Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome NC_008054 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 104774255 Common oppA1 Oligopeptide ABC transporter, substrate binding protein Ldb1382 153 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 104773420 Common - Putative amidase Ldb0224 67 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 104774627 Common glf1 EpsIIE, UDP-galactopyranose mutase Ldb1949 66 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 104774707 Common apbE Thiamine biosynthesis protein ApbE Ldb2058 124 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 104773555 Common rpsN 30S ribosomal protein S14 Ldb0409 206 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 104773638 Common udk2 Uridine kinase Ldb0515 86 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 104774405 Common - hypothetical protein Ldb1599 223 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 104773727 Common - hypothetical protein Ldb0622 96 COG0391 COG0391, Uncharacterized conserved protein Function unknown 104773358 Common - Permease Ldb0152 182 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104773398 Common - PTS system, enzyme IIA component Ldb0199 13 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 104773513 Common acpS Holo-[acyl-carrier protein] synthase Ldb0359 135 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 104773809 Common thiI Thiamine biosynthesis protein ThiI Ldb0725 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 104773964 Nonpathogen - hypothetical protein Ldb0916 1 None None None 104773717 Nonpathogen mp1 Hypothetical membrane protein Ldb0609 1 COG4858 COG4858, Uncharacterized membrane-bound protein conserved in bacteria Function unknown 104774215 Common - hypothetical protein Ldb1336 150 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 104773772 Nonpathogen - hypothetical protein Ldb0684 1 None None None 104773498 Common - hypothetical protein Ldb0344 21 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 104773661 Common - ATP-dependent helicase (DEAD/DEAH box family) Ldb0541 232 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 104773299 Nonpathogen - Putative RNA polymerase sigma factor Ldb0066 2 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 104773347 Common - hypothetical protein Ldb0137 6 COG4863 COG4863, Uncharacterized protein conserved in bacteria Function unknown 104774380 Nonpathogen - hypothetical protein Ldb1548 1 None None None 104774724 Common pepN Aminopeptidase N Ldb2080 165 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 104774464 Common secE preprotein translocase subunit SecE Ldb1668 4 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 104773981 Common - hypothetical protein Ldb0968 3 COG3858 COG3858, Predicted glycosyl hydrolase General function prediction only 104773626 Common ppc phosphoenolpyruvate carboxylase Ldb0501 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 104773898 Common dnaE DNA polymerase III, alpha subunit (DnaE) Ldb0837 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 104773747 Common - hypothetical protein Ldb0651 67 COG1624 COG1624, Uncharacterized conserved protein Function unknown 104773720 Common gpsA1 Glycerol-3-phosphate dehydrogenase Ldb0612 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 104773971 Nonpathogen - Hypothetical membrane protein Ldb0952 1 None None None 104773617 Common brnQ Branched-chain amino acid transport system carrier protein Ldb0483 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 104773509 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Ldb0355 209 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 104774311 Nonpathogen - hypothetical protein Ldb1451 1 None None None 104773301 Common - Glycosyl transferase Ldb0071 212 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 104773635 Common - hypothetical protein Ldb0512 75 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 104774116 Common lacZ Beta-galactosidase Ldb1201 71 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 104774672 Common - hypothetical protein Ldb2020 129 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 104773389 Common - Transcriptional regulator (Crp family) Ldb0183 132 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 104773365 Common - Putative transcriptional regulator Ldb0159 3 None None None 104773370 Nonpathogen - hypothetical protein Ldb0164 2 COG1403 McrA, Restriction endonuclease Defense mechanisms 104773264 Common rpsF 30S ribosomal protein S6 Ldb0007 204 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 104774185 Common - Amino acid ABC transporter, ATP-binding protein Ldb1298 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 104774635 Common gpsA2 Glycerol-3-phosphate dehydrogenase Ldb1959 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 104773485 Nonpathogen - Hypothetical membrane protein Ldb0328 1 None None None 104774279 Common fmt Methionyl-tRNA formyltransferase Ldb1412 215 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 104773577 Nonpathogen - hypothetical protein Ldb0431 1 None None None 104774760 Common dltA D-alanine--D-alanyl carrier protein ligase Ldb2148 209 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 104773388 Nonpathogen - hypothetical protein Ldb0182 1 None None None 104774172 Nonpathogen - hypothetical protein Ldb1285 2 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 104773742 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase Ldb0646 209 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 104773938 Common prmA Ribosomal protein L11 methyltransferase Ldb0884 186 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 104773693 Common - hypothetical protein Ldb0583 9 COG4116 COG4116, Uncharacterized protein conserved in bacteria Function unknown 104774805 Nonpathogen - hypothetical protein Ldb2204 1 None None None 104774222 Common pyrH Uridylate kinase Ldb1343 244 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 104774114 Common asnA asparagine synthetase AsnA Ldb1194 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 104774800 Common - Glutamine ABC transporter, substrate binding / permease protein Ldb2198 181 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104773653 Common - Purine nucleosidase Ldb0532 85 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 104774579 Common - Putative acetyltransferase Ldb1883 32 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 104774779 Nonpathogen - hypothetical protein Ldb2171 1 None None None 104773991 Common - Hydrolase (HAD superfamily) Ldb0983 124 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 104773592 Common - Glycosyltransferase Ldb0454 10 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 104773460 Common pbuX Xanthine permease Ldb0295 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 104773588 Common tarB Putative CDP-glycerol:glycerophosphate glycerophosphotransferase Ldb0450 28 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 104774541 Common dpp Putative dipeptidyl-peptidase Ldb1795 115 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 104774777 Nonpathogen - hypothetical protein Ldb2169 2 None None None 104774348 Common infC Translation initiation factor IF-3 Ldb1502 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 104773706 Common - Putative dehydrogenase Ldb0596 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 104774717 Common - Putative transcriptional regulator (DeoR family) Ldb2068 11 COG2378 COG2378, Predicted transcriptional regulator Transcription 104774732 Nonpathogen - hypothetical protein Ldb2090 1 None None None 104773623 Common - hypothetical protein Ldb0492 16 COG3759 COG3759, Predicted membrane protein Function unknown 104774692 Common fruK 1-phosphofructokinase Ldb2041 102 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 104773883 Common - D-isomer specific 2-hydroxyacid dehydrogenase Ldb0813 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 104773294 Nonpathogen - hypothetical protein Ldb0061 1 None None None 104773320 Common - hypothetical protein Ldb0097 2 None None None 104774679 Nonpathogen - hypothetical protein Ldb2027 1 None None None 104774006 Common nth Endonuclease III Ldb1006 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 104773573 Common truA tRNA pseudouridine synthase A Ldb0427 235 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 104773945 Nonpathogen - hypothetical protein Ldb0892 1 None None None 104774281 Common rpoZ DNA-directed RNA polymerase, omega chain Ldb1414 20 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 104774548 Common - Transposase Ldb1803 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104774485 Common pepZ X-Pro dipeptidase PepZ Ldb1700 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 104774303 Common purQ Phosphoribosylformylglycinamidine synthase I Ldb1441 232 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 104773750 Common - Putative transcriptional regulator (MarR family) Ldb0658 16 COG3682 COG3682, Predicted transcriptional regulator Transcription 104773539 Common rpsG 30S ribosomal protein S7 Ldb0393 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 104773817 Nonpathogen - hypothetical protein Ldb0733 1 None None None 104774740 Nonpathogen - hypothetical protein Ldb2101 3 None None None 104773958 Common accA Acetyl-CoA carboxylase, alpha subunit Ldb0909 179 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 104773735 Common tpiA triosephosphate isomerase Ldb0637 218 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 104773353 Nonpathogen - Hypothetical membrane protein Ldb0143 1 None None None 104774373 Common - hypothetical protein Ldb1540 111 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 104774648 Common - Transcriptional regulator (LysR family) Ldb1984 84 COG0583 LysR, Transcriptional regulator Transcription 104774412 Common - hypothetical protein Ldb1606 24 COG4472 COG4472, Uncharacterized protein conserved in bacteria Function unknown 104774534 Common - Transposase Ldb1782 64 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 104773825 Common murG N-acetylglucosaminyl transferase Ldb0741 210 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 104773679 Nonpathogen - hypothetical protein Ldb0563 1 None None None 104773468 Common - Transcriptional regulator (AraC family) Ldb0303 29 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 104774772 Common - Putative lipoprotein Ldb2162 93 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 104773853 Common comEA Competence protein ComEA Ldb0769 117 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 104773755 Nonpathogen - Hypothetical membrane protein Ldb0663 1 None None None 104774523 Common thrB Homoserine kinase Ldb1760 118 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 104773274 Common - hypothetical protein Ldb0017 117 COG1285 SapB, Uncharacterized membrane protein Function unknown 104773327 Common - Substrate binding protein Ldb0104 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 104774739 Common - Putative glutamine amidotransferase Ldb2100 59 COG3442 COG3442, Predicted glutamine amidotransferase General function prediction only 104774440 Common - hypothetical protein Ldb1634 49 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 104774509 Common - Putative fructose-2,6-bisphosphatase Ldb1737 108 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 104774640 Common rmlD dTDP-4-dehydrorhamnose reductase Ldb1974 182 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 104773862 Common clpX ATP-dependent protease ATP-binding subunit Ldb0778 219 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 104773565 Common rpmJ 50S ribosomal protein L36 Ldb0419 135 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 104774043 Nonpathogen - hypothetical protein Ldb1076 1 None None None 104774394 Common - hypothetical protein Ldb1587 155 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 104773902 Common xerD Site-specific recombinase Ldb0843 232 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104773878 Common - Transcriptional regulator (LysR family) Ldb0808 192 COG0583 LysR, Transcriptional regulator Transcription 104773541 Common rpsJ 30S ribosomal protein S10 Ldb0395 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 104773874 Common - Transposase Ldb0803 85 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104774094 Nonpathogen - Hypothetical membrane protein Ldb1169 1 None None None 104774617 Common - Transposase Ldb1934 89 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773454 Common - Small heat shock protein Ldb0289 140 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 104774654 Nonpathogen - hypothetical protein Ldb1990 1 None None None 104774419 Common ruvB Holliday junction DNA helicase B Ldb1613 231 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 104774196 Common lepA GTP-binding protein LepA Ldb1311 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 104773614 Common copZ Putative metal binding protein (probable copper chaperone CopZ) Ldb0480 20 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 104774410 Common - hypothetical protein Ldb1604 14 COG3906 COG3906, Uncharacterized protein conserved in bacteria Function unknown 104773766 Common - hypothetical protein Ldb0676 5 COG5652 COG5652, Predicted integral membrane protein Function unknown 104774580 Common - hypothetical protein Ldb1884 11 COG0398 COG0398, Uncharacterized conserved protein Function unknown 104774494 Common - Amino acid permease Ldb1712 78 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 104774688 Common - ABC transporter, permease protein Ldb2037 168 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 104773996 Common fni isopentenyl pyrophosphate isomerase Ldb0996 80 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 104773646 Common ppk polyphosphate kinase Ldb0523 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 104774445 Nonpathogen - hypothetical protein Ldb1639 2 None None None 104774699 Common - hypothetical protein Ldb2050 7 COG4858 COG4858, Uncharacterized membrane-bound protein conserved in bacteria Function unknown 104774734 Common - hypothetical protein Ldb2092 115 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 104774590 Common - Putative cation transporter Ldb1895 32 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 104774367 Nonpathogen - hypothetical protein Ldb1529 1 None None None 104774010 Common pbp1A Penicillin-binding protein 1A Ldb1012 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 104774476 Nonpathogen - Putative ABC transporter, permease protein Ldb1686 1 None None None 104773892 Common - hypothetical protein Ldb0824 98 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 104773530 Common - hypothetical protein Ldb0378 2 None None None 104774228 Common ask aspartate kinase Ldb1349 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 104773548 Common rpsC 30S ribosomal protein S3 Ldb0402 244 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 104773955 Common fabZ1 Hydroxymyristoyl-[acyl carrier protein] dehydratase Ldb0906 188 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 104774436 Common - hypothetical protein Ldb1630 20 COG3870 COG3870, Uncharacterized protein conserved in bacteria Function unknown 104774424 Common groES co-chaperonin GroES Ldb1618 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 104773799 Common - hypothetical protein Ldb0715 179 COG0759 COG0759, Uncharacterized conserved protein Function unknown 104773569 Common rplQ 50S ribosomal protein L17 Ldb0423 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 104773923 Common - hypothetical protein Ldb0869 6 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 104774298 Common purH Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase Ldb1436 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 104773479 Common pncA Nicotinamidase Ldb0322 107 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 104773681 Common - hypothetical protein Ldb0565 212 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 104774074 Common - Putative transcriptional regulator of multidrug efflux pump gene (MerR family) Ldb1132 57 COG0789 SoxR, Predicted transcriptional regulators Transcription 104773514 Common alr Alanine racemase Ldb0360 199 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 104774750 Common - Hydrolase (HAD superfamily) Ldb2121 125 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 104774238 Nonpathogen - hypothetical protein Ldb1359 1 None None None 104773814 Common radC DNA repair protein RadC Ldb0730 177 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 104773704 Common - Putative peptidase Ldb0594 46 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 104773442 Common - hypothetical protein Ldb0262 7 COG3576 COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase General function prediction only 104774244 Nonpathogen - hypothetical protein Ldb1367 1 None None None 104774547 Common - PTS system, mannose-specific enzyme IIAB component Ldb1801 79 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 104774120 Common - Transposase Ldb1206 89 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773978 Common phoU Phosphate uptake regulator Ldb0960 197 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 104774179 Common - Putative membrane-associated phosphatase Ldb1292 59 None None None 104774079 Common - D-isomer specific 2-hydroxyacid dehydrogenase Ldb1147 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 104774318 Common - Transposase Ldb1466 91 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104774514 Nonpathogen - hypothetical protein Ldb1744 1 None None None 104774513 Nonpathogen - hypothetical protein Ldb1743 1 None None None 104773379 Nonpathogen - hypothetical protein Ldb0173 1 None None None 104774457 Nonpathogen - hypothetical protein Ldb1661 1 None None None 104773888 Common - Putative hydrolase (beta-lactamase superfamily III) Ldb0820 114 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 104773429 Nonpathogen - hypothetical protein Ldb0242 1 None None None 104774107 Nonpathogen - hypothetical protein Ldb1186 1 None None None 104774187 Common - Transcriptional regulator (LysR family) Ldb1300 192 COG0583 LysR, Transcriptional regulator Transcription 104773841 Common - hypothetical protein Ldb0757 10 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 104773520 Common - Putative RNA-binding protein Ldb0366 27 COG1098 VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) Translation, ribosomal structure and biogenesis 104774080 Common - ABC transporter, ATP-binding / permease protein Ldb1149 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774791 Nonpathogen - hypothetical protein Ldb2188 1 None None None 104773826 Common ftsQ Cell division protein FtsQ Ldb0742 12 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 104774743 Common pyrC dihydroorotase Ldb2111 217 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 104774208 Common - hypothetical protein Ldb1326 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 104774157 Common hslV ATP-dependent protease peptidase subunit Ldb1270 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 104773494 Nonpathogen - hypothetical protein Ldb0340 1 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 104774796 Common - hypothetical protein Ldb2194 8 None None None 104774407 Common - hypothetical protein Ldb1601 7 None None None 104774504 Common - hypothetical protein Ldb1732 5 COG4639 COG4639, Predicted kinase General function prediction only 104773833 Common cspB Cold shock protein B Ldb0749 111 COG1278 CspC, Cold shock proteins Transcription 104774559 Common - PTS system, glucose/glucoside-specific enzyme IIA component Ldb1823 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 104774552 Nonpathogen - hypothetical protein Ldb1816 1 None None None 104774253 Common rnc Ribonuclease III Ldb1380 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 104773785 Common prfA peptide chain release factor 1 Ldb0701 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 104774575 Common - Transposase Ldb1874 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104774462 Common rplK 50S ribosomal protein L11 Ldb1666 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 104773507 Common rpoE DNA-directed RNA polymerase subunit delta Ldb0353 14 COG3343 RpoE, DNA-directed RNA polymerase, delta subunit Transcription 104773621 Nonpathogen - hypothetical protein Ldb0487 1 None None None 104774562 Common - ABC transporter, ATP-binding protein Ldb1828 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 104773395 Common - hypothetical protein Ldb0196 78 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 104773988 Nonpathogen - hypothetical protein Ldb0980 1 None None None 104774793 Common nagB Glucosamine-6-phosphate deaminase Ldb2190 93 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 104774609 Common glpQ Glycerophosphoryl diester phosphodiesterase Ldb1922 156 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 104773745 Common potC1 Spermidine/putrescine ABC transporter, permeaseprotein PotC Ldb0649 175 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 104773284 Nonpathogen - Hypothetical membrane protein Ldb0037 1 None None None 104774775 Nonpathogen - Hypothetical membrane protein Ldb2167 1 None None None 104773351 Common - hypothetical protein Ldb0141 167 COG1576 COG1576, Uncharacterized conserved protein Function unknown 104773896 Common - Transposase Ldb0835 88 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773308 Nonpathogen - hypothetical protein Ldb0078 1 None None None 104773631 Common - Permease Ldb0508 185 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104773845 Common - hypothetical protein Ldb0761 11 COG5503 COG5503, Uncharacterized conserved small protein Function unknown 104773363 Nonpathogen - hypothetical protein Ldb0157 1 None None None 104773823 Common mraY Phospho-N-acetylmuramoyl-pentapeptide- transferase Ldb0739 219 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 104773473 Common - hypothetical protein Ldb0312 51 COG2606 EbsC, Uncharacterized conserved protein Function unknown 104774146 Common - hypothetical protein Ldb1253 198 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 104774336 Nonpathogen - Putative acylphosphatase Ldb1490 1 COG1254 AcyP, Acylphosphatases Energy production and conversion 104773419 Nonpathogen - hypothetical protein Ldb0223 2 None None None 104774358 Common polA DNA polymerase I Ldb1512 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 104773835 Nonpathogen - hypothetical protein Ldb0751 1 None None None 104773891 Common - 5'-nucleotidase Ldb0823 131 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 104773486 Nonpathogen - hypothetical protein Ldb0329 1 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 104773603 Common ligA NAD-dependent DNA ligase Ldb0466 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 104773663 Common - hypothetical protein Ldb0544 14 COG3641 PfoR, Predicted membrane protein, putative toxin regulator General function prediction only 104774066 Common - ABC transporter, ATP-binding protein Ldb1119 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 104774670 Common - hypothetical protein Ldb2013 53 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 104774629 Common epsIIC EpsIIC, Putative glycosyltransferase Ldb1951 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 104774203 Nonpathogen - hypothetical protein Ldb1321 1 None None None 104774112 Nonpathogen - hypothetical protein Ldb1192 1 None None None 104774300 Common purM phosphoribosylaminoimidazole synthetase Ldb1438 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 104773500 Common - hypothetical protein Ldb0346 19 COG4466 Veg, Uncharacterized protein conserved in bacteria Function unknown 104773719 Common lgt prolipoprotein diacylglyceryl transferase Ldb0611 193 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 104773266 Common rpsR 30S ribosomal protein S18 Ldb0009 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 104773966 Nonpathogen - hypothetical protein Ldb0918 1 None None None 104774163 Common - Putative GTP-binding protein Ldb1276 151 COG1161 COG1161, Predicted GTPases General function prediction only 104773947 Common - hypothetical protein Ldb0898 12 COG4907 COG4907, Predicted membrane protein Function unknown 104773343 Common arbX Putative glycosyltransferase Ldb0132 14 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 104774260 Common acpP1 Acyl carrier protein (ACP) Ldb1387 210 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 104774321 Nonpathogen - hypothetical protein Ldb1470 1 None None None 104773297 Nonpathogen - hypothetical protein Ldb0064 1 None None None 104773349 Common - Hydrolase (Metallo-beta-lactamase family ) Ldb0139 57 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 104773649 Nonpathogen - hypothetical protein Ldb0528 1 None None None 104774469 Common - hypothetical protein Ldb1679 35 COG1939 COG1939, Uncharacterized protein conserved in bacteria Function unknown 104774248 Common rpsP 30S ribosomal protein S16 Ldb1371 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 104773725 Common dppA D-aminopeptidase Ldb0617 34 COG2362 DppA, D-aminopeptidase Amino acid transport and metabolism 104774385 Nonpathogen - hypothetical protein Ldb1560 1 None None None 104773527 Common lysS lysyl-tRNA synthetase Ldb0373 247 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 104773457 Common guaC guanosine 5'-monophosphate oxidoreductase Ldb0292 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 104774351 Common - hypothetical protein Ldb1505 2 None None None 104774011 Common recU Holliday junction-specific endonuclease Ldb1013 18 COG3331 PrfA, Penicillin-binding protein-related factor A, putative recombinase General function prediction only 104774677 Common - hypothetical protein Ldb2025 2 None None None 104773340 Common - Transcriptional regulator (LysR family) Ldb0124 187 COG0583 LysR, Transcriptional regulator Transcription 104774048 Common - Putative phosphotyrosine protein phosphatase Ldb1086 131 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 104773329 Common - ABC transporter, ATP-binding/permease protein Ldb0110 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774665 Common epsID EpsID, Hypothetical protein Ldb2008 40 COG4464 CapC, Capsular polysaccharide biosynthesis protein Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 104773676 Common - hypothetical protein Ldb0560 58 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 104774213 Common - hypothetical protein Ldb1334 33 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 104774742 Common carA1 carbamoyl phosphate synthase small subunit Ldb2110 238 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 104774521 Nonpathogen - hypothetical protein Ldb1754 1 None None None 104774452 Nonpathogen - hypothetical protein Ldb1651 6 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 104773793 Common atpA F0F1 ATP synthase subunit alpha Ldb0709 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 104774584 Common - Putative glutamine amidotransferase Ldb1888 115 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 104773334 Common - hypothetical protein Ldb0117 2 None None None 104773434 Common folP Dihydropteroate synthase Ldb0249 216 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 104774305 Common purC Phosphoribosylaminoimidazole- succinocarboxamidesynthetase Ldb1443 204 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 104774371 Common prsA peptidylprolyl isomerase Ldb1533 14 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 104774313 Common - Putative permease Ldb1456 167 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104773619 Common - Putative hydrolase (NUDIX family) Ldb0485 84 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 104773973 Nonpathogen - hypothetical protein Ldb0955 1 None None None 104773373 Nonpathogen - hypothetical protein Ldb0167 1 None None None 104773496 Common metS methionyl-tRNA synthetase Ldb0342 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773590 Common - Glycosyltransferase Ldb0452 109 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 104774343 Common - Hydrolase (HD superfamily) Ldb1497 43 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 104774533 Common - hypothetical protein Ldb1781 118 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 104773401 Common phnD Phosphonate ABC transporter, substrate binding protein Ldb0202 89 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 104773276 Common - Two-component system, response regulator Ldb0026 10 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 104774646 Nonpathogen - hypothetical protein Ldb1981 1 None None None 104773466 Common - hypothetical protein Ldb0301 6 COG4403 LcnDR2, Lantibiotic modifying enzyme Defense mechanisms 104773917 Nonpathogen - hypothetical protein Ldb0861 1 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 104774133 Common - Putative helicase Ldb1232 100 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 104774802 Common - Permease Ldb2200 135 COG2252 COG2252, Permeases General function prediction only 104774756 Nonpathogen - hypothetical protein Ldb2144 1 None None None 104773315 Common exoA Exodeoxyribonuclease III Ldb0092 194 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 104773597 Nonpathogen - hypothetical protein Ldb0459 1 None None None 104774365 Common - ABC transporter, ATP-binding protein Ldb1527 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 104773402 Common phnC Phosphonate ABC transporter, ATP binding protein Ldb0203 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 104774266 Common - Transposase Ldb1393 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 104774220 Common uppS Undecaprenyl pyrophosphate synthetase Ldb1341 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 104773480 Common - hypothetical protein Ldb0323 2 None None None 104773936 Common - hypothetical protein Ldb0882 12 COG2966 COG2966, Uncharacterized conserved protein Function unknown 104774684 Common - Putative transcriptional regulator (LytR family) Ldb2032 63 COG1316 LytR, Transcriptional regulator Transcription 104773931 Common - Two-component system, response regulator Ldb0877 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 104774528 Common - PTS system, sucrose-specific enzyme IIA component Ldb1771 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 104774136 Common - Cation transporting P-type ATPase (probable copper transporter) Ldb1239 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 104774021 Common - hypothetical protein Ldb1025 42 COG3830 COG3830, ACT domain-containing protein Signal transduction mechanisms 104774615 Nonpathogen - hypothetical protein Ldb1932 1 COG5652 COG5652, Predicted integral membrane protein Function unknown 104774543 Nonpathogen - hypothetical protein Ldb1797 1 None None None 104773708 Common pgsA CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase Ldb0598 205 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 104774690 Common - Hydrolase (HAD superfamily) Ldb2039 103 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 104774174 Nonpathogen - hypothetical protein Ldb1287 1 None None None 104773941 Nonpathogen - hypothetical protein Ldb0887 1 None None None 104773586 Nonpathogen - hypothetical protein Ldb0448 1 None None None 104774807 Nonpathogen - Hypothetical membrane protein Ldb2206 1 None None None 104774277 Common pppL Serine/threonine protein phosphatase Ldb1410 136 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 104774726 Common - Transcriptional regulator (DeoR family) Ldb2082 59 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 104774378 Nonpathogen - hypothetical protein Ldb1546 1 None None None 104774338 Common - Two-component system, sensor histidine kinase Ldb1492 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 104774053 Nonpathogen - hypothetical protein Ldb1091 1 None None None 104773812 Common folC1 Folylpolyglutamate synthase Ldb0728 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 104774478 Common - Putative hydrolase (NUDIX family) Ldb1691 169 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 104774236 Common - Putative sugar uptake protein Ldb1357 12 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 104774087 Nonpathogen - hypothetical protein Ldb1159 1 None None None 104774082 Common - hypothetical protein Ldb1151 140 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 104774434 Common - DNA replication intiation control protein YabA Ldb1628 12 COG4467 COG4467, Uncharacterized protein conserved in bacteria Function unknown 104774333 Common pheS Phenylalanyl-tRNA synthetase, alpha subunit Ldb1487 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 104773956 Common accC Acetyl-CoA carboxylase, biotin carboxylase subunit Ldb0907 233 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 104773926 Common - hypothetical protein Ldb0872 39 COG1688 COG1688, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 104773909 Common cmk Cytidylate kinase Ldb0850 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 104773880 Common argR arginine repressor Ldb0810 32 COG1438 ArgR, Arginine repressor Transcription 104774076 Common carA2b carbamoyl phosphate synthase small subunit Ldb1137 233 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 104774429 Common - Putative peptidase Ldb1623 188 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 104773567 Common rpsK 30S ribosomal protein S11 Ldb0421 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 104773986 Common - hypothetical protein Ldb0976 18 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 104774092 Common - hypothetical protein Ldb1164 9 None None None 104774633 Nonpathogen - hypothetical protein Ldb1957 1 None None None 104773683 Nonpathogen - Hypothetical membrane protein Ldb0567 1 None None None 104773921 Nonpathogen - hypothetical protein Ldb0867 1 None None None 104773953 Common fabF 3-oxoacyl-[acyl-carrier protein] synthase II Ldb0904 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 104774447 Nonpathogen - hypothetical protein Ldb1643 1 None None None 104774784 Common potD2 Spermidine/putrescine ABC transporter, substrate binding protein Ldb2181 83 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 104774586 Common - Permease Ldb1891 43 COG2409 COG2409, Predicted drug exporters of the RND superfamily General function prediction only 104773769 Common comGC Putative competence protein ComGC Ldb0681 29 COG4537 ComGC, Competence protein ComGC Intracellular trafficking and secretion 104773563 Common adk Adenylate kinase Ldb0417 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 104774454 Nonpathogen - hypothetical protein Ldb1656 1 COG0819 TenA, Putative transcription activator Transcription 104774056 Nonpathogen - hypothetical protein Ldb1100 1 None None None 104774735 Common - Putative protein tyrosine/serine phosphatase Ldb2093 49 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 104774045 Nonpathogen - hypothetical protein Ldb1083 1 None None None 104773864 Nonpathogen - hypothetical protein Ldb0782 1 None None None 104773860 Common tuf elongation factor Tu Ldb0776 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 104774396 Common - Putative sugar phosphatase (HAD superfamily) Ldb1589 96 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 104773900 Common pyk pyruvate kinase Ldb0839 232 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 104773998 Common mvaD Mevalonate diphosphate decarboxylase Ldb0998 32 COG3407 MVD1, Mevalonate pyrophosphate decarboxylase Lipid metabolism 104773553 Common rplX 50S ribosomal protein L24 Ldb0407 144 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 104774190 Common ilvE branched-chain amino acid aminotransferase Ldb1305 208 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 104774127 Common - hypothetical protein Ldb1220 21 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 104773928 Common - hypothetical protein Ldb0874 47 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 104773516 Common pth peptidyl-tRNA hydrolase Ldb0362 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 104774417 Common gpd glucose-6-phosphate 1-dehydrogenase Ldb1611 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 104773525 Common pepT2 peptidase T Ldb0371 58 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 104774596 Common - ABC transporter, ATP-binding/permease protein Ldb1906 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774686 Common pepF Oligoendopeptidase F Ldb2034 85 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 104774198 Common dnaK Chaperone protein DnaK (heat shock protein) Ldb1313 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 104773872 Common - ABC transporter, permease protein Ldb0794 101 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 104774527 Nonpathogen - hypothetical protein Ldb1767 1 None None None 104774061 Nonpathogen - hypothetical protein Ldb1108 1 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 104774258 Common oppF Oligopeptide ABC transporter, ATP-binding protein Ldb1385 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 104773674 Common galU UTP-glucose-1-phosphate uridylyltransferase Ldb0558 234 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 104774816 Common trmE tRNA modification GTPase TrmE Ldb2215 216 COG0486 ThdF, Predicted GTPase General function prediction only 104774589 Nonpathogen - hypothetical protein Ldb1894 1 None None None 104773382 Common rnhA1 Ribonuclease H1 Ldb0176 173 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 104773492 Common trpS tryptophanyl-tRNA synthetase II Ldb0338 249 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773651 Common rpe Ribulose-phosphate 3-epimerase Ldb0530 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 104773876 Nonpathogen - hypothetical protein Ldb0805 1 None None None 104773579 Common - Hydrolase (MutT/NUDIX family) Ldb0435 68 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 104774035 Common hsdS1 Type I restriction-modification system, specificity subunit Ldb1053 49 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 104774745 Common pyrR1 pyrimidine regulatory protein PyrR Ldb2113 112 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 104774251 Common ftsY Signal recognition particle-docking protein FtsY Ldb1378 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 104774798 Common dak Deoxyadenosine kinase Ldb2196 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 104774288 Common xseA Exodeoxyribonuclease VII, large subunit Ldb1424 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 104774353 Common dnaI primosomal protein DnaI Ldb1507 52 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 104773787 Common - Putative translation factor (Sua5 family) Ldb0703 239 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 104773417 Nonpathogen - hypothetical protein Ldb0221 1 None None None 104773444 Common - hypothetical protein Ldb0271 19 COG3410 COG3410, Uncharacterized conserved protein Function unknown 104773372 Nonpathogen - hypothetical protein Ldb0166 1 None None None 104773753 Common crcB1 CrcB protein Ldb0661 90 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 104773470 Common - Conserved hypothetical protein (ATP-grasp family) Ldb0307 20 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 104774398 Common - Putative 5'-nucleotidase Ldb1591 107 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 104773850 Common - Putative methylase Ldb0766 212 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 104773292 Nonpathogen - hypothetical protein Ldb0057 1 None None None 104774293 Common pepP X-Pro dipeptidase PepP Ldb1429 237 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 104774709 Common - Putative oxidoreductase Ldb2060 89 COG0431 COG0431, Predicted flavoprotein General function prediction only 104774766 Nonpathogen - hypothetical protein Ldb2155 1 None None None 104774246 Common trmD tRNA (Guanine-N1)-methyltransferase Ldb1369 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 104774751 Common - hypothetical protein Ldb2122 10 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 104773598 Common - ABC transporter, ATP-binding protein Ldb0460 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 104774503 Nonpathogen - hypothetical protein Ldb1731 1 None None None 104773740 Common - hypothetical protein Ldb0644 143 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 104773859 Nonpathogen - hypothetical protein Ldb0775 1 None None None 104774511 Common - Putative acetyltransferase Ldb1741 14 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 104773764 Common - Putative esterase (alpha-beta hydrolase superfamily) Ldb0674 67 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 104773886 Common uvrC excinuclease ABC subunit C Ldb0816 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 104774155 Common - Putative mutarotase Ldb1268 43 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 104773612 Common - Carbonate dehydratase Ldb0475 52 COG3338 Cah, Carbonic anhydrase Inorganic ion transport and metabolism 104774201 Common ribC Riboflavin kinase / FAD synthase Ldb1316 211 COG0196 RibF, FAD synthase Coenzyme metabolism 104774710 Common - Putative oxidoreductase Ldb2061 86 COG0431 COG0431, Predicted flavoprotein General function prediction only 104773608 Common - putative lipid kinase Ldb0471 111 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 104774268 Nonpathogen - hypothetical protein Ldb1395 1 None None None 104774416 Common dinB DNA polymerase IV Ldb1610 183 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 104773696 Common - Pseudouridylate synthase Ldb0586 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 104773404 Common phnE Phosphonate ABC transporter, permease protein Ldb0205 97 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 104773751 Common - hypothetical protein Ldb0659 15 COG4633 COG4633, Uncharacterized protein conserved in bacteria Function unknown 104773323 Common - Transposase Ldb0100 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 104773356 Common - ABC transporter, permease protein Ldb0150 7 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 104773641 Common glnH1 Glutamine ABC transporter, glutamine-binding protein Ldb0518 175 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 104774442 Common - Cytosine/adenosine deaminase Ldb1636 217 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 104774544 Common - hypothetical protein Ldb1798 10 COG4687 COG4687, Uncharacterized protein conserved in bacteria Function unknown 104774002 Common dinG ATP-dependent DNA helicase DinG Ldb1002 200 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 104774809 Common - ABC transporter, ATP-binding protein Ldb2208 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 104774804 Common - hypothetical protein Ldb2202 32 COG3760 COG3760, Uncharacterized conserved protein Function unknown 104774736 Common - ABC transporter, ATP-binding/permease protein Ldb2094 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774622 Common epsIIL EpsIIL, Putative polysaccharide repeat unit transport protein Ldb1939 56 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 104773670 Common - hypothetical protein Ldb0554 8 COG2246 COG2246, Predicted membrane protein Function unknown 104774495 Nonpathogen - Hypothetical membrane protein Ldb1713 2 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 104774383 Common - hypothetical protein Ldb1554 221 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 104774754 Common - ABC transporter, ATP-binding/permease protein Ldb2142 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 104774062 Common - Putative fumarate reductase (flavoprotein) Ldb1112 62 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 104773887 Common obgE GTPase ObgE Ldb0817 247 COG0536 Obg, Predicted GTPase General function prediction only 104773935 Common mvaS Hydroxymethylglutaryl-coenzyme A synthase Ldb0881 78 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 104774700 Common - translation-associated GTPase Ldb2051 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 104774667 Nonpathogen epsIB EpsIB, Hypothetical protein Ldb2010 2 COG3944 COG3944, Capsular polysaccharide biosynthesis protein Cell envelope biogenesis, outer membrane 104773278 Nonpathogen - hypothetical protein Ldb0030 1 None None None 104774138 Common - RNA polymerase sigma factor Ldb1245 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 104774583 Common ndt2 Nucleoside deoxyribosyltransferase Ldb1887 6 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 104774501 Nonpathogen - hypothetical protein Ldb1729 1 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 104774276 Common - Serine/threonine protein kinase Ldb1409 158 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 104774084 Nonpathogen - hypothetical protein Ldb1156 1 None None None 104773393 Common - Putative esterase/lipase Ldb0191 41 COG0657 Aes, Esterase/lipase Lipid metabolism 104774307 Common purK Phosphoribosylaminoimidazole carboxylase, ATPasesubunit Ldb1445 194 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 104774377 Common fba Fructose-bisphosphate aldolase Ldb1544 177 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 104773584 Nonpathogen - hypothetical protein Ldb0446 1 None None None 104774250 Common - hypothetical protein Ldb1373 28 COG2739 COG2739, Uncharacterized protein conserved in bacteria Function unknown 104773423 Nonpathogen - hypothetical protein Ldb0229 1 None None None 104774009 Common - Putative acylaminoacyl-peptidase Ldb1011 108 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 104773701 Common - rRNA methylase Ldb0591 157 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 104774368 Common pyrD2 Dihydroorotate dehydrogenase Ldb1530 233 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 104774720 Common - Putative transcriptional regulator (TetR family) Ldb2071 16 None None None 104773464 Common - hypothetical protein Ldb0299 5 None None None 104774482 Common rfbA Putative glucose-1-phosphate thymidylyltransferase Ldb1695 215 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 104774257 Common oppB Oligopeptide ABC transporter, permease protein Ldb1384 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 104774003 Common - hypothetical protein Ldb1003 8 COG5353 COG5353, Uncharacterized protein conserved in bacteria Function unknown 104774453 Nonpathogen - hypothetical protein Ldb1652 1 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 104773287 Common - Putative helicase Ldb0044 156 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 104774682 Common - ABC transporter, ATP-binding protein Ldb2030 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 104774644 Common - Transposase Ldb1979 88 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773919 Nonpathogen - hypothetical protein Ldb0863 1 None None None 104773337 Common ldh L-lactate dehydrogenase Ldb0120 160 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 104774773 Nonpathogen - Hypothetical membrane protein Ldb2163 1 None None None 104773552 Common rplN 50S ribosomal protein L14 Ldb0406 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 104774038 Common - hypothetical protein Ldb1059 76 COG2013 COG2013, Uncharacterized conserved protein Function unknown 104773331 Nonpathogen - hypothetical protein Ldb0114 1 None None None 104773994 Common parC DNA topoisomerase IV subunit A Ldb0994 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 104774567 Common rnr Exoribonuclease R Ldb1833 194 COG0557 VacB, Exoribonuclease R Transcription 104774595 Nonpathogen - Hypothetical membrane protein Ldb1902 1 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 104774141 Common glyS Glycyl-tRNA synthetase, beta subunit Ldb1248 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 104773723 Common uvrA Excinuclease ABC, subunit A Ldb0615 241 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 104774526 Common - Hypothetical membrane protein Ldb1766 34 COG3548 COG3548, Predicted integral membrane protein Function unknown 104774219 Common cdsA Phosphatidate cytidylyltransferase Ldb1340 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 104774660 Common epsI-I EpsI-I, Hypothetical membrane protein Ldb2003 2 None None None 104773441 Common tyrS Tyrosyl-tRNA synthetase Ldb0256 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104774206 Nonpathogen - hypothetical protein Ldb1324 1 None None None 104773345 Common - Two-component system, response regulator Ldb0135 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 104773665 Common - Conserved hypothetical protein (Cystathionine beta-lyase family) Ldb0546 29 COG4100 COG4100, Cystathionine beta-lyase family protein involved in aluminum resistance Inorganic ion transport and metabolism 104774322 Common - Permease Ldb1471 56 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104773660 Nonpathogen - hypothetical protein Ldb0540 1 None None None 104774327 Common - hypothetical protein Ldb1479 74 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 104773360 Common - ABC transporter, ATP-binding protein Ldb0154 249 COG4586 COG4586, ABC-type uncharacterized transport system, ATPase component General function prediction only 104773392 Common - hypothetical protein Ldb0189 26 COG5438 COG5438, Predicted multitransmembrane protein Function unknown 104774241 Nonpathogen - hypothetical protein Ldb1362 2 None None None 104773739 Common pta Phosphate acetyltransferase Ldb0643 165 COG0280 Pta, Phosphotransacetylase Energy production and conversion 104774676 Nonpathogen - hypothetical protein Ldb2024 1 None None None 104773474 Common - hypothetical protein Ldb0313 42 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 104774210 Common rbfA Ribosome-binding factor A Ldb1331 151 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 104773999 Common mvk Mevalonate kinase Ldb0999 41 COG1577 ERG12, Mevalonate kinase Lipid metabolism 104773710 Common - Putative phosphohydrolase (HD superfamily) Ldb0600 79 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 104774769 Common - Na(+)/H(+) antiporter Ldb2159 203 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 104774357 Common fpg DNA-formamidopyrimidine glycosylase Ldb1511 182 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 104773282 Common - ABC transporter, ATP-binding protein Ldb0035 249 COG4619 COG4619, ABC-type uncharacterized transport system, ATPase component General function prediction only 104774098 Nonpathogen - hypothetical protein Ldb1173 4 None None None 104774262 Common recG ATP-dependent DNA helicase RecG Ldb1389 242 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 104773375 Common - Amino acid ABC transporter, substrate binding / permease protein Ldb0169 178 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104773269 Common dnaC Replicative DNA helicase DnaC Ldb0012 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 104773305 Common - hypothetical protein Ldb0075 3 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 104774489 Common - Acetaldehyde dehydrogenase Ldb1707 177 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 104773627 Common - Putative permease Ldb0502 116 COG0679 COG0679, Predicted permeases General function prediction only 104774233 Common - hypothetical protein Ldb1354 11 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 104773943 Common aspS aspartyl-tRNA synthetase Ldb0889 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773795 Common atpD F0F1 ATP synthase subunit beta Ldb0711 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 104774468 Common - tRNA/rRNA methyltransferase Ldb1678 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 104774315 Common cfa Cyclopropane-fatty-acyl-phospholipid synthase Ldb1461 137 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 104774091 Common - hypothetical protein Ldb1163 12 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 104773985 Common - ABC transporter, permease protein Ldb0975 25 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 104773910 Common rpsA 30S ribosomal protein S1 Ldb0851 233 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 104773804 Common - recombination factor protein RarA Ldb0720 245 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 104773894 Nonpathogen - hypothetical protein Ldb0833 1 None None None 104773430 Nonpathogen - hypothetical protein Ldb0245 1 None None None 104773532 Common clpC ATP-dependent Clp protease, ATP-binding subunit Ldb0383 223 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 104774345 Common - GTP-binding protein Ldb1499 28 COG1161 COG1161, Predicted GTPases General function prediction only 104773259 Common dnaN DNA polymerase III, beta chain Ldb0002 214 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 104773546 Common rpsS 30S ribosomal protein S19 Ldb0400 241 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 104774703 Common parA Chromosome partitioning protein ParA Ldb2054 233 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 104773578 Nonpathogen - hypothetical protein Ldb0432 1 None None None 104773369 Nonpathogen - hypothetical protein Ldb0163 1 None None None 104773504 Common prs1 Ribose-phosphate pyrophosphokinase Ldb0350 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 104773639 Common udk1 uridine kinase Ldb0516 84 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 104774770 Common - hypothetical protein Ldb2160 21 None None None 104773848 Common ftsW Cell division protein FtsW Ldb0764 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 104773260 Common - hypothetical protein Ldb0003 38 COG2501 COG2501, Uncharacterized conserved protein Function unknown 104773472 Common mmuM homocysteine methyltransferase Ldb0311 158 COG2040 MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) Amino acid transport and metabolism 104773811 Common valS valyl-tRNA synthetase Ldb0727 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104774102 Common gapN NADP-dependent glyceraldehyde-3-phosphate dehydrogenase Ldb1179 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 104774662 Common epsIG EpsIG, Putative glycosyltransferase Ldb2005 16 COG5017 COG5017, Uncharacterized conserved protein Function unknown 104773675 Nonpathogen - hypothetical protein Ldb0559 1 None None None 104773885 Common - Inosine-uridine preferring nucleoside hydrolase Ldb0815 79 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 104774819 Common rpmH 50S ribosomal protein L34 Ldb2218 189 None None None 104774466 Nonpathogen - hypothetical protein Ldb1676 3 None None None 104774125 Common - hypothetical protein Ldb1218 141 COG0327 COG0327, Uncharacterized conserved protein Function unknown 104774403 Nonpathogen - hypothetical protein Ldb1597 1 None None None 104773426 Common - hypothetical protein Ldb0232 142 COG0344 COG0344, Predicted membrane protein Function unknown 104773414 Common pepO1 Endopeptidase Ldb0218 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 104774444 Common pyrR2 Pyrimidine operon regulatory protein / Uracil phosphoribosyltransferase Ldb1638 124 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 104773713 Common comFA Putative competence protein ComFA Ldb0603 74 COG4098 comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) DNA replication, recombination, and repair 104773433 Common folC2 Folylpolyglutamate synthase Ldb0248 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 104773601 Common - Putative muramidase Ldb0464 67 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 104774153 Nonpathogen - hypothetical protein Ldb1266 1 None None None 104773490 Nonpathogen - hypothetical protein Ldb0333 1 None None None 104774286 Common crtE Geranylgeranyl pyrophosphate synthase Ldb1422 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 104774192 Common - Transcriptional regulator (ArsR family) Ldb1307 105 COG0640 ArsR, Predicted transcriptional regulators Transcription 104774184 Nonpathogen - hypothetical protein Ldb1297 2 None None None 104773732 Common cggR Central glycolytic genes regulator Ldb0634 35 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 104774757 Common dltD D-alanyl transfer protein DltD Ldb2145 12 COG3966 DltD, Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cell envelope biogenesis, outer membrane 104773449 Common oppCII Oligopeptide ABC transporter, permease protein Ldb0283 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 104774606 Common - Putative helicase Ldb1919 32 COG3973 COG3973, Superfamily I DNA and RNA helicases General function prediction only 104774295 Common rplU 50S ribosomal protein L21 Ldb1431 196 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 104774204 Nonpathogen - hypothetical protein Ldb1322 1 None None None 104774556 Common sufD Conserved protein involved in Fe/S cluster assembly Ldb1820 174 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 104773871 Common - ABC transporter, ATP-binding protein Ldb0793 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 104774638 Common - ABC transporter, substrate-binding protein Ldb1968 52 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 104774530 Common pgm Phosphoglucomutase Ldb1773 226 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 104774280 Common priA PriA (Primosomal protein N') Ldb1413 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 104773974 Common pstS Phosphate ABC transporter, phosphate binding protein Ldb0956 109 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 104773779 Nonpathogen - hypothetical protein Ldb0691 3 COG4767 VanZ, Glycopeptide antibiotics resistance protein Defense mechanisms 104774601 Common efp2 Elongation factor P (EF-P) Ldb1911 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 104774571 Common - Putative glycosyltransferase Ldb1837 125 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 104773866 Common - Peptide binding protein Ldb0784 180 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 104773789 Common atpB F0F1 ATP synthase subunit A Ldb0705 202 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 104774799 Common dgk Deoxyguanosine kinase Ldb2197 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 104774488 Nonpathogen - hypothetical protein Ldb1706 4 COG4720 COG4720, Predicted membrane protein Function unknown 104774022 Common - hypothetical protein Ldb1026 48 COG2848 COG2848, Uncharacterized conserved protein Function unknown 104773528 Nonpathogen - Hypothetical membrane protein Ldb0374 1 None None None 104773906 Common rluB Pseudouridylate synthase Ldb0847 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 104773550 Common rpmC 50S ribosomal protein L29 Ldb0404 174 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 104773458 Common - UmuC-like DNA-repair protein Ldb0293 177 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 104773425 Common - Putative transcriptional regulator (LytR family) Ldb0231 63 COG1316 LytR, Transcriptional regulator Transcription 104774290 Common nusB Transcription antitermination protein NusB Ldb1426 113 COG0781 NusB, Transcription termination factor Transcription 104773930 Common - hypothetical protein Ldb0876 36 COG2357 COG2357, Uncharacterized protein conserved in bacteria Function unknown 104774161 Common smf DNA processing protein Ldb1274 211 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 104774390 Common - Putative membrane-associated phosphatase Ldb1573 64 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 104773658 Common hprT hypoxanthine-guanine phosphoribosyltransferase Ldb0538 151 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 104774177 Common - Transcriptional regulator (LysR family) Ldb1290 186 COG0583 LysR, Transcriptional regulator Transcription 104773523 Common hslO 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33) Ldb0369 140 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 104774650 Nonpathogen - hypothetical protein Ldb1986 1 None None None 104773497 Common - Deoxyribonuclease (TatD family) Ldb0343 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 104774711 Common - Putative transcriptional regulator (TetR family) Ldb2062 8 COG1309 AcrR, Transcriptional regulator Transcription 104773685 Common - hypothetical protein Ldb0573 3 None None None 104774013 Common - hypothetical protein Ldb1015 13 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 104774428 Common - Putative acetyltransferase Ldb1622 108 COG0456 RimI, Acetyltransferases General function prediction only 104774657 Common epsIM EpsIM, Putative glycosyltransferase Ldb1998 192 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 104773536 Common rpoC DNA-directed RNA polymerase subunit beta' Ldb0387 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 104774189 Common - hypothetical protein Ldb1304 196 COG0628 PerM, Predicted permease General function prediction only 104774271 Common - hypothetical protein Ldb1404 5 COG3889 COG3889, Predicted solute binding protein General function prediction only 104773763 Common msrA Peptide methionine sulfoxide reductase Ldb0673 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 104774599 Common pepPN Prolyl aminopeptidase Ldb1909 65 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 104774075 Common - Putative multidrug efflux protein Ldb1133 45 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 104774432 Common - Putative acyl-ACP (acyl-carrier-protein) thioesterase Ldb1626 23 COG3884 FatA, Acyl-ACP thioesterase Lipid metabolism 104773924 Common - hypothetical protein Ldb0870 3 None None None 104773950 Common acpP2 Acyl carrier protein (ACP) Ldb0901 193 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 104774439 Common recR Recombination protein RecR Ldb1633 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 104774631 Common epsIIA EpsIIA, Transcriptional regulator of eps operon (LytR family) Ldb1953 62 COG1316 LytR, Transcriptional regulator Transcription 104774223 Common tsf elongation factor Ts Ldb1344 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 104773544 Common rplW 50S ribosomal protein L23 Ldb0398 209 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 104774070 Common - Hypothetical membrane protein Ldb1123 2 None None None 104774089 Common - hypothetical protein Ldb1161 7 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 104774472 Nonpathogen - hypothetical protein Ldb1682 1 None None None 104774814 Common pox1 Pyruvate oxidase Ldb2213 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 104774069 Nonpathogen - hypothetical protein Ldb1122 1 None None None 104774337 Common - hypothetical protein Ldb1491 104 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 104774025 Common - Permease Ldb1031 77 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 104774051 Common - ABC transporter, permease protein Ldb1089 14 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 104773983 Common - ABC transporter, ATP-binding protein Ldb0973 248 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 104774449 Common - Putative penicillin binding protein Ldb1645 31 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 104773271 Common - ABC transporter, ATP-binding/permease protein Ldb0014 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 104773489 Common - hypothetical protein Ldb0332 2 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 104774039 Common - Peptide binding protein Ldb1060 149 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 104773561 Common rplO 50S ribosomal protein L15 Ldb0415 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 104773897 Nonpathogen - hypothetical protein Ldb0836 1 None None None 104773957 Common accD Acetyl-CoA carboxylase, beta subunit Ldb0908 218 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 104774613 Common - Hypothetical membrane protein Ldb1930 3 COG4767 VanZ, Glycopeptide antibiotics resistance protein Defense mechanisms 104773782 Nonpathogen - Hypothetical membrane protein Ldb0698 1 None None None 104773338 Common - Permease Ldb0121 163 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104774565 Nonpathogen - hypothetical protein Ldb1831 1 None None None 104774550 Nonpathogen - hypothetical protein Ldb1805 1 None None None 104773289 Common - Putative transcriptional regulator Ldb0048 39 COG1959 COG1959, Predicted transcriptional regulator Transcription 104773687 Nonpathogen - hypothetical protein Ldb0575 1 None None None 104774032 Nonpathogen - Hypothetical membrane protein Ldb1047 1 None None None 104774581 Common - Putative esterase Ldb1885 87 COG0657 Aes, Esterase/lipase Lipid metabolism 104773737 Common - Hydrolase (HAD superfamily) Ldb0641 123 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 104773285 Common - hypothetical protein Ldb0038 14 COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) Cell envelope biogenesis, outer membrane 104773594 Common - Cation transporting P-type ATPase (probable Ca2+ transporter) Ldb0456 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 104774785 Common adeC Adenine deaminase Ldb2182 77 COG1001 AdeC, Adenine deaminase Nucleotide transport and metabolism 104774329 Common pbp Penicillin-binding protein Ldb1483 170 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 104773703 Common ftsK Cell division protein FtsK Ldb0593 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 104774007 Common - Hydrolase (HAD superfamily) Ldb1007 114 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 104774642 Nonpathogen - hypothetical protein Ldb1977 3 None None None 104774619 Nonpathogen - hypothetical protein Ldb1936 1 None None None 104773698 Common - Putative 3-carboxymuconate cyclase Ldb0588 56 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 104774524 Common thrC threonine synthase Ldb1761 132 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 104773677 Common - Methyltransferase Ldb0561 195 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 104773333 Common metE Putative methionine synthase Ldb0116 39 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 104774727 Common citT 2-oxoglutarate/malate translocator Ldb2085 76 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 104774309 Common - hypothetical protein Ldb1447 13 COG3860 COG3860, Uncharacterized protein conserved in bacteria Function unknown 104774375 Common pbp2A Penicillin-binding protein 2A Ldb1542 204 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 104773691 Common mecA adaptor protein Ldb0579 13 COG4862 MecA, Negative regulator of genetic competence, sporulation and motility Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion 104774361 Common - hypothetical protein Ldb1523 203 COG0073 ARC1, EMAP domain General function prediction only 104774067 Nonpathogen - hypothetical protein Ldb1120 1 None None None 104773933 Common - Acetyl-CoA acetyltransferase Ldb0879 175 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 104774624 Common epsII-I EpsII-I, Putative glycosyltransferase Ldb1943 14 None None None 104773744 Common potB1 Spermidine/putrescine ABC transporter, permease protein Ldb0648 180 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 104774705 Common gidB glucose-inhibited division protein B Ldb2056 194 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 104773354 Nonpathogen - Hypothetical membrane protein Ldb0144 1 None None None 104774060 Nonpathogen - hypothetical protein Ldb1107 1 None None None 104773606 Common gatA Glutamyl-tRNA(Gln) amidotransferase subunit A Ldb0469 221 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 104774484 Common - Permease Ldb1699 121 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104773800 Nonpathogen - hypothetical protein Ldb0716 1 None None None 104773571 Common cbiO2 Putative cobalt ABC transporter, ATP-binding protein Ldb0425 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 104773386 Common prs2 Ribose-phosphate pyrophosphokinase Ldb0180 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 104773992 Common - hypothetical protein Ldb0992 157 COG0344 COG0344, Predicted membrane protein Function unknown 104774173 Nonpathogen - hypothetical protein Ldb1286 1 None None None 104774057 Common - Putative acetyltransferase Ldb1101 112 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 104774788 Common - ABC transporter, permease protein Ldb2185 122 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 104774680 Common - hypothetical protein Ldb2028 7 COG3610 COG3610, Uncharacterized conserved protein Function unknown 104773857 Common rpsO 30S ribosomal protein S15 Ldb0773 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 104773575 Common rpsI 30S ribosomal protein S9 Ldb0429 248 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 104773296 Nonpathogen - Hypothetical membrane protein Ldb0063 1 None None None 104774806 Nonpathogen - hypothetical protein Ldb2205 1 None None None 104773648 Nonpathogen - Hypothetical membrane protein Ldb0527 1 None None None 104773462 Common guaB Inosine-5-monophosphate dehydrogenase Ldb0297 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 104774689 Common - ABC transporter, ATP-binding protein Ldb2038 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 104774227 Common asd Aspartate semialdehyde dehydrogenase Ldb1348 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 104774507 Nonpathogen - hypothetical protein Ldb1735 1 None None None 104774546 Common - PTS system, mannose-specific enzyme IIC component Ldb1800 35 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 104773730 Common - ABC transporter, permease protein Ldb0631 49 COG4120 COG4120, ABC-type uncharacterized transport system, permease component General function prediction only 104773796 Common atpC H+ transporting ATPase / ATP synthase, epsilon subunit Ldb0712 134 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 104774355 Common - hypothetical protein Ldb1509 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 104774028 Common xerS site-specific tyrosine recombinase XerS Ldb1043 209 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104774096 Common - Putative RNA methylase Ldb1171 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 104773521 Common - hypothetical protein Ldb0367 220 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 104773625 Common glmS D-fructose-6-phosphate amidotransferase Ldb0494 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 104773633 Common murI Glutamate racemase Ldb0510 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 104774274 Common - Putative thiamine pyrophosphokinase Ldb1407 27 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 104774118 Nonpathogen - hypothetical protein Ldb1204 1 None None None 104773961 Common - hypothetical protein Ldb0913 3 None None None 104773303 Common - hypothetical protein Ldb0073 38 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 104773367 Common - hypothetical protein Ldb0161 131 COG1704 LemA, Uncharacterized conserved protein Function unknown 104773729 Common clpP ATP-dependent Clp protease proteolytic subunit Ldb0624 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 104773827 Common ftsA Cell division protein FtsA Ldb0743 175 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 104774414 Common - ATP-dependent helicase (DEAD/DEAH box family) Ldb1608 248 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 104773309 Nonpathogen - hypothetical protein Ldb0079 3 None None None 104774762 Nonpathogen - hypothetical protein Ldb2150 1 None None None 104774264 Common - hypothetical protein Ldb1391 31 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 104773399 Common - Putative protein tyrosine/serine phosphatase Ldb0200 48 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 104774366 Common - Putative hydrolase (HIT family) Ldb1528 234 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 104773502 Common gcaD UDP-N-acetylglucosamine pyrophosphorylase Ldb0348 235 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 104774664 Common epsIE EpsIE, Putative glycosyltransferase Ldb2007 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 104774231 Common - ABC transporter, ATP-binding/permease protein Ldb1352 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774000 Common addB ATP-dependent deoxyribonuclease subunit B Ldb1000 23 COG3857 AddB, ATP-dependent nuclease, subunit B DNA replication, recombination, and repair 104773839 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Ldb0755 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 104773318 Common - Oxidoreductase (aldo/keto reductase family) Ldb0095 157 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 104773721 Common trxB1 Thioredoxin reductase Ldb0613 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 104773846 Common def peptide deformylase Ldb0762 209 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 104773452 Common pepG Aminopeptidase G Ldb0287 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 104774738 Common - Putative protein tyrosine/serine phosphatase Ldb2096 46 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 104774016 Common fhs Formate-tetrahydrofolate ligase Ldb1020 89 COG2759 MIS1, Formyltetrahydrofolate synthetase Nucleotide transport and metabolism 104774217 Common proS prolyl-tRNA synthetase Ldb1338 244 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773262 Common gyrB DNA gyrase, subunit B Ldb0005 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 104773968 Nonpathogen - hypothetical protein Ldb0920 1 None None None 104773483 Common - Putative Transposase Ldb0326 68 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773557 Common rplF 50S ribosomal protein L6 Ldb0411 243 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 104773667 Nonpathogen - Hypothetical membrane protein Ldb0548 1 None None None 104773662 Common - PTS system, enzyme IIC component (putative cellobiose-specific) Ldb0542 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 104774124 Common pepT1 peptidase T Ldb1217 59 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 104774143 Common recO DNA repair protein RecO (Recombination protein O) Ldb1250 45 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 104773437 Common - Amino acid ABC transporter, permease protein Ldb0252 169 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104773807 Common ezrA septation ring formation regulator EzrA Ldb0723 50 COG4477 EzrA, Negative regulator of septation ring formation Cell division and chromosome partitioning 104773390 Common - hypothetical protein Ldb0184 3 COG1754 COG1754, Uncharacterized C-terminal domain of topoisomerase IA General function prediction only 104774324 Common miaA tRNA isopentenyltransferase Ldb1476 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 104774812 Common - hypothetical protein Ldb2211 2 None None None 104774767 Common - hypothetical protein Ldb2157 12 COG0517 COG0517, FOG: CBS domain General function prediction only 104774674 Common - hypothetical protein Ldb2022 117 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 104774652 Nonpathogen - hypothetical protein Ldb1988 1 None None None 104774659 Common glf2 EpsIJ, UDP-galactopyranose mutase Ldb2002 63 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 104773672 Common pepM Methionine aminopeptidase Ldb0556 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 104773510 Common rpmE2 50S ribosomal protein L31 type B Ldb0356 162 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 104774243 Common rplS 50S ribosomal protein L19 Ldb1364 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 104774159 Common gidC tRNA (uracil-5-)-methyltransferase Gid Ldb1272 193 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 104773519 Common - hypothetical protein Ldb0365 3 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 104774603 Common - Putative lipase Ldb1913 4 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 104774317 Nonpathogen - hypothetical protein Ldb1464 3 None None None 104774388 Common - Putative polysaccharide transport protein Ldb1569 33 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 104774122 Common lepB signal peptidase I Ldb1215 172 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 104773439 Common - Amino acid ABC transporter, substrate binding protein Ldb0254 179 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 104774697 Common - Two-component system, response regulator Ldb2046 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 104774426 Common - ABC transporter, ATP-binding protein Ldb1620 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 104774536 Nonpathogen - Hypothetical membrane protein Ldb1790 1 None None None 104774381 Nonpathogen - hypothetical protein Ldb1552 1 None None None 104773837 Common - Putative cysteine sulfinate desulfinase/cysteine desulfurase Ldb0753 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 104774568 Common secG preprotein translocase subunit SecG Ldb1834 6 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 104774140 Common dnaG DNA primase Ldb1247 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 104774182 Common - hypothetical protein Ldb1295 6 None None None 104773868 Common thyA thymidylate synthase Ldb0787 143 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 104774608 Common - Putative fructose-2,6-bisphosphatase Ldb1921 34 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 104773512 Common - ATP-dependent helicase (DEAD/DEAH box family) Ldb0358 242 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 104774636 Nonpathogen - hypothetical protein Ldb1963 1 COG3846 TrbL, Type IV secretory pathway, TrbL components Intracellular trafficking and secretion 104774363 Common - tRNA (guanine-N(7)-)-methyltransferase Ldb1525 177 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 104774347 Common rpmI 50S ribosomal protein L35 Ldb1501 142 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 104773818 Nonpathogen - hypothetical protein Ldb0734 1 None None None 104774490 Common - ABC transporter, permease protein Ldb1708 64 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 104774151 Common - hypothetical protein Ldb1258 72 COG1284 COG1284, Uncharacterized conserved protein Function unknown 104773412 Common - hypothetical protein Ldb0216 59 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104773620 Nonpathogen - hypothetical protein Ldb0486 1 None None None 104774715 Nonpathogen - hypothetical protein Ldb2066 1 None None None 104774695 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase Ldb2044 208 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 104774100 Common pcp Pyroglutamyl-peptidase I Ldb1175 58 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 104773949 Common fabH 3-oxoacyl-[acyl-carrier-protein] synthase III Ldb0900 201 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 104773976 Common pstA Phosphate ABC transporter, permease protein Ldb0958 219 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 104774817 Common - hypothetical protein Ldb2216 213 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 104773280 Common - Putative Ser/Thr protein kinase Ldb0032 8 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 104773616 Common - Transcriptional regulator (Crp family) Ldb0482 155 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 104773582 Common - Aromatic amino acid aminotransferase Ldb0441 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 104774104 Common - Glycine betaine ABC transporter, ATP-binding protein Ldb1181 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 104774401 Common pepQ1 X-Pro dipeptidase PepQ Ldb1594 247 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 104773829 Common - hypothetical protein Ldb0745 56 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 104774408 Common trxA1 Thioredoxin Ldb1602 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 104773854 Common comEC Competence protein ComEC Ldb0770 127 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 104774519 Common - Transposase Ldb1752 91 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104774516 Common pepV dipeptidase PepV Ldb1746 127 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 104773777 Common - Two-component system, sensor histidine kinase Ldb0689 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 104774474 Common - hypothetical protein Ldb1684 117 COG2855 COG2855, Predicted membrane protein Function unknown 104774771 Common - hypothetical protein Ldb2161 23 COG1434 COG1434, Uncharacterized conserved protein Function unknown 104774437 Common tmk Thymidylate kinase Ldb1631 228 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 104773922 Common cas3 CRISPR-associated helicase Cas3 Ldb0868 80 COG1203 COG1203, Predicted helicases General function prediction only 104774086 Common pgp Putative phosphoglycolate phosphatase Ldb1158 178 COG0546 Gph, Predicted phosphatases General function prediction only 104773534 Nonpathogen - hypothetical protein Ldb0385 1 None None None 104774132 Common - hypothetical protein Ldb1231 9 None None None 104773761 Common - hypothetical protein Ldb0671 12 None None None 104774722 Nonpathogen - hypothetical protein Ldb2076 1 None None None 104774072 Common - Putative integrase/recombinase Ldb1128 83 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104773273 Nonpathogen - Hypothetical membrane protein Ldb0016 1 None None None 104773831 Common - Putative RNA binding protein Ldb0747 31 COG2302 COG2302, Uncharacterized conserved protein, contains S4-like domain Function unknown 104773542 Common rplC 50S ribosomal protein L3 Ldb0396 225 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 104774592 Nonpathogen - hypothetical protein Ldb1898 1 COG0400 COG0400, Predicted esterase General function prediction only 104774194 Common recJ RecJ, single-stranded DNA specific exonuclease Ldb1309 204 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 104773477 Common mscL Large-conductance mechanosensitive channel Ldb0318 144 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 104773311 Nonpathogen - hypothetical protein Ldb0083 1 None None None 104773558 Common rplR 50S ribosomal protein L18 Ldb0412 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 104774463 Common nusG Transcription antitermination protein nusG Ldb1667 215 COG0250 NusG, Transcription antiterminator Transcription 104774335 Common - tRNA/rRNA methyltransferase Ldb1489 199 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 104774748 Common - Putative permease Ldb2119 76 COG2962 RarD, Predicted permeases General function prediction only 104774577 Common - Putative RNA polymerase sigma factor (ECF subfamily) Ldb1881 8 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 104774225 Common - hypothetical protein Ldb1346 121 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 104773411 Common nrdG Anaerobic ribonucleotide reductase activator protein Ldb0212 58 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 104773407 Nonpathogen - hypothetical protein Ldb0208 2 None None None 104774450 Common hlbB Histone-like DNA-binding protein Ldb1646 214 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 104774611 Nonpathogen - hypothetical protein Ldb1926 1 None None None 104774479 Common - hypothetical protein Ldb1692 27 COG0439 AccC, Biotin carboxylase Lipid metabolism 104774077 Nonpathogen - hypothetical protein Ldb1145 1 None None None 104773325 Common - Putative oxidoreductase Ldb0102 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 104773904 Common - hypothetical protein Ldb0845 149 COG1354 COG1354, Uncharacterized conserved protein Function unknown 104774041 Common - Putative multidrug efflux protein Ldb1074 45 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 104774050 Common - ABC transporter, ATP-binding protein Ldb1088 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 104774292 Common efP1 elongation factor P Ldb1428 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 104774392 Common metK S-adenosylmethionine synthetase Ldb1575 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 104774497 Common - Transcriptional regulator (GntR family) Ldb1715 119 COG1725 COG1725, Predicted transcriptional regulators Transcription 104774034 Common hsdM Type I restriction-modification system, modification subunit Ldb1052 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 104774175 Common - ABC transporter, ATP-binding/permease protein Ldb1288 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774702 Common parB1 Chromosome partitioning protein ParB Ldb2053 188 COG1475 Spo0J, Predicted transcriptional regulators Transcription 104773715 Common secA preprotein translocase subunit SecA Ldb0607 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 104774713 Nonpathogen - hypothetical protein Ldb2064 2 None None None 104774168 Common - hypothetical protein Ldb1281 78 COG1284 COG1284, Uncharacterized conserved protein Function unknown 104774455 Common rplL 50S ribosomal protein L7/L12 Ldb1657 200 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 104773774 Common ack Acetate kinase Ldb0686 161 COG0282 ackA, Acetate kinase Energy production and conversion 104773912 Common hlbA Histone-like DNA-binding protein Ldb0853 213 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 104774105 Common - Transcriptional regulator (DeoR family) Ldb1182 57 COG1959 COG1959, Predicted transcriptional regulator Transcription 104774095 Common - hypothetical protein Ldb1170 61 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 104773959 Common fabI enoyl-(acyl carrier protein) reductase Ldb0910 222 COG0623 FabI, Enoyl- acyl-carrier-protein 104774691 Common - PTS system, fructose-specific enzyme IIABC component Ldb2040 144 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 104774195 Common srtA Sortase Ldb1310 11 COG3764 SrtA, Sortase (surface protein transpeptidase) Cell envelope biogenesis, outer membrane 104773952 Common fabG 3-oxoacyl-[acyl-carrier-protein] reductase Ldb0903 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 104774653 Common - hypothetical protein Ldb1989 2 None None None 104774297 Common purD Phosphoribosylamine-glycine ligase Ldb1435 232 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 104774294 Common rpmA 50S ribosomal protein L27 Ldb1430 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 104774411 Common ruvX Putative Hollyday junction resolvase Ldb1605 188 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 104774522 Common - Aggregation promoting factor Ldb1755 6 COG5099 COG5099, RNA-binding protein of the Puf family, translational repressor Translation, ribosomal structure and biogenesis 104773840 Common - Putative fructose-2,6-bisphosphatase Ldb0756 168 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 104774284 Common recN RecN, ATPase involved in DNA repair Ldb1420 219 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 104774073 Nonpathogen - hypothetical protein Ldb1131 1 None None None 104773875 Nonpathogen - hypothetical protein Ldb0804 1 None None None 104774423 Common groEL chaperonin GroEL Ldb1617 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 104774716 Common - FMN-binding protein Ldb2067 8 None None None 104774470 Common cysS Cysteinyl-tRNA synthetase Ldb1680 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773863 Common - GTPase EngB Ldb0779 198 COG0218 COG0218, Predicted GTPase General function prediction only 104774055 Nonpathogen - hypothetical protein Ldb1099 1 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 104773564 Common infA Translation initiation factor IF-1 Ldb0418 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 104773963 Nonpathogen - hypothetical protein Ldb0915 1 None None None 104773471 Common - Putative transcriptional regulator (Crp family) Ldb0308 68 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 104774393 Common trxB2 Thioredoxin reductase Ldb1586 239 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 104774018 Common - Pseudouridylate synthase Ldb1022 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 104773920 Nonpathogen - hypothetical protein Ldb0865 1 None None None 104774475 Common gltX glutamyl-tRNA synthetase Ldb1685 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 104774229 Common - Homoserine dehydrogenase Ldb1350 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 104773903 Common - hypothetical protein Ldb0844 5 None None None 104773879 Common argS Arginyl-tRNA synthetase Ldb0809 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773776 Common - Two-component system, response regulator Ldb0688 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 104773568 Common rpoA DNA-directed RNA polymerase subunit alpha Ldb0422 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 104773908 Common - hypothetical protein Ldb0849 12 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 104773484 Nonpathogen - hypothetical protein Ldb0327 1 None None None 104773893 Common - hypothetical protein Ldb0827 16 COG4475 COG4475, Uncharacterized protein conserved in bacteria Function unknown 104774230 Common pheB hypothetical protein Ldb1351 14 COG4492 PheB, ACT domain-containing protein General function prediction only 104774607 Common - hypothetical protein Ldb1920 3 COG5549 COG5549, Predicted Zn-dependent protease Posttranslational modification, protein turnover, chaperones 104773689 Common ptsI Phosphoenolpyruvate-protein phosphotransferase (enzyme I of the phosphotransferase system) Ldb0577 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 104774610 Common - hypothetical protein Ldb1925 78 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 104774733 Nonpathogen - hypothetical protein Ldb2091 1 None None None 104774088 Nonpathogen - hypothetical protein Ldb1160 1 None None None 104773791 Common atpF H+ transporting ATPase / ATP synthase, B subunit Ldb0707 116 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 104774591 Common pepIP Proline iminopeptidase Ldb1896 96 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 104774430 Common - hypothetical protein Ldb1624 7 None None None 104773409 Common - Conserved hypothetical protein (ATP-grasp family) Ldb0210 22 COG3919 COG3919, Predicted ATP-grasp enzyme General function prediction only 104774446 Nonpathogen - hypothetical protein Ldb1640 1 None None None 104774618 Nonpathogen - hypothetical protein Ldb1935 1 None None None 104774332 Common pheT Phenylalanyl-tRNA synthetase, beta subunit Ldb1486 243 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 104774815 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA Ldb2214 192 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 104773549 Common rplP 50S ribosomal protein L16 Ldb0403 217 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 104774406 Common - Xanthosine triphosphate pyrophosphatase Ldb1600 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 104774512 Common - hypothetical protein Ldb1742 143 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 104773659 Common - Amino acid permease Ldb0539 192 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 104773832 Common ileS isoleucyl-tRNA synthetase Ldb0748 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104774491 Common - ABC transporter, ATP-binding protein Ldb1709 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 104773784 Common tdk thymidine kinase Ldb0700 101 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 104774714 Common - PTS system, glucose/glucoside-specific enzyme IIA component Ldb2065 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 104773495 Common - Cation transporting P-type ATPase (probable Mg2+ transporter) Ldb0341 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 104773263 Common gyrA DNA gyrase, subunit A Ldb0006 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 104773428 Nonpathogen - hypothetical protein Ldb0241 1 None None None 104774033 Common hsdR Type I restriction-modification system, restriction subunit Ldb1051 124 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 104773302 Common - hypothetical protein Ldb0072 7 None None None 104774106 Common htpX2 Protease Ldb1185 190 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 104773611 Common - Putative restriction endonuclease Ldb0474 40 COG1715 Mrr, Restriction endonuclease Defense mechanisms 104774399 Nonpathogen - hypothetical protein Ldb1592 4 None None None 104774200 Common hrcA heat-inducible transcription repressor Ldb1315 149 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 104774240 Common - hypothetical protein Ldb1361 29 None None None 104774792 Common - Oxidoreductase (aldo/keto reductase family) Ldb2189 204 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 104773775 Nonpathogen - hypothetical protein Ldb0687 1 None None None 104773443 Common - Aminoacylase Ldb0265 167 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 104773478 Common pncB nicotinate phosphoribosyltransferase Ldb0319 136 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 104773798 Common mreB2 Cell-shape-determining protein MreB Ldb0714 178 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 104774068 Common - Putative phosphotyrosine protein phosphatase Ldb1121 131 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 104774505 Common fabZ2 Hydroxymyristoyl-[acyl carrier protein] dehydratase Ldb1733 186 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 104774158 Common xerC Site-specific recombinase Ldb1271 226 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104774386 Nonpathogen - hypothetical protein Ldb1561 1 None None None 104774150 Nonpathogen - hypothetical protein Ldb1257 1 None None None 104773756 Nonpathogen - hypothetical protein Ldb0666 1 None None None 104774044 Common - Putative integrase/recombinase Ldb1079 83 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104773716 Common prfB Peptide chain release factor 2 (RF-2) Ldb0608 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 104774458 Nonpathogen - Hypothetical membrane protein Ldb1662 1 None None None 104774551 Common - Na(+)/H(+) antiporter Ldb1810 64 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 104774254 Common oppA2 Oligopeptide ABC transporter, substrate binding protein Ldb1381 106 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 104774188 Common - Cation transporting P-type ATPase (probable Cd2+/Mg2+ transporter) Ldb1301 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 104773410 Common nrdD anaerobic ribonucleoside triphosphate reductase Ldb0211 86 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 104773397 Nonpathogen ndt1 Nucleoside deoxyribosyltransferase Ldb0198 5 COG3613 COG3613, Nucleoside 2-deoxyribosyltransferase Nucleotide transport and metabolism 104773418 Nonpathogen - hypothetical protein Ldb0222 1 None None None 104774209 Common truB Pseudouridylate synthase Ldb1330 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 104773718 Common hprK HPr kinase/phosphorylase Ldb0610 80 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 104774310 Common - Putative permease Ldb1448 6 None None None 104773758 Nonpathogen - hypothetical protein Ldb0668 1 None None None 104773656 Nonpathogen - hypothetical protein Ldb0535 1 None None None 104774669 Common - Putative GTP-binding protein Ldb2012 214 COG2262 HflX, GTPases General function prediction only 104773346 Common - Two-component system, sensor histidine kinase Ldb0136 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 104773341 Common - hypothetical protein Ldb0125 201 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 104773773 Common - hypothetical protein Ldb0685 25 COG0827 COG0827, Adenine-specific DNA methylase DNA replication, recombination, and repair 104773820 Common mraW S-adenosyl-methyltransferase MraW Ldb0736 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 104773580 Common - hypothetical protein Ldb0438 49 COG1881 COG1881, Phospholipid-binding protein General function prediction only 104773316 Nonpathogen - hypothetical protein Ldb0093 1 None None None 104773554 Common rplE 50S ribosomal protein L5 Ldb0408 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 104773728 Common - hypothetical protein Ldb0623 54 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 104773378 Common - NAD-dependent deacetylase Ldb0172 148 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 104774019 Common carA3 carbamoyl phosphate synthase small subunit Ldb1023 231 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 104774245 Nonpathogen - hypothetical protein Ldb1368 1 None None None 104773364 Common - hypothetical protein Ldb0158 7 COG1944 COG1944, Uncharacterized conserved protein Function unknown 104773965 Nonpathogen - hypothetical protein Ldb0917 1 None None None 104773359 Common - Putative transcriptional regulator (AraC family) Ldb0153 49 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 104774166 Common hly Hemolysin-like protein Ldb1279 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 104773808 Common - Putative cysteine sulfinate desulfinase/cysteine desulfurase Ldb0724 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 104774671 Common - hypothetical protein Ldb2015 138 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 104773275 Common - ABC transporter, ATP-binding protein Ldb0021 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104773786 Common hemK Methylase of polypeptide chain release factors Ldb0702 226 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 104773265 Common ssb Single-stranded DNA-binding protein Ldb0008 213 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 104773396 Common nagA N-acetylglucosamine-6-phosphate deacetylase Ldb0197 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 104774352 Common thrS Threonyl-tRNA synthetase Ldb1506 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773624 Common - Transcriptional regulator (AsnC family) Ldb0493 155 COG1522 Lrp, Transcriptional regulators Transcription 104774301 Common purF Amidophosphoribosyltransferase Ldb1439 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 104774810 Nonpathogen - hypothetical protein Ldb2209 1 None None None 104774129 Nonpathogen - hypothetical protein Ldb1224 1 None None None 104774678 Nonpathogen - hypothetical protein Ldb2026 1 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 104774708 Common - Putative protein tyrosine/serine phosphatase Ldb2059 47 COG2365 COG2365, Protein tyrosine/serine phosphatase Signal transduction mechanisms 104773630 Nonpathogen - Hypothetical membrane protein Ldb0507 1 None None None 104773307 Nonpathogen - hypothetical protein Ldb0077 1 None None None 104774473 Common - Transcriptional regulator (LysR family) Ldb1683 189 COG0583 LysR, Transcriptional regulator Transcription 104773748 Common manB Phosphomannomutase Ldb0654 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 104774723 Common - hypothetical protein Ldb2077 6 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 104773980 Common - hypothetical protein Ldb0967 8 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 104773989 Common - Putative signal transduction protein Ldb0981 175 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 104774461 Common rplA 50S ribosomal protein L1 Ldb1665 241 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 104774483 Nonpathogen - hypothetical protein Ldb1696 1 None None None 104774349 Common - hypothetical protein Ldb1503 33 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 104774029 Common - Glycerate kinase Ldb1044 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 104773636 Common - hypothetical protein Ldb0513 17 COG4721 COG4721, Predicted membrane protein Function unknown 104774273 Nonpathogen - hypothetical protein Ldb1406 1 None None None 104774139 Common sigA RNA polymerase sigma factor RpoD Ldb1246 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 104773589 Common - Putative polysaccharide repeat unit transport protein Ldb0451 56 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 104774111 Nonpathogen - hypothetical protein Ldb1191 1 None None None 104774729 Nonpathogen - hypothetical protein Ldb2087 1 None None None 104774778 Common - Putative lipoprotein Ldb2170 85 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 104773591 Common - Glycosyltransferase Ldb0453 211 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 104774687 Common - hypothetical protein Ldb2036 5 COG4640 COG4640, Predicted membrane protein Function unknown 104773990 Nonpathogen - hypothetical protein Ldb0982 1 None None None 104773461 Common xpt xanthine phosphoribosyltransferase Ldb0296 37 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 104773815 Common mreB1 Cell-shape-determining protein MreB Ldb0731 235 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 104774666 Common epsIC EpsIC, Hypothetical protein Ldb2009 176 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 104774626 Common epsIIG EpsIIG, Putative glycosyltransferase Ldb1945 109 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 104773705 Common - Putative peptidase Ldb0595 143 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 104774693 Common fruR fructose repressor Ldb2042 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 104774379 Common - hypothetical protein Ldb1547 2 None None None 104774540 Nonpathogen - hypothetical protein Ldb1794 1 None None None 104774593 Common - hypothetical protein Ldb1900 5 None None None 104774620 Common tagD EpsIIN, Glycerol-3-phosphate cytidylyltransferase Ldb1937 95 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 104773932 Common - Two-component system, sensor histidine kinase Ldb0878 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 104773692 Common - hypothetical protein Ldb0582 2 None None None 104774578 Common serS seryl-tRNA synthetase Ldb1882 246 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773669 Common - UDP-N-acetylglucosamine 2-epimerase Ldb0553 156 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 104773939 Common relA GTP pyrophosphokinase Ldb0885 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 104774221 Common frr Ribosome recycling factor Ldb1342 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 104773576 Nonpathogen - hypothetical protein Ldb0430 1 None None None 104774065 Common - ABC transporter, permease protein Ldb1118 14 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 104773572 Common cbiQ Putative cobalt ABC transporter, permease protein Ldb0426 93 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 104774134 Nonpathogen - hypothetical protein Ldb1234 1 None None None 104773671 Common flaV Flavodoxin Ldb0555 59 COG0716 FldA, Flavodoxins Energy production and conversion 104773335 Nonpathogen - hypothetical protein Ldb0118 1 None None None 104773680 Nonpathogen - hypothetical protein Ldb0564 1 None None None 104773852 Common - hypothetical protein Ldb0768 30 COG3480 SdrC, Predicted secreted protein containing a PDZ domain Signal transduction mechanisms 104773436 Common - Amino Acid ABC transporter, permease protein Ldb0251 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104774529 Common pfk2 6-phosphofructokinase Ldb1772 161 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 104773481 Common - hypothetical protein Ldb0324 18 COG3326 COG3326, Predicted membrane protein Function unknown 104774265 Common rpmB 50S ribosomal protein L28 Ldb1392 47 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 104774237 Common - Glutamine-binding protein Ldb1358 176 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 104774789 Common - ABC transporter, permease protein Ldb2186 146 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 104773400 Common usp2 Conserved hypothetical protein (universal stressprotein family) Ldb0201 71 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 104774508 Nonpathogen - hypothetical protein Ldb1736 1 None None None 104773380 Common cls Cardiolipin synthase Ldb0174 148 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 104774097 Nonpathogen - hypothetical protein Ldb1172 1 None None None 104774647 Nonpathogen - Hypothetical membrane protein Ldb1982 1 None None None 104773469 Common - Putative phosphorylase (Pnp/Udp family) Ldb0306 53 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 104773801 Common rodA Rod-shape determining protein Ldb0717 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 104773326 Common - peptide deformylase Ldb0103 190 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 104774448 Common - Putative penicillin binding protein Ldb1644 60 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 104774587 Common - Putative transcriptional regulator (TetR family) Ldb1892 9 COG1309 AcrR, Transcriptional regulator Transcription 104774340 Common - hypothetical protein Ldb1494 10 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 104773645 Common ppx Exopolyphosphatase Ldb0522 46 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 104773421 Common - Putative amidase Ldb0225 11 COG5632 COG5632, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 104774152 Common - Aromatic amino acid aminotransferase Ldb1263 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 104774372 Common - hypothetical protein Ldb1539 37 COG4717 COG4717, Uncharacterized conserved protein Function unknown 104773844 Common - Putative hydrolase (metallo-beta-lactamase superfamily) Ldb0760 161 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 104773283 Common - ABC transporter, permease protein Ldb0036 70 COG0390 COG0390, ABC-type uncharacterized transport system, permease component General function prediction only 104774282 Common gmk1 Guanylate kinase Ldb1415 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 104773816 Common mreC Cell shape determining protein MreC Ldb0732 134 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 104773699 Common - PTS system, enzyme IIA component (putative glucitol/sorbitol-specific) Ldb0589 5 COG3731 SrlB, Phosphotransferase system sorbitol-specific component IIA Carbohydrate transport and metabolism 104773350 Common htrA HtrA-like serine protease Ldb0140 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 104773914 Common - hypothetical protein Ldb0855 10 COG4485 COG4485, Predicted membrane protein Function unknown 104774486 Nonpathogen - hypothetical protein Ldb1701 1 None None None 104774145 Common cdd Cytidine deaminase Ldb1252 113 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 104774130 Nonpathogen - hypothetical protein Ldb1226 1 None None None 104773736 Nonpathogen - hypothetical protein Ldb0640 2 COG4894 COG4894, Uncharacterized conserved protein Function unknown 104774780 Nonpathogen - hypothetical protein Ldb2174 1 None None None 104774563 Common - Hypothetical membrane protein Ldb1829 3 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 104773792 Common atpH H+ transporting ATPase / ATP synthase, delta subunit Ldb0708 152 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 104773540 Common fusA elongation factor G Ldb0394 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 104773547 Common rplV 50S ribosomal protein L22 Ldb0401 224 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 104773987 Nonpathogen - hypothetical protein Ldb0977 1 None None None 104774616 Nonpathogen - Hypothetical membrane protein Ldb1933 1 None None None 104774093 Common - Acyltransferase Ldb1165 104 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 104774634 Common - Putative transcriptional regulator (Xre family) Ldb1958 32 COG1476 COG1476, Predicted transcriptional regulators Transcription 104773682 Common prfC Peptide chain release factor 3 (RF-3) Ldb0566 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 104774289 Common folD Methylenetetrahydrofolate dehydrogenase / Methenyltetrahydrofolate cyclohydrolase Ldb1425 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 104774202 Common - Transposase Ldb1320 89 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104774046 Common - Hypothetical membrane protein Ldb1084 2 None None None 104774364 Common - ABC transporter, permease protein Ldb1526 12 COG4473 EcsB, Predicted ABC-type exoprotein transport system, permease component Intracellular trafficking and secretion 104773997 Common mvaK Phosphomevalonate kinase Ldb0997 31 COG1577 ERG12, Mevalonate kinase Lipid metabolism 104774278 Common - Putative RNA methylase Ldb1411 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 104773881 Common dfp Phosphopantothenoylcysteine synthetase/decarboxylase Ldb0811 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 104773566 Common rpsM 30S ribosomal protein S13 Ldb0420 246 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 104773768 Common comGA Putative competence protein ComGA Ldb0678 180 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 104773929 Common - hypothetical protein Ldb0875 169 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 104774339 Common - Two-component system, response regulator Ldb1493 214 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 104773813 Common - Putative phosphatase Ldb0729 130 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 104774302 Common purL Phosphoribosylformylglycinamidine synthase II Ldb1440 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 104774054 Common - Putative fumarate reductase (flavoprotein) Ldb1095 62 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 104774330 Common - hypothetical protein Ldb1484 9 COG4485 COG4485, Predicted membrane protein Function unknown 104774183 Common - Hypothetical membrane protein Ldb1296 8 COG4269 COG4269, Predicted membrane protein Function unknown 104773927 Common - hypothetical protein Ldb0873 28 None None None 104774597 Common - Transposase Ldb1907 63 COG2826 Tra8, Transposase and inactivated derivatives, IS30 family DNA replication, recombination, and repair 104774460 Common - Glycosyltransferase Ldb1664 174 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 104774435 Common - hypothetical protein Ldb1629 116 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 104774296 Common - Conserved hypothetical protein (ArsC family) Ldb1432 97 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 104773524 Common - Peptide binding protein Ldb0370 176 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 104773873 Common - Putative fumarate reductase (flavoprotein) Ldb0795 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 104774081 Common - ABC transporter, ATP-binding/permease protein Ldb1150 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774023 Common fbpA Putative fibronectin-binding protein Ldb1027 83 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 104774600 Nonpathogen - hypothetical protein Ldb1910 1 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 104773767 Common - hypothetical protein Ldb0677 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 104774493 Common - hypothetical protein Ldb1711 74 COG1912 COG1912, Uncharacterized conserved protein Function unknown 104774299 Common purN Phosphoribosylglycinamide formyltransferase Ldb1437 224 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 104774197 Common dnaJ Chaperone protein DnaJ (heat shock protein) Ldb1312 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 104774395 Common - hypothetical protein Ldb1588 6 COG4478 COG4478, Predicted membrane protein Function unknown 104774235 Common lexA LexA repressor Ldb1356 170 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 104773562 Common secY preprotein translocase subunit SecY Ldb0416 238 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 104774421 Common mutL DNA mismatch repair protein MutL Ldb1615 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 104774718 Common - ABC transporter, ATP-binding protein Ldb2069 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 104773865 Common - hypothetical protein Ldb0783 33 COG0778 NfnB, Nitroreductase Energy production and conversion 104773877 Common - Aminotransferase Ldb0807 224 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 104773901 Common - hypothetical protein Ldb0842 42 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 104774212 Common - Putative ribosomal protein Ldb1333 11 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 104774746 Common pyrD1 Dihydroorotate dehydrogenase Ldb2114 237 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 104773870 Common - ABC transporter, substrate binding protein Ldb0792 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 104774036 Common - Integrase/recombinase Ldb1054 126 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104773889 Common - Short-chain dehydrogenase/reductase Ldb0821 233 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 104774186 Common - Amino Acid ABC transporter, substrate binding /permease protein Ldb1299 183 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104773652 Common rpiA Ribose 5-phosphate isomerase Ldb0531 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 104773861 Common tig trigger factor Ldb0777 209 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 104773754 Common crcB2 CrcB protein Ldb0662 42 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 104774169 Nonpathogen - hypothetical protein Ldb1282 1 None None None 104774795 Nonpathogen - hypothetical protein Ldb2193 1 None None None 104773416 Nonpathogen - hypothetical protein Ldb0220 1 None None None 104774252 Common smc Chromosome partition protein SMC Ldb1379 229 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 104773734 Common pgk phosphoglycerate kinase Ldb0636 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 104774259 Common oppD Oligopeptide ABC transporter, ATP-binding protein Ldb1386 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 104773802 Common usp1 Conserved hypothetical protein (universal stress protein family) Ldb0718 125 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 104774588 Nonpathogen - hypothetical protein Ldb1893 1 None None None 104774574 Nonpathogen - hypothetical protein Ldb1873 1 None None None 104774156 Common hslU ATP-dependent protease ATP-binding subunit Ldb1269 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 104773381 Common - hypothetical protein Ldb0175 10 COG4814 COG4814, Uncharacterized protein with an alpha/beta hydrolase fold General function prediction only 104774813 Common gnd 6-phosphogluconate dehydrogenase Ldb2212 173 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 104773643 Common glnP Glutamine ABC transporter, permease protein Ldb0520 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104774510 Common thiJ Putative 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein Ldb1740 99 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 104774765 Nonpathogen - hypothetical protein Ldb2154 1 None None None 104773515 Common - hypothetical protein Ldb0361 9 COG0517 COG0517, FOG: CBS domain General function prediction only 104773599 Common - hypothetical protein Ldb0461 12 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 104774477 Common - Transcriptional regulator (GntR family) Ldb1689 126 COG1725 COG1725, Predicted transcriptional regulators Transcription 104773834 Common - ADP-ribose pyrophosphatase Ldb0750 158 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 104774752 Common - PTS system, enzyme IIC component (putative cellobiose-specific) Ldb2123 33 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 104774553 Common sufB Conserved protein involved in Fe/S cluster assembly Ldb1817 188 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 104774287 Common xseB Exodeoxyribonuclease VII, small subunit Ldb1423 81 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 104774108 Common patC Cystathionine beta-lyase Ldb1187 227 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 104773362 Common - ABC transporter, permease protein Ldb0156 20 COG3694 COG3694, ABC-type uncharacterized transport system, permease component General function prediction only 104774794 Nonpathogen - hypothetical protein Ldb2191 1 None None None 104773445 Common - Putative hydrolase (HD superfamily) Ldb0272 55 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 104774397 Common - hypothetical protein Ldb1590 11 COG4470 COG4470, Uncharacterized protein conserved in bacteria Function unknown 104773291 Nonpathogen - hypothetical protein Ldb0053 1 None None None 104774404 Common - hypothetical protein Ldb1598 8 COG4768 COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain General function prediction only 104773824 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Ldb0740 211 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 104774763 Nonpathogen - hypothetical protein Ldb2151 1 None None None 104773899 Common pfk1 6-phosphofructokinase Ldb0838 156 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 104773383 Common - hypothetical protein Ldb0177 12 COG4086 COG4086, Predicted secreted protein Function unknown 104774350 Nonpathogen - Hypothetical membrane protein Ldb1504 1 None None None 104773526 Common - Putative tRNA-dihydrouridine synthase Ldb0372 209 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 104773371 Common - hypothetical protein Ldb0165 143 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 104773258 Common dnaA Chromosomal replication initiator protein dnaA Ldb0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 104773995 Common ppaC putative manganese-dependent inorganic pyrophosphatase Ldb0995 59 COG1227 PPX1, Inorganic pyrophosphatase/exopolyphosphatase Energy production and conversion 104773609 Common - hypothetical protein Ldb0472 5 COG3548 COG3548, Predicted integral membrane protein Function unknown 104773944 Nonpathogen - hypothetical protein Ldb0890 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 104774573 Nonpathogen - hypothetical protein Ldb1872 1 None None None 104773422 Common - Cation:Proton Antiporter Ldb0226 92 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 104773842 Common recD Exodeoxyribonuclease V alpha chain Ldb0758 140 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 104773277 Nonpathogen - hypothetical protein Ldb0029 1 None None None 104773851 Common coaD Phosphopantetheine adenylyltransferase Ldb0767 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 104774539 Nonpathogen - Putative transcriptional regulator (Xre family) Ldb1793 1 COG1396 HipB, Predicted transcriptional regulators Transcription 104773746 Common potD1 Spermidine/putrescine ABC transporter, substratebinding protein Ldb0650 133 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 104773501 Common purR purine operon repressor Ldb0347 85 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 104774147 Common phoH PhoH homologue Ldb1254 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 104773632 Common - hypothetical protein Ldb0509 86 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 104773508 Common pyrG CTP synthetase Ldb0354 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 104774668 Common epsIA EpsIA, Transcriptional regulator of eps operon (LytR family) Ldb2011 62 COG1316 LytR, Transcriptional regulator Transcription 104774261 Common plsX fatty acid/phospholipid synthesis protein Ldb1388 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 104773538 Common rpsL 30S ribosomal protein S12 Ldb0392 243 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 104773637 Nonpathogen - hypothetical protein Ldb0514 1 None None None 104774744 Common pyrB aspartate carbamoyltransferase catalytic subunit Ldb2112 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 104773970 Common - tRNA/rRNA methyltransferase Ldb0930 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 104773979 Common phoR Phosphate regulon sensor histidine kinase Ldb0963 221 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 104773780 Common pgi glucose-6-phosphate isomerase Ldb0692 178 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 104773348 Common - hypothetical protein Ldb0138 8 COG4853 COG4853, Uncharacterized protein conserved in bacteria Function unknown 104773967 Common - Transposase Ldb0919 85 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773298 Nonpathogen - hypothetical protein Ldb0065 1 None None None 104773342 Nonpathogen arbZ Phospho-beta-glycosidase Ldb0128 1 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 104774247 Common rimM 16S rRNA processing protein RimM Ldb1370 172 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 104774655 Nonpathogen - hypothetical protein Ldb1991 1 None None None 104773726 Common - hypothetical protein Ldb0621 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 104774047 Nonpathogen - hypothetical protein Ldb1085 1 None None None 104773487 Common - ABC transporter, permease protein Ldb0330 19 COG1511 COG1511, Predicted membrane protein Function unknown 104774320 Nonpathogen - hypothetical protein Ldb1468 1 None None None 104773673 Common - hypothetical protein Ldb0557 50 COG1295 Rbn, Predicted membrane protein Function unknown 104774319 Nonpathogen - hypothetical protein Ldb1467 1 None None None 104773321 Common - hypothetical protein Ldb0098 10 COG4720 COG4720, Predicted membrane protein Function unknown 104774040 Common carA2a carbamoyl phosphate synthase small subunit Ldb1070 233 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 104773456 Common purA Adenylosuccinate synthetase Ldb0291 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 104773493 Common - Putative dCMP deaminase Ldb0339 86 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 104773622 Nonpathogen - hypothetical protein Ldb0488 1 None None None 104773664 Common pyrP Uracil permease Ldb0545 126 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 104774171 Nonpathogen - hypothetical protein Ldb1284 1 None None None 104773890 Common rpmF 50S ribosomal protein L32 Ldb0822 55 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 104774645 Nonpathogen - hypothetical protein Ldb1980 1 None None None 104774109 Nonpathogen - hypothetical protein Ldb1188 1 None None None 104773300 Common glpF Glycerol uptake facilitator Ldb0067 78 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 104773770 Nonpathogen comGD Putative Competence protein ComGD Ldb0682 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 104774312 Common pepX x-prolyl-dipeptidyl aminopeptidase Ldb1455 15 COG2936 COG2936, Predicted acyl esterases General function prediction only 104773911 Common engA GTP-binding protein EngA Ldb0852 229 COG1160 COG1160, Predicted GTPases General function prediction only 104774532 Common - hypothetical protein Ldb1779 102 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104774782 Common potC2 Spermidine/putrescine ABC transporter, permease protein Ldb2179 171 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 104773916 Nonpathogen - hypothetical protein Ldb0860 1 None None None 104773394 Common malG Maltose ABC transporter, permease component Ldb0195 151 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 104773467 Common - ABC transporter, ATP-binding/permease protein Ldb0302 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104773328 Common luxS S-ribosylhomocysteinase Ldb0105 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 104774585 Nonpathogen - hypothetical protein Ldb1890 1 COG1645 COG1645, Uncharacterized Zn-finger containing protein General function prediction only 104774520 Nonpathogen - hypothetical protein Ldb1753 1 None None None 104773281 Nonpathogen - hypothetical protein Ldb0033 1 None None None 104774451 Nonpathogen - hypothetical protein Ldb1650 1 None None None 104774370 Common pyrE Orotate phosphoribosyltransferase Ldb1532 159 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 104773435 Common - hypothetical protein Ldb0250 7 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 104774554 Common iscU NifU homolog involved in Fe-S cluster formation Ldb1818 69 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 104773972 Nonpathogen - hypothetical protein Ldb0954 1 None None None 104774384 Common dacA D-alanyl-D-alanine carboxypeptidase Ldb1555 153 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 104774741 Common clpL ATP-dependent Clp protease, ATP-binding subunit Ldb2102 218 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 104774561 Nonpathogen - hypothetical protein Ldb1827 1 None None None 104773707 Common - hypothetical protein Ldb0597 94 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 104774359 Nonpathogen - hypothetical protein Ldb1520 1 None None None 104773451 Common oppFII Oligopeptide ABC transporter, ATP-binding protein Ldb0285 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 104773587 Common - Transcriptional regulator (GntR family) Ldb0449 119 COG2188 PhnF, Transcriptional regulators Transcription 104774020 Common carB carbamoyl phosphate synthase large subunit Ldb1024 230 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 104774418 Common yajC Preprotein translocase, YajC subunit Ldb1612 11 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 104774135 Nonpathogen - hypothetical protein Ldb1235 1 None None None 104773447 Common oppA1II Oligopeptide ABC transporter, substrate binding protein Ldb0281 180 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 104774323 Common glnA Glutamine synthetase (Glutamate-ammonia ligase) Ldb1472 226 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 104774719 Common - ABC transporter, permease protein Ldb2070 16 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 104773499 Common ksgA dimethyladenosine transferase Ldb0345 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 104773694 Common - hypothetical protein Ldb0584 121 COG2357 COG2357, Uncharacterized protein conserved in bacteria Function unknown 104774808 Nonpathogen - Hypothetical membrane protein Ldb2207 1 None None None 104774542 Common - Amino acid permease Ldb1796 145 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 104774119 Nonpathogen - hypothetical protein Ldb1205 1 None None None 104774783 Common potA2 Spermidine/putrescine ABC transporter, ATP-binding protein Ldb2180 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 104773314 Common - Putative hydrolase (HAD superfamily) Ldb0089 106 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 104773403 Common phnB Phosphonate ABC transporter, permease protein Ldb0204 86 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 104773596 Nonpathogen - Hypothetical membrane protein Ldb0458 1 None None None 104774628 Common epsIID EpsIID, Putative glycosyltransferase Ldb1950 14 None None None 104774725 Common - hypothetical protein Ldb2081 4 COG5665 NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit Transcription 104773267 Common - Putative signalling protein Ldb0010 75 COG3887 COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain Signal transduction mechanisms 104774304 Common purS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Ldb1442 28 COG1828 PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Nucleotide transport and metabolism 104774267 Nonpathogen - hypothetical protein Ldb1394 1 None None None 104774467 Common - Putative RNA polymerase sigma factor Ldb1677 3 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 104774755 Common - hypothetical protein Ldb2143 3 None None None 104774005 Common dnaD DNA replication protein DnaD Ldb1005 19 COG3935 DnaD, Putative primosome component and related proteins DNA replication, recombination, and repair 104774549 Nonpathogen - hypothetical protein Ldb1804 1 None None None 104773937 Common - hypothetical protein Ldb0883 107 COG2606 EbsC, Uncharacterized conserved protein Function unknown 104774110 Common prtB Proteinase precursor Ldb1189 88 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 104774776 Nonpathogen - hypothetical protein Ldb2168 1 None None None 104774063 Nonpathogen - hypothetical protein Ldb1116 1 None None None 104774685 Common - Putative transposase Ldb2033 65 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773654 Common - Transcriptional regulator (GntR family) Ldb0533 117 COG2188 PhnF, Transcriptional regulators Transcription 104773836 Common pfs Nucleoside phosphorylase Ldb0752 93 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 104773431 Common folB Dihydroneopterin aldolase Ldb0246 84 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 104773765 Common - Substrate binding protein Ldb0675 136 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 104774517 Common aspA aspartate ammonia-lyase Ldb1750 236 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 104773771 Nonpathogen - hypothetical protein Ldb0683 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 104773712 Common - hypothetical protein Ldb0602 133 COG1739 COG1739, Uncharacterized conserved protein Function unknown 104773268 Common rplI 50S ribosomal protein L9 Ldb0011 192 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 104774402 Nonpathogen - hypothetical protein Ldb1595 1 None None None 104773446 Common oppA3II Oligopeptide ABC transporter, substrate binding protein Ldb0276 179 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 104773432 Common folKE 2-Amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase / GTP cyclohydrolase I Ldb0247 211 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 104773788 Common upp Uracil phosphoribosyltransferase Ldb0704 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 104774101 Common - hypothetical protein Ldb1176 25 COG2339 COG2339, Predicted membrane protein Function unknown 104774344 Common nadD Nicotinate-nucleotide adenylyltransferase Ldb1498 190 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 104774123 Nonpathogen - hypothetical protein Ldb1216 1 None None None 104773884 Common recQ ATP-dependent DNA helicase RecQ Ldb0814 237 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 104774465 Common rpmG 50S ribosomal protein L33 Ldb1669 39 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 162139854 Common nusA transcription elongation factor NusA Ldb1335 234 COG0195 NusA, Transcription elongation factor Transcription 104773361 Common - ABC transporter, permease protein Ldb0155 2 COG4587 COG4587, ABC-type uncharacterized transport system, permease component General function prediction only 104774758 Common dltC D-alanine--poly(phosphoribitol) ligase subunit 2 Ldb2146 11 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 104773794 Common atpG F0F1 ATP synthase subunit gamma Ldb0710 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 104774362 Common trxA2 Thioredoxin Ldb1524 137 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 104774747 Common cspA Cold shock protein A Ldb2117 179 COG1278 CspC, Cold shock proteins Transcription 104773781 Common - Putative penicillin binding protein Ldb0697 132 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 104773975 Common pstC Phosphate ABC transporter, permease protein Ldb0957 227 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 104773610 Common - Methyltransferase Ldb0473 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 104774128 Nonpathogen - hypothetical protein Ldb1221 2 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 104774675 Common gmk2 Guanylate kinase Ldb2023 211 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 104774797 Nonpathogen - hypothetical protein Ldb2195 1 None None None 104773867 Nonpathogen - hypothetical protein Ldb0785 1 None None None 104774538 Common galE UDP-glucose 4-epimerase Ldb1792 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 104774148 Common rpsU 30S ribosomal protein S21 Ldb1255 124 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 104773843 Common - Putative pyridine nucleotide-disulphide oxidoreductase Ldb0759 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 104774555 Common sufS Cysteine desulfurase / Selenocysteine lyase Ldb1819 241 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 104773415 Common - K+ uptake permease Ldb0219 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 104774602 Common coaA pantothenate kinase Ldb1912 72 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 104773384 Common - Glycosyltransferase Ldb0178 173 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 104773602 Common pcrA ATP-dependent DNA helicase PcrA Ldb0465 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 104774531 Common - Ornithine decarboxylase Ldb1775 75 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 104774154 Nonpathogen - hypothetical protein Ldb1267 1 None None None 104774205 Nonpathogen - hypothetical protein Ldb1323 1 None None None 104774656 Nonpathogen - hypothetical protein Ldb1993 1 None None None 104773491 Nonpathogen - hypothetical protein Ldb0336 2 None None None 104774764 Common - Transposase Ldb2153 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 104773615 Nonpathogen - hypothetical protein Ldb0481 1 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 104773684 Nonpathogen - hypothetical protein Ldb0568 1 None None None 104773313 Common - Hypothetical membrane protein Ldb0085 37 COG1268 BioY, Uncharacterized conserved protein General function prediction only 104774502 Common pepC Aminopeptidase C Ldb1730 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 104774623 Common epsIIJ EpsIIJ, Hypothetical membrane protein Ldb1942 6 None None None 104774459 Common amtB Ammonia permease Ldb1663 203 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 104774422 Common mutS1 DNA mismatch repair protein Ldb1616 200 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 104774162 Common rnhB Ribonuclease HII Ldb1275 210 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 104774178 Nonpathogen - hypothetical protein Ldb1291 1 None None None 104773551 Common rpsQ 30S ribosomal protein S17 Ldb0405 212 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 104774078 Common - hypothetical protein Ldb1146 2 None None None 104773517 Common mfd Transcription-repair coupling factor Ldb0363 233 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 104773560 Common rpmD 50S ribosomal protein L30 Ldb0414 58 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 104774191 Common - Cation efflux protein (probable metal/H+ antiporter) Ldb1306 197 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 104773522 Common ftsH Cell division protein FtsH Ldb0368 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 104774012 Common - hypothetical protein Ldb1014 11 COG4474 COG4474, Uncharacterized protein conserved in bacteria Function unknown 104774427 Common gcp Putative glycoprotein endopeptidase Ldb1621 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 104773907 Common - hypothetical protein Ldb0848 6 COG3601 COG3601, Predicted membrane protein Function unknown 104774083 Common - hypothetical protein Ldb1153 30 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 104774487 Nonpathogen - hypothetical protein Ldb1705 1 None None None 104774285 Common - Putative RNA methylase Ldb1421 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 104773459 Common - hypothetical protein Ldb0294 6 None None None 104774632 Nonpathogen - hypothetical protein Ldb1956 1 None None None 104774376 Common - Pseudouridylate synthase Ldb1543 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 104774064 Nonpathogen - hypothetical protein Ldb1117 1 None None None 104774409 Common mutS2 DNA mismatch repair protein MutS2 Ldb1603 206 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 104774471 Common - hypothetical protein Ldb1681 16 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 104773529 Common - Hypothetical membrane protein Ldb0375 102 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 104773488 Common - ABC transporter, ATP-binding protein Ldb0331 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 104774496 Common - ABC transporter, ATP-binding protein Ldb1714 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 104774572 Common - Putative glycosyltransferase Ldb1838 215 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 104774560 Nonpathogen - hypothetical protein Ldb1824 1 None None None 104774167 Common cca tRNA CCA-pyrophosphorylase Ldb1280 214 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 104774480 Nonpathogen - hypothetical protein Ldb1693 1 None None None 104774052 Nonpathogen - hypothetical protein Ldb1090 1 None None None 104773535 Common rpoB DNA-directed RNA polymerase subunit beta Ldb0386 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 104773709 Common recA recombinase A Ldb0599 221 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 104773450 Common oppDII Oligopeptide ABC transporter, ATP-binding protein Ldb0284 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 104773762 Common - Amino-acid transporter Ldb0672 54 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 104773545 Common rplB 50S ribosomal protein L2 Ldb0399 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 104774199 Common grpE Chaperone protein GrpE (heat shock protein) Ldb1314 227 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 104774639 Common msrB methionine sulfoxide reductase B Ldb1971 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 104774433 Common - Putative methyltransferase Ldb1627 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 104773925 Common - hypothetical protein Ldb0871 42 None None None 104773279 Common - ABC transporter, ATP-binding/permease protein Ldb0031 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774334 Common - Putative transcriptional regulator (MarR family) Ldb1488 100 COG1733 COG1733, Predicted transcriptional regulators Transcription 104773951 Common fabD Malonyl-CoA-[acyl-carrier-protein] transacylase Ldb0902 208 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 104774598 Nonpathogen - hypothetical protein Ldb1908 1 None None None 104774026 Common - Putative fructose-2,6-bisphosphatase Ldb1036 155 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 104774059 Common - Putative acetyltransferase Ldb1106 112 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 104774181 Common eno phosphopyruvate hydratase Ldb1294 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 104773759 Nonpathogen - Hypothetical membrane protein Ldb0669 1 None None None 104773465 Common - hypothetical protein Ldb0300 14 COG1598 COG1598, Uncharacterized conserved protein Function unknown 104774137 Nonpathogen - hypothetical protein Ldb1242 1 None None None 104774024 Nonpathogen - hypothetical protein Ldb1030 2 None None None 104774325 Common - hypothetical protein Ldb1477 15 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 104774774 Common - hypothetical protein Ldb2164 3 None None None 104774753 Common - Transcriptional regulator (TetR family) Ldb2141 33 COG1309 AcrR, Transcriptional regulator Transcription 104774614 Common gtcA Teichoic acid glycosylation protein Ldb1931 10 COG2246 COG2246, Predicted membrane protein Function unknown 104774525 Common - Putative acetyltransferase Ldb1765 17 COG0456 RimI, Acetyltransferases General function prediction only 104774272 Nonpathogen - hypothetical protein Ldb1405 1 None None None 104774037 Common hsdS2 Type I restriction-modification system, specificity subunit Ldb1055 86 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 104774801 Common - Glutamine ABC transporter, ATP-binding protein Ldb2199 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 104773339 Common - Hypothetical membrane protein Ldb0123 12 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104774224 Common rpsB 30S ribosomal protein S2 Ldb1345 248 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 104773357 Common - ABC transporter, ATP-binding protein Ldb0151 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 104773585 Nonpathogen - hypothetical protein Ldb0447 1 None None None 104774441 Common dnaX DNA polymerase III, gamma/tau subunit Ldb1635 249 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 104773858 Common - Putative hydrolase (metallo-beta-lactamase superfamily) Ldb0774 155 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 104774269 Nonpathogen - hypothetical protein Ldb1396 4 COG4127 COG4127, Uncharacterized conserved protein Function unknown 104773537 Nonpathogen - Hypothetical membrane protein Ldb0388 1 None None None 104773306 Common - Putative fructose-2,6-bisphosphatase Ldb0076 109 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 104773595 Nonpathogen - Hypothetical membrane protein Ldb0457 1 None None None 104773695 Common ppnK inorganic polyphosphate/ATP-NAD kinase Ldb0585 238 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 104774643 Nonpathogen - hypothetical protein Ldb1978 1 None None None 104773330 Common - ABC transporter, ATP-binding/permease protein Ldb0111 231 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774164 Common - hypothetical protein Ldb1277 11 COG4479 COG4479, Uncharacterized protein conserved in bacteria Function unknown 104774683 Nonpathogen - hypothetical protein Ldb2031 1 None None None 104774621 Common epsIIM EpsIIM, Hypothetical protein Ldb1938 15 COG3475 COG3475, LPS biosynthesis protein Cell envelope biogenesis, outer membrane 104773918 Nonpathogen - hypothetical protein Ldb0862 1 None None None 104774306 Common purB adenylosuccinate lyase Ldb1444 239 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 104773657 Common - hypothetical protein Ldb0537 217 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 104773322 Common - hypothetical protein Ldb0099 128 COG2096 COG2096, Uncharacterized conserved protein Function unknown 104774761 Nonpathogen - hypothetical protein Ldb2149 1 None None None 104773822 Common ftsI Cell division protein FtsI Ldb0738 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 104773336 Common glcK Glucokinase Ldb0119 140 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 104774170 Nonpathogen - hypothetical protein Ldb1283 1 None None None 104774500 Common dut dUTP diphosphatase Ldb1728 103 COG0756 Dut, dUTPase Nucleotide transport and metabolism 104773406 Nonpathogen - hypothetical protein Ldb0207 1 None None None 104773607 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B Ldb0470 211 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 104774781 Common potB2 Spermidine/putrescine ABC transporter, permease protein Ldb2178 194 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 104774728 Common fumC fumarate hydratase Ldb2086 234 COG0114 FumC, Fumarase Energy production and conversion 104773424 Common gpmA1 Phosphoglycerate mutase Ldb0230 158 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 104774004 Common asnC asparaginyl-tRNA synthetase Ldb1004 249 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 104774382 Common - hypothetical protein Ldb1553 7 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 104773290 Common - 4-oxalocrotonate tautomerase Ldb0052 20 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 104773993 Common parE DNA topoisomerase IV subunit B Ldb0993 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 104774786 Common - Putative lipoprotein Ldb2183 97 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 104773288 Common - Hypothetical membrane protein Ldb0047 2 None None None 104773270 Common - hypothetical protein Ldb0013 5 None None None 104773946 Nonpathogen - hypothetical protein Ldb0893 1 None None None 104773629 Nonpathogen - hypothetical protein Ldb0506 1 None None None 104773295 Common - hypothetical protein Ldb0062 31 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 104773344 Nonpathogen - hypothetical protein Ldb0133 2 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 104773440 Nonpathogen - hypothetical protein Ldb0255 1 None None None 104773960 Common birA Biotin-[acetyl-CoA-carboxylase] ligase Ldb0911 148 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 104773700 Common - hypothetical protein Ldb0590 196 COG0628 PerM, Predicted permease General function prediction only 104774117 Common lacS Lactose permease Ldb1202 98 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 104773482 Common - Putative hydrolase (NUDIX family) Ldb0325 57 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 104773711 Common rgpG Putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase Ldb0601 228 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 104773391 Common ddl D-alanine--D-alanine ligase Ldb0185 210 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 104773475 Common - Putative transcriptional regulator (MarR family) Ldb0314 31 COG1846 MarR, Transcriptional regulators Transcription 104773644 Common glnH2 Glutamine ABC transporter, glutamine-binding protein Ldb0521 175 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 104774415 Common - Phosphoesterase (DHH family) Ldb1609 88 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 104774211 Common infB translation initiation factor IF-2 Ldb1332 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 104774030 Nonpathogen - hypothetical protein Ldb1045 1 None None None 104773666 Common - Ornithine decarboxylase Ldb0547 82 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 104774142 Common glyQ glycyl-tRNA synthetase subunit alpha Ldb1249 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 104773385 Common - hypothetical protein Ldb0179 75 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 104774594 Common - 2,5-didehydrogluconate reductase Ldb1901 163 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 104774314 Common cysK1 Cysteine synthase Ldb1458 223 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 104774015 Nonpathogen - hypothetical protein Ldb1019 1 None None None 104773261 Common recF recombination protein F Ldb0004 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 104774651 Common - Putative transposase Ldb1987 11 COG5421 COG5421, Transposase DNA replication, recombination, and repair 104773405 Common - Peptide binding protein Ldb0206 188 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 104773803 Nonpathogen - hypothetical protein Ldb0719 1 None None None 104774342 Common - hypothetical protein Ldb1496 199 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 104773940 Common dtd D-tyrosyl-tRNA deacylase Ldb0886 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 104773533 Nonpathogen - hypothetical protein Ldb0384 1 None None None 104773743 Common potA1 Spermidine/putrescine ABC transporter, ATP-binding protein Ldb0647 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 104774537 Common - Putative helicase Ldb1791 152 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 104773505 Common - Phosphohydrolase (HD superfamily) Ldb0351 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 104774263 Common - Putative kinase Ldb1390 50 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 104773849 Common - hypothetical protein Ldb0765 10 COG4471 COG4471, Uncharacterized protein conserved in bacteria Function unknown 104774661 Common epsIH EpsIH, Putative glycosyltransferase Ldb2004 14 None None None 104773368 Common - Putative permease Ldb0162 43 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 104774704 Common parB2 Chromosome partitioning protein ParB Ldb2055 186 COG1475 Spo0J, Predicted transcriptional regulators Transcription 104773413 Common - hypothetical protein Ldb0217 8 COG4545 COG4545, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 104773506 Nonpathogen - hypothetical protein Ldb0352 1 COG4506 COG4506, Uncharacterized protein conserved in bacteria Function unknown 104773724 Common - hypothetical protein Ldb0616 2 COG3247 HdeD, Uncharacterized conserved protein Function unknown 104774356 Common coaE Dephospho-CoA kinase Ldb1510 210 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 104773733 Common gap Glyceraldehyde 3-phosphate dehydrogenase Ldb0635 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 104773604 Common - hypothetical protein Ldb0467 9 COG4851 CamS, Protein involved in sex pheromone biosynthesis General function prediction only 104774737 Common - hypothetical protein Ldb2095 10 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 104773453 Common pepW Aminopeptidase W Ldb0288 16 COG3579 PepC, Aminopeptidase C Amino acid transport and metabolism 104773374 Common - Amino Acid ABC transporter, ATP-binding protein Ldb0168 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 104773319 Common rtpR Ribonucleoside-triphosphate reductase Ldb0096 42 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 104774389 Common leuS leucyl-tRNA synthetase Ldb1570 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104774234 Common - hypothetical protein Ldb1355 14 COG4224 COG4224, Uncharacterized protein conserved in bacteria Function unknown 104773628 Common - ABC transporter, ATP-binding protein Ldb0503 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 104774331 Common greA1 Transcription elongation factor GreA Ldb1485 204 COG0782 GreA, Transcription elongation factor Transcription 104774090 Common - Putative exonuclease Ldb1162 107 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 104773984 Common - ABC transporter, ATP-binding protein Ldb0974 245 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 104774126 Common - hypothetical protein Ldb1219 32 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 104773640 Common glnQ Glutamine ABC transporter, ATP-binding protein Ldb0517 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 104773377 Common - hypothetical protein Ldb0171 76 COG3189 COG3189, Uncharacterized conserved protein Function unknown 104773821 Nonpathogen ftsL Cell division protein FtsL Ldb0737 2 COG4839 FtsL, Protein required for the initiation of cell division Cell division and chromosome partitioning 104774569 Common - Putative phosphoglycerol transferase Ldb1835 47 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 104773869 Common folA Dihydrofolate reductase Ldb0788 147 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 104773783 Common murE2 Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase Ldb0699 60 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 104773810 Common rsuA Pseudouridylate synthase Ldb0726 195 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 104774557 Common sufC ATP-binding protein involved in Fe/S cluster assembly Ldb1821 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 104774165 Common - hypothetical protein Ldb1278 50 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 104774698 Common - ABC transporter, ATP-binding/permease protein Ldb2047 247 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774604 Common - hypothetical protein Ldb1914 7 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 104774749 Common - Putative glutamine amidotransferase Ldb2120 122 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 104773518 Common - Putative ribosome-associated heat shock protein Ldb0364 41 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 104773722 Common uvrB excinuclease ABC subunit B Ldb0614 230 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 104774456 Common rplJ 50S ribosomal protein L10 Ldb1658 208 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 104773655 Common - putative phosphoketolase Ldb0534 65 COG3957 COG3957, Phosphoketolase Carbohydrate transport and metabolism 104773600 Common - hypothetical protein Ldb0463 6 COG4684 COG4684, Predicted membrane protein Function unknown 104773757 Common - hypothetical protein Ldb0667 154 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 104773819 Common mraZ hypothetical protein Ldb0735 141 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 104774790 Nonpathogen - hypothetical protein Ldb2187 1 None None None 104773581 Nonpathogen - hypothetical protein Ldb0440 1 None None None 104774103 Common - Glycine betaine ABC transporter, substrate binding / permease protein Ldb1180 183 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 104774515 Common - hypothetical protein Ldb1745 3 COG1737 RpiR, Transcriptional regulators Transcription 104773882 Common - hypothetical protein Ldb0812 5 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 104774400 Common ccpA Catabolite control protein A (CcpA) Ldb1593 125 COG1609 PurR, Transcriptional regulators Transcription 104774149 Common - hypothetical protein Ldb1256 112 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 104773448 Common oppBII Oligopeptide ABC transporter, permease protein Ldb0282 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 104774518 Common - hypothetical protein Ldb1751 2 None None None 104774818 Common rnpA ribonuclease P Ldb2217 52 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 104774694 Common racD Aspartate racemase Ldb2043 66 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 104773948 Common - hypothetical protein Ldb0899 158 COG0628 PerM, Predicted permease General function prediction only 104774121 Nonpathogen - hypothetical protein Ldb1214 1 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 104774326 Common - hypothetical protein Ldb1478 8 COG4483 COG4483, Uncharacterized protein conserved in bacteria Function unknown 104773855 Common holA DNA polymerase III, delta subunit Ldb0771 35 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 104774346 Common rplT 50S ribosomal protein L20 Ldb1500 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 104773830 Common - hypothetical protein Ldb0746 7 None None None 104773977 Common pstB Phosphate ABC transporter, ATP-binding protein Ldb0959 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 104773427 Common - hypothetical protein Ldb0233 12 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 104773312 Nonpathogen - hypothetical protein Ldb0084 1 None None None 104774042 Common - Putative transcriptional regulator of multidrug efflux pump gene (MerR family) Ldb1075 57 COG0789 SoxR, Predicted transcriptional regulators Transcription 104774391 Common - Permease Ldb1574 227 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 104774701 Common - hypothetical protein Ldb2052 27 COG4481 COG4481, Uncharacterized protein conserved in bacteria Function unknown 104774605 Common - Hypothetical membrane protein Ldb1915 3 None None None 104774566 Common smpB SsrA-binding protein Ldb1832 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 104774049 Nonpathogen - hypothetical protein Ldb1087 1 None None None 104773714 Common - Ribosomal protein S30EA Ldb0606 173 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 104774443 Common - Putative methyltransferase Ldb1637 75 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 104774438 Nonpathogen - hypothetical protein Ldb1632 2 None None None 104773543 Common rplD 50S ribosomal protein L4 Ldb0397 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 104773982 Common - hypothetical protein Ldb0969 46 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 104773760 Common - Phosphotyrosine protein phosphatase Ldb0670 131 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 104774341 Common - hypothetical protein Ldb1495 25 COG1323 COG1323, Predicted nucleotidyltransferase General function prediction only 104773613 Nonpathogen - hypothetical protein Ldb0476 1 None None None 104774071 Nonpathogen - hypothetical protein Ldb1124 1 None None None 104773954 Common accB Acetyl-CoA carboxylase, biotin carboxyl carrier protein Ldb0905 179 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 104773605 Common gatC Glutamyl-tRNA(Gln) amidotransferase subunit C Ldb0468 134 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 104774207 Common cysK2 Cysteine synthase Ldb1325 223 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 104774498 Common - Glycosyltransferase Ldb1726 33 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 104774058 Common ppiB peptidyl-prolyl cis-trans isomerase (rotamase),cyclophilin type Ldb1104 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 104774625 Common epsIIH EpsIIH, Putative glycosyltransferase Ldb1944 208 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 104774193 Common apt adenine phosphoribosyltransferase Ldb1308 172 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 104774014 Common - Putative DNA methylase Ldb1016 133 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 104774031 Common - hypothetical protein Ldb1046 52 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 104774176 Common - ABC transporter, ATP-binding / permease protein Ldb1289 235 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104774570 Common - hypothetical protein Ldb1836 36 COG0392 COG0392, Predicted integral membrane protein Function unknown 104773559 Common rpsE 30S ribosomal protein S5 Ldb0413 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 104773913 Common - hypothetical protein Ldb0854 30 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 104774612 Nonpathogen - hypothetical protein Ldb1928 1 None None None 104774658 Common epsIK EpsIK, Putative polysaccharide repeat unit transport protein Ldb2001 75 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 104774649 Common - hypothetical protein Ldb1985 13 None None None 104774085 Common - Putative acetyltransferase Ldb1157 7 COG2388 COG2388, Predicted acetyltransferase General function prediction only 104774431 Common - hypothetical protein Ldb1625 7 None None None 104774226 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase Ldb1347 96 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 104774420 Common ruvA Holliday junction DNA helicase RuvA Ldb1614 210 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 104774425 Common - redox-sensing transcriptional repressor Rex Ldb1619 56 COG2344 COG2344, AT-rich DNA-binding protein General function prediction only 104773686 Common clpE ATP-dependent Clp protease, ATP-binding subunit ClpE Ldb0574 217 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 104774160 Common topA DNA topoisomerase I Ldb1273 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 104774216 Common polC DNA polymerase III, alpha subunit (gram-positive type) (PolC) Ldb1337 217 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 104774291 Common - hypothetical protein Ldb1427 34 COG1302 COG1302, Uncharacterized protein conserved in bacteria Function unknown 104773476 Common ansA Asparaginase Ldb0315 147 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 104773905 Common scpB Putative segregation and condensation protein B Ldb0846 151 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 104773618 Common - hypothetical protein Ldb0484 15 COG4912 COG4912, Predicted DNA alkylation repair enzyme DNA replication, recombination, and repair 104773942 Common hisS histidyl-tRNA synthetase Ldb0888 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104774641 Common - hypothetical protein Ldb1976 6 None None None 104773408 Common asnB1 Asparagine synthase Ldb0209 166 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 104774558 Common - Putative acetyltransferase Ldb1822 96 COG2153 ElaA, Predicted acyltransferase General function prediction only 104774308 Common purE Phosphoribosylaminoimidazole carboxylase, catalytic subunit Ldb1446 233 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 104773332 Common - Transcriptional regulator (LysR family) Ldb0115 174 COG0583 LysR, Transcriptional regulator Transcription 104774506 Common gpmA2 Phosphoglycerate mutase Ldb1734 159 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 104774681 Common - hypothetical protein Ldb2029 27 COG2966 COG2966, Uncharacterized conserved protein Function unknown 104774374 Common - hypothetical protein Ldb1541 17 COG3679 COG3679, Uncharacterized conserved protein Function unknown 104773915 Common - Transcriptional regulator (LysR family) Ldb0856 65 COG0583 LysR, Transcriptional regulator Transcription 104773678 Common recX recombination regulator RecX Ldb0562 48 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 104773697 Common upk undecaprenyl pyrophosphate phosphatase Ldb0587 201 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 104773688 Common ptsH Phosphocarrier protein HPr Ldb0576 147 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 104773376 Common mpg 3-methyladenine DNA glycosylase Ldb0170 77 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 104773797 Common - hypothetical protein Ldb0713 5 COG4836 COG4836, Predicted membrane protein Function unknown 104773324 Common ldhA D-lactate dehydrogenase Ldb0101 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 104774545 Common - PTS system, mannose-specific enzyme IID component Ldb1799 41 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 104774275 Common - Putative GTP-binding protein Ldb1408 163 COG1162 COG1162, Predicted GTPases General function prediction only 104773272 Nonpathogen - hypothetical protein Ldb0015 1 None None None 104774730 Nonpathogen - hypothetical protein Ldb2088 1 None None None 104774328 Common rpmG 50S ribosomal protein L33 Ldb1482 63 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 104773317 Common - L-2-hydroxyisocaproate dehydrogenase Ldb0094 147 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 104774369 Common pyrF Orotidine-5'-phosphate decarboxylase Ldb1531 157 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 104774787 Common - ABC transporter, ATP-binding protein Ldb2184 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 104774803 Common - Putative chloride channel protein Ldb2201 152 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 104773310 Nonpathogen - Hypothetical membrane protein Ldb0080 1 None None None 104773650 Common rbsK Ribokinase Ldb0529 194 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 104774131 Common mod Type III restriction-modification system methyltransferase Ldb1230 94 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 104773647 Nonpathogen - hypothetical protein Ldb0526 1 None None None 104773463 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein Ldb0298 240 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 104773286 Common - hypothetical protein Ldb0043 8 COG4720 COG4720, Predicted membrane protein Function unknown 104774712 Common pepD2 Dipeptidase Ldb2063 25 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 104774564 Nonpathogen - Hypothetical membrane protein Ldb1830 1 None None None 104774242 Common - Putative secreted 5'-nucleotidase Ldb1363 113 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 104773752 Common - Cation transporting P-type ATPase (probable copper transporter) Ldb0660 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 104774256 Common oppC Oligopeptide ABC transporter, permease protein Ldb1383 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 104774360 Common murC UDP-N-acetylmuramate--L-alanine ligase Ldb1522 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 104774499 Common sms DNA repair protein RadA Ldb1727 215 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 104773642 Common glnM Glutamine ABC transporter, permease protein Ldb0519 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 104774001 Common addA ATP-dependent deoxyribonuclease subunit A Ldb1001 229 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 104773934 Common mvaA Hydroxymethylglutaryl-CoA reductase Ldb0880 62 COG1257 HMG1, Hydroxymethylglutaryl-CoA reductase Lipid metabolism 104773570 Common cbiO1 Putative cobalt ABC transporter, ATP-binding protein Ldb0424 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 104774759 Common dltB D-alanyl transfer protein DltB Ldb2147 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 104774576 Common - Putative anti-sigma factor Ldb1880 7 None None None 104774283 Nonpathogen - hypothetical protein Ldb1416 1 None None None 104773355 Nonpathogen - Hypothetical membrane protein Ldb0145 1 None None None 104774492 Common - hypothetical protein Ldb1710 13 COG4720 COG4720, Predicted membrane protein Function unknown 104773574 Common rplM 50S ribosomal protein L13 Ldb0428 223 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 104773583 Common - hypothetical protein Ldb0442 15 COG3641 PfoR, Predicted membrane protein, putative toxin regulator General function prediction only 104774270 Nonpathogen - hypothetical protein Ldb1403 1 None None None 104773690 Common spx Conserved hypothetical protein (ArsC family) Ldb0578 20 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 104773593 Common nadE NAD synthetase Ldb0455 146 COG0171 NadE, NAD synthase Coenzyme metabolism 104774115 Common asnC asparaginyl-tRNA synthetase Ldb1195 249 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 104774721 Common - hypothetical protein Ldb2075 87 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 104773856 Common rpsT 30S ribosomal protein S20 Ldb0772 165 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 104773895 Nonpathogen - hypothetical protein Ldb0834 1 None None None 104773503 Nonpathogen - hypothetical protein Ldb0349 1 None None None 104773366 Common htpX1 heat shock protein HtpX Ldb0160 189 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 104774232 Common - ABC transporter, ATP-binding/permease protein Ldb1353 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 104773352 Nonpathogen - hypothetical protein Ldb0142 1 None None None 104773790 Common atpE H+ transporting ATPase / ATP synthase, C subunit Ldb0706 12 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 104773531 Common - hypothetical protein Ldb0382 79 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 104773828 Common ftsZ cell division protein FtsZ Ldb0744 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 104773749 Common - Hydrolase (HAD superfamily) Ldb0655 121 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 104774663 Common epsIF EpsIF, Hypothetical protein Ldb2006 18 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 104774535 Common - Putative oxalate:formate antiporter Ldb1787 143 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 104774239 Common - Putative helicase Ldb1360 193 COG1201 Lhr, Lhr-like helicases General function prediction only 104773778 Common - Putative phosphoglycerol transferase Ldb0690 51 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 104773731 Common - ABC transporter, ATP-binding protein Ldb0632 249 COG1101 PhnK, ABC-type uncharacterized transport system, ATPase component General function prediction only 104773805 Common - hypothetical protein Ldb0721 2 COG5506 COG5506, Uncharacterized conserved protein Function unknown 104774630 Common epsIIB EpsIIB, Putative glycosyltransferase Ldb1952 4 None None None 104774027 Common - hypothetical protein Ldb1039 9 COG0778 NfnB, Nitroreductase Energy production and conversion 104773838 Common - hypothetical protein Ldb0754 7 None None None 104774218 Common - Putative metalloprotease Ldb1339 206 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 104774387 Nonpathogen - hypothetical protein Ldb1562 1 None None None 104774706 Nonpathogen - hypothetical protein Ldb2057 1 None None None 104774249 Common ffh Signal recognition particle protein Ffh Ldb1372 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 104774637 Nonpathogen - hypothetical protein Ldb1967 1 None None None 104773702 Common - hypothetical protein Ldb0592 2 COG4835 COG4835, Uncharacterized protein conserved in bacteria Function unknown 104774582 Common - Putative transcriptional regulator (Xre family) Ldb1886 6 None None None 104774354 Common dnaB Chromosome replication initiation/membrane attachment protein DnaB Ldb1508 15 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 104774180 Common - hypothetical protein Ldb1293 35 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 104773455 Common greA transcription elongation factor GreA Ldb0290 202 COG0782 GreA, Transcription elongation factor Transcription 104774008 Common - D-isomer specific 2-hydroxyacid dehydrogenase Ldb1010 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 104774811 Common - Hypothetical membrane protein Ldb2210 3 None None None 104774481 Nonpathogen - hypothetical protein Ldb1694 1 None None None 104773634 Common pepD1 Dipeptidase Ldb0511 22 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 104774017 Common lsp Signal peptidase II Ldb1021 70 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 104774696 Common - Two-component system, sensor histidine kinase Ldb2045 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 104773293 Common pmi Mannose-6-phosphate isomerase Ldb0059 52 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 104774768 Common - Cation transporting P-type ATPase (probable metal transporter) Ldb2158 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 104773738 Common ung uracil-DNA glycosylase Ldb0642 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 104774731 Nonpathogen - hypothetical protein Ldb2089 1 None None None 104773511 Common murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase Ldb0357 212 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 104774413 Common alaS Alanyl-tRNA synthetase Ldb1607 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 104773387 Nonpathogen - Putative transcriptional regulator (TetR family) Ldb0181 1 COG1309 AcrR, Transcriptional regulator Transcription 104774099 Nonpathogen - hypothetical protein Ldb1174 1 None None None 104773741 Common - Putative exonuclease Ldb0645 146 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 104773438 Common - Amino acid ABC transporter, ATP-binding protein Ldb0253 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 104773969 Nonpathogen - hypothetical protein Ldb0921 2 None None None 104773304 Common - hypothetical protein Ldb0074 66 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 104773847 Common typA GTP-binding protein TypA Ldb0763 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 104773556 Common rpsH 30S ribosomal protein S8 Ldb0410 249 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 104774316 Common add adenosine deaminase Ldb1463 111 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 104774113 Common - hypothetical protein Ldb1193 163 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 104773806 Common rpsD 30S ribosomal protein S4 Ldb0722 248 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 104774673 Common - D-isomer specific 2-hydroxyacid dehydrogenase Ldb2021 228 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 104773668 Nonpathogen - Hypothetical membrane protein Ldb0552 1 None None None 104774144 Common era GTP-binding protein Era Ldb1251 245 COG1159 Era, GTPase General function prediction only 104773962 Nonpathogen - hypothetical protein Ldb0914 1 None None None