Burkholderia cepacia AMMD chromosome 3, complete sequence NC_008392 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 115360842 Pathogen - hypothetical protein Bamb_6101 1 COG4263 NosZ, Nitrous oxide reductase Energy production and conversion 115360426 Pathogen - hypothetical protein Bamb_5682 3 None None None 115360831 Common - major facilitator superfamily, (MFS_1) family Bamb_6090 15 None None None 115360969 Common - hypothetical protein Bamb_6228 3 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 115360864 Common - TRAP dicarboxylate transporter, DctP subunit Bamb_6123 113 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 115361031 Common - AAA ATPase Bamb_6290 27 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 115360442 Common - ATPase AAA-2 domain protein Bamb_5698 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 115360724 Pathogen - hypothetical protein Bamb_5983 1 None None None 115360710 Common - acetyl-CoA acetyltransferases Bamb_5969 174 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 115360589 Common - 6-phosphogluconate dehydrogenase, NAD-binding Bamb_5846 179 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 115360691 Common - DNA-binding transcriptional regulator CynR Bamb_5949 190 COG0583 LysR, Transcriptional regulator Transcription 115361272 Common - Formyl-CoA transferase Bamb_6531 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 115360793 Common - alpha/beta hydrolase fold Bamb_6052 3 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115361203 Common - polysaccharide deacetylase Bamb_6462 47 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 115361257 Common - Integrase, catalytic region Bamb_6516 23 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 115360706 Common - dihydropyrimidine dehydrogenase Bamb_5965 136 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 115360811 Common - FAD dependent oxidoreductase Bamb_6070 98 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 115360467 Common - alpha/beta hydrolase fold Bamb_5723 98 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115360642 Common - sodium/sulphate symporter Bamb_5900 41 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 115360829 Common - hypothetical protein Bamb_6088 39 None None None 115360338 Common - malto-oligosyltrehalose trehalohydrolase Bamb_5594 154 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 115361317 Common - RND efflux system, outer membrane lipoprotein, NodT family Bamb_6576 109 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 115360526 Common - AMP-dependent synthetase and ligase Bamb_5782 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115360379 Common - short-chain dehydrogenase/reductase SDR Bamb_5635 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360667 Common - beta-ketoacyl synthase Bamb_5925 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360711 Common - short-chain dehydrogenase/reductase SDR Bamb_5970 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360750 Common - protein of unknown function DUF6, transmembrane Bamb_6009 27 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 115361102 Common - FAD dependent oxidoreductase Bamb_6361 86 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 115360545 Pathogen - hypothetical protein Bamb_5801 1 None None None 115360515 Common - beta-ketothiolase Bamb_5771 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 115361071 Common - Aldose 1-epimerase Bamb_6330 100 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 115360458 Common - UspA domain protein Bamb_5714 64 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 115360653 Common - LuxR family transcriptional regulator Bamb_5911 12 None None None 115360371 Common - transcriptional regulator, LysR family Bamb_5627 114 COG0583 LysR, Transcriptional regulator Transcription 115360994 Common - aminotransferase, class V Bamb_6253 196 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 115360853 Common - NmrA family protein Bamb_6112 59 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 115361041 Common - type II secretion system protein Bamb_6300 79 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 115360364 Pathogen - hypothetical protein Bamb_5620 1 None None None 115361293 Common - CopG domain protein DNA-binding domain protein Bamb_6552 9 None None None 115360612 Common - two component transcriptional regulator, winged helix family Bamb_5869 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115361227 Common - polysaccharide deacetylase Bamb_6486 41 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 115361156 Common - HpcH/HpaI aldolase Bamb_6415 110 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 115361023 Common - major facilitator superfamily MFS_1 Bamb_6282 124 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361092 Common - haloacid dehalogenase, type II Bamb_6351 44 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 115361215 Common - amino acid adenylation domain Bamb_6474 224 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360352 Common - hypothetical protein Bamb_5608 15 None None None 115360484 Common - periplasmic sensor signal transduction histidine kinase Bamb_5740 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 115360553 Common - isochorismatase hydrolase Bamb_5810 76 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 115361002 Common - short-chain dehydrogenase/reductase SDR Bamb_6261 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360933 Common - DNA topoisomerase, type I, putative Bamb_6192 45 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 115360322 Common - FAD dependent oxidoreductase Bamb_5578 106 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 115360886 Pathogen - hypothetical protein Bamb_6145 1 None None None 115361314 Common - cytochrome c oxidase, subunit I Bamb_6573 164 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 115360946 Common - Integrase, catalytic region Bamb_6205 144 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 115360440 Common - transcriptional regulator, GntR family Bamb_5696 222 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 115360492 Common - GAF sensor signal transduction histidine kinase Bamb_5748 161 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 115360407 Pathogen - membrane protein Bamb_5663 1 COG4803 COG4803, Predicted membrane protein Function unknown 115360326 Common - sugar efflux transporter Bamb_5582 116 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360385 Common - NAD-dependent epimerase/dehydratase Bamb_5641 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 115360816 Common - LrgB family protein Bamb_6075 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 115360540 Common - Zn-dependent alcohol dehydrogenases class III-like protein Bamb_5796 49 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 115360678 Common - 6-aminohexanoate-dimer hydrolase Bamb_5936 57 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 115360633 Pathogen - hypothetical protein Bamb_5890 2 None None None 115361120 Pathogen - hypothetical protein Bamb_6379 1 None None None 115360542 Common - cold-shock DNA-binding domain protein Bamb_5798 181 COG1278 CspC, Cold shock proteins Transcription 115361083 Common - hypothetical protein Bamb_6342 2 None None None 115360883 Pathogen - hypothetical protein Bamb_6142 1 None None None 115361284 Common - Nitrile hydratase Bamb_6543 18 None None None 115360779 Common - transcriptional regulator, LysR family Bamb_6038 174 COG0583 LysR, Transcriptional regulator Transcription 115360357 Pathogen - hypothetical protein Bamb_5613 1 None None None 115360456 Common - Tetratricopeptide TPR_2 repeat protein Bamb_5712 75 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 115360430 Common - formate dehydrogenase family accessory protein FdhD Bamb_5686 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 115360975 Common - hypothetical protein Bamb_6234 19 None None None 115360806 Common - extracellular solute-binding protein, family 1 Bamb_6065 135 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 115361098 Common - ABC transporter related Bamb_6357 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 115361243 Common - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase Bamb_6502 196 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 115360739 Common - transcriptional regulator, LysR family Bamb_5998 165 COG0583 LysR, Transcriptional regulator Transcription 115361026 Common - hypothetical protein Bamb_6285 10 None None None 115360361 Pathogen - hypothetical protein Bamb_5617 1 None None None 115360631 Pathogen - hypothetical protein Bamb_5888 2 None None None 115361280 Common - transcriptional regulator, XRE family Bamb_6539 7 None None None 115360833 Common - Saccharopine dehydrogenase Bamb_6092 41 COG3268 COG3268, Uncharacterized conserved protein Function unknown 115360339 Common - 4-alpha-glucanotransferase Bamb_5595 118 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 115361325 Common - Rieske (2Fe-2S) domain protein Bamb_6584 83 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 115361267 Common - beta-lactamase domain protein Bamb_6526 138 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 115360891 Common - AMP-dependent synthetase and ligase Bamb_6150 217 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115360332 Common - Endonuclease/exonuclease/phosphatase Bamb_5588 80 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 115360991 Common - sodium:dicarboxylate symporter Bamb_6250 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 115361144 Common - hypothetical protein Bamb_6403 24 None None None 115361189 Common - short-chain dehydrogenase/reductase SDR Bamb_6448 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115361164 Common - haloacid dehalogenase, type II Bamb_6423 83 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 115361064 Common - ABC transporter related Bamb_6323 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 115360908 Common - coenzyme PQQ synthesis D Bamb_6167 15 None None None 115360597 Common - type III secretion apparatus lipoprotein, YscJ/HrcJ family Bamb_5854 67 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 115360738 Common - Adenylosuccinate synthase Bamb_5997 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 115360753 Common - RND efflux system, outer membrane lipoprotein, NodT family Bamb_6012 107 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 115361305 Common - protein of unknown function DUF305 Bamb_6564 41 COG3544 COG3544, Uncharacterized protein conserved in bacteria Function unknown 115360568 Common - Amidohydrolase 3 Bamb_5825 101 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 115361228 Common - hypothetical protein Bamb_6487 154 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 115360628 Pathogen - hypothetical protein Bamb_5885 1 None None None 115360824 Common - putative transcriptional regulators, CopG/Arc/MetJ family Bamb_6083 17 COG3609 COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain Transcription 115361250 Common - Creatininase Bamb_6509 85 COG1402 COG1402, Uncharacterized protein, putative amidase General function prediction only 115360760 Common - ornithine cyclodeaminase Bamb_6019 74 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 115360574 Common - hypothetical protein Bamb_5831 4 None None None 115361014 Common - extracellular solute-binding protein, family 3 Bamb_6273 27 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115361276 Common - ABC transporter substrate binding protein Bamb_6535 22 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 115360876 Common - citrate synthase-like protein Bamb_6135 8 COG0372 GltA, Citrate synthase Energy production and conversion 115361193 Common - short-chain dehydrogenase/reductase SDR Bamb_6452 232 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 115360534 Common - membrane protein-like protein Bamb_5790 48 COG3781 COG3781, Predicted membrane protein Function unknown 115361175 Common - transcriptional regulator, LysR family Bamb_6434 105 COG0583 LysR, Transcriptional regulator Transcription 115360785 Common - aminotransferase, class I and II Bamb_6044 227 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 115361131 Common - heat shock protein Hsp20 Bamb_6390 160 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 115360772 Common - General substrate transporter Bamb_6031 130 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 115360580 Common - ABC transporter related Bamb_5837 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 115360788 Pathogen - hypothetical protein Bamb_6047 1 None None None 115360412 Common - ATPase AAA-2 domain protein Bamb_5668 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 115360916 Common - exopolysaccharide transport protein family Bamb_6175 158 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 115361259 Common - hypothetical protein Bamb_6518 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 115360318 Common - transcriptional regulator, IclR family Bamb_5574 123 COG1414 IclR, Transcriptional regulator Transcription 115361000 Common - hypothetical protein Bamb_6259 2 COG4319 COG4319, Ketosteroid isomerase homolog Function unknown 115360799 Common - protein of unknown function DUF6, transmembrane Bamb_6058 143 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 115360383 Common - transport-associated Bamb_5639 36 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 115360528 Common - periplasmic sensor signal transduction histidine kinase Bamb_5784 220 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 115360389 Common - two component, sigma54 specific, transcriptional regulator, Fis family Bamb_5645 174 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 115360665 Common - beta-ketoacyl synthase Bamb_5923 207 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115361319 Common - efflux transporter, RND family, MFP subunit Bamb_6578 92 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 115360663 Common - beta-ketoacyl synthase Bamb_5921 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115361216 Common - beta-lactamase domain protein Bamb_6475 32 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 115361021 Common - pyruvate carboxyltransferase Bamb_6280 198 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 115360791 Pathogen - acyl carrier protein Bamb_6050 2 None None None 115360651 Pathogen - exodeoxyribonuclease V, beta subunit Bamb_5909 1 None None None 115361073 Common - xylose isomerase Bamb_6332 68 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 115361113 Common - type I secretion membrane fusion protein, HlyD family Bamb_6372 124 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 115360681 Common - beta-lactamase domain protein Bamb_5939 43 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 115360373 Common - major facilitator superfamily MFS_1 Bamb_5629 162 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360460 Pathogen - hypothetical protein Bamb_5716 1 None None None 115360683 Common - acyl-CoA dehydrogenase domain protein Bamb_5941 159 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 115360996 Common - HpcH/HpaI aldolase Bamb_6255 115 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 115360855 Pathogen - hypothetical protein Bamb_6114 1 None None None 115361311 Common - glycoside hydrolase 15-related Bamb_6570 74 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 115360638 Common - amidohydrolase Bamb_5896 172 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 115360708 Common - allantoate amidohydrolase Bamb_5967 84 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 115360822 Common - hypothetical protein Bamb_6081 19 None None None 115360587 Common - hypothetical protein Bamb_5844 22 None None None 115360473 Common - 2-dehydropantoate 2-reductase Bamb_5729 132 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 115360717 Pathogen - hypothetical protein Bamb_5976 1 COG2410 COG2410, Uncharacterized conserved protein Function unknown 115360659 Common - phosphopantetheine-binding Bamb_5917 43 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360726 Common - efflux transporter, RND family, MFP subunit Bamb_5985 164 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 115361117 Common - major facilitator superfamily MFS_1 Bamb_6376 200 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 115360610 Pathogen - hypothetical protein Bamb_5867 4 None None None 115360409 Common - Dyp-type peroxidase family Bamb_5665 55 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 115360675 Common - MATE efflux family protein Bamb_5933 153 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 115360359 Pathogen - hypothetical protein Bamb_5615 1 None None None 115360693 Common - protein of unknown function DUF1348 Bamb_5951 49 COG3558 COG3558, Uncharacterized protein conserved in bacteria Function unknown 115360840 Common - hypothetical protein Bamb_6099 2 None None None 115360382 Common - short chain dehydrogenase Bamb_5638 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 115360704 Common - dihydropyrimidinase Bamb_5963 199 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 115360451 Common - PpiC-type peptidyl-prolyl cis-trans isomerase Bamb_5707 111 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 115360866 Common - TRAP dicarboxylate transporter, DctM subunit Bamb_6125 136 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 115360644 Common - Rossmann fold nucleotide-binding protein-like protein Bamb_5902 11 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 115360619 Common - type II secretion system protein Bamb_5876 27 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 115361088 Common - transcriptional regulator, AsnC family Bamb_6347 140 COG1522 Lrp, Transcriptional regulators Transcription 115360884 Pathogen - hypothetical protein Bamb_6143 1 None None None 115361122 Common - family S53 non-peptidase Bamb_6381 27 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 115361291 Pathogen - hypothetical protein Bamb_6550 1 None None None 115360539 Common - Cupin 2, conserved barrel domain protein Bamb_5795 24 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 115360931 Common - putative flagellar transcriptional activator FlhD Bamb_6190 13 None None None 115360449 Common - phage integrase family protein Bamb_5705 201 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 115360513 Common - hypothetical protein Bamb_5769 3 None None None 115360324 Common - Alcohol dehydrogenase, zinc-binding domain protein Bamb_5580 165 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 115360953 Common - cytochrome c oxidase, subunit III Bamb_6212 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 115360490 Pathogen - hypothetical protein Bamb_5746 1 None None None 115360329 Common - MgtC/SapB transporter Bamb_5585 114 COG1285 SapB, Uncharacterized membrane protein Function unknown 115360320 Common - polar amino acid ABC transporter, inner membrane subunit Bamb_5576 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 115361043 Common - (2Fe-2S)-binding domain protein Bamb_6302 121 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 115361247 Common - AMP-dependent synthetase and ligase Bamb_6506 219 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115360519 Common - short-chain dehydrogenase/reductase SDR Bamb_5775 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360354 Common - ATP dependent DNA ligase Bamb_5610 98 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 115360734 Pathogen - hypothetical protein Bamb_5993 1 None None None 115360394 Common - Carbamoyltransferase Bamb_5650 52 COG2192 COG2192, Predicted carbamoyl transferase, NodU family Posttranslational modification, protein turnover, chaperones 115361208 Pathogen - hypothetical protein Bamb_6467 1 None None None 115360870 Common - D-lactate dehydrogenase (cytochrome) Bamb_6129 164 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 115360948 Common - hypothetical protein Bamb_6207 11 None None None 115360421 Common - transcriptional regulator, AbrB family Bamb_5677 10 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 115360924 Common - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family Bamb_6183 105 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 115360366 Common - PRC-barrel domain protein Bamb_5622 40 COG1873 COG1873, Uncharacterized conserved protein Function unknown 115360561 Common - cytochrome c, class I Bamb_5818 54 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 115361295 Common - alkylphosphonate utilization operon protein PhnA Bamb_6554 106 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 115361154 Common - thiamine pyrophosphate enzyme domain protein TPP-binding Bamb_6413 47 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 115360732 Common - metal dependent phosphohydrolase Bamb_5991 22 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 115360469 Common - short chain dehydrogenase Bamb_5725 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 115360701 Common - cytochrome c biogenesis protein, transmembrane region Bamb_5960 78 COG0785 CcdA, Cytochrome c biogenesis protein Posttranslational modification, protein turnover, chaperones 115360768 Common - nitroreductase Bamb_6027 56 COG0778 NfnB, Nitroreductase Energy production and conversion 115360744 Pathogen - hypothetical protein Bamb_6003 1 None None None 115361190 Common - transcriptional regulator, LysR family Bamb_6449 137 COG0583 LysR, Transcriptional regulator Transcription 115360504 Common - Substrate-binding region of ABC-type glycine betaine transport system Bamb_5760 87 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 115360475 Common - RNA polymerase, sigma-24 subunit, ECF subfamily Bamb_5731 164 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 115361278 Common - histidine kinase Bamb_6537 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 115361096 Common - binding-protein-dependent transport systems inner membrane component Bamb_6355 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 115361009 Common - major facilitator superfamily MFS_1 Bamb_6268 210 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 115360334 Common - alpha amylase, catalytic region Bamb_5590 102 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 115361056 Common - Amidase Bamb_6315 212 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 115361146 Common - Amidase Bamb_6405 216 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 115360751 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Bamb_6010 4 None None None 115360881 Common - hypothetical protein Bamb_6140 4 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 115361187 Common - alkylhydroperoxidase like protein, AhpD family Bamb_6446 80 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 115361049 Common - short chain dehydrogenase Bamb_6308 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115361195 Common - phenazine biosynthesis protein PhzF family Bamb_6454 124 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 115361037 Common - TadE family protein Bamb_6296 7 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 115360604 Common - type III secretion system protein Bamb_5861 128 COG4790 EscR, Type III secretory pathway, component EscR Intracellular trafficking and secretion 115360509 Common - 3-oxoacyl-(acyl-carrier-protein) synthase Bamb_5765 174 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 115360861 Common - transcriptional regulator, GntR family Bamb_6120 133 COG1802 GntR, Transcriptional regulators Transcription 115361182 Common - Alcohol dehydrogenase GroES domain protein Bamb_6441 211 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 115361248 Common - transcriptional regulator, AraC family Bamb_6507 75 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361030 Common - peptidase A24A, prepilin type IV Bamb_6289 13 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 115360906 Common - pyrroloquinoline quinone biosynthesis protein PqqB Bamb_6165 44 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 115360783 Common - transcriptional regulator, LysR family Bamb_6042 176 COG0583 LysR, Transcriptional regulator Transcription 115361105 Common - amidohydrolase Bamb_6364 172 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 115361274 Common - binding-protein-dependent transport systems inner membrane component Bamb_6533 165 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 115360410 Common - Linocin_M18 bacteriocin protein Bamb_5666 20 COG1659 COG1659, Uncharacterized protein, linocin/CFP29 homolog Function unknown 115361241 Common - transcriptional regulator, AraC family Bamb_6500 72 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360486 Common - two component transcriptional regulator, LuxR family Bamb_5742 208 COG4566 TtrR, Response regulator Signal transduction mechanisms 115360835 Common - amino acid permease-associated region Bamb_6094 181 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 115360595 Pathogen - type III secretion apparatus protein, HrpE/YscL family Bamb_5852 5 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 115361060 Common - amidohydrolase Bamb_6319 168 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 115360910 Pathogen - hypothetical protein Bamb_6169 1 None None None 115361137 Pathogen - hypothetical protein Bamb_6396 1 None None None 115360439 Common - transaminase Bamb_5695 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 115360343 Common - Bile acid:sodium symporter Bamb_5599 128 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 115360551 Common - Amidohydrolase 3 Bamb_5808 98 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 115360808 Common - binding-protein-dependent transport systems inner membrane component Bamb_6067 212 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 115360698 Common - transcriptional regulator, TetR family Bamb_5956 72 COG1309 AcrR, Transcriptional regulator Transcription 115360688 Common - cyanate hydratase Bamb_5946 41 COG1513 CynS, Cyanate lyase Inorganic ion transport and metabolism 115361303 Common - transport-associated Bamb_6562 5 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 115361321 Common - Endoribonuclease L-PSP Bamb_6580 154 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 115361235 Common - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Bamb_6494 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 115360903 Common - Pyrrolo-quinoline quinone Bamb_6162 85 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 115360989 Common - excinuclease ABC, A subunit Bamb_6248 236 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 115360988 Common - two component transcriptional regulator, winged helix family Bamb_6247 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115361166 Common - Diaminopropionate ammonia-lyase Bamb_6425 59 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 115361173 Common - protein of unknown function DUF1330 Bamb_6432 48 COG5470 COG5470, Uncharacterized conserved protein Function unknown 115361069 Common - major facilitator superfamily MFS_1 Bamb_6328 22 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361152 Common - Aldehyde dehydrogenase (NAD(+)) Bamb_6411 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360973 Common - 3-oxoacyl-(acyl-carrier-protein) synthase III Bamb_6232 209 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 115361065 Common - extracellular solute-binding protein, family 1 Bamb_6324 79 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 115361221 Common - 2,4-diaminobutyrate 4-transaminase Bamb_6480 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 115361201 Common - extracellular solute-binding protein, family 3 Bamb_6460 147 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115360670 Common - FAD dependent oxidoreductase Bamb_5928 39 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 115360397 Common - short-chain dehydrogenase/reductase SDR Bamb_5653 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 115361007 Pathogen - hypothetical protein Bamb_6266 1 None None None 115360327 Common - HAD-superfamily hydrolase, subfamily IA, variant 3 Bamb_5583 185 COG0546 Gph, Predicted phosphatases General function prediction only 115361244 Common - dihydrolipoamide dehydrogenase Bamb_6503 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 115360941 Pathogen - hypothetical protein Bamb_6200 1 None None None 115360773 Common - Glycerone kinase Bamb_6032 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 115360784 Common - sodium/hydrogen exchanger Bamb_6043 180 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 115360522 Common pntA NAD(P) transhydrogenase subunit alpha Bamb_5778 164 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 115360767 Common - AMP-dependent synthetase and ligase Bamb_6026 219 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115360400 Common - transport-associated Bamb_5656 12 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 115360896 Common - General substrate transporter Bamb_6155 137 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360356 Common katE hydroperoxidase II Bamb_5612 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 115361076 Common - D-xylose ABC transporter, ATPase subunit Bamb_6335 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 115360872 Common - ABC-2 type transporter Bamb_6131 10 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 115360849 Common - major facilitator superfamily MFS_1 Bamb_6108 140 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 115360566 Common - NADH:flavin oxidoreductase/NADH oxidase Bamb_5823 176 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 115360755 Common - protein of unknown function DUF1656 Bamb_6014 11 None None None 115361045 Common - Serine-type D-Ala-D-Ala carboxypeptidase Bamb_6304 135 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 115361223 Common - Oleoyl-(acyl-carrier-protein) hydrolase Bamb_6482 50 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 115361167 Common - Endoribonuclease L-PSP Bamb_6426 94 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 115360491 Pathogen - hypothetical protein Bamb_5747 1 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 115360925 Common - 3-deoxy-D-manno-octulosonate cytidylyltransferase Bamb_6184 137 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 115360776 Common - luciferase family protein Bamb_6035 101 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 115360550 Common - DoxX family protein Bamb_5807 27 COG2259 COG2259, Predicted membrane protein Function unknown 115360470 Common - transcriptional regulator, AraC family Bamb_5726 120 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360543 Pathogen - hypothetical protein Bamb_5799 1 None None None 115361119 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Bamb_6378 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 115360834 Common - transcriptional regulator, AraC family Bamb_6093 52 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360345 Common - transcriptional regulator, ArsR family Bamb_5601 74 COG0640 ArsR, Predicted transcriptional regulators Transcription 115360511 Common - beta-lactamase domain protein Bamb_5767 6 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 115360617 Pathogen - pilM; PilM Bamb_5874 1 None None None 115360489 Pathogen - hypothetical protein Bamb_5745 1 None None None 115360433 Common - molybdopterin biosynthesis MoaE Bamb_5689 145 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 115361124 Common - hypothetical protein Bamb_6383 2 None None None 115361296 Pathogen - phosphocarrier HPr protein Bamb_6555 1 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 115361123 Common - histone family protein nucleoid-structuring protein H-NS Bamb_6382 8 COG2916 Hns, DNA-binding protein H-NS General function prediction only 115361330 Pathogen - hypothetical protein Bamb_6589 1 None None None 115360868 Common - methyl-accepting chemotaxis sensory transducer Bamb_6127 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 115360392 Common - glycosyl transferase, family 9 Bamb_5648 72 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 115360462 Common - transcriptional regulator, AraC family Bamb_5718 49 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361028 Pathogen - Flp/Fap pilin component Bamb_6287 1 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 115361128 Common - metal-dependent phosphohydrolase, HD subdomain Bamb_6387 23 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 115360388 Common - glycosyl transferase, family 2 Bamb_5644 89 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 115361058 Common - Antibiotic biosynthesis monooxygenase Bamb_6317 2 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 115360636 Pathogen - hypothetical protein Bamb_5893 3 None None None 115361115 Common - Citrate synthase Bamb_6374 86 COG0372 GltA, Citrate synthase Energy production and conversion 115360423 Pathogen - hypothetical protein Bamb_5679 1 None None None 115360695 Common - transcriptional regulator, TetR family Bamb_5953 92 COG1309 AcrR, Transcriptional regulator Transcription 115360429 Common - cytochrome bd ubiquinol oxidase, subunit I Bamb_5685 161 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 115360797 Common - Thioesterase Bamb_6056 49 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 115360827 Common - DoxX family protein Bamb_6086 84 COG2259 COG2259, Predicted membrane protein Function unknown 115360375 Common - phage SPO1 DNA polymerase-related protein Bamb_5631 153 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 115360728 Common - heavy metal sensor signal transduction histidine kinase Bamb_5987 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 115360662 Common - beta-ketoacyl synthase Bamb_5920 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115361013 Common - transcriptional regulator, LysR family Bamb_6272 191 COG0583 LysR, Transcriptional regulator Transcription 115360402 Common - PAS/PAC sensor hybrid histidine kinase Bamb_5658 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 115360496 Common - major facilitator superfamily MFS_1 Bamb_5752 211 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360998 Common - Endoribonuclease L-PSP Bamb_6257 28 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 115360815 Common - LrgA family protein Bamb_6074 62 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 115361079 Common - aldo/keto reductase Bamb_6338 155 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 115360745 Common - Zn-dependent hydrolase of the beta-lactamase fold-like protein Bamb_6004 93 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 115360684 Common - AMP-dependent synthetase and ligase Bamb_5942 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115360677 Common - hypothetical protein Bamb_5935 20 COG3644 COG3644, Uncharacterized protein conserved in bacteria Function unknown 115360529 Common - two component transcriptional regulator, winged helix family Bamb_5785 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115360454 Common - nitrate reductase, beta subunit Bamb_5710 149 COG1140 NarY, Nitrate reductase beta subunit Energy production and conversion 115360790 Common - chlorinating enzyme Bamb_6049 11 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 115360820 Common - transcriptional regulator, LysR family Bamb_6079 176 COG0583 LysR, Transcriptional regulator Transcription 115361035 Common - hypothetical protein Bamb_6294 20 COG4655 COG4655, Predicted membrane protein Function unknown 115361170 Common - aspartate racemase Bamb_6429 83 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 115360333 Pathogen - hypothetical protein Bamb_5589 1 None None None 115360856 Common - Glycosyl hydrolase family 32, C-terminal domain protein Bamb_6115 17 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 115360966 Common - short-chain dehydrogenase/reductase SDR Bamb_6225 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360502 Common - dihydrodipicolinate synthetase Bamb_5758 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 115360813 Common - amidase Bamb_6072 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 115360564 Common - transcriptional regulator, LysR family Bamb_5821 179 COG0583 LysR, Transcriptional regulator Transcription 115361233 Common - glycosyl transferase, group 1 Bamb_6492 135 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 115360692 Pathogen - hypothetical protein Bamb_5950 1 None None None 115361255 Common - alanine racemase Bamb_6514 186 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 115360600 Common - type III secretion system protein Bamb_5857 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 115361309 Common - Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein Bamb_6568 115 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 115361022 Common - L-carnitine dehydratase/bile acid-inducible protein F Bamb_6281 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 115360854 Pathogen - hypothetical protein Bamb_6113 1 None None None 115360602 Pathogen - hypothetical protein Bamb_5859 4 None None None 115360569 Common - transcriptional regulator, winged helix family Bamb_5826 64 COG3903 COG3903, Predicted ATPase General function prediction only 115360464 Common - hypothetical protein Bamb_5720 4 None None None 115360801 Pathogen - hypothetical protein Bamb_6060 1 None None None 115361138 Pathogen - hypothetical protein Bamb_6397 1 None None None 115360766 Common - beta-lactamase domain protein Bamb_6025 78 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 115360625 Common - transcriptional regulator, AraC family Bamb_5882 36 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360623 Common - type IVB pilus formation outer membrane protein, R64 PilN family Bamb_5880 75 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 115360348 Common - hypothetical protein Bamb_5604 2 None None None 115360669 Common - Aspartyl/Asparaginyl beta-hydroxylase Bamb_5927 20 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 115360571 Common - beta-lactamase domain protein Bamb_5828 74 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 115360645 Common - allantoate amidohydrolase Bamb_5903 84 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 115361135 Pathogen - hypothetical protein Bamb_6394 2 None None None 115360370 Common - transcriptional regulator, LysR family Bamb_5626 191 COG0583 LysR, Transcriptional regulator Transcription 115361169 Common - transcriptional regulator, LysR family Bamb_6428 190 COG0583 LysR, Transcriptional regulator Transcription 115360416 Common - acetylornithine deacetylase Bamb_5672 209 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 115360748 Common - hypothetical protein Bamb_6007 12 None None None 115360437 Common - transcriptional regulator, LysR family Bamb_5693 164 COG0583 LysR, Transcriptional regulator Transcription 115360578 Common - transcriptional regulator, histidine utilization repressor, GntR family Bamb_5835 127 COG2188 PhnF, Transcriptional regulators Transcription 115361172 Common - short-chain dehydrogenase/reductase SDR Bamb_6431 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360982 Common - UDP-glucuronosyl/UDP-glucosyltransferase Bamb_6241 43 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 115360377 Common - hypothetical protein Bamb_5633 5 None None None 115361018 Common - periplasmic sensor signal transduction histidine kinase Bamb_6277 223 COG3300 COG3300, MHYT domain (predicted integral membrane sensor domain) Signal transduction mechanisms 115360538 Common - alkylhydroperoxidase like protein, AhpD family Bamb_5794 82 COG2128 COG2128, Uncharacterized conserved protein Function unknown 115361268 Common - transcriptional regulator, LysR family Bamb_6527 104 COG0583 LysR, Transcriptional regulator Transcription 115360795 Pathogen - hypothetical protein Bamb_6054 1 None None None 115360956 Common - transcriptional regulator, LysR family Bamb_6215 168 COG0583 LysR, Transcriptional regulator Transcription 115360686 Common - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Bamb_5944 196 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 115360778 Common - transcriptional regulator, LysR family Bamb_6037 171 COG0583 LysR, Transcriptional regulator Transcription 115360452 Common - respiratory nitrate reductase, gamma subunit Bamb_5708 57 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 115360836 Common - hypothetical protein Bamb_6095 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 115360336 Common - glycogen branching enzyme Bamb_5592 142 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 115361263 Common - transposase and inactivated derivatives Bamb_6522 13 None None None 115360472 Common - major facilitator superfamily MFS_1 Bamb_5728 128 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361185 Common - amine oxidase Bamb_6444 39 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 115361140 Common - hypothetical protein Bamb_6399 3 None None None 115360894 Common - transcriptional regulator, LysR family Bamb_6153 174 COG0583 LysR, Transcriptional regulator Transcription 115361239 Common - porin, Gram-negative type Bamb_6498 22 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115360901 Common - High potential iron-sulfur protein Bamb_6160 9 None None None 115361246 Common - 3,4-dihydroxy-2-butanone 4-phosphate synthase Bamb_6505 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 115360508 Pathogen - hypothetical protein Bamb_5764 2 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 115361210 Common - cyclic peptide transporter Bamb_6469 249 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 115361029 Common - Flp/Fap pilin component Bamb_6288 2 COG3847 Flp, Flp pilus assembly protein, pilin Flp Intracellular trafficking and secretion 115361326 Common - catechol 1,2-dioxygenase Bamb_6585 49 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 115360952 Common - heme/copper-type cytochrome/quinol oxidase subunit 3-like protein Bamb_6211 11 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 115361264 Common - transcriptional regulator, LysR family Bamb_6523 182 COG0583 LysR, Transcriptional regulator Transcription 115360446 Common - hypothetical protein Bamb_5702 24 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 115360961 Common - short-chain dehydrogenase/reductase SDR Bamb_6220 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360330 Pathogen - hypothetical protein Bamb_5586 1 None None None 115361020 Common - transcriptional regulator, LysR family Bamb_6279 173 COG0583 LysR, Transcriptional regulator Transcription 115360607 Pathogen - sctD; secretion-associated protein Bamb_5864 4 None None None 115361219 Common - beta-ketoacyl synthase Bamb_6478 234 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360972 Common - phosphopantetheine-binding Bamb_6231 2 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115360585 Common - catalase/peroxidase HPI Bamb_5842 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 115361312 Common - short chain dehydrogenase Bamb_6571 225 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 115360613 Common - PAS/PAC sensor signal transduction histidine kinase Bamb_5870 203 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 115361126 Common - Cupin 2, conserved barrel domain protein Bamb_6385 21 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 115360927 Pathogen - glycosyl hydrolase, BNR repeat-containing protein Bamb_6186 3 None None None 115360920 Common - hypothetical protein Bamb_6179 3 None None None 115361100 Common - transcriptional regulator, AraC family Bamb_6359 121 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360888 Common - hypothetical protein Bamb_6147 13 None None None 115360498 Common - pyruvate carboxylase Bamb_5754 240 COG1038 PycA, Pyruvate carboxylase Energy production and conversion 115361328 Common - muconate and chloromuconate cycloisomerases Bamb_6587 122 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 115361271 Common - MaoC domain protein dehydratase Bamb_6530 92 COG2030 MaoC, Acyl dehydratase Lipid metabolism 115360781 Common - transcriptional regulator, LuxR family Bamb_6040 96 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 115360518 Common - transcriptional regulator, LysR family Bamb_5774 114 COG0583 LysR, Transcriptional regulator Transcription 115360536 Pathogen - hypothetical protein Bamb_5792 1 None None None 115360615 Common - type II secretion system protein E Bamb_5872 214 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 115361160 Common - transcriptional regulator, LysR family Bamb_6419 173 COG0583 LysR, Transcriptional regulator Transcription 115361150 Common - transcriptional regulator, AraC family Bamb_6409 90 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361183 Common - short-chain dehydrogenase/reductase SDR Bamb_6442 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115361093 Common - methyl-accepting chemotaxis sensory transducer Bamb_6352 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 115361062 Common - porin, Gram-negative type Bamb_6321 34 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115360976 Common - beta-ketoacyl synthase Bamb_6235 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360719 Common - hypothetical protein Bamb_5978 41 COG4717 COG4717, Uncharacterized conserved protein Function unknown 115361142 Pathogen - hypothetical protein Bamb_6401 1 None None None 115360395 Common - glycosyl transferase, family 9 Bamb_5651 50 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 115360958 Common - aspartate racemase Bamb_6217 82 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 115361204 Common - MmgE/PrpD family protein Bamb_6463 53 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 115360818 Common - flavoprotein WrbA Bamb_6077 122 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 115360672 Common - Carbamoyltransferase Bamb_5930 52 COG2192 COG2192, Predicted carbamoyl transferase, NodU family Posttranslational modification, protein turnover, chaperones 115360477 Common - OsmC family protein Bamb_5733 87 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 115360358 Pathogen - protein of unknown function DUF1328 Bamb_5614 1 None None None 115360898 Common - porin, Gram-negative type Bamb_6157 21 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115360943 Common - OmpA/MotB domain protein Bamb_6202 151 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 115360494 Common - molybdopterin dehydrogenase, FAD-binding Bamb_5750 74 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 115361047 Common - flavin reductase domain protein, FMN-binding Bamb_6306 107 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 115360968 Common - hypothetical protein Bamb_6227 5 None None None 115361158 Common - Formyl-CoA transferase Bamb_6417 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 115361078 Common - transcriptional regulator, LysR family Bamb_6337 172 COG0583 LysR, Transcriptional regulator Transcription 115360525 Common - transcriptional regulator, AraC family Bamb_5781 69 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360938 Common - periplasmic sensor signal transduction histidine kinase Bamb_6197 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 115360754 Common - efflux transporter, RND family, MFP subunit Bamb_6013 126 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 115361298 Common - GCN5-related N-acetyltransferase Bamb_6557 58 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 115360858 Common - hypothetical protein Bamb_6117 2 None None None 115360431 Common - molybdenum cofactor synthesis domain Bamb_5687 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 115360771 Common - transcriptional regulator, AraC family Bamb_6030 77 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361081 Common - NmrA family protein Bamb_6340 130 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 115361109 Common - two component transcriptional regulator, AraC family Bamb_6368 226 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115360524 Common - Dihydrokaempferol 4-reductase Bamb_5780 100 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 115360863 Pathogen - hypothetical protein Bamb_6122 1 None None None 115360713 Common - transcriptional regulator, AraC family Bamb_5972 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360360 Common - RNA polymerase factor sigma-54 Bamb_5616 144 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 115360721 Pathogen - Late embryogenesis abundant protein Bamb_5980 1 COG5038 COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain General function prediction only 115360367 Common - metabolite/H+ symporter, major facilitator superfamily (MFS) Bamb_5623 126 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360427 Common - protein of unknown function UPF0187 Bamb_5683 55 COG3781 COG3781, Predicted membrane protein Function unknown 115360541 Common - glutathione-dependent formaldehyde-activating enzyme Bamb_5797 17 COG3791 COG3791, Uncharacterized conserved protein Function unknown 115360418 Common - Endoribonuclease L-PSP Bamb_5674 131 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 115360660 Common - NADH:flavin oxidoreductase/NADH oxidase Bamb_5918 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 115360851 Common - alpha/beta hydrolase fold Bamb_6110 97 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115360404 Common - Alcohol dehydrogenase GroES domain protein Bamb_5660 211 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 115361213 Common - amino acid adenylation domain Bamb_6472 220 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360655 Common - shikimate 5-dehydrogenase Bamb_5913 188 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 115361110 Common - YadA C-terminal domain protein Bamb_6369 89 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 115360697 Common - OsmC family protein Bamb_5955 91 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 115360599 Pathogen - hypothetical protein Bamb_5856 3 None None None 115360911 Common - transcriptional regulator, AraC family Bamb_6170 95 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 115360741 Common - hypothetical protein Bamb_6000 18 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 115361016 Common - hypothetical protein Bamb_6275 2 None None None 115360466 Common - hypothetical protein Bamb_5722 8 None None None 115360979 Common - periplasmic sensor signal transduction histidine kinase Bamb_6238 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 115360482 Pathogen - hypothetical protein Bamb_5738 1 None None None 115360576 Common - Patatin Bamb_5833 71 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 115360435 Common - Glutathione S-transferase, N-terminal domain Bamb_5691 94 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 115360414 Common - permease for cytosine/purines, uracil, thiamine, allantoin Bamb_5670 27 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 115360914 Common - polysaccharide export protein Bamb_6173 122 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 115360647 Common - Oxidoreductase FAD-binding domain protein Bamb_5905 55 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 115360985 Common - OmpA/MotB domain protein Bamb_6244 93 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 115360555 Common - transcriptional regulator, LysR family Bamb_5812 154 COG0583 LysR, Transcriptional regulator Transcription 115360984 Common - protein of unknown function DUF88 Bamb_6243 57 COG1432 COG1432, Uncharacterized conserved protein Function unknown 115361224 Common - polysaccharide export protein Bamb_6483 116 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 115360657 Common - condensation domain protein Bamb_5915 46 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360878 Pathogen - hypothetical protein Bamb_6137 2 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 115361162 Common - 2-dehydropantoate 2-reductase Bamb_6421 77 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 115361253 Common - AMP-dependent synthetase and ligase Bamb_6512 206 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 115360479 Pathogen - protein of unknown function DUF861, cupin_3 Bamb_5735 1 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 115360583 Common - extracellular solute-binding protein, family 3 Bamb_5840 153 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115361132 Pathogen - hypothetical protein Bamb_6391 1 None None None 115360847 Pathogen - hypothetical protein Bamb_6106 1 None None None 115360762 Common - Succinylglutamate desuccinylase/aspartoacylase Bamb_6021 45 COG3608 COG3608, Predicted deacylase General function prediction only 115361289 Common - transcriptional regulator, AraC family Bamb_6548 66 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361011 Common - acyl-CoA dehydrogenase domain protein Bamb_6270 152 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 115360425 Pathogen - hypothetical protein Bamb_5681 5 None None None 115360621 Pathogen - hypothetical protein Bamb_5878 1 None None None 115361307 Common - hypothetical protein Bamb_6566 6 None None None 115360970 Pathogen - hypothetical protein Bamb_6229 1 None None None 115360634 Common - formyl transferase domain protein Bamb_5891 182 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 115361206 Common - FAD linked oxidase domain protein Bamb_6465 13 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 115361230 Pathogen - hypothetical protein Bamb_6489 1 None None None 115360805 Common - transcriptional regulator, LuxR family Bamb_6064 9 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 115361051 Common - transcriptional regulator, AraC family Bamb_6310 107 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361091 Common - GCN5-related N-acetyltransferase Bamb_6350 34 COG3153 COG3153, Predicted acetyltransferase General function prediction only 115360764 Common - Succinate-semialdehyde dehydrogenase (NAD(P)(+)) Bamb_6023 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360630 Common - bacteriophage/transposase fusion protein Bamb_5887 35 None None None 115360900 Common - RNA polymerase, sigma 28 subunit Bamb_6159 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 115361005 Common - DEAD/DEAH box helicase domain protein Bamb_6264 236 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 115360803 Common - hypothetical protein Bamb_6062 2 COG4520 LipA, Surface antigen Cell envelope biogenesis, outer membrane 115360963 Common - beta-ketoacyl synthase Bamb_6222 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360480 Common - condensation domain protein Bamb_5736 12 None None None 115360736 Common - aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein Bamb_5995 96 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 115360605 Common - type III secretion protein, HrpO family Bamb_5862 16 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 115361261 Common - hypothetical protein Bamb_6520 2 None None None 115361180 Common - protein of unknown function DUF6, transmembrane Bamb_6439 25 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 115360757 Common - transcriptional regulator, MarR family Bamb_6016 72 COG1846 MarR, Transcriptional regulators Transcription 115361149 Common - transcriptional regulator, AraC family Bamb_6408 52 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360892 Common - fatty acid desaturase Bamb_6151 8 COG3239 DesA, Fatty acid desaturase Lipid metabolism 115361237 Pathogen - hypothetical protein Bamb_6496 1 None None None 115361086 Common - diguanylate cyclase Bamb_6345 175 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 115360506 Common - glycine betaine/L-proline ABC transporter, ATPase subunit Bamb_5762 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 115360590 Common - transcriptional regulator, LysR family Bamb_5847 177 COG0583 LysR, Transcriptional regulator Transcription 115361191 Common - transcriptional regulator, TetR family Bamb_6450 9 COG1309 AcrR, Transcriptional regulator Transcription 115360444 Common - serine/threonine protein kinase Bamb_5700 75 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 115360649 Pathogen - hypothetical protein Bamb_5907 1 None None None 115360865 Common - Tripartite ATP-independent periplasmic transporter, DctQ component Bamb_6124 53 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 115361282 Pathogen - oxidoreductase Bamb_6541 1 None None None 115361286 Common - hypothetical protein Bamb_6545 17 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 115360838 Common - MlrC domain protein Bamb_6097 31 COG5476 COG5476, Uncharacterized conserved protein Function unknown 115361242 Common - 2-oxoacid dehydrogenase subunit E1 Bamb_6501 148 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 115360603 Common - type III secretion system apparatus protein YscQ/HrcQ Bamb_5860 11 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 115360362 Pathogen - hypothetical protein Bamb_5618 1 None None None 115360974 Common - 2-oxoacid ferredoxin oxidoreductase Bamb_6233 92 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 115361097 Common - binding-protein-dependent transport systems inner membrane component Bamb_6356 188 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 115361273 Common - shikimate 5-dehydrogenase Bamb_6532 198 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 115360731 Common - hypothetical protein Bamb_5990 23 COG5642 COG5642, Uncharacterized conserved protein Function unknown 115360629 Common - hypothetical protein Bamb_5886 5 COG4907 COG4907, Predicted membrane protein Function unknown 115360879 Common - AMP-dependent synthetase and ligase Bamb_6138 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115361084 Common - protein of unknown function DUF72 Bamb_6343 91 COG1801 COG1801, Uncharacterized conserved protein Function unknown 115361260 Common - protein of unknown function DUF879 Bamb_6519 45 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 115360882 Common - hypothetical protein Bamb_6141 13 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 115360679 Common - porin, Gram-negative type Bamb_5937 23 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115361196 Common - GCN5-related N-acetyltransferase Bamb_6455 46 COG0456 RimI, Acetyltransferases General function prediction only 115360457 Pathogen - hypothetical protein Bamb_5713 1 None None None 115360559 Common - alpha/beta hydrolase fold Bamb_5816 171 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115361214 Common - amino acid adenylation domain Bamb_6473 220 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360992 Common - transcriptional regulator, LysR family Bamb_6251 186 COG0583 LysR, Transcriptional regulator Transcription 115361063 Common - transcriptional regulator, LacI family Bamb_6322 125 COG1609 PurR, Transcriptional regulators Transcription 115360737 Common - transcriptional regulator, LysR family Bamb_5996 132 COG0583 LysR, Transcriptional regulator Transcription 115361163 Common - major facilitator superfamily MFS_1 Bamb_6422 127 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361322 Common benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase Bamb_6581 233 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360907 Common - pyrroloquinoline quinone biosynthesis protein PqqC Bamb_6166 35 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 115361281 Common - HipA domain protein Bamb_6540 72 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 115361145 Common - short chain dehydrogenase Bamb_6404 232 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 115360752 Common - Molybdenum-pterin binding Bamb_6011 69 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 115360369 Common - sodium:dicarboxylate symporter Bamb_5625 145 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 115361300 Common - drug resistance transporter, EmrB/QacA subfamily Bamb_6559 210 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361277 Common - Taurine dioxygenase Bamb_6536 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 115361181 Common - cysteine synthase A Bamb_6440 218 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 115360742 Common - parB-like partition proteins Bamb_6001 168 COG1475 Spo0J, Predicted transcriptional regulators Transcription 115360761 Common - peptidase M24 Bamb_6020 133 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 115361249 Common - Enoyl-CoA hydratase/isomerase Bamb_6508 175 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 115361258 Common - transposase and inactivated derivatives Bamb_6517 21 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 115360344 Common - protein tyrosine phosphatase Bamb_5600 125 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 115360567 Common - metal-dependent phosphohydrolase Bamb_5824 19 None None None 115360689 Common - protein of unknown function DUF1348 Bamb_5947 49 COG3558 COG3558, Uncharacterized protein conserved in bacteria Function unknown 115361229 Pathogen - O-antigen polymerase Bamb_6488 1 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 115360609 Pathogen - hypothetical protein Bamb_5866 1 None None None 115360476 Common - Abortive infection protein Bamb_5732 15 None None None 115360703 Common - Rieske (2Fe-2S) domain protein Bamb_5962 87 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 115360845 Common - squalene-hopene cyclase Bamb_6104 40 COG1657 SqhC, Squalene cyclase Lipid metabolism 115361304 Common - hypothetical protein Bamb_6563 18 None None None 115360620 Common - type II secretion system protein E Bamb_5877 208 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 115360575 Common - hypothetical protein Bamb_5832 31 COG4339 COG4339, Uncharacterized protein conserved in bacteria Function unknown 115360533 Common - OsmC family protein Bamb_5789 79 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 115360913 Common - Undecaprenyl-phosphate galactose phosphotransferase Bamb_6172 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 115360652 Common - transcriptional regulator, LuxR family Bamb_5910 49 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 115361220 Common - Taurine catabolism dioxygenase TauD/TfdA Bamb_6479 22 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 115361285 Common - nitrile hydratase, alpha subunit Bamb_6544 21 None None None 115360959 Common - MaoC domain protein dehydratase Bamb_6218 96 COG2030 MaoC, Acyl dehydratase Lipid metabolism 115360763 Common - transcriptional regulator, AsnC family Bamb_6022 151 COG1522 Lrp, Transcriptional regulators Transcription 115360830 Common - histone family protein nucleoid-structuring protein H-NS Bamb_6089 5 COG2916 Hns, DNA-binding protein H-NS General function prediction only 115360780 Common - FAD linked oxidase domain protein Bamb_6039 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 115361017 Common - response regulator receiver modulated metal dependent phosphohydrolase Bamb_6276 217 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 115360987 Pathogen - hypothetical protein Bamb_6246 1 None None None 115360413 Common - oxidoreductase alpha (molybdopterin) subunit Bamb_5669 178 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 115360709 Common - transcriptional regulator, TetR family Bamb_5968 65 COG1309 AcrR, Transcriptional regulator Transcription 115360810 Common - hypothetical protein Bamb_6069 3 None None None 115360887 Pathogen - hypothetical protein Bamb_6146 1 None None None 115361178 Common - hypothetical protein Bamb_6437 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 115360641 Common - ferredoxin Bamb_5899 108 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 115360654 Common - Xylose isomerase domain protein TIM barrel Bamb_5912 30 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 115360787 Common - Succinylglutamate desuccinylase/aspartoacylase Bamb_6046 6 COG2988 COG2988, Succinylglutamate desuccinylase Amino acid transport and metabolism 115361034 Common - hypothetical protein Bamb_6293 6 None None None 115360699 Common - lipoprotein, putative Bamb_5957 3 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 115360722 Pathogen - hypothetical protein Bamb_5981 1 None None None 115360548 Pathogen - hypothetical protein Bamb_5805 1 None None None 115361103 Common - FAD dependent oxidoreductase Bamb_6362 92 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 115360718 Common - metal dependent phosphohydrolase Bamb_5977 79 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 115360384 Common - glycosyl transferase, group 1 Bamb_5640 216 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 115360977 Common - Rieske (2Fe-2S) domain protein Bamb_6236 93 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 115360730 Common - hypothetical protein Bamb_5989 31 COG5654 COG5654, Uncharacterized conserved protein Function unknown 115361072 Common - transcriptional regulator, AraC family Bamb_6331 51 COG1609 PurR, Transcriptional regulators Transcription 115361112 Common - hypothetical protein Bamb_6371 177 None None None 115360372 Pathogen - hypothetical protein Bamb_5628 1 None None None 115360993 Common - sodium:dicarboxylate symporter Bamb_6252 163 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 115360867 Common - hypothetical protein Bamb_6126 56 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 115360581 Common - polar amino acid ABC transporter, inner membrane subunit Bamb_5838 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 115360527 Common - transcriptional regulator, AraC family Bamb_5783 71 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115360723 Common - Gamma-glutamyltransferase Bamb_5982 147 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 115360666 Common - beta-ketoacyl synthase Bamb_5924 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360705 Common - NCS1 nucleoside transporter family Bamb_5964 78 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 115360936 Common - inner-membrane translocator Bamb_6195 113 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 115360664 Common - beta-ketoacyl synthase Bamb_5922 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360337 Common - glycogen debranching enzyme GlgX Bamb_5593 149 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 115361202 Common - polysaccharide deacetylase Bamb_6461 113 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 115360825 Common - plasmid stabilization system Bamb_6084 32 COG3668 ParE, Plasmid stabilization system protein General function prediction only 115360794 Common - autoinducer synthesis protein Bamb_6053 24 COG3916 LasI, N-acyl-L-homoserine lactone synthetase Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 115360393 Common - glycosyl transferase, family 2 Bamb_5649 105 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 115361155 Common - glucose-methanol-choline oxidoreductase Bamb_6414 95 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 115360516 Common - Electron-transferring-flavoprotein dehydrogenase Bamb_5772 110 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 115361104 Common - Betaine-aldehyde dehydrogenase Bamb_6363 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360696 Common - Alpha/beta hydrolase fold-3 domain protein Bamb_5954 131 COG0657 Aes, Esterase/lipase Lipid metabolism 115361226 Common - putative oxidoreductase Bamb_6485 9 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 115361042 Common - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Bamb_6301 110 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 115360850 Common - transcriptional regulator, TetR family Bamb_6109 58 COG1309 AcrR, Transcriptional regulator Transcription 115361310 Common - pyruvate decarboxylase Bamb_6569 220 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 115360674 Common - quinate/shikimate dehydrogenase, putative Bamb_5932 60 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 115361053 Common - regulator protein FrmR Bamb_6312 43 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 115360807 Common - spermidine/putrescine ABC transporter ATPase subunit Bamb_6066 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 115360921 Common - glycosyl transferase, group 1 Bamb_6180 135 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 115360341 Common - GCN5-related N-acetyltransferase Bamb_5597 15 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 115360321 Common - ABC transporter related Bamb_5577 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 115360632 Pathogen - hypothetical protein Bamb_5889 1 None None None 115360468 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Bamb_5724 58 COG3607 COG3607, Predicted lactoylglutathione lyase General function prediction only 115360325 Common - helix-turn-helix, Fis-type Bamb_5581 42 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 115360399 Common - response regulator receiver protein Bamb_5655 249 COG5265 ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components Posttranslational modification, protein turnover, chaperones 115361121 Common - putative outer membrane protein Bamb_6380 5 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 115360483 Common - short-chain dehydrogenase/reductase SDR Bamb_5739 236 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 115360843 Common - alpha/beta hydrolase fold Bamb_6102 142 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115361292 Common - protein of unknown function DUF1275 Bamb_6551 27 COG3619 COG3619, Predicted membrane protein Function unknown 115361003 Common - lipase, class 3 Bamb_6262 4 COG3675 COG3675, Predicted lipase Lipid metabolism 115360493 Common - transcriptional regulator, TetR family Bamb_5749 93 COG1309 AcrR, Transcriptional regulator Transcription 115361147 Common - major facilitator superfamily MFS_1 Bamb_6406 20 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361198 Common - argininosuccinate lyase Bamb_6457 216 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 115360331 Common - phospholipase D/Transphosphatidylase Bamb_5587 86 COG0398 COG0398, Uncharacterized conserved protein Function unknown 115361055 Common - porin, Gram-negative type Bamb_6314 24 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115360832 Common - hypothetical protein Bamb_6091 3 None None None 115361294 Common - Spermidine synthase-like protein Bamb_6553 56 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 115360743 Common - Cobyrinic acid a,c-diamide synthase Bamb_6002 208 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 115360905 Common - GAF modulated sigma54 specific transcriptional regulator, Fis family Bamb_6164 175 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 115361279 Common - MgtC/SapB transporter Bamb_6538 6 COG1285 SapB, Uncharacterized membrane protein Function unknown 115360909 Common - pyrroloquinoline quinone biosynthesis protein PqqE Bamb_6168 142 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 115361095 Common - extracellular solute-binding protein, family 5 Bamb_6354 164 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 115361089 Common - hypothetical protein Bamb_6348 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 115360786 Pathogen - hypothetical protein Bamb_6045 1 None None None 115360960 Common - Carboxymuconolactone decarboxylase Bamb_6219 53 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 115361275 Common - ABC transporter related Bamb_6534 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 115360687 Common - Carbonate dehydratase Bamb_5945 157 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 115361240 Common - major facilitator superfamily MFS_1 Bamb_6499 131 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360363 Pathogen - hypothetical protein Bamb_5619 1 None None None 115361038 Common - response regulator receiver protein Bamb_6297 70 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 115360733 Common - transcriptional regulator, AraC family Bamb_5992 142 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 115360869 Pathogen - hypothetical protein Bamb_6128 1 None None None 115360877 Common - acyl-CoA dehydrogenase domain protein Bamb_6136 139 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 115360880 Common - Orn/DAP/Arg decarboxylase 2 Bamb_6139 43 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 115361266 Pathogen - hypothetical protein Bamb_6525 1 None None None 115361188 Common - hypothetical protein Bamb_6447 9 None None None 115360640 Common - major facilitator superfamily MFS_1 Bamb_5898 147 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361316 Common - cytochrome c, class I Bamb_6575 60 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 115360915 Common - protein tyrosine phosphatase Bamb_6174 110 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 115360592 Common - type III secretion protein SpaR/YscT/HrcT Bamb_5849 53 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 115360552 Common - protein of unknown function DUF1427 Bamb_5809 16 COG4317 COG4317, Uncharacterized protein conserved in bacteria Function unknown 115361324 Common - 2-chlorobenzoate 1,2-dioxygenase Bamb_6583 25 COG5517 COG5517, Small subunit of phenylpropionate dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 115360809 Common - binding-protein-dependent transport systems inner membrane component Bamb_6068 201 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 115360800 Common - transcriptional regulator, LysR family Bamb_6059 125 COG0583 LysR, Transcriptional regulator Transcription 115360586 Common - amidohydrolase Bamb_5843 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 115360981 Common - condensation domain protein Bamb_6240 6 None None None 115360438 Common - Lysine exporter protein (LYSE/YGGA) Bamb_5694 124 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 115360557 Common - alpha/beta hydrolase fold Bamb_5814 93 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115361320 Common - acriflavin resistance protein Bamb_6579 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 115360725 Common - acriflavin resistance protein Bamb_5984 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 115360980 Common - UDP-glucuronosyl/UDP-glucosyltransferase Bamb_6239 44 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 115360487 Common - ATP-binding region, ATPase domain protein domain protein Bamb_5743 222 COG3899 COG3899, Predicted ATPase General function prediction only 115360411 Pathogen - hypothetical protein Bamb_5667 1 None None None 115360573 Common - hypothetical protein Bamb_5830 21 None None None 115360601 Common - type III secretion protein, HrcV family Bamb_5858 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 115360777 Common - Lysine exporter protein (LYSE/YGGA) Bamb_6036 119 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 115361008 Common - putative signal peptide protein Bamb_6267 6 None None None 115360690 Pathogen - hypothetical protein Bamb_5948 1 None None None 115360503 Common - Glycine hydroxymethyltransferase Bamb_5759 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 115361256 Common - major facilitator family transporter Bamb_6515 11 None None None 115361066 Common - binding-protein-dependent transport systems inner membrane component Bamb_6325 149 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 115361234 Common - virulence factor MVIN family protein Bamb_6493 101 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 115360398 Common - hypothetical protein Bamb_5654 4 None None None 115361090 Common - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Bamb_6349 161 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 115360474 Common - putative transmembrane anti-sigma factor Bamb_5730 4 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 115361174 Common - aminotransferase Bamb_6433 178 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 115361130 Common - heat shock protein Hsp20 Bamb_6389 124 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 115360627 Pathogen - hypothetical protein Bamb_5884 1 None None None 115361015 Common - Antibiotic biosynthesis monooxygenase Bamb_6274 31 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 115361165 Common - transcriptional regulator, LysR family Bamb_6424 160 COG0583 LysR, Transcriptional regulator Transcription 115360680 Common - transport-associated Bamb_5938 2 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 115360792 Common - amino acid adenylation domain Bamb_6051 209 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360420 Common - hypothetical protein Bamb_5676 23 COG5611 COG5611, Predicted nucleic-acid-binding protein, contains PIN domain General function prediction only 115361200 Common - ABC transporter related Bamb_6459 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 115361044 Pathogen - hypothetical protein Bamb_6303 1 None None None 115361074 Common - xylulokinase Bamb_6333 180 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 115360406 Common - transcriptional regulator, GntR family Bamb_5662 222 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 115361302 Pathogen - hypothetical protein Bamb_6561 3 COG2427 COG2427, Uncharacterized conserved protein Function unknown 115360682 Common - major facilitator superfamily MFS_1 Bamb_5940 153 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 115360520 Common - Pirin domain protein domain protein Bamb_5776 99 COG1741 COG1741, Pirin-related protein General function prediction only 115360374 Common - response regulator receiver protein Bamb_5630 169 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115361297 Pathogen - hypothetical protein Bamb_6556 1 None None None 115360461 Common - hypothetical protein Bamb_5717 3 None None None 115361068 Common - Beta-galactosidase Bamb_6327 39 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 115361001 Common - ThiJ/PfpI domain protein Bamb_6260 102 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 115360934 Common - periplasmic binding protein/LacI transcriptional regulator Bamb_6193 106 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 115361318 Common - transcriptional regulator, TetR family Bamb_6577 36 COG1309 AcrR, Transcriptional regulator Transcription 115360823 Pathogen - hypothetical protein Bamb_6082 1 None None None 115360521 Common - putative transcriptional regulator protein Bamb_5777 6 None None None 115361290 Common - hypothetical protein Bamb_6549 15 None None None 115361116 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Bamb_6375 5 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 115360546 Common - ribosomal protein S21 Bamb_5802 123 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 115361176 Common - indolepyruvate ferredoxin oxidoreductase Bamb_6435 94 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 115361024 Common - GtrA family protein Bamb_6283 8 COG2246 COG2246, Predicted membrane protein Function unknown 115360594 Common - type III secretion system ATPase Bamb_5851 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 115361087 Common - Succinate-semialdehyde dehydrogenase (NAD(P)(+)) Bamb_6346 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360848 Common - dihydrodipicolinate synthetase Bamb_6107 67 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 115361039 Common - type II secretion system protein E Bamb_6298 166 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 115360351 Pathogen - hypothetical protein Bamb_5607 1 COG4907 COG4907, Predicted membrane protein Function unknown 115360381 Common - hypothetical protein Bamb_5637 12 None None None 115360841 Pathogen - hypothetical protein Bamb_6100 1 None None None 115360643 Common - Rieske (2Fe-2S) domain protein Bamb_5901 79 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 115360450 Common - major facilitator superfamily MFS_1 Bamb_5706 179 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 115360588 Common - Betaine-aldehyde dehydrogenase Bamb_5845 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360828 Common - dTDP-4-dehydrorhamnose reductase Bamb_6087 167 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 115360918 Common - Capsule polysaccharide biosynthesis Bamb_6177 18 COG3562 KpsS, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 115360637 Common - transcriptional regulator, LysR family Bamb_5895 184 COG0583 LysR, Transcriptional regulator Transcription 115361032 Common - Flp pilus assembly CpaB Bamb_6291 66 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 115360852 Common - transcriptional regulator, LysR family Bamb_6111 143 COG0583 LysR, Transcriptional regulator Transcription 115360707 Common - putative oxidoreductase Bamb_5966 185 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 115360716 Pathogen - hypothetical protein Bamb_5975 1 None None None 115360950 Common - cytochrome c oxidase, subunit II Bamb_6209 144 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 115360770 Common - Tannase and feruloyl esterase Bamb_6029 20 None None None 115360448 Common - TfoX, N-terminal domain protein Bamb_5704 11 COG3070 TfoX, Regulator of competence-specific genes Transcription 115361217 Common - amino acid adenylation domain Bamb_6476 242 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115361209 Common - transcriptional regulator, LuxR family Bamb_6468 4 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 115360323 Common - Benzaldehyde dehydrogenase (NAD(+)) Bamb_5579 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115361080 Common - Cupin 2, conserved barrel domain protein Bamb_6339 36 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 115360554 Common - protein of unknown function DUF1427 Bamb_5811 12 COG4317 COG4317, Uncharacterized protein conserved in bacteria Function unknown 115360365 Common - CBS domain containing membrane protein Bamb_5621 160 COG0517 COG0517, FOG: CBS domain General function prediction only 115360459 Common - 2-keto-4-pentenoate hydratase-like protein Bamb_5715 57 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 115360923 Common - 2-dehydro-3-deoxyphosphooctonate aldolase Bamb_6182 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 115360926 Common - KpsF/GutQ family protein Bamb_6185 150 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 115360945 Common - hypothetical protein Bamb_6204 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 115360885 Pathogen - phosphopantetheine-binding Bamb_6144 1 None None None 115360954 Common - small integral membrane protein Bamb_6213 9 COG5605 COG5605, Predicted small integral membrane protein Function unknown 115360562 Common - (2Fe-2S)-binding domain protein Bamb_5819 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 115361106 Common - GCN5-related N-acetyltransferase Bamb_6365 37 COG0456 RimI, Acetyltransferases General function prediction only 115361075 Common - D-xylose ABC transporter, periplasmic substrate-binding protein Bamb_6334 105 COG4213 XylF, ABC-type xylose transport system, periplasmic component Carbohydrate transport and metabolism 115360611 Common - type II/III secretion system family protein Bamb_5868 22 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 115360676 Common - hypothetical protein Bamb_5934 46 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 115360759 Common - threonine dehydratase Bamb_6018 216 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 115361153 Common - hypothetical protein Bamb_6412 24 COG4032 COG4032, Predicted thiamine-pyrophosphate-binding protein General function prediction only 115360995 Common - Electron transfer flavoprotein alpha subunit-like protein Bamb_6254 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 115360769 Common - major facilitator superfamily MFS_1 Bamb_6028 196 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360485 Common - response regulator receiver protein Bamb_5741 81 COG4566 TtrR, Response regulator Signal transduction mechanisms 115360639 Common - outer membrane protein (porin)-like protein Bamb_5897 17 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115360531 Common - NmrA family protein Bamb_5787 30 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 115360871 Common - hypothetical protein Bamb_6130 2 None None None 115360514 Common - 3-hydroxybutyryl-CoA dehydrogenase Bamb_5770 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 115360874 Common - Taurine catabolism dioxygenase TauD/TfdA Bamb_6133 22 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 115360962 Common - crotonyl-CoA reductase Bamb_6221 185 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 115360857 Common - Levansucrase Bamb_6116 16 None None None 115360904 Common - Prolyl aminopeptidase Bamb_6163 100 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115360930 Common - UTP-glucose-1-phosphate uridylyltransferase Bamb_6189 232 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 115360347 Common - hypothetical protein Bamb_5603 2 None None None 115361254 Common - flavin reductase domain protein, FMN-binding Bamb_6513 106 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 115361179 Common - glutathione-disulfide reductase Bamb_6438 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 115360501 Common - FAD dependent oxidoreductase Bamb_5757 94 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 115360563 Common - putative aldehyde dehydrogenase Bamb_5820 102 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 115360937 Common - inner membrane ABC transporter permease protein YjfF Bamb_6196 109 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 115361232 Common - Undecaprenyl-phosphate galactose phosphotransferase Bamb_6491 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 115360646 Common - dihydroorotate dehydrogenase family protein Bamb_5904 193 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 115361067 Common - binding-protein-dependent transport systems inner membrane component Bamb_6326 137 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 115361136 Common - hypothetical protein Bamb_6395 2 None None None 115360747 Common - flavodoxin/nitric oxide synthase Bamb_6006 27 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 115360537 Common - OsmC family protein Bamb_5793 82 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 115360658 Common - L-carnitine dehydratase/bile acid-inducible protein F Bamb_5916 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 115361308 Common - hypothetical protein Bamb_6567 5 None None None 115360661 Common - beta-ketoacyl synthase Bamb_5919 210 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 115360917 Common - hypothetical protein Bamb_6176 8 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 115360955 Common - High potential iron-sulfur protein Bamb_6214 6 None None None 115360579 Common - phenylalanine/histidine ammonia-lyase Bamb_5836 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 115361012 Common - hypothetical protein Bamb_6271 32 COG3777 COG3777, Uncharacterized conserved protein Function unknown 115360983 Common - condensation domain protein Bamb_6242 8 None None None 115360403 Common - protein of unknown function DUF326 Bamb_5659 16 None None None 115360340 Common - malto-oligosyltrehalose synthase Bamb_5596 88 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 115360626 Common - Lytic transglycosylase, catalytic Bamb_5883 34 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 115361171 Pathogen - hypothetical protein Bamb_6430 1 None None None 115360572 Common - transcriptional regulator, LysR family Bamb_5829 130 COG0583 LysR, Transcriptional regulator Transcription 115360391 Common - glycosyl transferase, group 1 Bamb_5647 29 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 115360624 Common - hypothetical protein Bamb_5881 2 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 115360319 Common - extracellular solute-binding protein, family 3 Bamb_5575 158 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115361238 Pathogen - hypothetical protein Bamb_6497 1 None None None 115360447 Common - hypothetical protein Bamb_5703 6 None None None 115361040 Common - type II secretion system protein Bamb_6299 83 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 115361265 Common - major facilitator superfamily MFS_1 Bamb_6524 170 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361327 Common - Muconolactone delta-isomerase Bamb_6586 24 COG4829 CatC1, Muconolactone delta-isomerase Secondary metabolites biosynthesis, transport, and catabolism 115360507 Common - AMP-dependent synthetase and ligase Bamb_5763 220 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 115361107 Common - putative transmembrane protein Bamb_6366 22 None None None 115360756 Common - Fusaric acid resistance protein conserved region Bamb_6015 47 COG1289 COG1289, Predicted membrane protein Function unknown 115361052 Common - Alcohol dehydrogenase GroES domain protein Bamb_6311 196 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 115360584 Common - pseudoazurin Bamb_5841 29 COG3794 PetE, Plastocyanin Energy production and conversion 115361186 Common - anti-ECFsigma factor, ChrR Bamb_6445 33 COG3806 ChrR, Transcriptional activator Transcription 115361148 Common - hypothetical protein Bamb_6407 29 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 115360453 Common - nitrate reductase molybdenum cofactor assembly chaperone Bamb_5709 55 COG2180 NarJ, Nitrate reductase delta subunit Energy production and conversion 115360875 Common - Methyltransferase type 11 Bamb_6134 142 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 115360895 Common - alpha/beta hydrolase fold Bamb_6154 120 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 115360608 Pathogen - putative type III secretion protein Bamb_5865 1 None None None 115360951 Common - Cytochrome-c oxidase Bamb_6210 172 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 115360971 Common - hypothetical protein Bamb_6230 5 None None None 115360802 Common - hypothetical protein Bamb_6061 5 None None None 115360837 Common - Betaine-aldehyde dehydrogenase Bamb_6096 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360532 Common - transcriptional regulator, GntR family Bamb_5788 177 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 115360598 Pathogen - hrpB2; type III secretion protein HrpB2 Bamb_5855 2 None None None 115361192 Common - peptidase S15 Bamb_6451 86 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 115360481 Common - major facilitator superfamily MFS_1 Bamb_5737 10 None None None 115360804 Common - porin, Gram-negative type Bamb_6063 29 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115361218 Common - short-chain dehydrogenase/reductase SDR Bamb_6477 94 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 115361141 Pathogen - hypothetical protein Bamb_6400 1 None None None 115360401 Pathogen - hypothetical protein Bamb_5657 1 None None None 115360897 Pathogen - hypothetical protein Bamb_6156 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 115360517 Common - acyl-CoA dehydrogenase domain protein Bamb_5773 155 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 115361222 Common - NAD-dependent epimerase/dehydratase Bamb_6481 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 115360758 Common - transcriptional regulator, GntR family Bamb_6017 162 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 115360530 Common - transcriptional regulator, LysR family Bamb_5786 167 COG0583 LysR, Transcriptional regulator Transcription 115360671 Common - hypothetical protein Bamb_5929 5 None None None 115361197 Common - transcriptional regulator, LysR family Bamb_6456 158 COG0583 LysR, Transcriptional regulator Transcription 115361151 Common - branched-chain amino acid aminotransferase Bamb_6410 193 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 115360497 Common - GCN5-related N-acetyltransferase Bamb_5753 2 COG3393 COG3393, Predicted acetyltransferase General function prediction only 115361046 Common - protein involved in MetA-pathway of phenol degradation-like protein Bamb_6305 17 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 115360873 Common - ABC transporter related Bamb_6132 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 115361159 Common - transcriptional regulator, LysR family Bamb_6418 146 COG0583 LysR, Transcriptional regulator Transcription 115360942 Common - YadA C-terminal domain protein Bamb_6201 35 COG5099 COG5099, RNA-binding protein of the Puf family, translational repressor Translation, ribosomal structure and biogenesis 115361245 Common - transcriptional regulator, AsnC family Bamb_6504 150 COG1522 Lrp, Transcriptional regulators Transcription 115361108 Common - TonB-dependent siderophore receptor Bamb_6367 107 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 115360957 Common - sodium:dicarboxylate symporter Bamb_6216 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 115360419 Common - flavin-containing monooxygenase FMO Bamb_5675 65 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 115360368 Common - extracellular solute-binding protein, family 1 Bamb_5624 26 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 115360396 Common - histidinol-phosphate phosphatase family protein Bamb_5652 124 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 115360346 Common - phosphatidylserine decarboxylase-related Bamb_5602 32 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 115360512 Common - AMP-dependent synthetase and ligase Bamb_5768 205 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115361299 Common - RND efflux system, outer membrane lipoprotein, NodT family Bamb_6558 104 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 115361125 Common - alkylhydroperoxidase like protein, AhpD family Bamb_6384 84 COG2128 COG2128, Uncharacterized conserved protein Function unknown 115360488 Pathogen - hypothetical protein Bamb_5744 1 None None None 115361207 Common - transcriptional regulator, LuxR family Bamb_6466 2 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 115360775 Common - FMN reductase Bamb_6034 54 COG0431 COG0431, Predicted flavoprotein General function prediction only 115360471 Common - Aldose 1-epimerase Bamb_5727 90 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 115360408 Common - phosphate-starvation-inducible E Bamb_5664 13 COG3223 COG3223, Predicted membrane protein Function unknown 115360928 Pathogen - hypothetical protein Bamb_6187 1 None None None 115360635 Pathogen - hypothetical protein Bamb_5892 1 None None None 115361288 Common - amidase Bamb_6547 219 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 115360819 Common - Pirin domain protein domain protein Bamb_6078 148 COG1741 COG1741, Pirin-related protein General function prediction only 115361212 Common - glycosyl transferase, family 25 Bamb_6471 2 COG3306 COG3306, Glycosyltransferase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 115360523 Common - NAD(P) transhydrogenase, beta subunit Bamb_5779 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 115361114 Common - ABC transporter related Bamb_6373 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 115360860 Common - transcriptional regulator, MerR family Bamb_6119 126 COG0789 SoxR, Predicted transcriptional regulators Transcription 115360702 Common - methionine sulfoxide reductase A Bamb_5961 204 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 115360417 Common - protein of unknown function DUF1028 Bamb_5673 38 COG3342 COG3342, Uncharacterized conserved protein Function unknown 115361118 Common - short-chain dehydrogenase/reductase SDR Bamb_6377 232 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 115360919 Common - transferase, hexapeptide repeat Bamb_6178 208 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 115360650 Common - porin, Gram-negative type Bamb_5908 24 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 115360715 Common - hypothetical protein Bamb_5974 8 None None None 115360997 Common - transcriptional regulator, LysR family Bamb_6256 126 COG0583 LysR, Transcriptional regulator Transcription 115360380 Common - hypothetical protein Bamb_5636 6 None None None 115360714 Pathogen - hypothetical protein Bamb_5973 1 None None None 115361129 Common - heat shock protein Hsp20 Bamb_6388 136 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 115360436 Common - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase Bamb_5692 218 COG1049 AcnB, Aconitase B Energy production and conversion 115360558 Pathogen - hypothetical protein Bamb_5815 1 None None None 115360814 Common - Betaine-aldehyde dehydrogenase Bamb_6073 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360387 Common - hypothetical protein Bamb_5643 5 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 115361027 Common - hypothetical protein Bamb_6286 9 None None None 115361077 Common - inner-membrane translocator Bamb_6336 121 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 115360618 Common - putative type IV pilus biogenesis protein Bamb_5875 2 None None None 115360821 Common - hypothetical protein Bamb_6080 5 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 115360798 Common - Extracellular ligand-binding receptor Bamb_6057 142 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 115360422 Common - Sel1 domain protein repeat-containing protein Bamb_5678 69 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 115360947 Common - HMG-I and HMG-Y, DNA-binding domain protein Bamb_6206 24 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 115360965 Common - 3-oxoacyl-(acyl-carrier-protein) synthase III Bamb_6224 226 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 115360376 Common - natural resistance-associated macrophage protein Bamb_5632 30 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 115361168 Common - sodium:dicarboxylate symporter Bamb_6427 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 115360463 Pathogen - hypothetical protein Bamb_5719 2 None None None 115361082 Common - transcriptional regulator, LysR family Bamb_6341 154 COG0583 LysR, Transcriptional regulator Transcription 115360428 Common - cytochrome d ubiquinol oxidase, subunit II Bamb_5684 151 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 115360593 Pathogen - putative type III secretory pathway protein Bamb_5850 1 None None None 115360939 Common - two component transcriptional regulator, AraC family Bamb_6198 226 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115361313 Common - Cytochrome c, monohaem Bamb_6572 159 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 115360353 Common - sodium/hydrogen exchanger Bamb_5609 32 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 115361070 Common - Arabinogalactan endo-1,4-beta-galactosidase Bamb_6329 21 COG3867 COG3867, Arabinogalactan endo-1,4-beta-galactosidase Carbohydrate transport and metabolism 115360727 Common - RND efflux system, outer membrane lipoprotein, NodT family Bamb_5986 106 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 115360746 Common - transcriptional regulator, TetR family Bamb_6005 86 COG1309 AcrR, Transcriptional regulator Transcription 115360932 Common - histone family protein nucleoid-structuring protein H-NS Bamb_6191 15 COG2916 Hns, DNA-binding protein H-NS General function prediction only 115361050 Common - Carboxymethylenebutenolidase Bamb_6309 107 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 115360570 Common - transcriptional regulator, AraC family Bamb_5827 126 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 115361010 Common - L-carnitine dehydratase/bile acid-inducible protein F Bamb_6269 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 115361134 Common - chaperonin Cpn10 Bamb_6393 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 115360547 Pathogen - hypothetical protein Bamb_5804 1 None None None 115360935 Common - ABC transporter related Bamb_6194 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 115361019 Common - poly(3-hydroxybutyrate) depolymerase-like protein Bamb_6278 29 COG3509 LpqC, Poly(3-hydroxybutyrate) depolymerase Secondary metabolites biosynthesis, transport, and catabolism 115360556 Common - transcriptional regulator, winged helix family Bamb_5813 127 COG3903 COG3903, Predicted ATPase General function prediction only 115360577 Common - adenylate/guanylate cyclase Bamb_5834 110 COG3899 COG3899, Predicted ATPase General function prediction only 115360986 Common - YadA C-terminal domain protein Bamb_6245 27 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 115360648 Common - major facilitator superfamily MFS_1 Bamb_5906 119 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360342 Common - NADPH-dependent FMN reductase Bamb_5598 74 COG0431 COG0431, Predicted flavoprotein General function prediction only 115360349 Common - intracellular protease, PfpI family Bamb_5605 161 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 115360596 Pathogen - hypothetical protein Bamb_5853 1 None None None 115360978 Common - diguanylate phosphodiesterase Bamb_6237 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 115361269 Common - 2-dehydropantoate 2-reductase Bamb_6528 110 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 115361054 Common - major facilitator superfamily MFS_1 Bamb_6313 61 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360622 Common - pilO; putative type IV pilus biosynthesis protein Bamb_5879 6 None None None 115360415 Common - transcriptional regulator, LysR family Bamb_5671 191 COG0583 LysR, Transcriptional regulator Transcription 115360912 Pathogen - hypothetical protein Bamb_6171 1 None None None 115361225 Common - ATP-grasp enzyme-like protein Bamb_6484 21 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 115361161 Common - major facilitator superfamily MFS_1 Bamb_6420 127 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 115360999 Common - transcriptional regulator, AraC family Bamb_6258 114 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 115360846 Common - transcriptional regulator, TetR family Bamb_6105 74 COG1309 AcrR, Transcriptional regulator Transcription 115361133 Common groEL chaperonin GroEL Bamb_6392 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 115361177 Common - transcriptional regulator, AsnC family Bamb_6436 143 COG1522 Lrp, Transcriptional regulators Transcription 115360967 Common - pyruvate phosphate dikinase Bamb_6226 139 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 115360749 Common - ProQ activator of osmoprotectant transporter ProP Bamb_6008 5 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 115361252 Common - Enoyl-CoA hydratase/isomerase Bamb_6511 171 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 115360434 Common - thiamineS protein Bamb_5690 17 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 115360478 Pathogen - hypothetical protein Bamb_5734 1 None None None 115360582 Common - polar amino acid ABC transporter, inner membrane subunit Bamb_5839 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 115361061 Common - extracellular solute-binding protein, family 3 Bamb_6320 169 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115360606 Pathogen - hypothetical protein Bamb_5863 1 None None None 115361194 Common - OsmC family protein Bamb_6453 43 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 115360535 Common - drug resistance transporter, EmrB/QacA subfamily Bamb_5791 203 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115360890 Common - ABC transporter related Bamb_6149 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 115361199 Common - polar amino acid ABC transporter, inner membrane subunit Bamb_6458 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 115361059 Common - transcriptional regulator, LysR family Bamb_6318 177 COG0583 LysR, Transcriptional regulator Transcription 115361306 Common - glucose-methanol-choline oxidoreductase Bamb_6565 92 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 115360335 Common - trehalose synthase Bamb_5591 166 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 115360735 Common - Carboxymethylenebutenolidase Bamb_5994 117 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 115361287 Common - putative phenylacetaldoxime dehydratase Bamb_6546 8 None None None 115361143 Common - transcriptional regulator, HxlR family Bamb_6402 142 COG1733 COG1733, Predicted transcriptional regulators Transcription 115360765 Common - hypothetical protein Bamb_6024 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 115360782 Common - Lysine exporter protein (LYSE/YGGA) Bamb_6041 37 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 115360505 Common - binding-protein-dependent transport systems inner membrane component Bamb_5761 180 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 115360591 Pathogen - hypothetical protein Bamb_5848 1 None None None 115360445 Common - hypothetical protein Bamb_5701 2 None None None 115361211 Pathogen - hypothetical protein Bamb_6470 1 None None None 115361251 Common - luciferase family protein Bamb_6510 100 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 115361099 Common - FAD dependent oxidoreductase Bamb_6358 140 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 115360964 Common - phosphopantetheine-binding Bamb_6223 5 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 115361283 Common - cobalamin synthesis protein, P47K Bamb_6542 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 115360355 Common - Ku domain protein Bamb_5611 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 115361184 Common - OsmC family protein Bamb_6443 55 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 115361004 Common - aldo/keto reductase Bamb_6263 205 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 115361236 Common - transcriptional regulator, Crp/Fnr family Bamb_6495 28 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 115360510 Common - 3-oxoacyl-(acyl carrier protein) synthase III Bamb_5766 220 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 115361262 Common - hypothetical protein Bamb_6521 4 None None None 115361329 Common - hypothetical protein Bamb_6588 54 COG0456 RimI, Acetyltransferases General function prediction only 115361033 Common - type II and III secretion system protein Bamb_6292 142 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 115361085 Common - autotransporter-associated beta strand repeat protein Bamb_6344 29 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 115360789 Common - phosphopantetheine-binding Bamb_6048 13 None None None 115360902 Common - cytochrome c, class I Bamb_6161 6 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115360949 Common - hypothetical protein Bamb_6208 7 None None None 115360616 Common - type IV prepilin Bamb_5873 8 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 115360893 Common - hypothetical protein Bamb_6152 10 None None None 115361323 Common - oxidoreductase FAD/NAD(P)-binding domain protein Bamb_6582 186 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 115360386 Common - multi-sensor hybrid histidine kinase Bamb_5642 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 115360839 Common - hypothetical protein Bamb_6098 27 COG3391 COG3391, Uncharacterized conserved protein Function unknown 115360432 Common - molybdenum cofactor biosynthesis protein A Bamb_5688 195 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 115360614 Common - type III secretion outer membrane pore, YscC/HrcC family Bamb_5871 123 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 115360729 Common - two component heavy metal response transcriptional regulator, winged helix family Bamb_5988 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 115360328 Pathogen - hypothetical protein Bamb_5584 1 None None None 115360668 Common - Thioesterase Bamb_5926 47 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 115360700 Common - methionine-R-sulfoxide reductase Bamb_5959 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 115360922 Common - transposase, IS605 OrfB family Bamb_6181 72 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 115360929 Common - phosphoesterase, PA-phosphatase related Bamb_6188 9 None None None 115360889 Common - protein of unknown function DUF214 Bamb_6148 43 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 115360499 Common - transcriptional regulator, LysR family Bamb_5755 186 COG0583 LysR, Transcriptional regulator Transcription 115361205 Common - outer membrane autotransporter barrel domain Bamb_6464 45 COG4625 COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain Function unknown 115360560 Pathogen - hypothetical protein Bamb_5817 1 None None None 115360500 Common - Betaine-aldehyde dehydrogenase Bamb_5756 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 115360673 Common - hypothetical protein Bamb_5931 2 None None None 115360495 Common - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding Bamb_5751 123 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 115360350 Pathogen - hypothetical protein Bamb_5606 1 None None None 115360694 Pathogen - hypothetical protein Bamb_5952 1 None None None 115361048 Common - hypothetical protein Bamb_6307 19 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 115361157 Common - hypothetical protein Bamb_6416 47 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 115361231 Common - glycosyl transferase, group 1 Bamb_6490 85 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 115361094 Pathogen - hypothetical protein Bamb_6353 1 None None None 115360940 Pathogen - hypothetical protein Bamb_6199 1 None None None 115360565 Common - major facilitator superfamily MFS_1 Bamb_5822 72 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 115361006 Pathogen - hypothetical protein Bamb_6265 1 None None None 115360944 Pathogen - hypothetical protein Bamb_6203 1 None None None 115360899 Common - acetyl-CoA synthetase Bamb_6158 214 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 115360390 Common - sigma54 specific transcriptional regulator, Fis family Bamb_5646 172 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 115361270 Common - Glyoxalase/bleomycin resistance protein/dioxygenase Bamb_6529 4 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 115360544 Common - hypothetical protein Bamb_5800 2 None None None 115360443 Common - organic radical activating enzyme family protein Bamb_5699 62 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 115361025 Common - glycosyl transferase, family 2 Bamb_6284 195 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 115361139 Pathogen - hypothetical protein Bamb_6398 1 None None None 115360455 Common - nitrate reductase, alpha subunit Bamb_5711 111 COG5013 NarG, Nitrate reductase alpha subunit Energy production and conversion 115360990 Common - extracellular solute-binding protein, family 3 Bamb_6249 139 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 115360424 Common - tryptophanyl-tRNA synthetase II Bamb_5680 235 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 115360796 Pathogen - hypothetical protein Bamb_6055 1 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 115361301 Common - secretion protein HlyD family protein Bamb_6560 120 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 115360378 Common - hypothetical protein Bamb_5634 29 COG3652 COG3652, Predicted outer membrane protein Function unknown 115360465 Common - hypothetical protein Bamb_5721 6 None None None 115361315 Pathogen - hypothetical protein Bamb_6574 1 None None None 115360740 Pathogen - hypothetical protein Bamb_5999 1 None None None 115361036 Common - TadE family protein Bamb_6295 10 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 115360441 Common - hypothetical protein Bamb_5697 6 None None None 115360817 Pathogen - hypothetical protein Bamb_6076 1 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 115360549 Common - protein of unknown function DUF1275 Bamb_5806 17 COG3619 COG3619, Predicted membrane protein Function unknown 115361101 Common - protein of unknown function DUF861, cupin_3 Bamb_6360 9 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 115360844 Common ampC beta-lactamase Bamb_6103 126 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 115360826 Common - hypothetical protein Bamb_6085 8 None None None 115360405 Common - FAD-dependent pyridine nucleotide-disulphide oxidoreductase Bamb_5661 213 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 115360859 Common - short-chain dehydrogenase/reductase SDR Bamb_6118 236 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 115360656 Common - Alcohol dehydrogenase, zinc-binding domain protein Bamb_5914 144 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 115360812 Common - protein of unknown function DUF861, cupin_3 Bamb_6071 31 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 115361127 Common - transcriptional regulator, GntR family Bamb_6386 193 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 115361111 Common - type I secretion outer membrane protein, TolC family Bamb_6370 139 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 115360720 Common - metallophosphoesterase Bamb_5979 75 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 115360685 Common - transcriptional regulator, LysR family Bamb_5943 180 COG0583 LysR, Transcriptional regulator Transcription 115360862 Common - hypothetical protein Bamb_6121 5 COG1107 COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain DNA replication, recombination, and repair 115360712 Common - AMP-dependent synthetase and ligase Bamb_5971 221 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 115360774 Common - sigma54 specific transcriptional regulator, Fis family Bamb_6033 170 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 115361057 Common - transcriptional regulator, GntR family Bamb_6316 204 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism