Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence NC_007507 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 78045352 Common icmO putative IcmO-like type IV secretion system protein XCVd0043 13 None None None 78045368 Pathogen - hypothetical protein XCVd0059 1 None None None 78045429 Pathogen - hypothetical protein XCVd0120 2 None None None 78045334 Common - ISxac3 transposase (fragment) XCVd0025 74 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 78045325 Common pilT putative PilT-like type II/IV secretion system protein XCVd0016 154 COG5008 PilU, Tfp pilus assembly protein, ATPase PilU Cell motility and secretion / Intracellular trafficking and secretion 78045363 Common - putative DNA helicase XCVd0054 36 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 78045358 Common - replicative DNA helicase XCVd0049 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 78045400 Common - IS1477 transposase XCVd0091 127 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 78045313 Common - hypothetical protein XCVd0004 5 None None None 78045404 Common - cointegrate resolution protein S fragment XCVd0095 11 None None None 78045472 Pathogen - hypothetical protein XCVd0163 3 None None None 78045340 Pathogen - putative secreted protein XCVd0031 1 None None None 78045419 Common - hypothetical protein XCVd0110 7 None None None 78045474 Pathogen - hypothetical protein XCVd0165 1 None None None 78045376 Pathogen - hypothetical protein XCVd0067 1 None None None 78045442 Common - putative site-specific DNA-methyltransferase XCVd0133 21 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 78045466 Pathogen - hypothetical protein XCVd0157 1 None None None 78045413 Pathogen avrBs1 avirulence protein AvrBs1 XCVd0104 2 None None None 78045480 Pathogen - hypothetical protein XCVd0171 1 None None None 78045433 Common - hypothetical protein XCVd0124 2 None None None 78045327 Pathogen - hypothetical protein XCVd0018 1 None None None 78045457 Pathogen - hypothetical protein XCVd0148 1 None None None 78045361 Pathogen - hypothetical protein XCVd0052 2 None None None 78045351 Pathogen - hypothetical protein XCVd0042 1 None None None 78045330 Common - IS1646 transposase XCVd0021 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 78045336 Common dotA putative TraY/DotA-like type IV secretion system protein XCVd0027 13 None None None 78045455 Pathogen - hypothetical protein XCVd0146 1 None None None 78045394 Common - hypothetical protein XCVd0085 7 None None None 78045311 Common repB Replication protein B XCVd0002 107 COG1475 Spo0J, Predicted transcriptional regulators Transcription 78045342 Common - putative family M23 peptidase precursor XCVd0033 183 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 78045410 Common - hypothetical protein XCVd0101 64 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 78045356 Common - putative antirestriction protein XCVd0047 41 COG4227 COG4227, Antirestriction protein DNA replication, recombination, and repair 78045407 Common - putative replication protein A XCVd0098 19 None None None 78045438 Common ssb Single-stranded DNA-binding protein XCVd0129 76 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 78045388 Common - UvrD/Rep-family ATP-dependent DNA helicase XCVd0079 228 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 78045374 Pathogen - hypothetical protein XCVd0065 1 None None None 78045444 Pathogen - hypothetical protein XCVd0135 1 None None None 78045347 Pathogen - hypothetical protein XCVd0038 1 None None None 78045415 Common - putative resolvase XCVd0106 7 None None None 78045423 Common - putative cointegrate resolution protein S XCVd0114 43 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 78045398 Common - hypothetical protein XCVd0089 36 COG2378 COG2378, Predicted transcriptional regulator Transcription 78045421 Common tnpA Tn5045 transposase XCVd0112 55 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 78045460 Pathogen - hypothetical protein XCVd0151 1 None None None 78045468 Pathogen - hypothetical protein XCVd0159 1 None None None 78045397 Pathogen - hypothetical protein XCVd0088 1 None None None 78045409 Pathogen - putative epsilon antitoxin of the postsegregational killing system XCVd0100 1 None None None 78045476 Pathogen icmG putative IcmG-like type IV secretion system protein XCVd0167 1 None None None 78045414 Common - putative tyrosine phosphatase XCVd0105 7 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 78045441 Pathogen - putative secreted protein XCVd0132 1 None None None 78045312 Common parB Chromosome partitioning protein XCVd0003 6 None None None 78045321 Common pilN putative PilN-like Bacterial type II and III secretion system protein XCVd0012 81 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 78045338 Pathogen - putative secreted protein XCVd0029 1 None None None 78045471 Common icmB putative IcmB-like type IV secretion system protein XCVd0162 10 COG0433 COG0433, Predicted ATPase General function prediction only 78045366 Pathogen - hypothetical protein XCVd0057 1 None None None 78045324 Common pilR putative PilR-like integral membrane protein XCVd0015 100 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 78045349 Common - putative lytic murein transglycosylase XCVd0040 27 None None None 78045437 Common - histone-like family DNA-binding protein XCVd0128 173 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 78045462 Pathogen - hypothetical protein XCVd0153 1 None None None 78045417 Common - ISxac2 transposase XCVd0108 97 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 78045425 Common - hypothetical protein XCVd0116 3 None None None 78045386 Pathogen - putative transcriptional regulator, LuxR family XCVd0077 1 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 78045447 Pathogen - hypothetical protein XCVd0138 1 None None None 78045383 Common - putative sigma-54-dependent transcriptional regulator XCVd0074 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 78045375 Pathogen - hypothetical protein XCVd0066 1 None None None 78045315 Common dotC putative DotC-like type IV secretion system protein XCVd0006 10 None None None 78045310 Common repA Replication protein A XCVd0001 210 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 78045435 Common - putative membrane-associated acetyltransferase XCVd0126 53 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 78045403 Common - cointegrate resolution protein T (fragment) XCVd0094 16 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 78045478 Common icmK putative IcmK-like type IV secretion system protein XCVd0169 9 None None None 78045384 Common - hypothetical protein XCVd0075 21 None None None 78045343 Pathogen - hypothetical protein XCVd0034 1 None None None 78045401 Common - cointegrate resolution protein T (fragment) XCVd0092 8 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 78045443 Common rdgC recombination associated protein XCVd0134 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 78045331 Common - IS1404 transposase XCVd0022 119 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 78045355 Pathogen - hypothetical protein XCVd0046 1 None None None 78045371 Pathogen - hypothetical protein XCVd0062 1 None None None 78045364 Pathogen - hypothetical protein XCVd0055 1 None None None 78045450 Common - DNA helicase XCVd0141 113 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 78045459 Common - hypothetical protein XCVd0150 150 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 78045464 Common - hypothetical protein XCVd0155 21 COG2263 COG2263, Predicted RNA methylase Translation, ribosomal structure and biogenesis 78045449 Pathogen - hypothetical protein XCVd0140 2 None None None 78045378 Common - hypothetical protein XCVd0069 3 None None None 78045381 Common - hypothetical protein XCVd0072 34 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 78045373 Pathogen - hypothetical protein XCVd0064 2 None None None 78045473 Pathogen icmJ putative IcmJ-like type IV secretion system protein XCVd0164 5 None None None 78045390 Common - hypothetical protein XCVd0081 4 None None None 78045475 Pathogen icmC putative IcmC-like type IV secretion system protein XCVd0166 1 None None None 78045445 Pathogen - hypothetical protein XCVd0136 1 None None None 78045345 Common - putative DNA topoisomerase XCVd0036 51 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 78045377 Pathogen - hypothetical protein XCVd0068 1 None None None 78045481 Common - putative replication protein XCVd0172 12 None None None 78045426 Pathogen - hypothetical protein XCVd0117 1 None None None 78045467 Pathogen - hypothetical protein XCVd0158 1 None None None 78045326 Common pilV putative PilV-like type IV prepilin XCVd0017 13 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 78045359 Common - hypothetical protein XCVd0050 5 None None None 78045353 Common - putative secreted protein XCVd0044 62 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 78045328 Pathogen - hypothetical protein XCVd0019 1 None None None 78045369 Pathogen - hypothetical protein XCVd0060 1 None None None 78045360 Pathogen - hypothetical protein XCVd0051 1 None None None 78045333 Common - ISxac3 transposase XCVd0024 146 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 78045316 Common dotB putative DotB-like type IV secretion system protein XCVd0007 165 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 78045418 Common tnpR Tn5045 resolvase XCVd0109 128 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 78045319 Pathogen - hypothetical protein XCVd0010 3 None None None 78045411 Common - hypothetical protein XCVd0102 15 COG4456 VagC, Virulence-associated protein and related proteins Function unknown 78045382 Common - hypothetical protein XCVd0073 7 None None None 78045452 Pathogen - hypothetical protein XCVd0143 1 None None None 78045461 Common traE DNA topoisomerase TraE XCVd0152 246 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 78045348 Pathogen - hypothetical protein XCVd0039 1 None None None 78045350 Common icmP putative IcmP-like type IV secretion system protein XCVd0041 10 None None None 78045389 Common - hypothetical protein XCVd0080 4 None None None 78045393 Pathogen - hypothetical protein XCVd0084 1 None None None 78045428 Common - hypothetical protein XCVd0119 3 None None None 78045412 Common - Site-specific recombinase XCVd0103 127 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 78045399 Common - IS1477 transposase fragment XCVd0090 61 None None None 78045469 Pathogen - hypothetical protein XCVd0160 1 None None None 78045335 Common - IS1479 transposase XCVd0026 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 78045406 Common tnpA Tn5044 transposase XCVd0097 54 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 78045320 Common pilL putative PilL-like lipoprotein XCVd0011 7 None None None 78045357 Pathogen - hypothetical protein XCVd0048 1 None None None 78045477 Pathogen icmE putative IcmE-like type IV secretion system protein XCVd0168 3 None None None 78045317 Common icmT putative IcmT-like type IV secretion system protein XCVd0008 5 None None None 78045454 Common - putative cytosine-specific DNA methyltransferase XCVd0145 34 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 78045405 Common - putative cointegrate resolution protein S XCVd0096 33 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 78045314 Pathogen dotD putative DotD-like type IV secretion system protein XCVd0005 3 None None None 78045430 Common - hypothetical protein XCVd0121 6 None None None 78045341 Pathogen - putative secreted protein XCVd0032 1 None None None 78045395 Common - hypothetical protein XCVd0086 2 None None None 78045439 Pathogen - hypothetical protein XCVd0130 1 None None None 78045391 Common - hypothetical protein XCVd0082 5 None None None 78045431 Common - putative integrase-like protein XCVd0122 14 None None None 78045458 Common - hypothetical protein XCVd0149 3 None None None 78045436 Common csrA2 carbon storage regulator XCVd0127 36 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 78045463 Pathogen - hypothetical protein XCVd0154 1 None None None 78045337 Pathogen - hypothetical protein XCVd0028 1 None None None 78045422 Common - hypothetical protein XCVd0113 63 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 78045420 Common - hypothetical protein XCVd0111 20 COG1569 COG1569, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 78045446 Common dsbC thiol:disulfide interchange protein XCVd0137 69 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 78045380 Common - phage integrase family protein XCVd0071 50 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 78045387 Pathogen - hypothetical protein XCVd0078 1 None None None 78045372 Pathogen - hypothetical protein XCVd0063 1 None None None 78045434 Pathogen - hypothetical protein XCVd0125 1 None None None 78045396 Common - hypothetical protein XCVd0087 2 None None None 78045392 Common - UBA/ThiF-type NAD/FAD binding fold containing protein XCVd0083 5 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 78045318 Pathogen - hypothetical protein XCVd0009 1 None None None 78045408 Common - putative Zeta toxin of the postsegregational killing system XCVd0099 17 None None None 78045344 Pathogen - hypothetical protein XCVd0035 1 None None None 78045322 Common pilO putative PilO-like pilus assembly protein XCVd0013 8 None None None 78045453 Pathogen - hypothetical protein XCVd0144 1 None None None 78045479 Common icmL putative IcmL-like type IV secretion system protein XCVd0170 9 None None None 78045367 Common - hypothetical protein XCVd0058 9 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 78045332 Pathogen - hypothetical protein XCVd0023 1 None None None 78045470 Pathogen - putative secreted protein XCVd0161 1 None None None 78045354 Common dsbG disulfide isomerase/thiol-disulfide oxidase XCVd0045 28 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 78045416 Common - ISxac2 transposase (fragment) XCVd0107 53 None None None 78045451 Pathogen - hypothetical protein XCVd0142 1 None None None 78045456 Pathogen - hypothetical protein XCVd0147 1 None None None 78045424 Common - Tn5044 transposase XCVd0115 54 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 78045385 Pathogen - hypothetical protein XCVd0076 1 None None None 78045379 Common - putative cointegrate resolution protein T XCVd0070 19 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 78045448 Common - hypothetical protein XCVd0139 13 COG5397 COG5397, Uncharacterized conserved protein Function unknown 78045346 Pathogen - hypothetical protein XCVd0037 1 None None None 78045432 Pathogen - hypothetical protein XCVd0123 1 None None None 78045402 Pathogen - putative secreted protein XCVd0093 2 None None None 78045329 Pathogen - hypothetical protein XCVd0020 1 None None None 78045465 Pathogen - hypothetical protein XCVd0156 1 None None None 78045440 Common - putative adenine-specific DNA methyltransferase XCVd0131 3 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 78045323 Common pilQ putative PilQ-like type II/IV secretion system protein XCVd0014 190 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 78045365 Pathogen - hypothetical protein XCVd0056 1 None None None 78045362 Pathogen - hypothetical protein XCVd0053 1 None None None 78045339 Common - putative secreted protein XCVd0030 6 None None None 78045427 Pathogen - hypothetical protein XCVd0118 1 None None None 78045370 Common - hypothetical protein XCVd0061 5 None None None