Rhizobium etli CFN 42 plasmid p42f, complete sequence NC_007766 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 86360738 Common katG catalase protein RHE_PF00004 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 86361238 Common fixL two-component sensor histidine kinase protein RHE_PF00509 193 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 86361260 Common - hypothetical protein RHE_PF00531 10 None None None 86360806 Common - putative two-component response regulator protein RHE_PF00073 28 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 86361121 Common - probable proline racemase protein RHE_PF00391 47 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 86360832 Common - probable carbohydrate kinase protein, PfkB family RHE_PF00099 169 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 86360780 Common cscR sucrose operon repressor, transcriptional regulator protein, LacI family RHE_PF00046 123 COG1609 PurR, Transcriptional regulators Transcription 86360763 Common - hypothetical protein RHE_PF00029 27 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 86361047 Common - probable sugar ABC transporter, permease protein RHE_PF00317 145 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86360865 Common - putative nucleoside-diphosphate-sugar epimerase protein RHE_PF00134 141 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 86360786 Common - probable RNA polymerase sigma-E factor protein (sigma-24), ECF family RHE_PF00052 152 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 86361096 Common - putative malate dehydrogenase protein RHE_PF00366 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 86361294 Common - putative sugar ABC transporter, permease protein RHE_PF00566 157 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86360820 Common - probable transcriptional regulator protein, LacI family RHE_PF00087 122 COG1609 PurR, Transcriptional regulators Transcription 86361135 Common etfBf electron transport flavoprotein, beta subunit RHE_PF00405 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 86361170 Common raiI autoinducer synthesis protein RHE_PF00440 25 COG3916 LasI, N-acyl-L-homoserine lactone synthetase Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 86361301 Common repCf1 plasmid replication protein RepCf1 RHE_PF00573 18 None None None 86361131 Common - probable S-formylglutathione hydrolase protein RHE_PF00401 95 COG0627 COG0627, Predicted esterase General function prediction only 86361180 Common - putative kinase/esterase protein RHE_PF00450 188 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 86360916 Common - probable amino acid ABC transporter, permease protein RHE_PF00185 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86361037 Common - probable amino acid ABC transporter, substrate-binding protein RHE_PF00307 63 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 86361288 Common - probable transcriptional regulator protein, MerR family RHE_PF00560 110 COG0789 SoxR, Predicted transcriptional regulators Transcription 86361100 Common - hypothetical protein RHE_PF00370 10 COG2140 COG2140, Thermophilic glucose-6-phosphate isomerase and related metalloenzymes Carbohydrate transport and metabolism / General function prediction only 86360740 Nonpathogen - hypothetical protein RHE_PF00006 1 None None None 86360960 Common - putative isomerase protein RHE_PF00230 120 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 86361222 Nonpathogen - hypothetical protein RHE_PF00493 2 None None None 86361151 Common - putative amicyanin protein RHE_PF00421 11 COG3794 PetE, Plastocyanin Energy production and conversion 86360996 Nonpathogen - hypothetical protein RHE_PF00266 3 None None None 86360753 Common mdeAf methionine gamma-lyase RHE_PF00019 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 86361107 Common - probable sugar ABC transporter, ATP-binding protein RHE_PF00377 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86360904 Common flgL flagellar hook-associated protein FlgL RHE_PF00173 30 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 86360971 Common dppCf dipeptide ABC transporter, permease protein RHE_PF00241 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 86360875 Common - probable 3-oxoacyl-[acyl-carrier-protein] reductase protein RHE_PF00144 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 86361051 Common - putative sugar ABC transporter, substrate-binding protein RHE_PF00321 88 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360969 Common dppAf dipeptide ABC transporter, substrate-binding protein RHE_PF00239 193 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 86361223 Nonpathogen - hypothetical protein RHE_PF00494 1 None None None 86361166 Common dadA D-amino acid dehydrogenase small subunit RHE_PF00436 132 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86360953 Common nwsB two-component response regulator protein (nodW mutant supressor protein) RHE_PF00223 220 COG4566 TtrR, Response regulator Signal transduction mechanisms 86360942 Common thuR trehalosemaltose transcriptional regulator protein, LacI family RHE_PF00211 126 COG1609 PurR, Transcriptional regulators Transcription 86361128 Common dapAf3 dihydrodipicolinate synthase protein RHE_PF00398 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 86361010 Common - hypothetical protein RHE_PF00280 12 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 86361081 Common - probable oligopeptide ABC transporter, substrate-binding protein RHE_PF00351 185 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 86361185 Common vbsP phosphopantetheinyl transferase protein RHE_PF00455 43 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 86361291 Common - putative transcriptional regulator protein RHE_PF00563 73 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 86361229 Nonpathogen fixSf membrane protein precursor RHE_PF00500 2 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 86361027 Common - probable sugar ABC transporter, substrate-binding protein RHE_PF00297 39 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86361110 Common - probable transcriptional regulator protein, GntR family RHE_PF00380 126 COG2186 FadR, Transcriptional regulators Transcription 86361063 Nonpathogen - hypothetical protein RHE_PF00333 1 None None None 86361245 Common norB nitric oxide reductase protein RHE_PF00516 121 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 86361219 Common hemAf 5-aminolevulinate synthase RHE_PF00489 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 86361007 Common - putative alpha amylase protein RHE_PF00277 108 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 86361200 Common - hypothetical protein RHE_PF00470 81 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 86361030 Common mocBf rhizopine ABC transporter, substrate-binding protein RHE_PF00300 91 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360986 Common - probable transcriptional regulator protein, LacI family RHE_PF00256 126 COG1609 PurR, Transcriptional regulators Transcription 86360853 Nonpathogen - putative two-component response regulator protein RHE_PF00120 1 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 86361115 Common putR proline dehydrogenase protein RHE_PF00385 161 COG1522 Lrp, Transcriptional regulators Transcription 86360811 Common - putative two-component response regulator protein RHE_PF00078 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 86360814 Common - hypothetical protein RHE_PF00081 4 None None None 86360775 Common - hypothetical protein RHE_PF00041 48 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 86360936 Common thuBf myo-inositol 2-dehydrogenase protein RHE_PF00205 170 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 86360952 Common - probable two-component sensor histidine kinase protein RHE_PF00222 216 COG3447 COG3447, Predicted integral membrane sensor domain Signal transduction mechanisms 86361175 Nonpathogen - hypothetical protein RHE_PF00445 6 None None None 86361248 Common hemNf coproporphyrinogen III oxidase RHE_PF00519 202 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 86360889 Common - hypothetical protein RHE_PF00158 19 COG3443 COG3443, Predicted periplasmic or secreted protein General function prediction only 86360921 Common - probable amino acid ABC transporter, ATP-binding protein RHE_PF00190 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 86360894 Common - probable transcriptional regulator protein RHE_PF00163 130 COG1802 GntR, Transcriptional regulators Transcription 86360849 Common - putative transcriptional regulator protein RHE_PF00116 71 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 86360988 Common - hypothetical protein RHE_PF00258 3 None None None 86361204 Common - probable transcriptional regulator protein, TetR family RHE_PF00474 11 COG1309 AcrR, Transcriptional regulator Transcription 86360788 Nonpathogen - hypothetical protein RHE_PF00054 1 None None None 86361156 Common - hypothetical protein RHE_PF00426 3 None None None 86361094 Common gabDf2 succinate-semialdehyde dehydrogenase protein RHE_PF00364 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86361262 Common - probable two-component response regulator protein RHE_PF00533 94 COG4566 TtrR, Response regulator Signal transduction mechanisms 86361053 Common - putative phosphoglycerate mutase protein RHE_PF00323 131 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 86360948 Common - probable D-ribose ABC transporter, substrate-binding protein RHE_PF00217 87 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360834 Common - putative aminotransferase protein RHE_PF00101 7 None None None 86360750 Common - hypothetical protein RHE_PF00016 25 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 86361123 Common - probable glycine betaine/L-proline ABC transporter, permease protein RHE_PF00393 148 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 86360803 Common - probable C4-dicarboxylate ABC transporter, permease protein RHE_PF00070 134 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 86360765 Common - probable dihydroxyacetone kinase, kinase domain protein RHE_PF00031 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 86360980 Common mcpZf1 methyl-accepting chemotaxis protein RHE_PF00250 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 86361083 Common - probable oligopeptide ABC transporter, permease protein RHE_PF00353 216 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 86361159 Common - probable transcriptional regulator protein RHE_PF00429 21 COG1802 GntR, Transcriptional regulators Transcription 86360950 Common - hypothetical protein RHE_PF00220 11 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 86360998 Common - putative hydrolase protein RHE_PF00268 146 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 86360877 Common - putative transcriptional regulator protein, GntR family RHE_PF00146 29 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86360822 Common - probable oxidoreductase protein RHE_PF00089 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 86361296 Common - probable transcriptional regulator protein RHE_PF00568 83 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 86360914 Common - putative arylmalonate decarboxylase protein RHE_PF00183 44 COG3473 COG3473, Maleate cis-trans isomerase Secondary metabolites biosynthesis, transport, and catabolism 86361105 Common - probable sugar ABC transporter, permease protein RHE_PF00375 155 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86360892 Common - probable amino acid ABC transporter, permease protein RHE_PF00161 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86360973 Common dppFf dipeptide ABC transporter, ATP-binding protein RHE_PF00243 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 86361278 Common - hypothetical protein RHE_PF00550 136 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 86361087 Common ooxB D-Octopine oxidase, subunit B protein RHE_PF00357 107 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86360902 Common flgE flagellar hook protein FlgE RHE_PF00171 136 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 86361231 Common fixHf cation pump membrane (nitrogen fixation)protein RHE_PF00502 17 COG5456 COG5456, Predicted integral membrane protein linked to a cation pump Inorganic ion transport and metabolism 86361281 Nonpathogen - hypothetical protein RHE_PF00553 1 None None None 86361058 Nonpathogen - hypothetical protein RHE_PF00328 2 None None None 86361284 Common - hypothetical protein RHE_PF00556 13 None None None 86360792 Common - hypothetical protein RHE_PF00058 24 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 86360909 Common - probable methyl-accepting chemotaxis protein RHE_PF00178 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 86361045 Common - hypothetical protein RHE_PF00315 2 None None None 86361276 Common - putative two-component response regulator protein RHE_PF00547 211 COG4566 TtrR, Response regulator Signal transduction mechanisms 86361078 Common - putative acetyltransferase protein RHE_PF00348 22 COG2153 ElaA, Predicted acyltransferase General function prediction only 86361032 Common - probable sugar ABC transporter, permease protein RHE_PF00302 180 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86361029 Common mcpB methyl-accepting chemotaxis protein RHE_PF00299 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 86361022 Common - probable sugar ABC transporter, permease protein RHE_PF00292 141 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86361195 Common fhuB iron-hydroxamate transporter permease subunit RHE_PF00465 182 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 86360991 Nonpathogen - hypothetical protein RHE_PF00261 6 None None None 86361258 Nonpathogen - hypothetical protein RHE_PF00529 1 None None None 86360794 Common - hypothetical protein RHE_PF00060 33 COG0657 Aes, Esterase/lipase Lipid metabolism 86361009 Nonpathogen - putative beta-lactamase-like domain protein RHE_PF00279 8 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 86360926 Common - putative oxidoreductase protein RHE_PF00195 104 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 86360967 Common - probable calcium-binding protein, regucalcin RHE_PF00237 74 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 86360776 Common rbcL ribulose bisphosphate carboxylaseoxygenase, large subunit protein RHE_PF00042 67 COG1850 RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit Carbohydrate transport and metabolism 86361004 Common ilvB hypothetical protein RHE_PF00274 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 86361225 Common ccmF cytochrome c-type biogenesis protein RHE_PF00496 148 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 86361039 Common - probable amino acid ABC transporter, permease protein RHE_PF00309 191 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 86361099 Common - probable proline dipeptidase protein, M24 family RHE_PF00369 139 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 86360867 Nonpathogen - hypothetical protein RHE_PF00136 1 None None None 86360842 Nonpathogen - hypothetical protein RHE_PF00109 1 None None None 86361137 Common stcD 2,4-dienoyl-CoA reductase (NADPH) protein RHE_PF00407 191 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 86361157 Common - hypothetical protein RHE_PF00427 3 None None None 86360887 Common - putative zinc-dependent alcohol dehydrogenase protein RHE_PF00156 151 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 86361012 Common - probable nucleotide permease protein RHE_PF00282 50 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 162329649 Common - probable DNA mismatch endonuclease protein RHE_PF00110 71 COG3727 Vsr, DNA G:T-mismatch repair endonuclease DNA replication, recombination, and repair 86360934 Common - probable Zn-dependent oxidoreductase protein RHE_PF00203 202 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 86361168 Common dadR alanine catabolic operon transcriptional regulator protein, AsnC family RHE_PF00438 132 COG1522 Lrp, Transcriptional regulators Transcription 86361068 Common - probable aldehyde dehydrogenase protein RHE_PF00338 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86361001 Common - probable iron ABC transporter, ATP-binding protein RHE_PF00271 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 86361173 Common - putative dehydrogenase large subunit protein RHE_PF00443 65 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 86361251 Common - hypothetical protein RHE_PF00522 11 None None None 86360911 Common - probable peptidase protein RHE_PF00180 163 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 86361210 Common - probable two-component sensor histidine kinase protein RHE_PF00480 138 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 86361217 Common - putative alpha-mannosidase protein RHE_PF00487 53 COG0383 AMS1, Alpha-mannosidase Carbohydrate transport and metabolism 86360808 Common cheBf protein-glutamate methylesterase protein RHE_PF00075 148 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 86360829 Common - probable sugar ABC transporter, substrate-binding protein RHE_PF00096 51 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360920 Common - probable transcriptional regulator protein, AsnC family RHE_PF00189 135 COG1522 Lrp, Transcriptional regulators Transcription 86361113 Common - putative epimerase protein RHE_PF00383 77 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 86360900 Common casR calsymin transcriptional regulator, TetR family RHE_PF00169 91 COG1309 AcrR, Transcriptional regulator Transcription 86360970 Common dppBf dipeptide ABC transporter, permease protein RHE_PF00240 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 86361072 Common - probable dehalogenase protein RHE_PF00342 37 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 86360745 Common - probable zinc-dependent oxidoreductase protein RHE_PF00011 165 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 86361138 Common - probable transcriptional regulator protein, TetR family RHE_PF00408 31 COG1309 AcrR, Transcriptional regulator Transcription 86361076 Common - putative hydroxypyruvate isomerase protein RHE_PF00346 76 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 86360891 Common - probable amino acid ABC transporter, permease protein RHE_PF00160 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86361189 Common vbsA N6-hydroxylysine O-acetyltransferase protein RHE_PF00459 41 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 86361233 Common fixPf cytochrome C oxidase, fixP chain (cbb3-type subunit III) protein RHE_PF00504 76 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 86360982 Nonpathogen - hypothetical protein RHE_PF00252 1 None None None 86360798 Common - hypothetical protein RHE_PF00064 3 None None None 86360975 Common - probable multidrug ABC transporter, permease protein RHE_PF00245 112 COG2962 RarD, Predicted permeases General function prediction only 86361286 Common - putative S-adenosylmethionine tRNA ribosyltransferase protein RHE_PF00558 173 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 86360871 Nonpathogen - hypothetical protein RHE_PF00140 3 None None None 86361268 Common - probable dioxygenase protein RHE_PF00539 129 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 86361103 Common - probable transcriptional regulator protein, TetR family RHE_PF00373 11 COG1309 AcrR, Transcriptional regulator Transcription 86361184 Common nrtCf nitrate ABC transporter, ATP-binding protein RHE_PF00454 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 86360770 Common - hypothetical protein RHE_PF00036 11 COG5618 COG5618, Predicted periplasmic lipoprotein General function prediction only 86360919 Common - putative transcriptional regulator protein, GntR family RHE_PF00188 188 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 86361271 Common - probable enoyl-CoA hydratase protein RHE_PF00542 146 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 86361114 Common putA bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase RHE_PF00384 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 86361055 Common - hypothetical protein RHE_PF00325 19 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 86360839 Common - hypothetical protein RHE_PF00106 27 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 86361148 Common - probable D-threo-aldose 1-dehydrogenase protein RHE_PF00418 148 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 86360946 Common - probable D-ribose ABC transporter, permease protein RHE_PF00215 132 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 86360860 Nonpathogen - hypothetical protein RHE_PF00129 4 None None None 86360819 Common - putative NTP pyrophosphohydrolase protein RHE_PF00086 28 COG4119 COG4119, Predicted NTP pyrophosphohydrolase DNA replication, recombination, and repair / General function prediction only 86360908 Nonpathogen - hypothetical protein RHE_PF00177 1 None None None 86361144 Common - probable transcriptional regulator protein, AraC family RHE_PF00414 38 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 86360824 Common - probable sugar ABC transporter, substrate-binding protein RHE_PF00091 49 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360805 Common - probable two-component response regulator protein RHE_PF00072 46 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86360912 Common ocdf ornithine cyclodeaminase RHE_PF00181 88 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 86361193 Common vbsC vicibactin acetylase protein RHE_PF00463 8 COG0456 RimI, Acetyltransferases General function prediction only 86360748 Common phbAf acetyl-CoA acetyltransferase (beta-ketothiolase) protein RHE_PF00014 171 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 86361092 Common mcpZf2 methyl-accepting chemotaxis protein RHE_PF00362 161 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 86360767 Common - probable oxidoreductase protein RHE_PF00033 158 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 86361264 Nonpathogen - hypothetical protein RHE_PF00535 1 None None None 86361215 Common - probable gluconolactonase precursor protein RHE_PF00485 80 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 86360897 Common - probable amino acid ABC transporter, permease protein RHE_PF00166 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86361006 Common - probable trehalose synthase protein RHE_PF00276 173 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 86360848 Nonpathogen - hypothetical protein RHE_PF00115 1 None None None 86361089 Common - probable aldehyde dehydrogenase protein RHE_PF00359 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86360841 Common - probable DNA (cytosine-5-)-methyltransferase protein RHE_PF00108 123 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 86361119 Common - putative ferredoxin oxidoreductase protein RHE_PF00389 145 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 86361203 Common bglSf beta-glucosidase protein RHE_PF00473 136 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 86360881 Common - hypothetical protein RHE_PF00150 32 COG4544 COG4544, Uncharacterized conserved protein Function unknown 86360885 Nonpathogen - hypothetical protein RHE_PF00154 3 None None None 86360898 Common - probable amino acid ABC transporter, substrate-binding protein RHE_PF00167 162 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 86360965 Common - probable transcriptional regulator protein, GntR family RHE_PF00235 121 COG2186 FadR, Transcriptional regulators Transcription 86361161 Common - hypothetical protein RHE_PF00431 4 None None None 86360759 Common - hypothetical protein RHE_PF00025 12 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 86361034 Common - probable alpha-L-fucosidase protein RHE_PF00304 33 COG3669 COG3669, Alpha-L-fucosidase Carbohydrate transport and metabolism 86360855 Nonpathogen - hypothetical protein RHE_PF00123 3 None None None 86360931 Common - probable transcriptional regulator protein, AsnC family RHE_PF00200 135 COG1522 Lrp, Transcriptional regulators Transcription 86360927 Common - probable aldehyde dehydrogenase protein RHE_PF00196 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86360869 Nonpathogen - hypothetical protein RHE_PF00138 13 COG4420 COG4420, Predicted membrane protein Function unknown 86360793 Common - hypothetical protein RHE_PF00059 26 COG3652 COG3652, Predicted outer membrane protein Function unknown 86361014 Common - probable efflux transporter protein, acriflavin resistance protein family RHE_PF00284 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 86361241 Common - putative copper export protein RHE_PF00512 23 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 86361023 Common - probable sugar ABC transporter, ATP-binding protein RHE_PF00293 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86360993 Common - probable 1,4-alpha-glucan branching enzyme protein RHE_PF00263 166 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 86361256 Common nnrR denitrification transcriptional regulator protein, CRP family RHE_PF00527 168 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86360796 Nonpathogen - hypothetical protein RHE_PF00062 1 None None None 86361016 Common - probable protein secretion protein, HlyD family RHE_PF00286 168 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 86360873 Common - short chain dehydrogenase RHE_PF00142 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 86361292 Common - probable oxidoreductase protein RHE_PF00564 169 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 86361182 Common nrtA nitrate ABC transporter, substrate binding protein RHE_PF00452 87 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 86360736 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase RHE_PF00002 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 86361040 Common - probable two-component sensor histidine kinase protein RHE_PF00310 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 86360977 Common - probable phospholipase D protein RHE_PF00247 32 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 86361101 Common - hypothetical protein RHE_PF00371 19 COG5564 COG5564, Predicted TIM-barrel enzyme, possibly a dioxygenase General function prediction only 86360917 Common - probable amino acid ABC transporter, substrate-binding protein RHE_PF00186 114 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 86360850 Common - hypothetical protein RHE_PF00117 6 None None None 86360906 Nonpathogen - hypothetical protein RHE_PF00175 12 None None None 86360757 Common - hypothetical protein RHE_PF00023 48 COG3791 COG3791, Uncharacterized conserved protein Function unknown 86361207 Common - hypothetical protein RHE_PF00477 3 None None None 86360910 Common - hypothetical protein RHE_PF00179 52 COG3608 COG3608, Predicted deacylase General function prediction only 86361049 Common - putative sugar ABC transporter, ATP-binding protein RHE_PF00319 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86361070 Common gabDf1 succinate semialdehyde dehydrogenase protein RHE_PF00340 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86361280 Common - putative formate dehydrogenase oxidoreductase protein RHE_PF00552 67 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 86360773 Common rpiB ribose-5-phosphate isomerase B RHE_PF00039 127 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 86361074 Common - probable transcriptional regulator protein, LacI family RHE_PF00344 115 COG1609 PurR, Transcriptional regulators Transcription 86360984 Common glnP/glnQ glutamine ABC transporter, ATP-binding protein RHE_PF00254 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 86360785 Common - hypothetical protein RHE_PF00051 37 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 86360791 Common - hypothetical protein RHE_PF00057 11 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86361133 Common - hypothetical protein RHE_PF00403 5 None None None 86360746 Common - probable thioesterase protein RHE_PF00012 66 COG0824 FcbC, Predicted thioesterase General function prediction only 86361142 Common - probable amino acid ABC transporter, ATP-binding protein RHE_PF00412 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 86361146 Common - probable formate dehydrogenase alpha chain protein RHE_PF00416 171 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 86361090 Common - probable transcriptional regulator protein (leucine-responsive), AsnC family RHE_PF00360 153 COG1522 Lrp, Transcriptional regulators Transcription 86361244 Common norC nitric oxide reductase protein RHE_PF00515 36 None None None 86361235 Common fixOf cytochrome C oxidase, fixO chain protein RHE_PF00506 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 86360830 Common - probable sugar ABC transporter, permease protein RHE_PF00097 146 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86360844 Nonpathogen - hypothetical protein RHE_PF00111 1 None None None 86360769 Common - probable ribose ABC transporter, ATP-binding protein RHE_PF00035 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 86361228 Common - probable transcriptional regulator (activator) protein, CRP family RHE_PF00499 107 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86360878 Common - hypothetical protein RHE_PF00147 36 COG2135 COG2135, Uncharacterized conserved protein Function unknown 86361266 Nonpathogen - hypothetical protein RHE_PF00537 6 None None None 86360743 Common - probable transcriptional regulator protein, LysR family RHE_PF00009 132 COG0583 LysR, Transcriptional regulator Transcription 86360810 Common - putative two-component response regulator protein RHE_PF00077 11 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 86361020 Common - probable transcriptional regulator protein, ROK family RHE_PF00290 63 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 86360761 Common - probable DNA hydrolase protein, MutT/nudix protein family RHE_PF00027 92 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 86361057 Common - hypothetical protein RHE_PF00327 3 None None None 86361153 Nonpathogen - hypothetical protein RHE_PF00423 14 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 86361187 Common vbsS vicibactin biosynthesis non-ribosomal peptide synthase protein RHE_PF00457 216 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 86360812 Common - putative two-component sensor histidine kinase protein RHE_PF00079 75 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 86360938 Common thuK trehalosemaltose ABC transporter, ATP-binding protein RHE_PF00207 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86360883 Common dnaEf DNA polymerase III alpha subunit protein RHE_PF00152 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 86360826 Common - probable sugar ABC transporter, permease protein RHE_PF00093 190 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86360787 Common - hypothetical protein RHE_PF00053 11 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 86360958 Common - putative NADPH:quinone reductase protein RHE_PF00228 90 COG0431 COG0431, Predicted flavoprotein General function prediction only 86361213 Common - probable sugar ABC transporter, permease protein RHE_PF00483 61 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 86360955 Common - probable two-component response regulator protein RHE_PF00225 216 COG4566 TtrR, Response regulator Signal transduction mechanisms 86361117 Common - putative transcriptional regulator protein, LysR family RHE_PF00387 157 COG0583 LysR, Transcriptional regulator Transcription 86361126 Common - putative oxidoreductase protein RHE_PF00396 84 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86361198 Common fhuF ferric iron reductase protein RHE_PF00468 11 COG4114 FhuF, Uncharacterized Fe-S protein General function prediction only 86361209 Common - probable two-component response regulator protein RHE_PF00479 153 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 86361221 Common - hypothetical protein RHE_PF00492 79 COG3000 ERG3, Sterol desaturase Lipid metabolism 86361171 Nonpathogen - hypothetical protein RHE_PF00441 1 None None None 86361108 Common - probable sugar ABC transporter, ATP-binding protein RHE_PF00378 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86361061 Common - hypothetical protein RHE_PF00331 71 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 86360923 Common - probable amino acid ABC transporter, substrate-binding protein RHE_PF00192 136 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 86361025 Common - hypothetical protein RHE_PF00295 21 COG4225 COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins General function prediction only 86361254 Common nirK nitrite reductase protein RHE_PF00525 50 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 86360857 Common - hypothetical protein RHE_PF00126 3 None None None 86360862 Nonpathogen - hypothetical protein RHE_PF00131 1 None None None 86361163 Common - putative transcriptional regulator protein, MerR family RHE_PF00433 104 COG1396 HipB, Predicted transcriptional regulators Transcription 86361191 Common vbsL hypothetical protein RHE_PF00461 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 86361112 Common - putative epimerase protein RHE_PF00382 36 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 86361065 Common argE acetylornithine deacetylase RHE_PF00335 200 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 86360995 Common - probable two-component sensor histidine kinase/response regulator hybrid protein RHE_PF00265 225 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 86361290 Nonpathogen - hypothetical protein RHE_PF00562 2 None None None 86360846 Nonpathogen - hypothetical protein RHE_PF00113 5 None None None 86360963 Common - probable oligopeptide ABC transporter, permease protein RHE_PF00233 217 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 86360754 Common - putative ribonuclease protein RHE_PF00020 50 COG1295 Rbn, Predicted membrane protein Function unknown 86361086 Common - putative D-amino acid oxidase protein RHE_PF00356 94 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86360874 Common - putative tautomerase protein RHE_PF00143 8 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 86360859 Nonpathogen - hypothetical protein RHE_PF00128 1 None None None 86361118 Common - putative dyoxygenase (alpha subunit) oxidoreductase protein RHE_PF00388 86 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 86361196 Common - probable dehydrogenase protein RHE_PF00466 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 86361079 Common - hypothetical protein RHE_PF00349 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 86361299 Common repAf1 plasmid partitioning protein RepAf1 RHE_PF00571 205 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 86360866 Common - hypothetical protein RHE_PF00135 25 COG5528 COG5528, Predicted integral membrane protein Function unknown 86360903 Common flgK flagellar hook-associated protein FlgK RHE_PF00172 58 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 86361062 Common - probable transcriptional regulator protein, LysR family RHE_PF00332 146 COG0583 LysR, Transcriptional regulator Transcription 86361246 Common norQ nitric-oxide reductase protein RHE_PF00517 80 COG0714 COG0714, MoxR-like ATPases General function prediction only 86361259 Common - probable two-component response regulator protein RHE_PF00530 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 86361186 Common vbsO L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein RHE_PF00456 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 86361252 Common - hypothetical protein RHE_PF00523 143 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 86360997 Common - hypothetical protein RHE_PF00267 5 None None None 86361106 Common - probable sugar ABC transporter, permease protein RHE_PF00376 178 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86361036 Common - probable transcriptional regulator protein, GntR family RHE_PF00306 140 COG2186 FadR, Transcriptional regulators Transcription 86361026 Common - hypothetical protein RHE_PF00296 5 None None None 86360852 Nonpathogen - hypothetical protein RHE_PF00119 1 None None None 86361218 Common - hypothetical protein RHE_PF00488 13 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 86361000 Common - probable iron ABC transporter, permease protein RHE_PF00270 192 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 86361247 Common norD nitric oxide reductase protein RHE_PF00518 45 COG4548 NorD, Nitric oxide reductase activation protein Inorganic ion transport and metabolism 86360828 Common - probable transcriptional regulator protein, GntR family RHE_PF00095 102 COG1802 GntR, Transcriptional regulators Transcription 86360777 Common - transcriptional regulator NanR RHE_PF00043 138 COG2186 FadR, Transcriptional regulators Transcription 86360774 Common tpiA triosephosphate isomerase RHE_PF00040 215 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 86361211 Common - probable sugar ABC transporter, substrate-binding protein RHE_PF00481 62 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360935 Common - hypothetical protein RHE_PF00204 35 None None None 86360815 Common - hypothetical protein RHE_PF00082 5 None None None 86360783 Common - probable sucrose ABC transporter, permease protein RHE_PF00049 146 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86360951 Common - hypothetical protein RHE_PF00221 44 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 86360781 Common - probable sucrose ABC transporter, substrate-binding protein RHE_PF00047 72 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360762 Common - putative transporter, permease protein RHE_PF00028 48 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 86361059 Common groESf 10 kDa chaperonin, heat shock protein RHE_PF00329 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 86360789 Common - hypothetical protein RHE_PF00055 19 COG4944 COG4944, Uncharacterized protein conserved in bacteria Function unknown 86360800 Common - probable transcriptional regulator protein, GntR family RHE_PF00067 145 COG2186 FadR, Transcriptional regulators Transcription 86361150 Common - hypothetical protein RHE_PF00420 25 COG3652 COG3652, Predicted outer membrane protein Function unknown 86360772 Common - hypothetical protein RHE_PF00038 11 COG2085 COG2085, Predicted dinucleotide-binding enzymes General function prediction only 86360864 Nonpathogen - hypothetical protein RHE_PF00133 2 None None None 86361132 Common adhCf formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein RHE_PF00402 208 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 86361275 Common - putative epoxide hydrolase protein RHE_PF00546 38 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 86360817 Common - putative hydrolase protein RHE_PF00084 21 COG4186 COG4186, Predicted phosphoesterase or phosphohydrolase General function prediction only 86361050 Nonpathogen - hypothetical protein RHE_PF00320 3 None None None 86361237 Common fixKf nitrogen fixation transcriptional regulator protein, Fnr/CRP family RHE_PF00508 121 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86361060 Common groEL chaperonin GroEL RHE_PF00330 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 86361300 Common repBf1 plasmid partitioning protein RepBf1 RHE_PF00572 129 COG1475 Spo0J, Predicted transcriptional regulators Transcription 86360985 Common glnH glutamine ABC transporter, substrate binding protein RHE_PF00255 166 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 86361140 Common - probable amino acid ABC transporter, substrate-binding protein RHE_PF00410 37 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 86360797 Common - hypothetical protein RHE_PF00063 5 None None None 86361097 Common - probable transcriptional regulator protein, GntR family RHE_PF00367 100 COG1802 GntR, Transcriptional regulators Transcription 86361178 Common - putative metallo-beta-lactamase superfamily protein RHE_PF00448 28 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 86360835 Common - putative DNA helicase protein RHE_PF00102 27 COG1204 COG1204, Superfamily II helicase General function prediction only 86361206 Common - probable transcriptional regulator protein RHE_PF00476 128 COG0583 LysR, Transcriptional regulator Transcription 86360807 Common - putative two-component response regulator protein RHE_PF00074 27 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 86361230 Common fixIf cation transport ATPase protein RHE_PF00501 231 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 86360741 Common - hypothetical protein RHE_PF00007 13 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 86360961 Common - probable oligopeptide ABC transporter, ATP-binding protein RHE_PF00231 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 86360742 Common - probable oxidoreductase protein RHE_PF00008 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 86361188 Common vbsG polyketide synthase protein RHE_PF00458 24 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 86360752 Common - hypothetical protein RHE_PF00018 20 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 86361277 Common - probable two-component response regulator protein RHE_PF00548 217 COG4566 TtrR, Response regulator Signal transduction mechanisms 86360913 Common - threonine dehydratase RHE_PF00182 207 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 86360943 Common repCf2 plasmid replication protein RepCf2 RHE_PF00212 17 None None None 86361136 Common - putative transcriptional regulator protein RHE_PF00406 7 None None None 86360972 Common dppDf dipeptide ABC transporter, ATP-binding protein RHE_PF00242 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 86360893 Common - probable amino acid ABC transporter, substrate-binding protein RHE_PF00162 168 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 86360737 Common oxyR hydrogen peroxide sensing transcriptional regulator protein, LysR family RHE_PF00003 186 COG0583 LysR, Transcriptional regulator Transcription 86360735 Common panC pantoate--beta-alanine ligase RHE_PF00001 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 86361297 Common - hypothetical protein RHE_PF00569 38 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 86360966 Common - hypothetical protein RHE_PF00236 67 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 86360925 Common - probable 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase protein RHE_PF00194 191 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 86360795 Common - hypothetical protein RHE_PF00061 28 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86361098 Common - hypothetical protein RHE_PF00368 110 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 86361257 Common nnrU denitrification regulator protein RHE_PF00528 19 COG4094 COG4094, Predicted membrane protein Function unknown 86361038 Common - probable amino acid ABC transporter, ATP-binding protein RHE_PF00308 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 86361250 Common - hypothetical protein RHE_PF00521 23 None None None 86361044 Common - hypothetical protein RHE_PF00314 4 None None None 86360779 Common - probable sucrose ABC transporter, ATP-binding protein RHE_PF00045 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 86360999 Common - probable iron ABC transporter, substrate-binding protein RHE_PF00269 86 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 86361165 Common - probable transcriptional regulator protein, AraC family RHE_PF00435 82 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 86361028 Common - hypothetical protein RHE_PF00298 41 COG4949 COG4949, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 86361088 Common ooxA D-Octopine oxidase, subunit A protein RHE_PF00358 66 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 86361120 Common - probable transcriptional regulator protein, AraC family RHE_PF00390 151 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 86361011 Common corAf magnesium/cobalt transporter protein RHE_PF00281 131 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 86361008 Nonpathogen - hypothetical protein RHE_PF00278 1 None None None 86360868 Common trxBf thioredoxin reductase (NADPH) protein RHE_PF00137 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 86361174 Common - hypothetical protein RHE_PF00444 14 None None None 86361002 Common - probable transcriptional regulator protein, AsnC family RHE_PF00272 148 COG1522 Lrp, Transcriptional regulators Transcription 86361124 Common - probable glycine betaine/L-proline ABC transporter, ATP-binding protein RHE_PF00394 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 86360886 Common - probable transcriptional regulator protein, MarR family RHE_PF00155 151 COG1733 COG1733, Predicted transcriptional regulators Transcription 86360932 Common - probable succinate-semialdehyde dehydrogenase protein RHE_PF00201 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86360989 Nonpathogen - hypothetical protein RHE_PF00259 1 None None None 86360751 Common - hypothetical protein RHE_PF00017 79 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 86360933 Common - hypothetical protein RHE_PF00202 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 86361067 Nonpathogen - hypothetical protein RHE_PF00337 1 None None None 86361031 Common - probable sugar ABC transporter, permease protein RHE_PF00301 158 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86360895 Common - probable amino acid ABC transporter, ATP-binding protein RHE_PF00164 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 86361084 Common - probable oligopeptide ABC transporter, ATP-binding protein RHE_PF00354 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 86361129 Common - probable transcriptional regulator protein, GntR family RHE_PF00399 115 COG1802 GntR, Transcriptional regulators Transcription 86361216 Nonpathogen - putative methyl-accepting chemotaxis protein RHE_PF00486 1 None None None 86360888 Common - hypothetical protein RHE_PF00157 18 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 86360987 Nonpathogen - hypothetical protein RHE_PF00257 1 None None None 86361155 Common - hypothetical protein RHE_PF00425 14 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 86360739 Common rdh ribitol 2-dehydrogenase protein RHE_PF00005 226 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 86361149 Common - hypothetical protein RHE_PF00419 78 COG3189 COG3189, Uncharacterized conserved protein Function unknown 86361176 Common - probable myo-inositol catabolism protein RHE_PF00446 68 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 86360809 Common cheRf chemotaxis methyltransferase protein RHE_PF00076 168 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 86361104 Common - putative sugar ABC transporter, substrate-binding protein RHE_PF00374 88 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86361122 Common - probable glycine betaine/L-proline ABC transporter, permease protein RHE_PF00392 151 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 86361240 Common - hypothetical protein RHE_PF00511 25 COG4549 COG4549, Uncharacterized protein conserved in bacteria Function unknown 86361273 Common - probable isochorismatase protein RHE_PF00544 109 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 86360764 Common - probable dihydroxyacetone kinase, phosphatase domain protein RHE_PF00030 71 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 86361158 Common - putative malate dehydrogenase protein RHE_PF00428 59 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 86361239 Common azuPf pseudoazurin blue-copper protein RHE_PF00510 30 COG3794 PetE, Plastocyanin Energy production and conversion 86360837 Common - hypothetical protein RHE_PF00104 36 None None None 86360974 Common - hypothetical protein RHE_PF00244 3 None None None 86361082 Common - probable oligopeptide ABC transporter, permease protein RHE_PF00352 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 86361052 Common - hypothetical protein RHE_PF00322 18 COG4289 COG4289, Uncharacterized protein conserved in bacteria Function unknown 86361069 Common - 3-isopropylmalate dehydrogenase RHE_PF00339 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 86361116 Common - hypothetical protein RHE_PF00386 9 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 86361261 Common - probable transcriptional regulator protein, LuxR family RHE_PF00532 99 COG3903 COG3903, Predicted ATPase General function prediction only 86361205 Common - putative hydrolase protein RHE_PF00475 16 COG1647 COG1647, Esterase/lipase General function prediction only 86361018 Common - probable transcriptional regulator protein, LacI family RHE_PF00288 126 COG1609 PurR, Transcriptional regulators Transcription 86360901 Common casA calcium-binding protein RHE_PF00170 7 COG5126 FRQ1, Ca2+-binding protein (EF-Hand superfamily) Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only 86361293 Common - putative sugar ABC transporter, substrate-binding protein RHE_PF00565 57 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86360821 Common - probable UDP-glucose 4-epimerase protein RHE_PF00088 87 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 86360876 Common - probable transcriptional regulator protein, LysR family RHE_PF00145 150 COG0583 LysR, Transcriptional regulator Transcription 86360990 Nonpathogen - hypothetical protein RHE_PF00260 1 None None None 86361021 Common - probable sugar ABC transporter, permease protein RHE_PF00291 142 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86361232 Common fixGf ferrodoxin oxidase protein RHE_PF00503 76 COG0348 NapH, Polyferredoxin Energy production and conversion 86360968 Common dapAf2 dihydrodipicolinate synthase protein RHE_PF00238 205 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 86361095 Common - putative alcohol dehydrogenase protein RHE_PF00365 165 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 86361224 Common - hypothetical protein RHE_PF00495 94 COG2135 COG2135, Uncharacterized conserved protein Function unknown 86361282 Nonpathogen - hypothetical protein RHE_PF00554 1 None None None 86360941 Common thuE trehalosemaltose ABC transporter, sugar-binding protein RHE_PF00210 102 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86361287 Common - putative short chain dehydrogenase protein RHE_PF00559 235 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 86360979 Common - putative metal-dependent hydrolase protein RHE_PF00249 86 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 86361042 Common - probable isochorismatase protein RHE_PF00312 65 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 86360840 Common - hypothetical protein RHE_PF00107 22 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 86360959 Common - putative isomerase protein RHE_PF00229 107 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 86361226 Common ccmE cytochrome c-type biogenesis protein CcmE RHE_PF00497 92 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 86360896 Common - probable amino acid ABC transporter, permease protein RHE_PF00165 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86360956 Common nolRf transcriptional regulator protein (repressor of nodulation genes), ArsR family RHE_PF00226 164 COG0640 ArsR, Predicted transcriptional regulators Transcription 86361274 Common - hypothetical protein RHE_PF00545 18 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 86360964 Common - probable oligopeptide ABC transporter, substrate-binding protein RHE_PF00234 167 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 86360992 Common malQ 4-alpha-glucanotransferase (amylomaltase) protein RHE_PF00262 119 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 86361091 Common - probable deaminase protein RHE_PF00361 82 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86361169 Common raiR transcriptional regulator (activator) protein, LuxR family RHE_PF00439 40 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 86360930 Common - hypothetical protein RHE_PF00199 23 None None None 86361003 Common - aromatic amino acid aminotransferase RHE_PF00273 72 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 86360880 Common dinB DNA polymerase IV RHE_PF00149 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 86360747 Common - putative long-chain-fatty-acid--CoA ligase protein RHE_PF00013 215 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 86360884 Common - hypothetical protein RHE_PF00153 3 None None None 86361167 Common dadX alanine racemase protein RHE_PF00437 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 86360939 Common thuG trehalosemaltose ABC transporter, permease protein RHE_PF00208 188 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86361160 Common - pyrroline-5-carboxylate reductase RHE_PF00430 100 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 86361125 Common - probable glycine betaine/L-proline ABC transporter, substrate-binding protein RHE_PF00395 82 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 86360854 Common htpG heat shock protein 90 RHE_PF00122 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 86361017 Common - probable transcriptional regulator protein, TetR family RHE_PF00287 121 COG1309 AcrR, Transcriptional regulator Transcription 86361139 Common - putative pyrroline-5-carboxylate reductase protein RHE_PF00409 199 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 86360799 Common - putative two-component sensor histidine kinase protein RHE_PF00065 181 COG3920 COG3920, Signal transduction histidine kinase Signal transduction mechanisms 86361192 Common rpoI RNA polymerase sigma factor protein RHE_PF00462 31 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 86361255 Common nirV nitrate reductase protein RHE_PF00526 39 COG1262 COG1262, Uncharacterized conserved protein Function unknown 86361179 Common - putative pyruvate decarboxylase protein RHE_PF00449 221 COG3961 COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only 86361162 Common - hypothetical protein RHE_PF00432 7 None None None 86361043 Common - probable transcriptional regulator protein, AraC family RHE_PF00313 108 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 86361013 Common - hypothetical protein RHE_PF00283 26 COG4782 COG4782, Uncharacterized protein conserved in bacteria Function unknown 86360847 Nonpathogen - hypothetical protein RHE_PF00114 1 None None None 86361202 Common - probable small heat shock protein RHE_PF00472 70 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 86361033 Common - putative sugar ABC transporter, substrate-binding protein RHE_PF00303 110 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86361073 Common - putative aldolase RHE_PF00343 140 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 86361199 Common fhuA ferrichrome-iron transporter, receptor protein RHE_PF00469 120 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 86361242 Nonpathogen - hypothetical protein RHE_PF00513 1 None None None 86360890 Common - probable amino acid ABC transporter, ATP-binding protein RHE_PF00159 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 86361283 Common - hypothetical protein RHE_PF00555 19 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 86360778 Nonpathogen - hypothetical protein RHE_PF00044 1 None None None 86361109 Common - putative phosphoglycerate dehydrogenase protein RHE_PF00379 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 86360976 Common - hypothetical protein RHE_PF00246 32 COG1415 COG1415, Uncharacterized conserved protein Function unknown 86361147 Common - hypothetical protein RHE_PF00417 180 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 86360947 Common - probable D-ribose ABC transporter, ATP-binding protein RHE_PF00216 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 86360907 Nonpathogen - hypothetical protein RHE_PF00176 5 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 86361077 Common - hypothetical protein RHE_PF00347 55 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 86360771 Common - probable ribose ABC transporter, substrate-binding protein RHE_PF00037 87 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 86361183 Common nrtB nitrate ABC transporter, permease protein RHE_PF00453 189 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 86360818 Common - hypothetical protein RHE_PF00085 24 None None None 86360758 Common - hypothetical protein RHE_PF00024 5 COG4088 COG4088, Predicted nucleotide kinase Nucleotide transport and metabolism 86361267 Common - hypothetical protein RHE_PF00538 115 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 86360838 Nonpathogen - hypothetical protein RHE_PF00105 16 None None None 86360870 Nonpathogen - hypothetical protein RHE_PF00139 1 None None None 86360836 Nonpathogen - hypothetical protein RHE_PF00103 1 None None None 86360802 Common - probable C4-dicarboxylate ABC transporter, permease protein RHE_PF00069 51 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 86361048 Common - putative glucoronyl hydrolase protein RHE_PF00318 20 COG4225 COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins General function prediction only 86361093 Common - putative esterase/lipase/thiestherase protein RHE_PF00363 67 COG0657 Aes, Esterase/lipase Lipid metabolism 86361154 Common - hypothetical protein RHE_PF00424 15 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 86361234 Common fixQf cytochrome C oxidase, fixQ chain protein RHE_PF00505 3 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 86360981 Nonpathogen - hypothetical protein RHE_PF00251 1 None None None 86360784 Common cscA beta-fructofuranosidase protein RHE_PF00050 53 COG1621 SacC, Beta-fructosidases (levanase/invertase) Carbohydrate transport and metabolism 86361085 Common - hypothetical protein RHE_PF00355 11 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 86360831 Common - probable sugar ABC transporter, permease protein RHE_PF00098 157 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86361295 Common - probable sugar ABC transporter, permease protein RHE_PF00567 175 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 86360749 Common - putative transcriptional regulator protein, LysR family RHE_PF00015 87 COG0583 LysR, Transcriptional regulator Transcription 86360766 Common - hypothetical protein RHE_PF00032 7 None None None 86361194 Common fhuD ferrichrome-iron ABC transporter, substrate-binding protein RHE_PF00464 46 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 86361263 Common - probable aldehyde dehydrogenase protein RHE_PF00534 183 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86361066 Common - putative D-2-hydroxyacid dehydrogenase protein RHE_PF00336 222 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 86360823 Common - probable sugar ABC transporter, ATP-binding protein RHE_PF00090 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86361289 Common - hypothetical protein RHE_PF00561 46 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 86361102 Common - hypothetical protein RHE_PF00372 29 COG5441 COG5441, Uncharacterized conserved protein Function unknown 86360994 Common - probable two-component sensor histidine kinase/response regulator hybrid protein RHE_PF00264 204 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 86361177 Common - hypothetical protein RHE_PF00447 9 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 86361212 Common - probable sugar ABC transporter, ATP binding protein RHE_PF00482 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 86360755 Nonpathogen - hypothetical protein RHE_PF00021 1 None None None 86361005 Common glgBf glycogen branching enzyme RHE_PF00275 147 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 86360882 Common - putative nucleotidyltransferase protein RHE_PF00151 66 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 86360899 Common - hypothetical protein RHE_PF00168 19 None None None 86360827 Common dapAf1 dihydrodipicolinate synthase protein RHE_PF00094 223 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 86361143 Nonpathogen - hypothetical protein RHE_PF00413 1 None None None 86360825 Common - probable sugar ABC transporter, permease protein RHE_PF00092 171 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86360937 Common thuAf trehalosemaltose utilization protein RHE_PF00206 19 COG4813 ThuA, Trehalose utilization protein Carbohydrate transport and metabolism 86361080 Common - putative 2-haloalkanoic acid dehalogenase protein RHE_PF00350 25 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 86360949 Common - probable ribose operon transcriptional regulator (repressor) protein, LacI family RHE_PF00218 124 COG1609 PurR, Transcriptional regulators Transcription 86361127 Common dhaL aldehyde dehydrogenase protein RHE_PF00397 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 86360957 Common - probable nitroreductase protein RHE_PF00227 72 COG0778 NfnB, Nitroreductase Energy production and conversion 86361019 Common - probable transcriptional regulator protein, AraC family RHE_PF00289 89 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 86361272 Nonpathogen - hypothetical protein RHE_PF00543 4 None None None 86361054 Common - probable two-component sensor histidine kinase/response regulator hybrid protein RHE_PF00324 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 86361190 Common vbsD efflux transporter inner membrane protein RHE_PF00460 152 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 86360816 Common - hypothetical protein RHE_PF00083 10 None None None 86361220 Common - hypothetical protein RHE_PF00490 175 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 86361298 Common - probable sugar ABC transporter, ATP-binding protein RHE_PF00570 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 86360962 Common - probable oligopeptide ABC transporter, permease protein RHE_PF00232 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 86360922 Common - probable amino acid ABC transporter, permease protein RHE_PF00191 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86361197 Common - probable transcriptional regulator protein, AraC family RHE_PF00467 62 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 86360929 Common - hypothetical protein RHE_PF00198 37 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 86361172 Common - putative glucoamylase protein RHE_PF00442 5 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 86361208 Nonpathogen - hypothetical protein RHE_PF00478 1 None None None 86361024 Common - probable polygalacturonase protein RHE_PF00294 23 COG5434 PGU1, Endopygalactorunase Cell envelope biogenesis, outer membrane 86360928 Common - probable nitrilotriacetate monooxygenase component B protein RHE_PF00197 115 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 86360856 Nonpathogen - hypothetical protein RHE_PF00125 1 None None None 86361035 Common - putative transcriptional regulator protein, LacI family RHE_PF00305 126 COG1609 PurR, Transcriptional regulators Transcription 86360940 Common thuF trehalosemaltose ABC transporter, permease protein RHE_PF00209 186 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86361253 Common - hypothetical protein RHE_PF00524 57 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 86361164 Common - beta alanine--pyruvate transaminase RHE_PF00434 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 86360863 Common - probable fatty acid desaturase protein RHE_PF00132 37 COG3239 DesA, Fatty acid desaturase Lipid metabolism 86361111 Common - putative mandelate racemase protein RHE_PF00381 130 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 86360954 Common - putative two-component response regulator protein RHE_PF00224 156 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 86361201 Common - probable outer membrane lipoprotein RHE_PF00471 125 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 86360944 Common repBf2 plasmid partitioning protein RepBf2 RHE_PF00213 102 COG1475 Spo0J, Predicted transcriptional regulators Transcription 86361015 Common - probable protein secretion protein, HlyD family RHE_PF00285 158 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 86360782 Common - probable sucrose ABC transporter, permease protein RHE_PF00048 146 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86361249 Common - hypothetical protein RHE_PF00520 24 COG4309 COG4309, Uncharacterized conserved protein Function unknown 86360918 Common - probable amino acid ABC transporter, ATP-binding protein RHE_PF00187 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 86360978 Common - hypothetical protein RHE_PF00248 52 COG0392 COG0392, Predicted integral membrane protein Function unknown 86360858 Nonpathogen - hypothetical protein RHE_PF00127 1 None None None 86360872 Common - putative kinase protein RHE_PF00141 178 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 86360833 Common - hypothetical protein RHE_PF00100 8 None None None 86361181 Common mcpCf methyl accepting chemotaxis protein RHE_PF00451 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 86361269 Common - probable oxidoreductase protein RHE_PF00540 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 86360756 Nonpathogen - hypothetical protein RHE_PF00022 1 None None None 86361279 Common - putative multidrug resistance efflux pump protein RHE_PF00551 125 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 86361236 Common fixNf cytochrome C oxidase, fixN chain protein RHE_PF00507 136 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 86360790 Common - putative RNA polymerase sigma factor protein, ECF family RHE_PF00056 72 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 86361046 Common - probable sugar ABC transporter, permease protein RHE_PF00316 148 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 86361075 Common - putative 3-hydroxyisobutyrate dehydrogenase protein RHE_PF00345 157 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 86361071 Common - probable FAD-dependent oxidoreductase protein RHE_PF00341 128 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86361152 Common - RNA polymerase sigma factor RHE_PF00422 169 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 86360851 Common - hypothetical protein RHE_PF00118 28 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 86360905 Nonpathogen - hypothetical protein RHE_PF00174 1 None None None 86361041 Common - probable two-component response regulator protein RHE_PF00311 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 86360924 Common pcaCf gamma-carboxymuconolactone decarboxylase protein RHE_PF00193 71 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 86361285 Nonpathogen - hypothetical protein RHE_PF00557 7 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 86361243 Common norE nitric oxide reductase protein RHE_PF00514 125 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 86361141 Common - probable amino acid ABC transporter, permease protein RHE_PF00411 216 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 86360945 Common repAf2 plasmid partitioning protein RepAf2 RHE_PF00214 211 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 86361227 Common ccmI cytochrome c-type biogenesis protein RHE_PF00498 54 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 86360845 Nonpathogen - hypothetical protein RHE_PF00112 1 None None None 86361265 Common - probable epoxide hydrolase protein RHE_PF00536 94 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 86361064 Common - putative acetyltransferase protein RHE_PF00334 23 COG2153 ElaA, Predicted acyltransferase General function prediction only 86360768 Common - probable ribose ABC transporter, permease protein RHE_PF00034 111 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 86361130 Common - glutathione-dependent formaldehyde-activating enzyme RHE_PF00400 17 COG3791 COG3791, Uncharacterized conserved protein Function unknown 86360983 Common - probable D-amino acid oxidase protein RHE_PF00253 21 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 86361134 Common etfAf electron-transport flavoprotein, alpha-subunit RHE_PF00404 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 86361056 Nonpathogen - hypothetical protein RHE_PF00326 5 None None None 86360760 Common - hypothetical protein RHE_PF00026 12 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 86360861 Common - putative cold shock protein RHE_PF00130 174 COG1278 CspC, Cold shock proteins Transcription 86360879 Common - hypothetical protein RHE_PF00148 31 COG2135 COG2135, Uncharacterized conserved protein Function unknown 86361270 Common - hypothetical protein RHE_PF00541 92 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 86360915 Common - probable amino acid ABC transporter, permease protein RHE_PF00184 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 86361214 Common - probable sugar ABC transporter, permease protein RHE_PF00484 103 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 86360813 Common - putative two-component response regulator protein RHE_PF00080 99 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 86360744 Common - hypothetical protein RHE_PF00010 7 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 86361145 Common - hypothetical protein RHE_PF00415 5 None None None 86360804 Common - probable zinc-dependent alcohol dehydrogenase protein RHE_PF00071 199 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 86360801 Common - probable C4-dicarboxylate ABC transporter, substrate-binding protein RHE_PF00068 100 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism