Rickettsia felis URRWXCal2 plasmid pRFdelta, complete sequence NC_007111 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 67459865 Common parA1 Chromosome partitioning ParA family protein RF_pd03 220 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 67459872 Pathogen - hypothetical protein RF_pd10 1 None None None 67459887 Common - Integrase RF_pd49 16 None None None 67459880 Common - Ankyrin repeat RF_pd42 52 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 67459885 Common - Conjugative transfer protein TraG RF_pd47 7 None None None 67459895 Common - Transposase RF_pd57 87 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459869 Common - Type I restriction-modification system methyltransferase subunit RF_pd07 155 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 67459901 Pathogen - hypothetical protein RF_pd63 1 None None None 67459870 Common - hypothetical protein RF_pd08 118 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 67459877 Common - Conjugative transfer protein TraA_Ti RF_pd39 59 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 67459867 Common - hypothetical protein RF_pd05 2 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 67459875 Common tdk thymidylate kinase RF_pd13 229 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 67459883 Pathogen - hypothetical protein RF_pd45 1 None None None 67459893 Common - Transposase RF_pd55 66 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459898 Common - hypothetical protein RF_pd60 44 None None None 67459904 Common - Site-specific recombinases RF_pd66 124 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 67459874 Pathogen - hypothetical protein RF_pd12 1 None None None 67459896 Common - Transposase RF_pd58 45 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459891 Common - DNA polymerase III, epsilon subunit-like protein RF_pd53 20 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 67459863 Common - Transposase RF_pd01 9 None None None 67459906 Common - hypothetical protein RF_pd68 1 None None None 67459881 Common - Putative conjugative transfer protein TraD_F RF_pd43 59 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 67459879 Common - Transposase RF_pd41 34 COG5464 COG5464, Uncharacterized conserved protein Function unknown 67459888 Common - hypothetical protein RF_pd50 3 None None None 67459886 Common - Transposase RF_pd48 41 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459894 Common - Hyaluronidase RF_pd56 13 None None None 67459868 Common - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases RF_pd06 1 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 67459871 Pathogen - hypothetical protein RF_pd09 1 None None None 67459900 Pathogen - hypothetical protein RF_pd62 2 None None None 67459878 Pathogen - hypothetical protein RF_pd40 1 None None None 67459866 Pathogen - hypothetical protein RF_pd04 1 None None None 67459876 Pathogen - Ankyrin repeat RF_pd14 1 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 67459892 Common - Transposase RF_pd54 85 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459884 Common - hypothetical protein RF_pd46 1 None None None 67459864 Pathogen - hypothetical protein RF_pd02 2 None None None 67459899 Common - Transposase RF_pd61 31 COG5464 COG5464, Uncharacterized conserved protein Function unknown 67459902 Common - Transposase RF_pd64 8 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459903 Pathogen - hypothetical protein RF_pd65 1 None None None 67459890 Common hspP1 Small heat shock protein RF_pd52 66 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 67459905 Common - Transposase RF_pd67 4 None None None 67459873 Common pat2 Patatin-like phospholipase RF_pd11 29 COG3621 COG3621, Patatin General function prediction only 67459889 Common hspP2 Small heat shock protein RF_pd51 158 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 67459882 Common - Putative conjugative transfer protein TraD_F RF_pd44 26 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 67459897 Pathogen - hypothetical protein RF_pd59 1 None None None