Rickettsia felis URRWXCal2 plasmid pRF, complete sequence NC_007110 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 67459834 Common - Transposase RF_p41 34 COG5464 COG5464, Uncharacterized conserved protein Function unknown 67459843 Common - hypothetical protein RF_p50 3 None None None 67459829 Pathogen - hypothetical protein RF_p36 1 None None None 67459807 Pathogen - Ankyrin repeat RF_p14 1 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 67459815 Pathogen - hypothetical protein RF_p22 2 None None None 67459850 Common - Transposase RF_p57 87 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459822 Pathogen - hypothetical protein RF_p29 1 None None None 67459795 Pathogen - hypothetical protein RF_p02 2 None None None 67459845 Common hspP1 Small heat shock protein RF_p52 66 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 67459859 Common - Site-specific recombinases RF_p66 124 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 67459820 Common - hypothetical protein RF_p27 27 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 67459827 Common - DNA polymerase III subunit epsilon RF_p34 121 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 67459836 Common - Putative conjugative transfer protein TraD_F RF_p43 59 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 67459800 Common - Type I restriction-modification system methyltransferase subunit RF_p07 155 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 67459854 Common - Transposase RF_p61 31 COG5464 COG5464, Uncharacterized conserved protein Function unknown 67459832 Common - Conjugative transfer protein TraA_Ti RF_p39 59 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 67459847 Common - Transposase RF_p54 85 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459817 Pathogen - hypothetical protein RF_p24 1 None None None 67459852 Pathogen - hypothetical protein RF_p59 1 None None None 67459839 Common - hypothetical protein RF_p46 1 None None None 67459861 Common - hypothetical protein RF_p68 1 None None None 67459799 Common - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases RF_p06 1 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 67459837 Common - Putative conjugative transfer protein TraD_F RF_p44 26 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 67459818 Common sca12 Cell surface antigen-like protein Sca12 RF_p25 3 None None None 67459811 Common - TPR, tetratricopeptide repeat domain RF_p18 50 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 67459803 Pathogen - hypothetical protein RF_p10 1 None None None 67459849 Common - Hyaluronidase RF_p56 13 None None None 67459825 Common tnpR TnpR resolvase RF_p32 107 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 67459830 Pathogen traD_Ti Conjugative transfer protein TraD_Ti RF_p37 1 None None None 67459856 Pathogen - hypothetical protein RF_p63 1 None None None 67459840 Common - Conjugative transfer protein TraG RF_p47 7 None None None 67459813 Pathogen - hypothetical protein RF_p20 1 COG1725 COG1725, Predicted transcriptional regulators Transcription 67459842 Common - Integrase RF_p49 16 None None None 67459823 Common - Transposase RF_p30 82 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459831 Common - Conjugative transfer protein TraA_Ti RF_p38 19 None None None 67459805 Pathogen - hypothetical protein RF_p12 1 None None None 67459851 Common - Transposase RF_p58 45 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459794 Common - Transposase RF_p01 9 None None None 67459797 Pathogen - hypothetical protein RF_p04 1 None None None 67459814 Pathogen - hypothetical protein RF_p21 1 None None None 67459844 Common hspP2 Small heat shock protein RF_p51 158 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 67459828 Common parB ParB-like nuclease domain RF_p35 150 COG1475 Spo0J, Predicted transcriptional regulators Transcription 67459821 Pathogen - hypothetical protein RF_p28 1 None None None 67459806 Common tdk thymidylate kinase RF_p13 229 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 67459808 Pathogen - hypothetical protein RF_p15 1 None None None 67459846 Common - DNA polymerase III, epsilon subunit-like protein RF_p53 20 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 67459833 Pathogen - hypothetical protein RF_p40 1 None None None 67459816 Common parA2 Plasmid stability protein ParA RF_p23 30 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 67459858 Pathogen - hypothetical protein RF_p65 1 None None None 67459809 Common - Putative Zn-dependent protease RF_p16 11 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 67459835 Common - Ankyrin repeat RF_p42 52 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 67459853 Common - hypothetical protein RF_p60 44 None None None 67459826 Pathogen - hypothetical protein RF_p33 2 None None None 67459841 Common - Transposase RF_p48 41 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459801 Common - hypothetical protein RF_p08 118 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 67459855 Pathogen - hypothetical protein RF_p62 2 None None None 67459798 Common - hypothetical protein RF_p05 2 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 67459810 Common - TPR, tetratricopeptide repeat domain RF_p17 111 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 67459802 Pathogen - hypothetical protein RF_p09 1 None None None 67459857 Common - Transposase RF_p64 8 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459848 Common - Transposase RF_p55 66 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459838 Pathogen - hypothetical protein RF_p45 1 None None None 67459796 Common parA1 Chromosome partitioning ParA family protein RF_p03 220 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 67459812 Common - hypothetical protein RF_p19 4 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 67459819 Common lon ATP-dependent protease La, bacterial type RF_p26 224 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 67459804 Common pat2 Patatin-like phospholipase RF_p11 29 COG3621 COG3621, Patatin General function prediction only 67459824 Common - Transposase RF_p31 52 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 67459860 Common - Transposase RF_p67 4 None None None