO2574 184 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146337673 Common - Catechol 1,2-dioxygenase BRADO0539 48 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 146338520 Common mdlC benzoylformate decarboxylase BRADO1439 220 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 146343644 Common - hypothetical protein BRADO6886 3 COG1813 COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 Transcription 146342226 Nonpathogen - hypothetical protein BRADO5378 3 None None None 146340521 Common - putative sugar ABC transporter (permease protein); putative exported protein BRADO3563 146 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146341289 Nonpathogen - hypothetical protein BRADO4370 4 None None None 146337699 Common - putative hydroxyacylglutathione hydrolase (Glyoxalase II) BRADO0567 171 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 146339893 Nonpathogen - hypothetical protein BRADO2895 1 None None None 146337632 Common - putative branched-chain amino acid ABC transporter, permease protein BRADO0497 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146338559 Common kaiB circadian clock protein BRADO1479 25 None None None 146338845 Common - N-carbamoyl-D-amino acid hydrolase (D-N-alpha-carbamilase) BRADO1782 181 COG0388 COG0388, Predicted amidohydrolase General function prediction only 146338032 Nonpathogen - hypothetical protein BRADO0925 2 None None None 146337226 Common - hypothetical protein BRADO0052 39 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 146343766 Nonpathogen - hypothetical protein BRADO7013 5 None None None 146338663 Common - conserved hypothetical protein; putative DNA-binding protein BRADO1595 16 None None None 146340534 Common - putative single-stranded-DNA-specific exonuclease recJ BRADO3577 195 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 146342508 Common - putative RNA polymerase sigma factor BRADO5670 41 COG4941 COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain Transcription 146337701 Common - hypothetical protein BRADO0569 31 None None None 146340546 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3589 3 None None None 146343491 Common - putative bifunctional anaerobic fatty acid oxidation complex protein (fadJ/fadB-like): enoyl-CoA hydratase/epimerase/isomerase (N-terminal); 3-hydroxyacyl-CoA dehydrogenase (C-terminal) BRADO6723 174 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 146343808 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO7057 1 COG4907 COG4907, Predicted membrane protein Function unknown 146338227 Common - hypothetical protein BRADO1127 13 None None None 146341388 Common dapA dihydrodipicolinate synthase BRADO4475 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 146337698 Common - hypothetical protein BRADO0566 53 COG3542 COG3542, Uncharacterized conserved protein Function unknown 146340018 Common csaA Secretion chaperone CsaA protein BRADO3024 161 COG0073 ARC1, EMAP domain General function prediction only 146339706 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO2704 5 None None None 146341305 Nonpathogen - conserved hypothetical protein; putative secreted protein BRADO4386 11 None None None 146340222 Common - Major Facilitator Superfamily (MFS) transporter BRADO3241 24 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343337 Nonpathogen - hypothetical protein BRADO6563 1 None None None 146341557 Common - putative Transcriptional regulatory protein slyA-like, MarR family BRADO4655 134 COG1846 MarR, Transcriptional regulators Transcription 146341787 Common - Putative precorrin-3B synthase (cobG) BRADO4906 54 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 146341337 Common - conserved hypothetical protein; putative secreted protein; putative small protein A (SmpA family) BRADO4421 23 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 146342286 Common nifH nitrogenase reductase BRADO5440 71 COG1348 NifH, Nitrogenase subunit NifH (ATPase) Inorganic ion transport and metabolism 146342461 Common - Putative outer membrane protein BRADO5620 31 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146342943 Nonpathogen - hypothetical protein BRADO6125 2 None None None 146343699 Nonpathogen - hypothetical protein BRADO6944 1 None None None 146341496 Nonpathogen - hypothetical protein BRADO4589 1 None None None 146343110 Common - hypothetical protein BRADO6307 98 COG1262 COG1262, Uncharacterized conserved protein Function unknown 146342243 Common - putative Arsenate reductase (nitrogenase-associated protein) BRADO5397 18 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 146339775 Common - hypothetical protein BRADO2775 26 COG5467 COG5467, Uncharacterized conserved protein Function unknown 146340444 Common - hypothetical protein BRADO3484 9 None None None 146342916 Common - hypothetical protein BRADO6097 43 COG2121 COG2121, Uncharacterized protein conserved in bacteria Function unknown 146342440 Common - putative transcriptional regulatory protein, LysR family BRADO5599 179 COG0583 LysR, Transcriptional regulator Transcription 146339357 Common ligK hypothetical protein BRADO2338 60 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 146342102 Common - conserved hypothetical protein; putative membrane protein; putative acyltransferase BRADO5246 16 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146343841 Common - Putative spermidine/putrescine ABC transporter (permease protein) BRADO7091 213 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 146343621 Common - Putative permease of the binding-protein-dependent transport system family BRADO6860 199 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146340239 Common - hypothetical protein BRADO3258 16 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 146339763 Common - conserved hypothetical protein; putative Peptidase C2, calpain BRADO2763 13 None None None 146341422 Common ntaA nitrilotriacetate monooxygenase component A (NTA monooxygenase component A) (NTA-MO A) BRADO4512 70 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146340171 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3187 2 COG2267 PldB, Lysophospholipase Lipid metabolism 146340633 Common hmgL hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) BRADO3681 204 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 146343145 Nonpathogen - putative General secretion pathway protein J, GspJ BRADO6343 4 None None None 146338752 Common hupC Ni/Fe-hydrogenase, 1 b-type cytochrome subunit BRADO1686 56 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 146343350 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO6577 2 None None None 146343503 Common - putative ATP dependent DNA helicase BRADO6735 134 COG1201 Lhr, Lhr-like helicases General function prediction only 146339358 Common - putative dehydrogenase, with NAD binding domain. BRADO2339 20 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146340511 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO3553 4 None None None 146339711 Nonpathogen - conserved hypothetical protein; putative peptidoglycan-binding domain-containing protein BRADO2709 6 None None None 146342904 Common - putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase BRADO6085 14 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 146341479 Nonpathogen - hypothetical protein BRADO4572 6 None None None 146342672 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A BRADO5839 70 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 146338626 Common - hypothetical protein BRADO1554 42 COG3467 COG3467, Predicted flavin-nucleotide-binding protein General function prediction only 146342529 Common - putative xanthine dehydrogenase YagT-like, iron-sulfur binding subunit BRADO5691 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 146341459 Nonpathogen - hypothetical protein BRADO4551 8 None None None 146337445 Common - putative permease of the major facilitator superfamily (MFS) transporter BRADO0285 98 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146343304 Common - putative transcriptional regulatory protein, AraC family; putative eutR-like BRADO6528 57 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 146342769 Common - putative methyl-accepting chemotaxis sensory transducer BRADO5943 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146343328 Common - Putative prokaryotic extracellular metal-binding protein BRADO6554 26 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 146337193 Common - hypothetical protein BRADO0019 9 None None None 146338857 Common - Oxidoreductase BRADO1796 39 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146342407 Common - putative Plasmid stability protein stbB BRADO5565 39 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 146342475 Common - Putative sugar (D-ribose) ABC transporter (periplasmic binding protein) BRADO5634 90 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146341290 Nonpathogen - hypothetical protein; putative membrane protein BRADO4371 1 None None None 146343189 Common - hypothetical protein BRADO6392 10 COG4271 COG4271, Predicted nucleotide-binding protein containing TIR -like domain Transcription 146343751 Common - putative response regulator receiver protein (CheY-like) BRADO6998 82 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146337914 Nonpathogen - hypothetical protein BRADO0802 1 None None None 146338351 Common - methyl-accepting chemotaxis receptor/sensory transducer with PAS domain BRADO1259 164 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339719 Common - conserved hypothetical protein; putative signal peptide BRADO2717 31 COG5402 COG5402, Uncharacterized conserved protein Function unknown 146340021 Common - hypothetical protein BRADO3027 13 None None None 146339041 Nonpathogen - hypothetical protein BRADO1994 5 None None None 146337592 Common - putative acetyltransferase BRADO0448 87 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 146338964 Common glpD glycerol-3-phosphate dehydrogenase BRADO1908 149 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 146337949 Common - hypothetical protein BRADO0839 20 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 146343445 Common - putative transcriptional regulator, AraC/XylS family BRADO6674 111 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 146341414 Common - hypothetical protein BRADO4504 170 COG0344 COG0344, Predicted membrane protein Function unknown 146339696 Common - conserved hypothetical protein; putative nucleoside-diphosphate-sugar epimerase BRADO2693 40 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146340751 Common - conserved hypothetical protein; putative membrane protein; putative High-affinity nickel-transporter (yohM-like protein) BRADO3808 32 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 146338780 Common - putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (dctQ/dctM domains) BRADO1714 126 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 161353766 Common ilvD1 dihydroxy-acid dehydratase BRADO3103 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 146337648 Nonpathogen - hypothetical protein BRADO0514 1 None None None 146343184 Common - conserved hypothetical protein; Ankyrin-repeat protein BRADO6385 104 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 146343200 Nonpathogen - hypothetical protein BRADO6406 1 None None None 146340664 Common - conserved hypothetical protein; putative ribonucleoprotein-related protein BRADO3712 9 COG4271 COG4271, Predicted nucleotide-binding protein containing TIR -like domain Transcription 146340126 Common - putative acetyl-CoA synthetase BRADO3141 219 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 146343461 Common - hypothetical protein BRADO6690 10 None None None 146342449 Nonpathogen - Conserved hypothetical protein; putative signal peptide BRADO5608 2 None None None 146337286 Common rpoN RNA polymerase factor sigma-54 BRADO0113 143 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 146339922 Common - hypothetical protein; putativ Methyl-accepting chemotaxis protein BRADO2926 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146342854 Common - hypothetical protein BRADO6034 34 COG5465 COG5465, Uncharacterized conserved protein Function unknown 146340036 Common - putative beta-lactamase family (penicillin binding protein) BRADO3044 144 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 146337176 Common dnaA chromosomal replication initiation protein BRADO0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 146338010 Common - Putative oligopeptide ABC transporter (substrate binding protein) BRADO0903 186 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146342797 Common - hypothetical protein BRADO5974 10 None None None 146343768 Common - hypothetical protein BRADO7015 4 None None None 146340232 Common - putative Acylphosphatase BRADO3251 95 COG1254 AcyP, Acylphosphatases Energy production and conversion 146343447 Common - putative transcriptional regulatory protein, LysR family BRADO6676 137 COG0583 LysR, Transcriptional regulator Transcription 146340291 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II BRADO3314 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146337729 Common gcd Quinoprotein glucose dehydrogenase BRADO0601 59 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 146343873 Common uppS Undecaprenyl pyrophosphate synthetase (UPP synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) BRADO7124 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 146341114 Common nuoB NADH dehydrogenase subunit B BRADO4185 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 146338420 Common - putative ABC transporter substrate-binding protein BRADO1335 186 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146339433 Nonpathogen - hypothetical protein; putative membrane protein BRADO2419 1 None None None 146340318 Common - polyphosphate kinase BRADO3341 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 146341836 Common - conserved hypothetical protein with CBS domain BRADO4965 90 COG0517 COG0517, FOG: CBS domain General function prediction only 146342724 Common - putative N-methyltransferase; putative phosphatidylethanolamine or menaquinone biosynthesis methyltransferase (ubiE) BRADO5893 184 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 146342452 Common - putative amidase BRADO5611 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146339607 Common - putative D-galactarate dehydratase/Altronate hydrolase BRADO2599 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 146340173 Common - conserved hypothetical protein; putative membrane protein with YeeE/YedE motives BRADO3189 29 None None None 146341024 Common - 7-cyano-7-deazaguanine reductase BRADO4095 132 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 146342720 Nonpathogen - hypothetical protein BRADO5887 2 None None None 146341130 Common - conserved hypothetical protein; Putative multicopper oxidase BRADO4201 17 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 146339885 Common - hypothetical protein BRADO2887 121 COG1690 RtcB, Uncharacterized conserved protein Function unknown 146342856 Common - conserved hypothetical protein; putative thioesterase BRADO6036 18 COG5496 COG5496, Predicted thioesterase General function prediction only 146341303 Nonpathogen - hypothetical protein; putative membrane protein BRADO4384 21 COG5283 COG5283, Phage-related tail protein Function unknown 146338029 Common - amidase BRADO0922 214 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146343317 Common - hypothetical protein BRADO6542 21 COG0730 COG0730, Predicted permeases General function prediction only 146343457 Common atpB F0F1 ATP synthase subunit A BRADO6686 203 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 146343652 Common - Putative branched-chain amino acid ABC transporter, ATP-binding protein BRADO6894 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 146337316 Common actP copper-transporting P-type ATPase BRADO0147 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 146338790 Common regB Two-component sensor histidine kinase; Putative Photosynthetic apparatus regulatory protein regB (PrrB protein) BRADO1724 206 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146337571 Common - conserved hypothetical protein; putative secreted protein BRADO0426 136 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 146342420 Common - hypothetical protein BRADO5579 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 146342120 Common - putative high-affinity branched-chain amino acid transport system permease protein BRADO5266 151 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146343269 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO6489 2 None None None 146342034 Common - hypothetical protein BRADO5172 6 None None None 146343429 Common - putative transcriptional regulator (PcaR-like), IclR family BRADO6658 118 COG1414 IclR, Transcriptional regulator Transcription 146343136 Common - conserved hypothetical protein; putative signal peptide BRADO6334 7 None None None 146343116 Common - putative energy transducer TonB BRADO6313 20 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 146343053 Common - conserved hypothetical protein; putative Carboxymuconolactone decarboxylase family protein BRADO6244 18 COG2128 COG2128, Uncharacterized conserved protein Function unknown 146340934 Common - putative outer-membrane protein; putative secreted protein BRADO4005 20 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146337421 Common - conserved hypothetical protein; putative membrane protein; putative prolipoprotein diacylglyceryltransferase BRADO0259 44 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 146343422 Common - putative sensor histidine kinase with PAS/PAC and Response regulator receiver domains BRADO6651 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146337401 Common - putative sensor histidine kinase with a Response regulator receiver domain BRADO0236 204 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146342878 Common moaD Molybdenum cofactor biosynthesis protein D BRADO6058 62 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 146340523 Common - hypothetical protein BRADO3565 19 COG3828 COG3828, Uncharacterized protein conserved in bacteria Function unknown 146337602 Nonpathogen - hypothetical protein BRADO0463 1 None None None 146339438 Common bioB biotin synthetase (Biotin synthase) BRADO2424 174 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 146338937 Common - conserved hypothetical protein; putative signal peptide BRADO1877 186 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146341507 Nonpathogen - putative dipeptide ABC transporter, permease protein (fragment) BRADO4602 1 COG4171 SapC, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 146337336 Common - putative glycosyl transferase, family 2 BRADO0168 198 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 146342129 Common - enoyl-CoA hydratase BRADO5276 175 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 146342386 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5543 4 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 146339182 Common - conserved hypothetical protein, putative ErfK/YbiS/YcfS/YnhG precursor; putative signal peptide BRADO2142 85 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146337912 Common - Conserved hypothetical protein; putative Piwi domain BRADO0800 16 None None None 146342792 Common - Putative hemolysin activator-like protein with signal peptide BRADO5969 28 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 146340513 Common parE DNA topoisomerase IV subunit B BRADO3555 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 146338958 Common - RND efflux transporter BRADO1902 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 146338503 Common - putative Transcriptional regulator, AsnC/Lrp family BRADO1421 96 COG1522 Lrp, Transcriptional regulators Transcription 146340825 Nonpathogen - hypothetical protein BRADO3887 1 None None None 146337787 Common - hypothetical protein; putative serine protease/outer membrane autotransporter precursor/Membrane-associated phospholipid phosphatase BRADO0665 51 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 146342219 Common - putative 3-ketoacyl-CoA reductase BRADO5371 233 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146341631 Common - putative periplasmic mannitol-binding protein; putative Trap-T transport system, dctP subunit BRADO4734 94 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 146337882 Common - Putative permease of the major facilitator superfamily, AmpG-like protein BRADO0767 103 None None None 146343523 Common - putative sugar ABC transporter, substrate-binding protein BRADO6758 17 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 146338132 Common infA Translation initiation factor IF-1 BRADO1029 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 146343012 Common - hypothetical protein; putative Large exoprotein involved in heme utilization or adhesion BRADO6197 74 None None None 146343037 Common - putative transcriptional regulatory protein, LysR family BRADO6225 181 COG0583 LysR, Transcriptional regulator Transcription 146340958 Common - serine/threonine protein kinase BRADO4029 8 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146342581 Common sseA 3-mercaptopyruvate sulfurtransferase BRADO5744 145 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 146342905 Nonpathogen - hypothetical protein BRADO6086 1 None None None 146341003 Common - Putative Branched-chain amino acid ABC transporter (permease protein) BRADO4074 88 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 146342640 Common yeaH hypothetical protein BRADO5805 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 146339853 Common catD 3-oxoadipate enol-lactonase (Enol-lactone hydrolase) (Beta-ketoadipate enol-lactone hydrolase) BRADO2855 158 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342463 Common - putative NAD dependent epimerase/dehydratase family protein BRADO5622 198 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146338509 Common - conserved hypothetical protein; putative signal peptide BRADO1427 5 None None None 146339401 Nonpathogen - hypothetical protein BRADO2386 4 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 146342427 Common - hypothetical protein BRADO5586 30 COG4321 COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis General function prediction only 146343834 Common - putative plasmid stability protein BRADO7084 55 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 146339225 Common - conserved hypothetical protein; putative signal peptide; TPR repeat protein BRADO2190 54 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 146340984 Common - hypothetical protein BRADO4055 165 COG0316 IscA, Uncharacterized conserved protein Function unknown 146342250 Nonpathogen - hypothetical protein BRADO5404 4 None None None 146341594 Common - conserved hypothetical protein; putative glyoxalase/dioxygenase BRADO4695 67 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146341996 Common - conserved hypothetical protein; putative signal peptide BRADO5132 25 COG4922 COG4922, Uncharacterized protein conserved in bacteria Function unknown 146339238 Nonpathogen - hypothetical protein BRADO2204 1 None None None 146337201 Nonpathogen - hypothetical protein BRADO0027 1 None None None 146339204 Common - putative 5'-nucleotidase BRADO2166 133 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 146339756 Common - putative Copper resistance protein, copD family. BRADO2756 10 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 146341098 Common - Putative hydrolase of the metallo-beta-lactamase superfamily BRADO4169 152 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 146340801 Common - putative D-3-phosphoglycerate dehydrogenase (PGDH) BRADO3860 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 146341125 Common lon ATP-dependent protease La BRADO4196 227 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 146343006 Common - putative 3-hydroxyisobutyrate dehydrogenase family protein BRADO6191 149 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146341219 Nonpathogen - hypothetical protein BRADO4293 4 None None None 146338474 Nonpathogen - hypothetical protein BRADO1391 1 None None None 146339732 Nonpathogen - hypothetical protein BRADO2730 5 None None None 146340031 Nonpathogen - hypothetical protein; putative membrane protein BRADO3038 1 None None None 146338197 Common oppC Putative oligopeptide transport system permease protein oppC (ABC superfamily, membrane) BRADO1095 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146341798 Common - putative Alpha-ribazole phosphatase (anaerobic pathway of cobalamin biosynthesis, cobC) BRADO4917 117 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 146343362 Common - hypothetical protein BRADO6589 41 COG3820 COG3820, Uncharacterized protein conserved in bacteria Function unknown 146342662 Common kdpB potassium-transporting ATPase subunit B BRADO5829 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 146339471 Common - putative transporter BRADO2459 134 COG2252 COG2252, Permeases General function prediction only 146340999 Nonpathogen - hypothetical protein; putative Dimeric alpha-beta barrel domain; putative Antibiotic biosynthesis monooxygenase BRADO4070 1 COG1359 COG1359, Uncharacterized conserved protein Function unknown 146343695 Nonpathogen - hypothetical protein BRADO6940 3 None None None 146343810 Common - putative Polysaccharide export protein BRADO7059 82 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 146340211 Common - Hydantoin utilization protein B BRADO3229 95 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 146342785 Common - hypothetical protein BRADO5962 28 COG3619 COG3619, Predicted membrane protein Function unknown 146340849 Common - putative amino acid transport protein, permease protein BRADO3912 172 COG4597 BatB, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 146343578 Common - putative transcriptional regulatory protein, GntR family BRADO6816 129 COG1802 GntR, Transcriptional regulators Transcription 146340004 Common - putative acyltransferase BRADO3009 86 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146340662 Common - Putative Protein serine-threonine phosphatase BRADO3710 92 COG4639 COG4639, Predicted kinase General function prediction only 146340675 Common - hypothetical protein BRADO3726 14 COG4219 MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component Transcription / Signal transduction mechanisms 146340356 Common - conserved hypothetical protein; putative Phenylacetic acid degradation-related protein. BRADO3384 82 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146340472 Common - putative N-acetylmuramoyl-L-alanine amidase BRADO3513 175 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 146342738 Common - Putative ABC transporter, ATP-binding protein; Putative aliphatic sulfonates transporter BRADO5910 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146338864 Common uxuA mannonate hydrolase BRADO1803 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 146340924 Common ppiB peptidyl prolyl cis-trans isomerase (rotamase B) BRADO3995 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 146341173 Common - Putative ABC transporter (permease protein) BRADO4246 107 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 146342630 Common pqqC pyrroloquinoline quinone biosynthesis protein PqqC BRADO5795 39 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 146343581 Nonpathogen - hypothetical protein BRADO6819 2 None None None 146341243 Common - hypothetical protein BRADO4319 131 COG2860 COG2860, Predicted membrane protein Function unknown 146340507 Common - Putative ATP-dependent RNA helicase BRADO3549 232 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 146338407 Common - putative transcriptional regulatory protein AsnC/Lrp family BRADO1322 154 COG1522 Lrp, Transcriptional regulators Transcription 146341445 Common - conserved hypothetical protein; putative transglycosylase BRADO4536 32 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 146338907 Nonpathogen - hypothetical protein BRADO1847 3 None None None 146339935 Nonpathogen - hypothetical protein BRADO2939 8 None None None 146337428 Common - conserved hypothetical protein; putative amine oxidase BRADO0266 21 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 146339253 Common - Putative sigma-70 factor, ECF subfamily BRADO2224 26 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146340363 Common - hypothetical protein BRADO3391 38 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 146340792 Common mazG nucleoside triphosphate pyrophosphohydrolase BRADO3851 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 146338406 Common trxB thioredoxin reductase, FAD/NAD(P)-binding BRADO1321 245 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 146341407 Common - putative Holliday junction resolvase BRADO4497 177 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 146342293 Common yfhL ferredoxin BRADO5448 103 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 146340068 Common rplX 50S ribosomal protein L24 BRADO3077 213 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 146338648 Common - putative oligopeptide ABC transporter (permease protein) BRADO1579 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146337779 Common - conserved hypothetical protein; putative sugar kinase BRADO0657 30 COG3753 COG3753, Uncharacterized protein conserved in bacteria Function unknown 146343704 Common - hypothetical protein BRADO6949 4 None None None 146340140 Nonpathogen - hypothetical protein BRADO3155 4 None None None 146342000 Common - putative signaling protein containing multidomains (CHASE/GGDE/EAL) BRADO5136 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 146337613 Nonpathogen - hypothetical protein BRADO0475 1 None None None 146342683 Common - putative branched-chain amino acid ABC transporter, ATP binding protein BRADO5850 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146343595 Common - two-component system regulator, response regulator protein BRADO6833 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 146343349 Common - putative dioxygenases related to 2-nitropropane dioxygenase BRADO6576 89 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 146341128 Nonpathogen - hypothetical protein BRADO4199 1 None None None 146337616 Nonpathogen - hypothetical protein BRADO0478 1 None None None 146342023 Common - Conserved hypothetical protein; putative membrane protein; putative acyltransferase domain protein BRADO5160 15 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 146337711 Common - hypothetical protein BRADO0580 47 COG5319 COG5319, Uncharacterized protein conserved in bacteria Function unknown 146342698 Common - Putative urease accessory protein UreF BRADO5865 16 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 146338686 Common bchX bacteriochlorophyllide reductase subunit, 35.5 kDa chain BRADO1618 70 COG1348 NifH, Nitrogenase subunit NifH (ATPase) Inorganic ion transport and metabolism 146337838 Common map methionine aminopeptidase BRADO0719 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 146342377 Nonpathogen - hypothetical protein BRADO5534 1 None None None 146339052 Common gst Glutathione S-transferase BRADO2006 94 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146339601 Common - putative NAD-dependent aldehyde dehydrogenase family protein; putative 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, HpcC-like BRADO2593 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 146340198 Nonpathogen - hypothetical protein BRADO3215 1 None None None 146338388 Common - putative General secretion pathway protein L BRADO1300 11 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 146343548 Common - conserved hypothetical protein; putative outer membrane protein (ompA-like) BRADO6785 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 146337470 Common - hypothetical protein BRADO0313 105 COG2835 COG2835, Uncharacterized conserved protein Function unknown 146341071 Common - hypothetical protein; putative membrane protein; putative forkhead-associated (FHA) domain BRADO4142 24 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 146343275 Common - putative ribonuclease BN-like family transmembrane protein BRADO6495 95 COG1295 Rbn, Predicted membrane protein Function unknown 146343887 Nonpathogen - hypothetical protein BRADO7138 3 None None None 146338295 Common - hypothetical protein BRADO1199 66 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 146339005 Common - putative metallo-phosphoesterase BRADO1954 41 COG1409 Icc, Predicted phosphohydrolases General function prediction only 146343733 Common - conserved hypothetical protein; putative signal peptide; Putative peptidoglycan-binding domain-containing protein BRADO6980 85 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 146339976 Nonpathogen - hypothetical protein BRADO2981 1 None None None 146340206 Common - Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) BRADO3224 143 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 146337904 Nonpathogen - hypothetical protein; putative signal peptide BRADO0792 2 None None None 146343743 Common - putative ABC transporter (ATP-binding protein) BRADO6990 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146343646 Common - conserved hypothetical protein; putative peptidase (sortase-like) BRADO6888 19 COG3764 SrtA, Sortase (surface protein transpeptidase) Cell envelope biogenesis, outer membrane 146339044 Common - conserved hypothetical protein; putative signal peptide BRADO1997 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 146341159 Common - putative Bacterial sugar transferase family protein BRADO4231 182 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 146338049 Common - hypothetical protein BRADO0944 105 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 146343436 Common - putative aldehyde or xanthine dehydrogenase protein, molybdenum binding subunit (YagR-like) BRADO6665 117 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146339179 Common - ABC transporter periplasmic substrate binding protein BRADO2139 107 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339420 Common - hypothetical protein BRADO2406 4 None None None 146338043 Common - Putative acyl-CoA dehydrogenase BRADO0936 155 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146342992 Common - conserved hypothetical protein with NAD(P)-binding domain; putative NmrA-like domain BRADO6175 90 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146340092 Common - 3-oxoacyl-acyl carrier protein reductase BRADO3101 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146342995 Common - Putative Spermidine/putrescine ABC transporter (ATP binding protein) BRADO6179 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 146337479 Common - putative amidase (amiD) BRADO0324 219 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 146343417 Nonpathogen - 2-phosphosulfolactate phosphatase BRADO6646 1 None None None 146339164 Common livF putative high-affinity branched-chain amino acid transport ATP-binding proteinputative BRADO2122 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337706 Common - hypothetical protein BRADO0575 17 COG3428 COG3428, Predicted membrane protein Function unknown 146340075 Common rpmD 50S ribosomal protein L30 BRADO3084 88 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 146338315 Common - probable ABC transporter permease protein BRADO1220 148 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 146338736 Nonpathogen - hypothetical protein BRADO1669 4 None None None 146337689 Common rpmF 50S ribosomal protein L32 BRADO0557 91 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 146340294 Common gmk guanylate kinase BRADO3317 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 146342587 Common - putative transcriptional regulator, TetR family (putative) BRADO5750 22 None None None 146338001 Common - Putative dipeptide ABC transporter (substrate-binding protein) BRADO0894 199 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146338466 Common - hypothetical protein; putative metallo-dependent phosphatase BRADO1383 74 COG2843 PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) Cell envelope biogenesis, outer membrane 146343107 Common - Putative Multidrug efflux transporter, AcrB/AcrD/AcrF family protein BRADO6304 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 146339138 Nonpathogen - hypothetical protein BRADO2092 1 None None None 146341674 Common - hypothetical protein BRADO4779 25 None None None 146343236 Common - putative alpha/beta-Hydrolases superfamily BRADO6455 132 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146341155 Common - Putative Polysaccharide deacetylase BRADO4227 33 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 146338256 Common - Putative 3-oxoacyl-[acyl-carrier-protein] reductase BRADO1160 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 146339557 Nonpathogen - hypothetical protein BRADO2548 1 None None None 146342323 Nonpathogen - Coenzyme PQQ synthesis protein A (fragment) BRADO5478 2 None None None 146342669 Common - putative permease of the Major Facilitator Superfamily (MFS); putative oxalate/formate antiporter BRADO5836 81 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 146340254 Nonpathogen - hypothetical protein; putative signal peptide BRADO3275 1 None None None 146338891 Nonpathogen - hypothetical protein BRADO1830 8 None None None 146343531 Common - conserved hypothetical protein; putative dioxygenase BRADO6766 55 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 146338288 Common - putative oligoendopeptidase F BRADO1192 89 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 146339087 Common - putative methyl-accepting chemotaxis receptor/sensory transducer precursor BRADO2041 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146339908 Common - Putative glutathione transferase BRADO2912 100 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146340771 Common - methionyl-tRNA synthetase BRADO3829 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 146338716 Common acsF Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase (Aerobic Mg-protoporphyrin IX monomethyl ester oxidative cyclase) BRADO1649 19 COG1633 COG1633, Uncharacterized conserved protein Function unknown 146342300 Nonpathogen - hypothetical protein BRADO5455 1 None None None 146338578 Common - RNA polymerase ECF-type sigma factor BRADO1500 143 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146340969 Common pcm Protein-L-isoaspartate O-methyltransferase (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) BRADO4040 160 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 146341536 Common rarA recombination factor protein RarA BRADO4634 234 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 146337372 Common - putative membrane-bound lytic murein transglycosylase BRADO0205 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 146339108 Common - putative sugar-nucleotide epimerase/dehydratase BRADO2062 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146343067 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO6259 3 None None None 146341494 Common - putative transcriptional regulatory protein, TetR family BRADO4587 30 COG1309 AcrR, Transcriptional regulator Transcription 146341645 Nonpathogen - hypothetical protein; putative membrane protein, putative permease of the major facilitator superfamily (COG0477) BRADO4749 1 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 146339296 Common - putative Catechol 1,2-dioxygenase BRADO2272 49 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 146340107 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO3121 1 None None None 146341054 Common gltX glutamyl-tRNA synthetase BRADO4125 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 146343771 Nonpathogen - hypothetical protein BRADO7018 1 None None None 146339644 Common - RNA polymerase sigma factor BRADO2637 154 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 146339155 Common - putative transcriptional regulatory protein, IclR family BRADO2113 95 COG1414 IclR, Transcriptional regulator Transcription 146341239 Nonpathogen - hypothetical protein BRADO4315 1 None None None 146339211 Nonpathogen - hypothetical protein BRADO2175 1 None None None 146341603 Common aroF 3-deoxy-7-phosphoheptulonate synthase (Phospho-2-dehydro-3-deoxyheptonate aldolase) (DAHP synthetase class II) BRADO4704 73 COG3200 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 146338360 Nonpathogen - hypothetical protein BRADO1269 4 None None None 146343296 Nonpathogen - hypothetical protein; putative membrane protein BRADO6519 1 None None None 146339589 Common ppc phosphoenolpyruvate carboxylase BRADO2580 117 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 146339213 Nonpathogen - hypothetical protein BRADO2177 1 None None None 146337515 Common - hypothetical protein BRADO0366 44 COG3824 COG3824, Uncharacterized protein conserved in bacteria Function unknown 146337270 Common cmk Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase) BRADO0097 205 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 146337893 Common argB acetylglutamate kinase BRADO0779 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 146342678 Common - hypothetical protein; putative excisionase domain BRADO5845 29 None None None 146342158 Common - putative alcohol dehydrogenase BRADO5308 203 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 146342844 Common - putative ABC transporter (permease protein) BRADO6024 177 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 146341903 Common flgF flagellar basal body rod protein FlgF BRADO5037 124 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 146337772 Nonpathogen - hypothetical protein BRADO0649 1 None None None 146340745 Common - hypothetical protein BRADO3800 68 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 146340796 Common hfq RNA-binding protein Hfq BRADO3855 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 146338376 Common - hypothetical protein BRADO1286 99 COG1262 COG1262, Uncharacterized conserved protein Function unknown 146339623 Common - hypothetical protein BRADO2616 16 None None None 146342527 Common - putative xanthine dehydrogenase (YagR-like), molybdenum binding subunit BRADO5689 115 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146340966 Nonpathogen - hypothetical protein BRADO4037 1 None None None 146342758 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO5932 2 None None None 146341226 Common - hypothetical protein BRADO4302 19 COG5622 COG5622, Protein required for attachment to host cells Cell motility and secretion 146341916 Nonpathogen - chemotactic signal-response protein CheL BRADO5051 4 COG3951 COG3951, Rod binding protein Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 146337355 Common - putative diguanylate cyclase (GGDEF)domain BRADO0188 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 146337891 Common - putative HAD-superfamily hydrolase; putative Pyrimidine 5-nucleotidase BRADO0776 46 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 146339301 Nonpathogen CsoS3 Carboxysome structural peptide BRADO2277 7 None None None 146339281 Common - Putative cytochrome c BRADO2257 78 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146338336 Nonpathogen - hypothetical protein BRADO1244 2 None None None 146339288 Common - putative Catechol 1,2-dioxygenase BRADO2264 49 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 146342393 Common - putative Glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) BRADO5550 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 146342546 Common - hypothetical protein; putative exported protein BRADO5708 17 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 146338751 Common hupL Uptake hydrogenase large subunit precursor BRADO1685 105 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 146338639 Common aphA Acetylpolyamine aminohydrolase (Histone deacetylase family) BRADO1570 162 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 146338383 Common - putative General secretion pathway protein G precursor (PilD-dependent protein pddA) BRADO1295 73 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 146337818 Common - Conserved hypothetical protein; putative outer membrane Protein A-like (OmpA-like) BRADO0698 29 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 146341152 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO4223 1 None None None 146337998 Common - Putative dipeptide ABC Transporter (ATP-Binding protein) BRADO0891 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 146340056 Common rpsJ 30S ribosomal protein S10 BRADO3065 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 146341253 Common - conserved hypothetical protein; putative secreted protein BRADO4329 9 None None None 146341546 Common - putative transcriptional regulatory protein, MarR family BRADO4644 66 COG1846 MarR, Transcriptional regulators Transcription 146339344 Common - putative ABC transporter substrate binding protein BRADO2325 144 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 146339950 Nonpathogen - hypothetical protein BRADO2954 2 None None None 146341147 Common - Putative Thioesterase family protein BRADO4218 40 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 146337994 Nonpathogen - hypothetical protein BRADO0887 2 None None None 146340181 Common - conserved hypothetical protein, putative membrane protein BRADO3197 37 None None None 146343437 Common - putative methyl-accepting chemotaxis receptor/sensory transducer BRADO6666 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337384 Common hisE phosphoribosyl-ATP pyrophosphatase BRADO0217 176 COG0140 HisI, Phosphoribosyl-ATP pyrophosphohydrolase Amino acid transport and metabolism 146338529 Common - hypothetical protein BRADO1448 12 COG4269 COG4269, Predicted membrane protein Function unknown 146340616 Nonpathogen - hypothetical protein BRADO3661 4 None None None 146340725 Common - hypothetical protein BRADO3778 35 COG3785 COG3785, Uncharacterized conserved protein Function unknown 146338324 Common hemN coproporphyrinogen III oxidase BRADO1229 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 146341887 Nonpathogen - conserved hypothetical protein; putative signal peptide; putative C-type lectin-like BRADO5021 7 None None None 146341653 Common - Exopolysaccharide production protein exoY BRADO4757 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 146339113 Common - putative Fe-S oxidoreductase homolog to Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase BRADO2067 70 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 146341229 Nonpathogen - hypothetical protein BRADO4305 2 None None None 146341474 Nonpathogen - hypothetical protein BRADO4567 2 None None None 146342628 Nonpathogen pqqA pyrroloquinoline quinone biosynthesis protein A (Coenzyme PQQ synthesis protein A) BRADO5793 1 None None None 146340214 Common - hypothetical protein BRADO3232 39 COG5507 COG5507, Uncharacterized conserved protein Function unknown 146340476 Common - putative dehydrogenase, NAD(P)-binding domain BRADO3517 171 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 146341203 Common ntaA nitrilotriacetate monooxygenase component A (NTA monooxygenase component A) (NTA-MO A) BRADO4277 65 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 146343755 Common cheW Chemotaxis protein cheW BRADO7002 129 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 146338174 Common cysW sulfate/thiosulfate permease W protein (ABC superfamily, membrane) BRADO1072 213 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 146341080 Common - putative Alcohol dehydrogenase, zinc-dependent BRADO4151 21 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 146337369 Common dnaQ DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function BRADO0202 192 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 146342530 Common - putative NUDIX hydrolase (modular protein) BRADO5692 36 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 146338208 Common - Putative ABC transporter, ATP-binding protein, ATPase BRADO1107 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 146343095 Common - Putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) BRADO6290 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 146338596 Nonpathogen - conserved hypothetical protein; putative exported protein BRADO1523 2 None None None 146340281 Common - putative cyclopropane-fatty-acyl-phospholipid synthase (Cyclopropane fatty acid synthase) (CFA synthase) BRADO3304 129 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 146341091 Nonpathogen - hypothetical protein; Putative hydrolase BRADO4162 2 COG1409 Icc, Predicted phosphohydrolases General function prediction only 146338056 Nonpathogen - hypothetical protein BRADO0951 1 None None None 146342892 Common - hypothetical protein BRADO6073 114 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 146340753 Common - cyclohexadienyl dehydratase precursor BRADO3810 160 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 146337750 Common - ABC transporter, substrate binding protein; putative dipeptide transporter BRADO0624 212 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146341823 Common - putative transcriptional repressor for glyoxylate bypass operon, IclR family BRADO4952 122 COG1414 IclR, Transcriptional regulator Transcription 146339610 Common - hypothetical protein BRADO2602 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 146339128 Common - hypothetical protein BRADO2082 13 None None None 146341684 Common - putative sugar ABC transporter, ATP-binding protein; putative ribose ABC transporter rbsA-like BRADO4789 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 146342248 Common - conserved hypothetical protein (domain of unknown function DUF59) BRADO5402 153 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 146342198 Common phnM putative Metal-dependent hydrolase involved in phosphonate metabolism; PhnM protein BRADO5350 53 COG3454 COG3454, Metal-dependent hydrolase involved in phosphonate metabolism Inorganic ion transport and metabolism 146337767 Common - Conserved hypothetical protein; putative Staphylococcus nuclease (SNase-like) BRADO0644 10 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 146340133 Nonpathogen - hypothetical protein BRADO3148 2 None None None 146338142 Common - Putative metal-dependent phosphohydrolase BRADO1039 88 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 146342008 Common - Putative virulence factor MviN-like protein BRADO5145 189 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 146337433 Common - hypothetical protein BRADO0271 25 COG5528 COG5528, Predicted integral membrane protein Function unknown 146343181 Nonpathogen - hypothetical protein BRADO6382 1 None None None 146340111 Common - putative acyl-CoA dehydrogenase BRADO3126 157 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 146341469 Common - putative aldo/keto reductase; putative 2, 5-diketo-D-gluconate reductase B (DkgB-like) BRADO4561 181 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 146338562 Common - Putative Glutathionylspermidine synthase family protein BRADO1482 52 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 146340717 Common recG DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration BRADO3769 210 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 146341542 Nonpathogen - hypothetical protein; putative membrane protein BRADO4640 5 None None None 146340842 Common - putative multidrug efflux system, outer membrane subunit (efflux pump component) (TolC family) BRADO3905 137 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 146343279 Common - hypothetical protein BRADO6500 14 None None None 146338859 Common - putative oligopeptide transport protein (ABC superfamily, membrane) BRADO1798 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 146338606 Common - Putative gamma-glutamyltranspeptidase BRADO1534 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 146340344 Common - putative glutathione peroxidase BRADO3371 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 146338961 Common yciA Acyl-CoA thioester hydrolase BRADO1905 135 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 146337794 Common - Conserved hypothetical protein; putative nucleoside-diphosphate-sugar epimerase BRADO0673 45 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 146341350 Common - putative transcriptional regulatory protein, MarR family BRADO4434 22 COG1846 MarR, Transcriptional regulators Transcription 146337922 Nonpathogen - hypothetical protein BRADO0811 2 None None None 146342564 Common - hypothetical protein BRADO5727 42 COG3576 COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase General function prediction only 146341648 Common - hypothetical protein; putative glycosidase, putative secreted protein BRADO4752 11 COG4124 ManB, Beta-mannanase Carbohydrate transport and metabolism 146339361 Common ligB Protocatechuate 4,5-dioxygenase, beta chain BRADO2342 30 COG3384 COG3384, Uncharacterized conserved protein Function unknown 146338189 Common - hypothetical protein BRADO1087 24 COG2845 COG2845, Uncharacterized protein conserved in bacteria Function unknown 146340876 Common - conserved hypothetical protein with Photosynthetic reaction centre domain (PCR-barrel) BRADO3942 28 None None None 146339634 Common - putative phytoene synthase BRADO2627 63 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 146340912 Common - putative histidinase kinase-response regulator hybrid protein BRADO3981 222 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 146340403 Common - putative methyl-accepting chemotaxis receptor/sensory transducer protein BRADO3436 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146338393 Common - conserved hypothetical protein; putative FMN binding domain BRADO1306 11 COG2869 NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC Energy production and conversion 146338834 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1771 4 None None None 146337555 Common lpd dihydrolipoamide dehydrogenase BRADO0409 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 146338209 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1108 1 None None None 146342558 Common - putative transcriptional regulator (Helix-turn-helix, Fis-type) BRADO5721 22 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146342706 Common - Putative branched-chain amino acid ABC transporter, permease protein BRADO5873 147 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 146342203 Common phnH carbon-phosphorus lyase complex subunit BRADO5355 43 COG3625 PhnH, Uncharacterized enzyme of phosphonate metabolism Inorganic ion transport and metabolism 146338569 Common - Putative ABC transporter (ATP binding protein)(tauB-like) BRADO1490 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 146340013 Common - putative ABC transporter periplasmic-binding protein; putative oligopeptide/dipeptide ABC transporter BRADO3019 179 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 146338921 Nonpathogen - hypothetical protein BRADO1861 1 None None None 146337208 Common - conserved hypothetical protein; putative Universal stress protein family, UspA-like BRADO0034 26 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 146342618 Common - hypothetical protein BRADO5782 10 COG3832 COG3832, Uncharacterized conserved protein Function unknown 146341864 Nonpathogen - hypothetical protein BRADO4996 1 None None None 146340941 Common - conserved hypothetical protein; putative signal peptide BRADO4012 93 COG3391 COG3391, Uncharacterized conserved protein Function unknown 146339531 Common paaC Phenylacetic acid degradation protein paaC BRADO2521 42 COG3396 COG3396, Uncharacterized conserved protein Function unknown 146342972 Nonpathogen - hypothetical protein BRADO6155 2 None None None 146339275 Common - hypothetical protein; putative membrane protein BRADO2250 85 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 146337544 Common - putative ABC transporter, permease protein BRADO0398 94 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 146342133 Common - bifunctional protein BRADO5280 202 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 146337641 Common - putative response regulator receiver (CheY-like protein) BRADO0507 24 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146340431 Nonpathogen - hypothetical protein; putative signal peptide BRADO3470 1 None None None 146337987 Common - putative ABC transporter (ATP-binding protein) BRADO0879 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 146337488 Common - putative Glutathione S-transferase III (GST-III) BRADO0334 98 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 146342330 Common - Putative cytochrome c protein BRADO5485 12 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 146340153 Common - putative SUN-family protein, RNA methyltransferase BRADO3168 205 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 146338155 Nonpathogen - conserved hypothetical protein; putative signal peptide BRADO1052 2 None None None 146341668 Common - putative ATPase, AAA family BRADO4773 90 COG0714 COG0714, MoxR-like ATPases General function prediction only 146337953 Nonpathogen - hypothetical protein BRADO0844 1 None None None 146337873 Common - Hypothetical protein; Putative Methyl-accepting chemotaxis protein (fragment) BRADO0758 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146342383 Common - hypothetical protein BRADO5540 53 COG3323 COG3323, Uncharacterized protein conserved in bacteria Function unknown 146338630 Common - putative esterase of the alpha-beta hydrolase superfamily BRADO1558 15 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 146339731 Common - Putative Two-component sensor histidine kinase BRADO2729 193 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146338797 Nonpathogen - hypothetical protein; putative signal peptide BRADO1731 1 None None None 146342212 Common - putative PhnE protein, phosphonate ABC transporter, putative membrane protein BRADO5364 129 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 146340185 Common - putative membrane fusion protein, component of an efflux pump (RND family, MFP subunit) BRADO3201 106 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 146338238 Common - Methyl-accepting chemotaxis sensory transducer precursor BRADO1142 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 146337957 Nonpathogen - hypothetical protein; putative signal peptide BRADO0848 1 None None None 146339246 Common - hypothetical protein; Purtative Large exoprotein involved in heme utilization or adhesion BRADO2213 83 None None None 146341828 Nonpathogen - hypothetical protein BRADO4957 4 None None None 146339014 Common - hypothetical protein BRADO1963 50 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 146341294 Nonpathogen - hypothetical protein BRADO4375 11 None None None 146340595 Nonpathogen - hypothetical protein BRADO3640 1 None None None 146343611 Common - putative cytochrome C; possible sulfur oxidation protein precursor SoxA BRADO6849 30 COG3258 COG3258, Cytochrome c Energy production and conversion 146338192 Common - Putative diguanylate cyclase (GGDEF) precursor BRADO1090 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 146338398 Common - putative toxic anion resistance protein (TelA) BRADO1312 42 COG3853 TelA, Uncharacterized protein involved in tellurite resistance Inorganic ion transport and metabolism 146339742 Common - Putative serine protease do-like precursor BRADO2741 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 146343333 Nonpathogen - hypothetical protein BRADO6559 2 None None None 146341973 Nonpathogen - conserved hypothetical protein; putative signal peptide; putative Pyridine nucleotide-disulphide oxidoreductase family protein BRADO5109 16 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 146341460 Common - conserved hypothetical protein; putative alpha/beta-Hydrolases BRADO4552 6 COG2267 PldB, Lysophospholipase Lipid metabolism 146343748 Common - response regulator receiver (CheY-like protein) BRADO6995 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 146343687 Common - hypothetical protein; putative membrane protein BRADO6930 2 None None None 146339457 Common - nitrogen fixation protein fixH BRADO2443 21 COG5456 COG5456, Predicted integral membrane protein linked to a cation pump Inorganic ion transport and metabolism 146338758 Common hupJ hydrogenase expression/formation protein hupJ BRADO1692 23 None None None 146340818 Common lipA lipoyl synthase BRADO3879 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 146340509 Common - conserved hypothetical protein; putative caspase domain; putative exported protein BRADO3551 22 COG4249 COG4249, Uncharacterized protein containing caspase domain General function prediction only 146339261 Common - putative UDP-glucose lipid carrier transferase; putative membrane protein BRADO2232 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 146338881 Nonpathogen - conserved hypothetical protein; putative anti-sigma factor antagonist BRADO1820 2 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 146339372 Common - putative feruloyl esterase BRADO2353 20 None None None 146337451 Common - hypothetical protein BRADO0291 13 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 146339847 Common livF high-affinity branched-chain amino acid ABC transporter (ATP-binding protein) BRADO2849 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 146337823 Common - Putative ABC transporter, permease protein BRADO0704 108 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 146341141 Common - putative Permease of the major facilitator superfamily (MFS); putative citrate transporter BRADO4212 122 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 146339959 Common - hypothetical protein BRADO2963 13 None None None 146339034 Nonpathogen - hypothetical protein BRADO1985 4 None None None 146341064 Common cdsA Phosphatidate cytidylyltransferase (CDP-diacylglycerol synthase) BRADO4135 208 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 146342658 Common - hypothetical protein BRADO5825 7 None None None 146337855 Common chvG two component Sensor protein chvG (Histidine kinase sensory protein exoS) BRADO0736 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146342360 Common leuC isopropylmalate isomerase large subunit BRADO5516 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 146338364 Nonpathogen - putative gas vesicle synthesis protein, GvpG-like BRADO1273 2 COG3462 COG3462, Predicted membrane protein Function unknown 146341815 Common - Permease (fragment) BRADO4940 39 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 146338778 Common - Putative Isoquinoline 1-oxidoreductase beta subunit, iorB-like BRADO1712 111 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 146342542 Common - putative two component sensor histidine kinase; putative osmolarity sensor BRADO5704 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 146341327 Common - putative enzyme with alpha/beta-hydrolase domain; putative triacylglycerol lipase (esterase) BRADO4409 186 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 146342594 Common - putative Cytochrome P450 monooxygenase BRADO5757 55 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 146339767 Common - putative Transcriptional regulatory protein, TetR family BRADO2767 69 COG1309 AcrR, Transcriptional regulator Transcription 146341747 Common - conserved hypothetical protein; putative hydrolase BRADO4863 28 None None None 146337983 Common - Putative Hydantoin racemase BRADO0875 42 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 146337720 Common - putative Peptidylprolyl isomerase BRADO0589 167 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 146340605 Nonpathogen - hypothetical protein BRADO3650 1 None None None 146339335 Common - putative opine dehydrogenase BRADO2316 25 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 146343471 Nonpathogen - hypothetical protein BRADO6701 1 None None None 146342483 Nonpathogen - Putative Flp/Fap pilin component (modular protein) BRADO5643 2 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 146343606 Common - putative Prolyl oligopeptidase BRADO6844 109 COG1505 COG1505, Serine proteases of the peptidase family S9A Amino acid transport and metabolism 146340409 Common - hypothetical protein BRADO3442 9 COG3253 COG3253, Uncharacterized conserved protein Function unknown 146338875 Common - Galactose 1-dehydrogenase BRADO1814 146 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 146338800 Nonpathogen - hypothetical protein BRADO1734 1 None None None 146343123 Common - conserved hypothetical protein; putative hydrolase BRADO6320 12 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only