Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome NC_006905 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 62180986 Common gltX glutamyl-tRNA synthetase SC2416 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 62180148 Common narV nitrate reductase 2, gamma subunit SC1578 58 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 62182263 Common levR putative NtrC family transcriptional regulators, ATPase domain SC3693 158 COG3933 COG3933, Transcriptional antiterminator Transcription 62181289 Common tctB tricarboxylic transport SC2719 13 None None None 62181298 Common yqaE putative YqaE family transport protein SC2728 36 COG0401 COG0401, Uncharacterized homolog of Blt101 Function unknown 62180063 Common rstA DNA-binding response regulator in two-component regulatory system with RstB SC1493 215 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62182614 Common thiE thiamine-phosphate pyrophosphorylase SC4044 186 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 62181846 Common nanT putative sialic acid transporter SC3276 212 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62183003 Common creB DNA-binding response regulator CreB SC4433 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62182679 Common malK maltose/maltodextrin transporter ATP-binding protein SC4109 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 62181857 Common degS serine endoprotease SC3287 221 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 62182290 Common emrD multidrug resistance protein D SC3720 176 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181102 Common yfhJ hypothetical protein SC2532 43 COG2975 COG2975, Uncharacterized protein conserved in bacteria Function unknown 62179918 Common ydiY putative salt-induced outer membrane protein SC1348 34 COG3137 COG3137, Putative salt-induced outer membrane protein Cell envelope biogenesis, outer membrane 62182514 Common - putative C4-dicarboxylate transport system SC3944 64 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 62181823 Common yrbH D-arabinose 5-phosphate isomerase SC3253 152 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 62181834 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase SC3264 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 62181724 Common ygiH hypothetical protein SC3154 168 COG0344 COG0344, Predicted membrane protein Function unknown 62182634 Common aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein SC4064 29 COG4579 COG4579, Isocitrate dehydrogenase kinase/phosphatase Signal transduction mechanisms 62181546 Common - putative inner membrane protein SC2976 22 None None None 62179351 Common modC molybdate transporter ATP-binding protein SC0781 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 62181530 Common - putative inner membrane protein SC2960 37 COG4125 COG4125, Predicted membrane protein Function unknown 62180653 Common - histidinol-phosphate aminotransferase SC2083 235 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 62179686 Common yceH hypothetical protein SC1116 41 COG3132 COG3132, Uncharacterized protein conserved in bacteria Function unknown 62179540 Common - hypothetical protein SC0970 2 None None None 62182732 Pathogen - hypothetical protein SC4162 3 None None None 62180284 Common yciK short chain dehydrogenase SC1714 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62179841 Common - putative ATPase component of ABC-type transport system, contain duplicated ATPase domain SC1271 249 COG1124 DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 62179732 Common ycfJ hypothetical protein SC1162 26 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 62181794 Common rpsO 30S ribosomal protein S15 SC3224 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 62179992 Common sseD Secretion system effector SseD SC1422 3 None None None 62180352 Common mbhS hydrogenase-1 small subunit SC1782 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 62179432 Common ybjJ putative transport protein/putative regulatorn SC0862 72 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 62180202 Common - putative inner membrane protein SC1632 22 COG5305 COG5305, Predicted membrane protein Function unknown 62182477 Common yshA predicted outer membrane porin L SC3907 6 None None None 62179633 Common cbpA curved DNA-binding protein CbpA SC1063 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 62182885 Common pyrB aspartate carbamoyltransferase catalytic subunit SC4315 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 62179298 Common phrB deoxyribodipyrimidine photolyase SC0728 135 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 62179857 Common - putative periplasmic protein SC1287 2 None None None 62179644 Common putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase SC1074 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 62182887 Common agrR putative arginine repressor SC4317 70 COG1438 ArgR, Arginine repressor Transcription 62181178 Common - putative bacteriophage protein SC2608 17 COG2369 COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 Function unknown 62178839 Common sirA putative cytoplasmic protein SC0269 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 62181305 Common ygaM hypothetical protein SC2735 11 COG4575 ElaB, Uncharacterized conserved protein Function unknown 62182430 Common pldB lysophospholipase L2 SC3860 70 COG2267 PldB, Lysophospholipase Lipid metabolism 62182768 Pathogen ompX ail and ompX Homolog SC4198 1 None None None 62178975 Common foxA ferrioxamine receptor SC0405 123 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 62180767 Common gbpR putative transcriptional regulator, LysR family SC2197 178 COG0583 LysR, Transcriptional regulator Transcription 62182696 Common alr alanine racemase SC4126 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 62180349 Pathogen - hypothetical protein SC1779 1 None None None 62182689 Common yjbJ putative stress-response protein SC4119 55 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 62182043 Common gntR transcriptional repressor gnt-I, gntUKR (GalR/LacI familiy) SC3473 126 COG1609 PurR, Transcriptional regulators Transcription 62182485 Common yihW putative glycerol-3-phosphate regulon repressor (DeoR family) SC3915 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62181682 Common ygiR hypothetical protein SC3112 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 62182009 Common yhgG putative cytoplasmic protein SC3439 9 None None None 62182999 Common yjjX NTPase SC4429 38 COG1986 COG1986, Uncharacterized conserved protein Function unknown 62179815 Pathogen - hypothetical protein SC1245 1 None None None 62178796 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase SC0226 183 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 62182081 Common yhhT putative PerM family permease SC3511 127 COG0628 PerM, Predicted permease General function prediction only 62182711 Common - putative ABC-type bacteriocin/lantibiotic exporter, contain an N-terminal double-glycine peptidase domain SC4141 237 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 62181611 Common yggT putative integral membran resistance protein SC3041 60 COG0762 COG0762, Predicted integral membrane protein Function unknown 62182458 Common yihD putative cytoplasmic protein SC3888 18 COG3084 COG3084, Uncharacterized protein conserved in bacteria Function unknown 62182189 Common yibK putative tRNA/rRNA methyltransferase YibK SC3619 162 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 62182773 Common dcuA anaerobic C4-dicarboxylate transporter SC4203 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 62179747 Common potA putrescine/spermidine ABC transporter ATPase protein SC1177 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 62181762 Pathogen - hypothetical protein SC3192 1 None None None 62178959 Common ail putative outer membrane protein; Homolog of ail and ompX SC0389 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 62179986 Common ssaD Secretion system apparatus SsaD SC1416 10 None None None 62180005 Common ssaV secretion system apparatus protein SsaV SC1435 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 62179724 Common fhuE ferric-rhodotorulic acid outer membrane transporter SC1154 106 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 62179236 Common dacA D-alanyl-D-alanine carboxypeptidase fraction A SC0666 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 62181068 Common ppk polyphosphate kinase SC2498 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 62180454 Common ptrB protease 2 SC1884 100 COG1770 PtrB, Protease II Amino acid transport and metabolism 62182286 Common ilvB acetolactate synthase catalytic subunit SC3716 223 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 62179980 Common - putative inner membrane protein SC1410 62 COG3272 COG3272, Uncharacterized conserved protein Function unknown 62182089 Common uspB universal stress protein UspB SC3519 12 None None None 62179607 Common yccA hypothetical protein SC1037 129 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 62180682 Common wcaE predicted glycosyl transferase SC2112 61 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62182096 Common gor glutathione reductase SC3526 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 62181737 Common ygjO paral putative methyltransferase SC3167 92 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 162139552 Common fldB flavodoxin FldB SC2985 67 COG0716 FldA, Flavodoxins Energy production and conversion 62181536 Pathogen - hypothetical protein SC2966 1 None None None 62181182 Common - hypothetical protein SC2612 26 COG3646 COG3646, Uncharacterized phage-encoded protein Function unknown 162139546 Common yggU hypothetical protein SC3042 75 COG1872 COG1872, Uncharacterized conserved protein Function unknown 62181203 Common - Gifsy-1 prophage cI protein SC2633 3 None None None 62179088 Common acrA acridine efflux pump SC0518 148 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 62180512 Common yecH putative cytoplasmic protein SC1942 13 None None None 62181985 Common rpe ribulose-phosphate 3-epimerase SC3415 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 62182437 Common yigN DNA recombination protein RmuC SC3867 142 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 62179166 Common yfdH putative glycosyltransferase SC0596 176 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62179065 Common ybaV putative DNA uptake protein and related DNA-binding proteins SC0495 78 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 62181815 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase SC3245 218 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 62178990 Common yaiZ putative inner membrane protein SC0420 6 None None None 62179604 Common ybcM bacterial regulatory protein, AraC family SC1034 54 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179040 Common phnS 2-aminoethylphosphonate transporter, periplasmic-binding component SC0470 77 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 62180841 Common ompC outer membrane porin protein C SC2271 26 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62181587 Common cysA putative ABC-type cobalt transport system, ATPase component SC3017 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 62179221 Common citE citrate lyase beta chain (acyl lyase subunit) SC0651 110 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 62179488 Common dmsA anaerobic dimethyl sulfoxide reductase, subunit A SC0918 185 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62182182 Common - putative cytoplasmic protein SC3612 5 None None None 62181711 Common ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase SC3141 228 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 62179054 Common cyoB cytochrome o ubiquinol oxidase subunit I SC0484 165 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 62178942 Common yoaC putative cytoplasmic protein SC0372 6 None None None 62181558 Common - hypothetical protein SC2988 2 None None None 62178825 Common yafE putative methyltransferase in menaquinone/biotin biosynthesis SC0255 213 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62181008 Pathogen - hypothetical protein SC2438 1 None None None 62181115 Common - putative inner membrane protein SC2545 38 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 62179077 Common tesB acyl-CoA thioesterase II SC0507 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 62181187 Pathogen - Gifsy-2 prophage protein SC2617 1 None None None 62180129 Common - putative monooxygenase SC1559 11 None None None 62180209 Common ydbL putative periplasmic protein SC1639 28 COG3784 COG3784, Uncharacterized protein conserved in bacteria Function unknown 62181451 Common - putative metal-dependent hydrolase of the beta-lactamase superfamily II SC2881 58 COG1237 COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II General function prediction only 62180991 Common yfeN hypothetical protein SC2421 8 None None None 62182064 Common - hypothetical protein SC3494 45 COG0456 RimI, Acetyltransferases General function prediction only 62178997 Common proC pyrroline-5-carboxylate reductase SC0427 213 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 62180176 Common tehA potassium-tellurite ethidium and proflavin transporter SC1606 47 COG1275 TehA, Tellurite resistance protein and related permeases Inorganic ion transport and metabolism 62180382 Pathogen - hypothetical protein SC1812 2 None None None 62181230 Common - putative cytoplasmic protein SC2660 11 None None None 62182916 Common - hypothetical protein SC4346 4 None None None 62178853 Common - hypothetical protein SC0283 5 COG5435 COG5435, Uncharacterized conserved protein Function unknown 62182201 Common tdh L-threonine 3-dehydrogenase SC3631 209 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62180135 Common yddX biofilm-dependent modulation protein SC1565 4 None None None 62181396 Common invC ATP synthase SpaL SC2826 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 62180227 Common ydaA universal stress protein UspE SC1657 52 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 62178605 Common nhaR transcriptional activator NhaR SC0035 85 COG0583 LysR, Transcriptional regulator Transcription 62182469 Common glnA glutamine synthetase SC3899 227 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 62182141 Common lpfA long polar fimbria SC3571 22 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179176 Common ybdG putative transport SC0606 91 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62179481 Common cydD cysteine/glutathione ABC transporter membrane/ATP-binding component SC0911 249 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 62179937 Common ydiA hypothetical protein SC1367 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 62179257 Common - putative heatshock protein, homolog of hsp70 in Hsc66 subfamily SC0687 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 62178983 Common hemB delta-aminolevulinic acid dehydratase SC0413 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 62180033 Common slyB putative outer membrane lipoprotein SC1463 23 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 62180023 Common rnt ribonuclease T SC1453 61 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 62181465 Pathogen - hypothetical protein SC2895 1 None None None 62179976 Common ttrB Tetrathionate reductase complex, subunit B SC1406 161 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62181075 Common insF putative IS3-like transposase SC2505 107 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62179888 Common ydjA putative oxidoreductase SC1318 78 COG0778 NfnB, Nitroreductase Energy production and conversion 62180898 Common nuoA NADH dehydrogenase subunit A SC2328 162 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 62182173 Common yisR putative bacterial regulatory helix-turn-helix proteins, araC family SC3603 106 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 62179700 Common flgK flagellar hook-associated protein FlgK SC1130 114 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 62181025 Common eutB ethanolamine ammonia-lyase, heavy chain SC2455 55 COG4303 EutB, Ethanolamine ammonia-lyase, large subunit Amino acid transport and metabolism 62181646 Common uxuA mannonate dehydratase SC3076 58 COG1312 UxuA, D-mannonate dehydratase Carbohydrate transport and metabolism 62180594 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase SC2024 119 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 62181718 Common glnE bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase SC3148 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 62181219 Common yfiE putative transcriptional regulator, LysR family SC2649 187 COG0583 LysR, Transcriptional regulator Transcription 62182296 Common yidG putative inner membrane protein SC3726 6 None None None 62182960 Common ptnD putative PTS permease SC4390 41 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 62182992 Pathogen smp Phosphoserine phosphatase SC4422 2 None None None 62182657 Common - putative cytoplasmic protein SC4087 36 COG3500 COG3500, Phage protein D General function prediction only 162139617 Common fhuC iron-hydroxamate transporter ATP-binding subunit SC0192 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 62180018 Common ydhB putative DNA-binding transcriptional regulator SC1448 162 COG0583 LysR, Transcriptional regulator Transcription 62179804 Common vhsJ Gifsy-1 prophage VhsJ SC1234 19 COG4733 COG4733, Phage-related protein, tail component Function unknown 62178695 Common murG N-acetylglucosaminyl transferase SC0125 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 62181608 Common - putative transcriptional regulator SC3038 6 COG1414 IclR, Transcriptional regulator Transcription 62180948 Common - putative periplasmic protein SC2378 4 None None None 62181494 Common csdA cysteine sulfinate desulfinase SC2924 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 62178644 Common yaaU putative MFS family transport protein SC0074 154 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180873 Common yfbW putative inner membrane protein SC2303 15 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 62179525 Common aspC aromatic amino acid aminotransferase SC0955 76 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 62181212 Common rseC SoxR reducing system protein RseC SC2642 18 COG3086 RseC, Positive regulator of sigma E activity Signal transduction mechanisms 162139621 Common hpt hypoxanthine-guanine phosphoribosyltransferase SC0170 150 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 62178612 Common slpA FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) SC0042 99 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 62179851 Common yeaR putative cytoplasmic protein SC1281 15 COG3615 TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance Inorganic ion transport and metabolism 62182846 Common ytfF putative cationic amino acid transporter SC4276 43 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 62180878 Common yfbB acyl-CoA thioester hydrolase YfbB SC2308 88 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 62182271 Common gatY putative fructose-1,6-bisphosphate aldolase SC3701 177 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 62181945 Common rpsJ 30S ribosomal protein S10 SC3375 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 62180094 Common ydfJ putative membrane transport protein SC1524 165 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180078 Common opbA ABC-type proline/glycine betaine transport systems, ATPase component SC1508 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 62180756 Common yohD putative DedA family, membrane protein SC2186 96 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 62179024 Common tsx nucleoside channel; receptor of phage T6 and colicin K SC0454 19 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 62180433 Common pagO PhoPQ-activated gene; predicted integral membrane protein SC1863 144 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 62181631 Common stmR putative transcriptional regulator, LysR family SC3061 192 COG0583 LysR, Transcriptional regulator Transcription 62181158 Common - hypothetical protein SC2588 26 COG3617 COG3617, Prophage antirepressor Transcription 62181127 Common yfhA putative transcriptional regulator of two-component regulator protein (EBP familiiy) SC2557 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 62178786 Common rpsB 30S ribosomal protein S2 SC0216 230 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 62179405 Common ybiT putative ATPase component of ABC transporter with duplicated ATPase domain SC0835 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 62179828 Pathogen ysdB conserved protein in the LexA regulon SC1258 1 None None None 62181439 Common ygbF hypothetical protein SC2869 29 None None None 62178905 Pathogen rpc C3-like protein SC0335 2 None None None 62179187 Common fes enterobactin/ferric enterobactin esterase SC0617 27 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 62180449 Common yebZ putative inner membrane protein SC1879 26 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 62180262 Pathogen - putative e6 protein SC1692 1 None None None 62181567 Common - hypothetical protein SC2997 134 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 62179389 Common ybiB hypothetical protein SC0819 132 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 62182662 Common vts putative phage tail sheath protein SC4092 50 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 62179675 Common - putative inner membrane protein SC1105 61 COG3038 CybB, Cytochrome B561 Energy production and conversion 62180501 Common flhC transcriptional activator FlhC SC1931 28 None None None 62182442 Common tatB sec-independent translocase SC3872 31 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 62182740 Common basS sensor protein BasS/PmrB SC4170 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62181348 Common hycI hydrogenase 3 maturation protease SC2778 35 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 62179313 Common sucD succinyl-CoA synthetase subunit alpha SC0743 215 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 62179803 Common vtiI Gifsy-1 prophage VtiI SC1233 13 COG4723 COG4723, Phage-related protein, tail component Function unknown 62179547 Pathogen - hypothetical protein SC0977 2 None None None 62179144 Common lpxH UDP-2,3-diacylglucosamine hydrolase SC0574 77 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 62180011 Common ssaS Secretion system apparatus SsaS SC1441 31 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 62182833 Common yjfY putative outer membrane protein SC4263 7 None None None 62182306 Common ccmF cytochrome c-type biogenesis protein SC3736 158 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 62179964 Common ynhA cysteine desufuration protein SufE SC1394 93 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 62179568 Common vmtL Gifsy-2 prophage probable minor tail protein SC0998 14 COG4672 gp18, Phage-related protein Function unknown 62180214 Common ydbJ putative cytoplasmic protein SC1644 10 COG3042 Hlx, Putative hemolysin General function prediction only 62178726 Common yacH putative outer membrane protein SC0156 30 None None None 62180994 Common ypeB putative cytoplasmic protein SC2424 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 62180711 Common - hypothetical protein SC2141 3 None None None 62178591 Common bcfB fimbrial chaparone SC0021 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62180963 Common fadL long-chain fatty acid outer membrane transporter SC2393 80 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 62179036 Common xseB thiamine biosynthesis protein ThiI SC0466 95 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 62178661 Common hepA ATP-dependent helicase HepA SC0091 129 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 62180618 Common pduC Propanediol utilization: dehydratase, large subunit SC2048 13 COG4909 PduC, Propanediol dehydratase, large subunit Secondary metabolites biosynthesis, transport, and catabolism 162139581 Common pspF phage shock protein operon transcriptional activator SC1684 171 COG1221 PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain Transcription / Signal transduction mechanisms 62181504 Common recC exonuclease V subunit gamma SC2934 65 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 62179582 Common ycbW putative cytoplasmic protein SC1012 17 None None None 62179147 Common - putative outer membrane protein SC0577 11 COG4727 COG4727, Uncharacterized protein conserved in bacteria Function unknown 62179337 Common - putative cytoplasmic protein SC0767 8 COG1767 CitG, Triphosphoribosyl-dephospho-CoA synthetase Coenzyme metabolism 62180390 Common sdaA L-serine deaminase I/L-threonine deaminase I SC1820 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 62180762 Common nhg salicylate hydroxylase SC2192 72 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 62180733 Common yohN putative periplasmic protein SC2163 9 COG5455 COG5455, Predicted integral membrane protein Function unknown 62181133 Common yfhC tRNA-specific adenosine deaminase SC2563 217 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 62179288 Common pgm phosphoglucomutase SC0718 212 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 62182729 Common nrfD putative nitrate reductase, formate dependent SC4159 29 COG3301 NrfD, Formate-dependent nitrite reductase, membrane component Inorganic ion transport and metabolism 62181601 Common galP MFS family, galactose:proton symporter SC3031 206 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182160 Common glyS glycyl-tRNA synthetase subunit beta SC3590 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 62182542 Common yiiR putative inner membrane protein SC3972 17 COG3152 COG3152, Predicted membrane protein Function unknown 62182328 Common rnpA ribonuclease P SC3758 64 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 62179883 Common ydjF Hypothetical transcriptional regulator ydjF SC1313 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62182896 Common miaE hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA SC4326 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 62180781 Common - putative transcriptional regulator SC2211 12 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 62181012 Common cysU sulfate/thiosulfate transporter subunit SC2442 233 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 62182918 Pathogen - hypothetical protein SC4348 2 None None None 62179774 Common - hypothetical protein SC1204 12 None None None 62179752 Common phoP DNA-binding response regulator in two-component regulatory system with PhoQ SC1182 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62182074 Common yhhN putative inner membrane protein SC3504 16 COG3714 COG3714, Predicted membrane protein Function unknown 62179759 Common icdA isocitrate dehydrogenase SC1189 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 62181404 Common - putative acetyltransferase SC2834 45 COG0456 RimI, Acetyltransferases General function prediction only 62179414 Common yliB putative ABC transporter periplasmic binding protein SC0844 206 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 62180101 Pathogen yciF hypothetical protein SC1531 1 None None None 62182720 Common ywbH putative inner membrane protein SC4150 26 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 62181699 Common nudF ADP-ribose pyrophosphatase NudF SC3129 77 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 62179510 Pathogen - hypothetical protein SC0940 1 None None None 62178631 Common carB carbamoyl phosphate synthase large subunit SC0061 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 62181445 Pathogen - hypothetical protein SC2875 1 None None None 62178891 Common phoE outer membrane phosphoporin protein E SC0321 26 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62182135 Pathogen - hypothetical protein SC3565 1 None None None 62181623 Common mltC murein transglycosylase C SC3053 122 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 62180810 Common yejH putative ATP-dependent helicase SC2240 148 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 62181432 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SC2862 195 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 62178746 Common stiB putative fimbrial chaparone SC0176 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62179182 Common ramA putative regulatory protein SC0612 84 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 62182180 Common mtlD mannitol-1-phosphate 5-dehydrogenase SC3610 89 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 62179614 Common pipD Pathogenicity island encoded protein: SPI3 SC1044 24 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 62181630 Common cilB putative transcriptional regulator, LysR family SC3060 110 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 62182946 Pathogen - putative cytoplasmic protein SC4376 1 None None None 62182866 Common - putative cytoplasmic protein SC4296 11 None None None 62182536 Common yneA putative ABC superfamily (peri_perm), sugar transport protein SC3966 52 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 62182044 Common yhhW putative cytoplasmic protein SC3474 146 COG1741 COG1741, Pirin-related protein General function prediction only 62180914 Common - putative cytoplasmic protein SC2344 31 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 62182672 Common yjbF putative outer membrane lipoprotein SC4102 13 None None None 62180535 Common fliS flagellar protein FliS SC1965 91 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 62180401 Common cspC cold shock-like protein cspC SC1831 181 COG1278 CspC, Cold shock proteins Transcription 62178634 Common caiD carnitinyl-CoA dehydratase SC0064 180 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 62181051 Common ypfJ putative inner membrane protein SC2481 87 COG2321 COG2321, Predicted metalloprotease General function prediction only 62181345 Common hypF hydrogenase maturation protein SC2775 120 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 62181656 Common hybE hydrogenase 2-specific chaperone SC3086 20 None None None 62180375 Common ycgM predicted isomerase/hydrolase SC1805 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 62181277 Common IroE IroE SC2707 29 COG2819 COG2819, Predicted hydrolase of the alpha/beta superfamily General function prediction only 62179339 Common fhuC putative ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component SC0769 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 62180211 Common ydbH hypothetical protein SC1641 16 None None None 62181877 Common yhdP hypothetical protein SC3307 56 COG3164 COG3164, Predicted membrane protein Function unknown 62179034 Common ispA geranyltranstransferase SC0464 241 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 62179449 Common artJ ABC superfamily (bind_prot), arginine 3rd transport system SC0879 179 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62182757 Common - putative periplasmic or exported protein SC4187 6 None None None 62182397 Common rffG dTDP-glucose 4,6-dehydratase SC3827 231 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 62182793 Common yjeA lysyl-tRNA synthetase SC4223 221 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 62180048 Common ydgK putative inner membrane protein SC1478 9 None None None 62179789 Pathogen hdpD Gifsy-1 prophage head protein gpshp SC1219 3 None None None 62182825 Common yjfQ putative transcriptional repressor (DeoR family) SC4255 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62178675 Pathogen - hypothetical protein SC0105 1 None None None 62180464 Common pykA pyruvate kinase SC1894 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 62179858 Common yeaO putative cytoplasmic protein SC1288 76 COG3189 COG3189, Uncharacterized conserved protein Function unknown 62180191 Common trg methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor SC1621 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62180565 Common dcm DNA cytosine methylase SC1995 119 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 62182596 Common birA biotin--protein ligase SC4026 230 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 62180672 Common wcaK putative pyruvyl transferase SC2102 27 COG2327 WcaK, Uncharacterized conserved protein Function unknown 62178763 Common fhuD iron-hydroxamate transporter substrate-binding subunit SC0193 39 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 62181112 Common asrA anaerobic sulfide reductase SC2542 30 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 62181265 Common cyaD putative HlyD family secretion protein SC2695 122 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62179957 Common ydiH putative cytoplasmic protein SC1387 6 None None None 62180108 Common marR DNA-binding transcriptional repressor MarR SC1538 90 COG1846 MarR, Transcriptional regulators Transcription 62180547 Common fliI flagellum-specific ATP synthase SC1977 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 62180059 Common - putative periplasmic protein SC1489 100 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 62180118 Common hybF putative hydrogenase SC1548 77 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 162139510 Common malE maltose ABC transporter periplasmic protein SC4108 97 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 62182626 Common purD phosphoribosylamine--glycine ligase SC4056 232 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 62181377 Common hilD regulatory helix-turn-helix proteins, araC family SC2807 56 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62181720 Common ygiM putative signal transduction protein SC3150 32 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 62181885 Common yedY putative sulfite oxidase subunit YedY SC3315 124 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 62180731 Common thiD phosphomethylpyrimidine kinase SC2161 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 62181610 Common yggS putative enzyme with a TIM-barrel fold SC3040 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 62180604 Common cbiJ cobalt-precorrin-6x reductase SC2034 73 COG2099 CobK, Precorrin-6x reductase Coenzyme metabolism 62180907 Common yfbV hypothetical protein SC2337 23 COG3092 COG3092, Uncharacterized protein conserved in bacteria Function unknown 162139597 Common copR transcriptional regulatory protein YedW SC1046 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62179250 Common kdg 2-keto-3-deoxygluconate permease SC0680 27 None None None 62182314 Common dgoT MFS family, D-galactonate transport protein SC3744 199 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180663 Common manB phosphomannomutase in colanic acid gene cluster SC2093 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 62180751 Common yehZ putative ABC superfamily (bind_prot) transport protein (possibly glycine betaine choline transport for osmoprotection) SC2181 90 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 62179130 Common yhjE putative permease SC0560 99 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62179707 Common maf Maf-like protein SC1137 194 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 62180313 Common ychE hypothetical protein SC1743 158 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 62180576 Pathogen - hypothetical protein SC2006 1 None None None 62178813 Common rcsF outer membrane lipoprotein SC0243 13 None None None 62181163 Common - putative bacteriophage protein SC2593 8 None None None 62182419 Common yigB predicted hydrolase SC3849 67 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 62180635 Common pduV Propanediol utilization SC2065 19 COG4917 EutP, Ethanolamine utilization protein Amino acid transport and metabolism 62181965 Common ydhR hypothetical protein SC3395 19 None None None 62181041 Pathogen - putative cytoplasmic protein SC2471 1 None None None 62179095 Common dnaX DNA polymerase III subunits gamma and tau SC0525 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 62182245 Common - hypothetical protein SC3675 15 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180110 Common ydeA sugar efflux transporter SC1540 155 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179029 Common nusB transcription antitermination protein NusB SC0459 195 COG0781 NusB, Transcription termination factor Transcription 62180806 Common yejG hypothetical protein SC2236 11 None None None 62181283 Common mig putative transcription activator SC2713 5 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 62182972 Common fhuF ferric iron reductase involved in ferric hydroximate transport SC4402 16 COG4114 FhuF, Uncharacterized Fe-S protein General function prediction only 62180774 Common yeiA dihydropyrimidine dehydrogenase SC2204 170 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 62182019 Common rtcA RNA 3'-terminal-phosphate cyclase SC3449 47 COG0430 RCL1, RNA 3'-terminal phosphate cyclase RNA processing and modification 62180790 Common fruA fructose-specific PTS system IIBC component SC2220 68 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 62181803 Common glmM phosphoglucosamine mutase SC3233 239 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 62179896 Common argD bifunctional succinylornithine transaminase/acetylornithine transaminase SC1326 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 62180361 Common ycgR putative inner membrane protein SC1791 21 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 62179210 Common ahpF alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides SC0640 246 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 62182090 Common uspA universal stress protein A SC3520 37 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 62181197 Pathogen - Orf-87 SC2627 4 None None None 62181777 Common yraO DnaA initiator-associating protein DiaA SC3207 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 62182780 Common yjeI putative outer membrane lipoprotein SC4210 16 None None None 62181708 Common dsbI putative disulfide oxidoreductase SC3138 27 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 62180628 Common pduO Propanediol utilization: B12 related SC2058 130 COG2096 COG2096, Uncharacterized conserved protein Function unknown 62179366 Common uvrB excinuclease ABC subunit B SC0796 230 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 62180934 Common purF amidophosphoribosyltransferase SC2364 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 62181502 Common RecB exonuclease V subunit beta SC2932 217 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 62181440 Common ygbT putative cytoplasmic protein SC2870 42 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 62180943 Common flk predicted flagella assembly protein SC2373 10 None None None 62181868 Common argR arginine repressor SC3298 75 COG1438 ArgR, Arginine repressor Transcription 62180746 Common yehV putative transcriptional repressor (MerR family) SC2176 30 COG0789 SoxR, Predicted transcriptional regulators Transcription 62182279 Common uhpB sensory histidine kinase UhpB SC3709 145 COG3851 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific Signal transduction mechanisms 62179307 Common sdhC succinate dehydrogenase cytochrome b556 large membrane subunit SC0737 88 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 62179833 Pathogen - putative inner membrane protein SC1263 1 None None None 62180250 Common pspD peripheral inner membrane phage-shock protein SC1680 7 None None None 62179440 Common potF putrescine transporter subunit: periplasmic-binding component of ABC superfamily SC0870 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 62180332 Common ychP predicted invasin SC1762 14 None None None 162139519 Common fadB multifunctional fatty acid oxidation complex subunit alpha SC3880 187 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 62180076 Common mlc transcriptional repressor of ptsG and ptsHI, global repressor of carbohydrate metabolism (pts operon) (NagC/XylR family) SC1506 167 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 62179903 Common celA N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB SC1333 28 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 62182358 Common mioC flavodoxin SC3788 78 COG0716 FldA, Flavodoxins Energy production and conversion 62179395 Common glnH glutamine ABC transporter periplasmic protein SC0825 185 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62178775 Common yadS hypothetical protein SC0205 128 COG2860 COG2860, Predicted membrane protein Function unknown 162139531 Common yhhP cell developmental protein SirA SC3507 92 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 62181729 Common mug G/U mismatch-specific DNA glycosylase SC3159 29 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 62181027 Common eutG paral putative transport protein in ethanolamine utilization SC2457 174 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 62179427 Common dacC D-alanyl-D-alanine carboxypeptidase fraction C SC0857 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 62180314 Common adhE iron-dependent alcohol dehydrogenase of the multifunctional alcohol dehydrogenase AdhE SC1744 173 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 62182926 Common yjhP putative SAM-dependent methyltransferase SC4356 136 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 62180182 Common sgcA putative Sugar Specific PTS Enzyme II SC1612 42 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 62182554 Common priA primosome assembly protein PriA SC3984 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 62181419 Common ygbI putative regulatory protein, deoR family SC2849 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62182103 Common dcuB anaerobic C4-dicarboxylate transporter SC3533 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 62179117 Common tesA multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 SC0547 99 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 62181739 Common ygjQ putative integral membrane protein SC3169 45 COG2949 SanA, Uncharacterized membrane protein Function unknown 62182031 Common tub hypothetical protein SC3461 187 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62179007 Common sbcD exonuclease subunit SbcD SC0437 108 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 62179328 Common ybgS putative homeobox protein SC0758 6 None None None 62179795 Pathogen vmtU Gifsy-1 prophage VmtU SC1225 4 None None None 62180867 Common yfaO putative NTP pyrophosphohydrolase including oxidative damage repair enzyme SC2297 5 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 62182025 Common glpG predicted intramembrane serine protease SC3455 115 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 62181120 Pathogen - hypothetical protein SC2550 1 None None None 62182360 Common asnA asparagine synthetase AsnA SC3790 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 62181039 Common talA transaldolase A SC2469 187 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 62179922 Common thrS threonyl-tRNA synthetase SC1352 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62179549 Common - Gifsy-2 prophage protein SC0979 11 None None None 62180099 Common dcp dipeptidyl carboxypeptidase II SC1529 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 62182869 Common - putative inner membrane protein SC4299 11 None None None 62181677 Common yqhC putative transcriptional regulator (AraC/XylS family) SC3107 133 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62180803 Common yejB putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component SC2233 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 62181129 Common yfhK putative sensory kinase in regulatory system SC2559 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62180544 Common fliF flagellar MS-ring protein SC1974 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 62180969 Common pgtC Phosphoglycerate transport: protein for signal transmission SC2399 54 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 62182004 Common ompR osmolarity response regulator SC3434 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62179242 Common ybeB hypothetical protein SC0672 201 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 62179589 Common fabA 3-hydroxydecanoyl-(acyl carrier protein) dehydratase SC1019 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 62178621 Common citN putative citrate-sodium symport SC0051 30 COG3493 CitS, Na+/citrate symporter Energy production and conversion 62178617 Common citA putative transcription regulator, histidine kinase for citrate SC0047 162 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 62182162 Common - putative outer membrane lipoprotein SC3592 6 None None None 62178648 Pathogen cysB putative inner membrane protein SC0078 1 None None None 62179120 Common - putative outer membrane protein SC0550 10 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62179475 Common - putative cytoplasmic protein SC0905 147 COG1741 COG1741, Pirin-related protein General function prediction only 62180558 Common dsrB hypothetical protein SC1988 10 None None None 62179209 Common ahpC alkyl hydroperoxide reductase subunit C SC0639 216 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 62182750 Common dcuB anaerobic C4-dicarboxylate transporter SC4180 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 62182858 Common ppa inorganic pyrophosphatase SC4288 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 62180758 Common yohG multidrug resistance outer membrane protein MdtQ SC2188 107 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 162139540 Common yhbC hypothetical protein SC3229 179 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 162139570 Common metG methionyl-tRNA synthetase SC2170 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62180613 Common cbiA cobyrinic acid a,c-diamide synthase SC2043 136 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 62182747 Common melA alpha-galactosidase SC4177 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 62178995 Common psiF hypothetical protein SC0425 22 None None None 62178643 Common fixX putative ferredoxin, carnitine metabolism SC0073 37 COG2440 FixX, Ferredoxin-like protein Energy production and conversion 62181475 Common yqcC putative cytoplasmic protein SC2905 29 COG3098 COG3098, Uncharacterized protein conserved in bacteria Function unknown 62178968 Common mod DNA methylase; restriction system SC0398 92 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 62179045 Common apbA 2-dehydropantoate 2-reductase SC0475 108 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 62182909 Common idnO gluconate 5-dehydrogenase SC4339 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62181048 Common dapE succinyl-diaminopimelate desuccinylase SC2478 213 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 62180299 Common ykgJ putative ferredoxin SC1729 23 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 62180573 Common yeeI putative inner membrane protein SC2003 56 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 62179595 Common yccS putative efflux (PET) family transporter SC1025 59 COG1289 COG1289, Predicted membrane protein Function unknown 62179956 Common ydiI hypothetical protein SC1386 82 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 62182230 Common - putative Zn-dependent hydrolase, including glyoxylases SC3660 31 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 62181256 Common yfjF hypothetical protein SC2686 69 COG2914 COG2914, Uncharacterized protein conserved in bacteria Function unknown 62182587 Common yijD hypothetical protein SC4017 15 None None None 62178973 Pathogen - putative inner membrane protein SC0403 1 None None None 62182304 Common yidR putative cytoplasmic protein SC3734 12 COG4946 COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system Function unknown 62182971 Common - putative cytoplasmic protein SC4401 94 COG2606 EbsC, Uncharacterized conserved protein Function unknown 62181893 Common fis DNA-binding protein Fis SC3323 97 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 62178721 Common aceE pyruvate dehydrogenase subunit E1 SC0151 148 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 62181756 Common tdcG L-serine deaminase SC3186 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 62179638 Common yccJ hypothetical protein SC1068 7 None None None 62182433 Common metR regulator for metE and metH (LysR family) SC3863 183 COG0583 LysR, Transcriptional regulator Transcription 62182228 Common yicC hypothetical protein SC3658 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 62182530 Common cdh putative periplasmic protein SC3960 7 COG2134 Cdh, CDP-diacylglycerol pyrophosphatase Lipid metabolism 62180690 Pathogen - hypothetical protein SC2120 1 None None None 62178957 Pathogen - putative response regulator SC0387 4 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62182967 Common yjjB hypothetical protein SC4397 35 COG3610 COG3610, Uncharacterized conserved protein Function unknown 62181414 Common - putative nucleoside-diphosphate-sugar epimerase SC2844 122 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 62181313 Common proV glycine betaine transporter ATP-binding subunit SC2743 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 62181084 Common sinH Similar to E coli intimin and Y. pestis invasin proteins SC2514 17 None None None 62181156 Common - putative bacteriophage protein SC2586 8 None None None 62182124 Pathogen - hypothetical protein SC3554 1 None None None 62180881 Common elaB hypothetical protein SC2311 8 COG4575 ElaB, Uncharacterized conserved protein Function unknown 62182523 Common pfkA 6-phosphofructokinase SC3953 159 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 62181412 Common - putative cytoplasmic protein SC2842 9 COG4460 COG4460, Uncharacterized protein conserved in bacteria Function unknown 62178940 Common gtrA Bactoprenol-linked glucose translocase SC0370 8 COG2246 COG2246, Predicted membrane protein Function unknown 62181481 Common xni exonuclease IX SC2911 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 62181997 Common yrfF putative inner membrane protein SC3427 11 None None None 62181746 Common yqjD putative inner membrane protein SC3176 9 COG4575 ElaB, Uncharacterized conserved protein Function unknown 62182910 Common idnD L-idonate 5-dehydrogenase, NAD-binding SC4340 201 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62180699 Common yegM multidrug efflux system subunit MdtA SC2129 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 62179081 Common rpmE2 50S ribosomal protein L31 type B SC0511 102 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 62182119 Common yhjK putative Diguanylate cyclase/phosphodiesterase SC3549 166 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62179013 Common malZ maltodextrin glucosidase SC0443 157 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 62181092 Common yfgB hypothetical protein SC2522 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 62181786 Common yhbV putative protease SC3216 47 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 62182171 Common sgbH 3-keto-L-gulonate-6-phosphate decarboxylase SC3601 54 COG0269 SgbH, 3-hexulose-6-phosphate synthase and related proteins Carbohydrate transport and metabolism 62178848 Common - putative inner membrane protein SC0278 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 62181907 Common aroE shikimate 5-dehydrogenase SC3337 222 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 62179282 Common nacR putative transcriptional regulator, LysR family SC0712 181 COG0583 LysR, Transcriptional regulator Transcription 62181292 Common ygaF hypothetical protein SC2722 113 COG0579 COG0579, Predicted dehydrogenase General function prediction only 62181135 Common yfeV putative phosphotransferase system IIB components SC2565 48 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 62179539 Pathogen - Gifsy-1 prophage protein SC0969 1 None None None 62182451 Common pepQ proline dipeptidase SC3881 183 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 62182348 Common atpG F0F1 ATP synthase subunit gamma SC3778 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 62182526 Common yicJ putative permease of the Na+:galactoside symporter family SC3956 84 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62182645 Pathogen - hypothetical protein SC4075 1 None None None 62180414 Common yebS putative inner membrane protein SC1844 53 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 62180928 Common ubiX 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SC2358 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 62181326 Pathogen - hypothetical protein SC2756 1 None None None 62182038 Common glgB glycogen branching enzyme SC3468 150 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 62179553 Common regQ Gifsy-1 prophage RegQ SC0983 6 None None None 62180426 Pathogen - hypothetical protein SC1856 1 None None None 62181622 Common yggX hypothetical protein SC3052 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 62179001 Common aroM hypothetical protein SC0431 13 None None None 62180034 Common anmK anhydro-N-acetylmuramic acid kinase SC1464 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 62180305 Common cls cardiolipin synthetase SC1735 149 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 62179726 Common ycfL putative outer membrane lipoprotein SC1156 10 COG5633 COG5633, Predicted periplasmic lipoprotein General function prediction only 62182984 Common yjjI hypothetical protein SC4414 14 None None None 62181032 Common eutD phosphotransacetylase SC2462 163 COG0280 Pta, Phosphotransacetylase Energy production and conversion 62182820 Common yjfM putative inner membrane protein SC4250 5 COG5463 COG5463, Predicted integral membrane protein Function unknown 62181923 Common rpmJ 50S ribosomal protein L36 SC3353 134 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 62182199 Common yigQ putative periplasmic protein SC3629 66 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 62182853 Common msrA methionine sulfoxide reductase A SC4283 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 62181337 Common slrB glucitol/sorbitol-specific PTS system component IIA SC2767 22 COG3731 SrlB, Phosphotransferase system sorbitol-specific component IIA Carbohydrate transport and metabolism 62179760 Common intE Prophage lambda integrase (Int(Lambda)) SC1190 25 None None None 62182405 Common yifK putative transport protein YifK SC3835 114 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62179625 Common hpaH 4-hydroxyphenylacetate catabolism SC1055 63 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 62179678 Common solA N-methyltryptophan oxidase SC1108 57 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 62181145 Common era GTP-binding protein Era SC2575 228 COG1159 Era, GTPase General function prediction only 62181248 Common ffh signal recognition particle protein SC2678 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 62182297 Common yidH putative inner membrane protein SC3727 19 COG2149 COG2149, Predicted membrane protein Function unknown 62179738 Common lolD lipoprotein transporter ATP-binding subunit SC1168 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 62181380 Common sptP protein tyrosine phosphate SC2810 6 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 62179798 Pathogen vmtT Gifsy-1 prophage VmtT SC1228 3 None None None 162139594 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase SC1185 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 62180798 Common yeiR putative cobalamin synthesis protein SC2228 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 62179153 Common fimI fimbrial protein internal segment SC0583 13 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179680 Common dinI DNA damage-inducible protein I SC1110 12 None None None 62180143 Common - putative cytoplasmic protein SC1573 47 COG3791 COG3791, Uncharacterized conserved protein Function unknown 62182602 Common nusG transcription antitermination protein NusG SC4032 215 COG0250 NusG, Transcription antiterminator Transcription 62180728 Common yegU putative glycohydrolase SC2158 16 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 62182422 Pathogen - hypothetical protein SC3852 2 None None None 62181524 Common ygeA putative racemase SC2954 71 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 162139536 Common tuf elongation factor Tu SC3379 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 62183009 Common sthA putative fimbrial chaparone protein SC4439 25 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62180529 Common fliZ protein FliZ SC1959 9 None None None 62180689 Common wza putative polysaccharide export protein, outer membrane SC2119 125 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 62181104 Common hscB co-chaperone HscB SC2534 55 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 62181594 Common uxuR putative regulatory protein, gntR family SC3024 149 COG2186 FadR, Transcriptional regulators Transcription 62181424 Common int putative integrase protein SC2854 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62179971 Common pip putative hydrolase or acyltransferase SC1401 91 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 62179321 Common tolA cell envelope integrity inner membrane protein TolA SC0751 18 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 62181486 Common fucI L-fucose isomerase SC2916 19 COG2407 FucI, L-fucose isomerase and related proteins Carbohydrate transport and metabolism 62181914 Common sun 16S rRNA methyltransferase B SC3344 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 62179947 Common aroD 3-dehydroquinate dehydratase SC1377 54 COG0710 AroD, 3-dehydroquinate dehydratase Amino acid transport and metabolism 62182669 Common - aspartate kinase III SC4099 234 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 62181780 Common yhbO putative intracellular proteinase SC3210 157 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 62179157 Common fimF predicted fimbrial-like adhesin protein SC0587 12 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62180270 Common osmB lipoprotein SC1700 6 None None None 62181701 Common ygiB hypothetical protein SC3131 21 COG5463 COG5463, Predicted integral membrane protein Function unknown 62179234 Common lipB lipoyltransferase SC0664 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 62179669 Common yceK predicted lipoprotein SC1099 10 COG5645 COG5645, Predicted periplasmic lipoprotein General function prediction only 62179983 Common ssrA Secretion system regulator:Sensor component SC1413 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62180257 Common sapC ABC superfamily (membrane), peptide transport protein SC1687 212 COG4171 SapC, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 62181454 Common ygcF putative Organic radical activating enzyme SC2884 166 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 62179742 Common potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein SC1172 141 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 62179824 Common cspH cold shock protein-like protein SC1254 25 COG1278 CspC, Cold shock proteins Transcription 62181947 Common bfr bacterioferritin, iron storage and detoxification protein SC3377 107 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 62179114 Common ybbM putative YbbM family transport protein, metal resistance protein SC0544 69 COG0390 COG0390, ABC-type uncharacterized transport system, permease component General function prediction only 62180921 Common yfcH putative sugar nucleotide epimerase SC2351 105 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 62182448 Common - putative cytoplasmic protein SC3878 10 None None None 62182621 Common hupA transcriptional regulator HU subunit alpha SC4051 211 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 62179960 Common sufB cysteine desulfurase activator complex subunit SufB SC1390 184 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 62181330 Common alaS alanyl-tRNA synthetase SC2760 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62179125 Common ybbS DNA-binding transcriptional activator of the allD operon SC0555 164 COG0583 LysR, Transcriptional regulator Transcription 62181942 Common rplW 50S ribosomal protein L23 SC3372 135 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 62179749 Common - putative periplasmic protein SC1179 4 None None None 62179715 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II SC1145 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62180813 Common yejK nucleoid-associated protein NdpA SC2243 31 COG3081 COG3081, Nucleoid-associated protein General function prediction only 62180373 Pathogen - putative cytoplasmic protein SC1803 1 None None None 62182902 Common holC DNA polymerase III subunit chi SC4332 48 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 162139503 Common yjfR putative L-ascorbate 6-phosphate lactonase SC4256 27 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 62181001 Common crr glucose-specific PTS system component SC2431 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 62182386 Pathogen - hypothetical protein SC3816 2 None None None 62182570 Common gldA glycerol dehydrogenase SC4000 116 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 62182578 Common yijP hypothetical protein SC4008 51 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 62179688 Common flgN flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL SC1118 13 COG3418 COG3418, Flagellar biosynthesis/type III secretory pathway chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 62181254 Common recN recombination and repair protein SC2684 199 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 62180056 Common fumC fumarate hydratase SC1486 209 COG0114 FumC, Fumarase Energy production and conversion 62182441 Common tatA twin argininte translocase protein A SC3871 51 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 62181666 Common - putative ATP-dependent RNA helicase-like protein SC3096 3 None None None 162139604 Common cspE cold shock protein E SC0658 180 COG1278 CspC, Cold shock proteins Transcription 62180486 Common argS arginyl-tRNA synthetase SC1916 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62179452 Common artI ABC superfamily (bind_prot), arginine transport system SC0882 180 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62181365 Common sitB iron transporter: fur regulated SC2795 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 62182565 Pathogen - hypothetical protein SC3995 1 None None None 162139563 Common ypeA putative acetyltransferase SC2448 86 COG0456 RimI, Acetyltransferases General function prediction only 62179375 Common ybhL putative permease SC0805 135 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 62179619 Common hpaB 4-hydroxyphenylacetate catabolism SC1049 50 COG2368 COG2368, Aromatic ring hydroxylase Secondary metabolites biosynthesis, transport, and catabolism 62182849 Common cysQ PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase SC4279 179 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 62180668 Common - O-antigen polymerase SC2098 9 None None None 62182056 Common ugpB glycerol-3-phosphate transporter periplasmic binding protein SC3486 102 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 62182254 Common mgtB Mg2+ transport protein SC3684 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 62180959 Common sixA phosphohistidine phosphatase SC2389 56 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 62181194 Common dinI Gifsy-1 prophage DinI SC2624 12 None None None 162139504 Common aidB isovaleryl CoA dehydrogenase SC4251 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 62178682 Pathogen - hypothetical protein SC0112 1 None None None 62182191 Common yin putative mandelate racemase / muconate lactonizing enzyme family SC3621 134 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62182771 Common dipZ thiol:disulfide interchange protein precursor SC4201 115 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 62178707 Common yacG zinc-binding protein SC0137 56 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 62182013 Common yhgI predicted gluconate transport-associated protein SC3443 70 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 62179413 Common yliA glutathione transporter ATP-binding protein SC0843 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 62182990 Common lplA lipoate-protein ligase A SC4420 73 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 62182505 Common rhaD rhamnulose-1-phosphate aldolase SC3935 22 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 62179270 Pathogen - putative RNA SC0700 2 None None None 62180080 Common opcC putative periplasmic component, ABC transport system SC1510 89 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 62178604 Common nhaA pH-dependent sodium/proton antiporter SC0034 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 62182739 Common proP proline/glycine betaine transporter SC4169 149 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181760 Common tdcB threonine dehydratase SC3190 207 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 162139573 Common fliL flagellar basal body-associated protein FliL SC1980 29 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 62180980 Common ypeC putative periplasmic protein SC2410 9 None None None 62179093 Common ybaN hypothetical protein SC0523 35 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 62182003 Common envZ osmolarity sensor protein SC3433 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62180133 Common hdeB acid-resistance protein SC1563 5 None None None 62181201 Common dnaC putative replication protein SC2631 25 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 62182207 Common rfaK putative hexose transferase, lipopolysaccharide core biosynthesis SC3637 189 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62179246 Common holA DNA polymerase III subunit delta SC0676 66 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 62181161 Common - putative regulatory protein SC2591 8 None None None 62180200 Common gltL putative ABC-type polar amino acid transport system, ATPase component SC1630 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 62179609 Pathogen pipA Pathogenicity island encoded protein: SPI3 SC1039 1 None None None 62180003 Common ssaL Secretion system apparatus SsaL SC1433 5 None None None 62179238 Common rlpA rare lipoprotein A SC0668 135 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 62179259 Common rihA ribonucleoside hydrolase 1 SC0689 88 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 62180178 Common sgcX putative cellulase protein SC1608 90 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 62181850 Common sspA stringent starvation protein A SC3280 104 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62180519 Common uvrC excinuclease ABC subunit C SC1949 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 62180020 Common sodB superoxide dismutase SC1450 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 62181384 Pathogen sipA cell invasion protein SC2814 3 None None None 62180961 Common fadI 3-ketoacyl-CoA thiolase SC2391 180 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 62180165 Common ydcR putative regulatory protein, gntR family SC1595 231 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 62180207 Common acpD azoreductase SC1637 98 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 62180417 Common yebV putative cytoplasmic protein SC1847 10 None None None 62181053 Common nlpB lipoprotein SC2483 21 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 62180138 Common adhP alcohol dehydrogenase SC1568 211 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 62178790 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase SC0220 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 62180359 Common treA trehalase SC1789 27 COG1626 TreA, Neutral trehalase Carbohydrate transport and metabolism 62179042 Common phnW 2-aminoethylphosphonate transport SC0472 161 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 62179911 Common ydjN part of a kinase, putative domain shared with transporter SC1341 153 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 62182087 Common yhiN putative periplasmic protein SC3517 136 COG2081 COG2081, Predicted flavoproteins General function prediction only 62182439 Common yigP putative inner membrane protein SC3869 33 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 62181192 Common - Gifsy-2 prophage protein SC2622 11 None None None 62182534 Common ydeY putative ABC superfamily (membrane), sugar transport protein SC3964 117 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 62179063 Common hupB transcriptional regulator HU subunit beta SC0493 200 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 62179178 Common apeE outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase SC0608 19 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 62178851 Common - putative cytoplasmic protein SC0281 3 None None None 62181578 Common yggA arginine exporter protein SC3008 84 COG1279 COG1279, Lysine efflux permease General function prediction only 62179506 Common ihfB integration host factor subunit beta SC0936 203 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 62179512 Common lpxK tetraacyldisaccharide 4'-kinase SC0942 120 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 62181109 Common yfhQ putative rRNA methylase SC2539 157 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 62179808 Pathogen - hypothetical protein SC1238 1 None None None 62179930 Common btuE predicted glutathione peroxidase SC1360 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 62180127 Common pqaA PhoPQ-regulated protein SC1557 9 COG4287 PqaA, PhoPQ-activated pathogenicity-related protein General function prediction only 62180708 Pathogen - hypothetical protein SC2138 1 None None None 62181551 Common prfB peptide chain release factor RF-2 SC2981 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 62181061 Common yfgC putative inner membrane or exported SC2491 125 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 62182066 Common livJ Leu/Ile/Val/Thr-binding protein precursor SC3496 138 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 62182691 Common - putative outer membrane or exported SC4121 10 None None None 62178999 Common aroL shikimate kinase II SC0429 197 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 62178739 Common gcd glucose dehydrogenase SC0169 59 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 62182220 Common rpmG 50S ribosomal protein L33 SC3650 137 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 62182923 Pathogen - hypothetical protein SC4353 1 None None None 62182388 Common rep ATP-dependent DNA helicase Rep SC3818 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 62179047 Common yajR putative MFS family transporter SC0477 207 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181189 Common req Gifsy-2 prophage putative molecular chaperone, DnaJ family SC2619 6 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 62182510 Common rhaT DMT Superfamily, L-rhamnose:H+ symporter protein SC3940 14 COG4975 GlcU, Putative glucose uptake permease Carbohydrate transport and metabolism 62182579 Common ppc phosphoenolpyruvate carboxylase SC4009 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 62179018 Common yajC preprotein translocase subunit YajC SC0448 166 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 62181730 Common yqjH putative transporter SC3160 51 COG2375 ViuB, Siderophore-interacting protein Inorganic ion transport and metabolism 62182713 Common yjcC putative diguanylate cyclase/phosphodiesterase SC4143 163 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 62178765 Common stfA putative fimbrial subunit SC0195 15 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62180404 Common insB IS1 transposase SC1834 20 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 62179730 Common ycfP hypothetical protein SC1160 22 COG3150 COG3150, Predicted esterase General function prediction only 62181296 Common ygaE DNA-binding transcriptional regulator CsiR SC2726 117 COG1802 GntR, Transcriptional regulators Transcription 62182292 Common dsdC DNA-binding transcriptional dual regulator SC3722 174 COG0583 LysR, Transcriptional regulator Transcription 62181644 Common yhcX putative amidohydrolase SC3074 148 COG0388 COG0388, Predicted amidohydrolase General function prediction only 62182261 Common ptfB putative phosphotransferase system enzyme IIB SC3691 40 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 62181688 Common parC DNA topoisomerase IV subunit A SC3118 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 62182143 Common yhjY putative lipase SC3573 10 COG5571 COG5571, Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion Cell motility and secretion 62181352 Common hycE Formate hydrogenlyase subunit 5 precursor SC2782 197 COG3261 HycE, Ni,Fe-hydrogenase III large subunit Energy production and conversion 62181539 Common stdA putative fimbrial-like protein SC2969 20 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62181571 Common ygfE Z-ring-associated protein SC3001 45 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 62179483 Common lrp leucine-responsive transcriptional regulator SC0913 158 COG1522 Lrp, Transcriptional regulators Transcription 62178609 Common ribF bifunctional riboflavin kinase/FMN adenylyltransferase SC0039 211 COG0196 RibF, FAD synthase Coenzyme metabolism 62181680 Common sot putative cation transporter SC3110 98 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 62182460 Common dsbA periplasmic protein disulfide isomerase I SC3890 67 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 62181319 Common emrB putative MFS superfamily, multidrug transport protein SC2749 199 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180222 Common mcp putative methyl-accepting chemotaxis protein SC1652 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62181483 Common fucA L-fuculose phosphate aldolase SC2913 157 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 62182483 Common yihU putative oxidoreductase SC3913 170 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 62180778 Common yeiB hypothetical protein SC2208 50 COG2311 COG2311, Predicted membrane protein Function unknown 62180451 Common holE DNA polymerase III subunit theta SC1881 12 None None None 62181458 Common mazG nucleoside triphosphate pyrophosphohydrolase SC2888 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 62180241 Common yjgC putative transcriptional regulator, LysR family SC1671 167 COG0583 LysR, Transcriptional regulator Transcription 162139611 Common ykfJ hypothetical protein SC0315 119 COG1690 RtcB, Uncharacterized conserved protein Function unknown 62179867 Common yeaG putative Ser protein kinase SC1297 71 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 62182786 Common ecnR putative bacterial regulatory protein, luxR family SC4216 13 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62178943 Common ynfM putative permease SC0373 212 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179994 Common - Secretion system chaparone SscB SC1424 10 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 62181372 Common orgA putative inner membrane protein SC2802 5 None None None 62180334 Common chaB cation transport regulator SC1764 22 COG4572 ChaB, Putative cation transport regulator General function prediction only 62181516 Common ygdR putative POT family, peptide transport protein SC2946 14 None None None 62180769 Common yohK predicted inner membrane protein SC2199 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 62181303 Common ygaW putative inner membrane protein SC2733 13 None None None 62179631 Pathogen - hypothetical protein SC1061 1 None None None 62182218 Common coaD phosphopantetheine adenylyltransferase SC3648 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 62180827 Common ccmC ABC superfamily (membrane) heme exporter protein, cytochrome c-type biogenesis protein SC2257 124 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 62181509 Pathogen - hypothetical protein SC2939 3 None None None 62179916 Common ydiZ putative cytoplasmic protein SC1346 7 None None None 62179086 Common ybaJ hypothetical protein SC0516 10 None None None 62179962 Common sufD cysteine desulfurase activator complex subunit SufD SC1392 175 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 62180146 Common narU MFS superfamily, nitrate extrusion protein SC1576 81 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 62180664 Common manC phosphomannomutase in colanic acid gene cluster SC2094 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 62180282 Common yciN hypothetical protein SC1712 13 None None None 62180229 Common ynaI putative integral membrane protein SC1659 189 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62182041 Common gntU gluconate transporter, low affinity GNT 1 system SC3471 78 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 62182456 Common mobB molybdopterin-guanine dinucleotide biosynthesis protein B SC3886 100 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 62181726 Common rpsU 30S ribosomal protein S21 SC3156 153 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 62179542 Common - hypothetical protein SC0972 2 None None None 62179587 Common ymbA putative outer membrane protein SC1017 24 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 62181422 Common vdcC putative 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase SC2852 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 62181859 Common oadB putative oxalacetate decarboxylase, subunit beta SC3289 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 62182474 Common - putative membrane-associated, metal-dependent hydrolase SC3904 8 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 62179817 Common icdA isocitrate dehydrogenase in e14 prophage, specific for NADP+ SC1247 69 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 62180392 Common yoaE putative inner membrane protein SC1822 215 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 62182870 Common dho dihydroorotase SC4300 25 COG3964 COG3964, Predicted amidohydrolase General function prediction only 62182409 Common hemC porphobilinogen deaminase SC3839 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 62178749 Common yadE putative xylanase/chitin deacetylase SC0179 86 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 62182444 Common yigW DNase TatD SC3874 233 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 62181077 Common int site-specific recombinase, phage integrase family SC2507 66 None None None 62182698 Common aphA acid phosphatase/phosphotransferase SC4128 12 COG3700 AphA, Acid phosphatase (class B) General function prediction only 62181596 Common speA arginine decarboxylase SC3026 117 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 62179847 Common ycgE putative transcriptional regulator SC1277 13 COG0789 SoxR, Predicted transcriptional regulators Transcription 62180910 Common yfcC hypothetical protein SC2340 41 COG1288 COG1288, Predicted membrane protein Function unknown 62181070 Common yfgF putative diguanylate cyclase SC2500 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62182719 Common ywbI putative transcriptional regulator, LysR family SC4149 192 COG0583 LysR, Transcriptional regulator Transcription 62182805 Common mutL DNA mismatch repair protein SC4235 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 62182133 Common - putative PQQ enzyme repeat SC3563 20 None None None 62182548 Common menG ribonuclease activity regulator protein RraA SC3978 66 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 62178636 Common caiB crotonobetainyl-CoA:carnitine CoA-transferase SC0066 111 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 62178663 Common - putative secreted protein SC0093 56 COG1434 COG1434, Uncharacterized conserved protein Function unknown 62182564 Pathogen - hypothetical protein SC3994 1 None None None 62179038 Common phnU 2-aminoethylphosphonate transporter, memrane component SC0468 221 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 62179335 Common oadA pyruvate carboxylase subunit B SC0765 175 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 62181613 Common yggV putative deoxyribonucleotide triphosphate pyrophosphatase SC3043 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 62181347 Pathogen - putative periplasmic or exported protein SC2777 3 None None None 62181957 Common fkpA FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) SC3387 130 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 62182800 Common artJ putative arginine-binding periplasmic protein SC4230 179 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62180159 Common ydcY putative cytoplasmic protein SC1589 6 None None None 62180760 Pathogen - putative cytoplasmic protein SC2190 1 None None None 62182101 Common rbsK ribokinase SC3531 187 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62182681 Common malM maltose regulon periplasmic protein SC4111 17 None None None 62178587 Pathogen - hypothetical protein SC0017 3 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62178898 Common - hypothetical protein SC0328 12 COG1479 COG1479, Uncharacterized conserved protein Function unknown 62179384 Common ybhF putative ABC-type multidrug transport system, ATPase component SC0814 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 62179106 Common ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor SC0536 139 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 62180186 Common gox putative oxidase SC1616 115 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 62181864 Common - putative cation transporter SC3294 192 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 62182326 Common dnaA chromosomal replication initiation protein SC3756 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 62182894 Common argI ornithine carbamoyltransferase subunit I SC4324 238 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 62182883 Common yjgF putative translation initiation inhibitor SC4313 185 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 62179056 Common ampG muropeptide transporter SC0486 109 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181969 Common yhfA hypothetical protein SC3399 86 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 62179115 Common ybbN paral putative thioredoxin protein SC0545 213 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 62179750 Common ycfD putative cytoplasmic protein SC1180 58 COG2850 COG2850, Uncharacterized conserved protein Function unknown 62179202 Common ybdD putative cytoplasmic protein SC0632 28 COG2879 COG2879, Uncharacterized small protein Function unknown 62180480 Common yecD hypothetical protein SC1910 125 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 62182241 Common yicE putative NCS2 family, purine/xanthine transport protein SC3671 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 62178709 Common coaE dephospho-CoA kinase SC0139 203 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 62182670 Common pgi glucose-6-phosphate isomerase SC4100 198 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 62181983 Common trpS tryptophanyl-tRNA synthetase SC3413 234 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62182730 Common nrfE formate-dependent nitrite reductase; involved in attachment of haem c to cytochrome c552 SC4160 111 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 62179757 Common - putative periplasmic protein SC1187 19 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 62181124 Common cadA lysine decarboxylase 1 SC2554 88 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 62179654 Common ycdX putative hydrolase SC1084 35 COG1387 HIS2, Histidinol phosphatase and related hydrolases of the PHP family Amino acid transport and metabolism / General function prediction only 62179075 Common glnK regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) SC0505 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 62180320 Common ychJ hypothetical protein SC1750 88 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 62181434 Common ygbE hypothetical protein SC2864 10 None None None 62182516 Common sodA superoxide dismutase SC3946 207 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 62180443 Common int hypothetical protein SC1873 10 None None None 62180495 Common cheR chemotaxis regulator, protein-glutamate methyltransferase SC1925 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 62180674 Common wcaJ putative UDP-glucose lipid carrier transferase SC2104 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 62180518 Common pgsA phosphatidylglycerophosphate synthetase SC1948 203 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 162139583 Common hrpA ATP-dependent RNA helicase HrpA SC1636 134 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 62178575 Common yaaA hypothetical protein SC0005 89 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 62179180 Common ybdF hypothetical protein SC0610 35 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 62180377 Common minC septum formation inhibitor SC1807 92 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 62180554 Common fliP flagellar biosynthesis protein FliP SC1984 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 62180985 Common yfeD putative negative regulator SC2415 6 None None None 62182674 Common yjbH putative outer membrane lipoprotein SC4104 23 None None None 62178655 Common ksgA dimethyladenosine transferase SC0085 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 62182336 Common yieH predicted hydrolase SC3766 109 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 62179873 Common gapA glyceraldehyde-3-phosphate dehydrogenase SC1303 220 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 62181409 Pathogen tnpA hypothetical protein SC2839 1 None None None 62180243 Common ycjI murein peptide amidase A SC1673 19 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 62180571 Common umuD DNA polymerase V subunit UmuD SC2001 152 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 62180061 Pathogen - hypothetical protein SC1491 1 None None None 62178700 Common ftsZ cell division protein FtsZ SC0130 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 62179939 Common ydiD short chain acyl-CoA synthetase SC1369 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62181734 Pathogen - hypothetical protein SC3164 1 None None None 62182238 Common recG ATP-dependent DNA helicase RecG SC3668 210 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 62178850 Pathogen - putative periplasmic protein SC0280 1 COG4893 COG4893, Uncharacterized protein conserved in bacteria Function unknown 62182415 Common yifL putative outer membrane lipoprotein SC3845 7 COG5567 COG5567, Predicted small periplasmic lipoprotein Cell motility and secretion 62180280 Common cysB transcriptional regulator CysB SC1710 186 COG0583 LysR, Transcriptional regulator Transcription 62179171 Common ykgC pyridine nucleotide-disulfide oxidoreductase SC0601 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 62181402 Pathogen invH invasion protein SC2832 1 None None None 62182948 Pathogen - putative inner membrane protein SC4378 1 None None None 62181275 Common iroC putative ATP binding cassette (ABC) transporter SC2705 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 62180899 Pathogen - putative cytoplasmic protein SC2329 1 None None None 62178593 Common bcfE fimbrial subunit SC0023 15 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179578 Pathogen - Gifsy-2 prophage protein SC1008 1 None None None 62182185 Common dspP putative inner membrane protein SC3615 117 COG5295 Hia, Autotransporter adhesin Intracellular trafficking and secretion / Extracellular structures 62178985 Common yaiV putative DNA-binding transcriptional regulator SC0415 7 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 62181467 Common rumA 23S rRNA 5-methyluridine methyltransferase SC2897 203 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 62180923 Common hisM ABC superfamily (membrane),histidine and lysine/arginine/ornithine transport protein SC2353 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 62181462 Common stfE putaive minor fimbrial subunit SC2892 8 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62180912 Common tktN putative transketolase SC2342 221 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 62180823 Common ccmG heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis SC2253 115 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 62182581 Common argC N-acetyl-gamma-glutamyl-phosphate reductase SC4011 216 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 62180871 Common yfbH putative cytoplasmic protein SC2301 19 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 62181147 Common lepB lsignal peptidase I SC2577 199 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 62183005 Common creD hypothetical protein SC4435 29 COG4452 CreD, Inner membrane protein involved in colicin E2 resistance Defense mechanisms 62179801 Common vmtL Gifsy-1 prophage VmtL SC1231 14 COG4672 gp18, Phage-related protein Function unknown 62180379 Common minE cell division topological specificity factor MinE SC1809 82 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 62179373 Common moaD molybdopterin synthase small subunit SC0803 82 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 62178876 Pathogen - hypothetical protein SC0306 1 None None None 62182659 Common mac putative methyl-accepting chemotaxis protein SC4089 8 COG3499 COG3499, Phage protein U General function prediction only 62180876 Common menC O-succinylbenzoate synthase SC2306 72 COG1441 MenC, O-succinylbenzoate synthase Coenzyme metabolism 62181208 Common recE Gifsy-1 prophage RecE SC2638 10 None None None 62181836 Common arcB aerobic respiration control sensor protein ArcB SC3266 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62179465 Common ybjX Homolog of virK SC0895 21 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 62179492 Common ycaD putative MFS family transporter protein SC0922 108 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 62181214 Common rseA anti-RNA polymerase sigma factor SigE SC2644 32 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 62179291 Common speF ornithine decarboxylase isozyme, inducible SC0721 83 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 62180946 Common ner putatiave helix-turn-helix regulatory protein SC2376 26 COG3423 Nlp, Predicted transcriptional regulator Transcription 62179878 Common ydjK Hypothetical metabolite transport protein ydjK SC1308 126 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62182294 Common dsdA D-serine dehydratase SC3724 38 COG3048 DsdA, D-serine dehydratase Amino acid transport and metabolism 62179423 Common TnpR transposase of Tn10 SC0853 19 None None None 62180386 Common yoaB putative translation initiation inhibitor SC1816 103 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 62181460 Common steB outer membrane usher protein SC2890 33 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62178724 Pathogen - putative outer membrane protein SC0154 2 None None None 62180311 Common oppB oligopeptide transporter permease SC1741 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62181046 Common acrD aminoglycoside/multidrug efflux system SC2476 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 62179565 Common vmtM Gifsy-2 prophage probable minor tail protein SC0995 13 COG4718 COG4718, Phage-related protein Function unknown 62182664 Common - putative cytoplasmic protein SC4094 6 None None None 62181925 Common rplO 50S ribosomal protein L15 SC3355 70 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 62178610 Common ileS isoleucyl-tRNA synthetase SC0040 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62178965 Common hmrR putative transcriptional regulator SC0395 130 COG0789 SoxR, Predicted transcriptional regulators Transcription 62179673 Common yceA hypothetical protein SC1103 133 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 62179527 Common asnC asparaginyl-tRNA synthetase SC0957 231 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 62180013 Common ssaU secretion system apparatus protein SsaU SC1443 129 COG4792 EscU, Type III secretory pathway, component EscU Intracellular trafficking and secretion 62179776 Common - hypothetical protein SC1206 4 None None None 62182497 Common fdhD formate dehydrogenase accessory protein SC3927 135 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 62181633 Common arsR putative arylsulfatase regulator SC3063 84 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 62180977 Common yfeO hypothetical protein SC2407 9 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 62180851 Common nrdB ribonucleotide-diphosphate reductase subunit beta SC2281 154 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 62178689 Common ftsI division specific transpeptidase, penicillin-binding protein 3 re SC0119 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 62182723 Common yjcH putative inner membrane protein SC4153 41 COG3162 COG3162, Predicted membrane protein Function unknown 62181329 Common csrA carbon storage regulator SC2759 81 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 62181017 Common yfeZ putative inner membrane protein SC2447 12 None None None 62180992 Common yfeR putative transcriptional regulator, LysR family SC2422 192 COG0583 LysR, Transcriptional regulator Transcription 62182367 Common rbsB D-ribose transporter subunit RbsB SC3797 134 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 62180487 Common pbpA putative penicillin-binding protein SC1917 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 62181023 Common eutR transcriptional regulator EutR SC2453 54 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62178903 Common - Orf-235-like protein SC0333 10 COG4712 COG4712, Uncharacterized protein conserved in bacteria Function unknown 62180738 Common yehE putative outer membrane protein SC2168 4 None None None 62180471 Common znuB high-affinity zinc transporter membrane component SC1901 173 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 62181970 Common crp cAMP-regulatory protein SC3400 170 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 62182178 Common yibF predicted glutathione S-transferase SC3608 76 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62179173 Common ykgB putative inner membrane protein SC0603 26 COG3059 COG3059, Predicted membrane protein Function unknown 62182556 Common - putative cytoplasmic protein SC3986 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181705 Common - hypothetical protein SC3135 3 None None None 62182116 Common kdgK ketodeoxygluconokinase SC3546 150 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62179369 Common ybhK putative cytoplasmic protein SC0799 92 COG0391 COG0391, Uncharacterized conserved protein Function unknown 62180461 Common zwf glucose-6-phosphate 1-dehydrogenase SC1891 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 62179580 Common pepN aminopeptidase N SC1010 161 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 62179623 Common hpaD 4-hydroxyphenylacetate catabolism SC1053 25 COG3384 COG3384, Uncharacterized conserved protein Function unknown 62182027 Common glpD glycerol-3-phosphate dehydrogenase SC3457 147 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 62179463 Common ybjE putative inner membrane protein SC0893 49 COG2431 COG2431, Predicted membrane protein Function unknown 62178868 Pathogen - hypothetical protein SC0298 1 None None None 62180615 Common pduF Propanediol utilization: propanediol diffusion facilitator SC2045 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 62178666 Common araA L-arabinose isomerase SC0096 36 COG2160 AraA, L-arabinose isomerase Carbohydrate transport and metabolism 62182067 Common rpoH RNA polymerase factor sigma-32 SC3497 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 62180900 Common lrhA NADH dehydrogenase transcriptional repressor (LysR family) SC2330 129 COG0583 LysR, Transcriptional regulator Transcription 62179305 Common abrB putative transport protein SC0735 45 COG3180 AbrB, Putative ammonia monooxygenase General function prediction only 62179928 Common ihfA integration host factor subunit alpha SC1358 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 62181500 Common argA N-acetylglutamate synthase SC2930 201 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 62182369 Common rbsR transcriptional repressor RbsR SC3799 129 COG1609 PurR, Transcriptional regulators Transcription 62179621 Common hpaG 4-hydroxyphenylacetate catabolism SC1051 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 62180236 Pathogen - putative cytoplasmic protein SC1666 1 None None None 62182704 Common ssb single-strand DNA-binding protein SC4134 213 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 62180540 Common yedF hypothetical protein SC1970 30 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 62179885 Common pncA nicotinamidase/pyrazinamidase SC1315 109 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 62180384 Common yeaZ putative molecular chaperone SC1814 173 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 62179421 Common acdC putative acyl-CoA dehydrogenase SC0851 157 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 62182528 Common yegU putative ADP-ribosylglycohydrolase SC3958 21 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 62180346 Common ychH predicted inner membrane protein SC1776 10 None None None 62182974 Common yjjZ putative inner membrane protein SC4404 9 None None None 62181270 Common - hypothetical protein SC2700 20 COG4271 COG4271, Predicted nucleotide-binding protein containing TIR -like domain Transcription 62182092 Common yhiQ putative methyltransferase SC3522 54 None None None 62182899 Common yjgM putative acetyltransferase SC4329 61 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 62182746 Common melR DNA-binding transcriptional dual regulator SC4176 43 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62180086 Common ynfE putative dimethyl sulphoxide reductase, chain A1 SC1516 184 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62181963 Common yheS putative ABC transporter ATP-binding protein SC3393 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 62179905 Common celC N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA SC1335 32 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 62181675 Common metC cystathionine beta-lyase SC3105 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 62180685 Common wcaB putative colanic acid biosynthesis acetyltransferase WcaB SC2115 195 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 62181826 Common yhbN hypothetical protein SC3256 66 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 62180880 Common menF menaquinone-specific isochorismate synthase SC2310 219 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62179274 Common nagA N-acetylglucosamine-6-phosphate deacetylase SC0704 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 62181664 Common mcp1 putative methyl-accepting chemotaxis protein SC3094 145 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62182164 Pathogen yiaB putative inner membrane protein SC3594 2 COG4682 COG4682, Predicted membrane protein Function unknown 62180150 Common nhoA putative arylamine N-acetyltransferase SC1580 6 COG2162 NhoA, Arylamine N-acetyltransferase Secondary metabolites biosynthesis, transport, and catabolism 62181239 Common pheA bifunctional chorismate mutase/prephenate dehydratase SC2669 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 62179244 Common cobD threonine-phosphate decarboxylase SC0674 228 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 62178646 Pathogen - putative secreted protein SC0076 1 None None None 62181912 Common def peptide deformylase SC3342 215 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 62179767 Common ymfL hypothetical protein SC1197 4 None None None 62181370 Pathogen - putative cytoplasmic protein SC2800 2 None None None 62180864 Common yfaW paral putative galactonate dehydratase SC2294 96 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62179223 Common citC citrate lyase synthetase (citrate (pro-3S)-lyase ligase SC0653 25 COG3053 CitC, Citrate lyase synthetase Energy production and conversion 62182666 Common lmt putative soluble lytic murein transglycosylase SC4096 26 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 62180184 Common sgcR putative transcriptional repressor of sgc operon (DeoR family) SC1614 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62182187 Common lldR DNA-binding transcriptional repressor SC3617 130 COG2186 FadR, Transcriptional regulators Transcription 62179477 Common infA translation initiation factor IF-1 SC0907 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 62181959 Common slyD FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) SC3389 125 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 62181674 Common yis2 putative integrase protein SC3104 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181930 Common rpsH 30S ribosomal protein S8 SC3360 242 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 62179303 Common ybgL hypothetical protein SC0733 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 62179442 Common potH putrescine transporter subunit: membrane component of ABC superfamily SC0872 193 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 62181110 Common suhB inositol monophosphatase SC2540 217 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 62180643 Common phsB Hydrogen sulfide production: iron- sulfur subunit; electron transfer SC2073 167 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62179617 Common yedX putative periplasmic or exported protein SC1047 64 COG2351 COG2351, Transthyretin-like protein General function prediction only 162139558 Common rpsP 30S ribosomal protein S16 SC2677 212 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 62181775 Common yraM paral putative transglycosylase SC3205 40 COG3107 LppC, Putative lipoprotein General function prediction only 62180014 Common ydhE multidrug efflux protein SC1444 175 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 62180589 Pathogen - hypothetical protein SC2019 5 None None None 62180650 Common yeeZ putative dehydratase SC2080 96 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 62180533 Pathogen - hypothetical protein SC1963 1 None None None 62179266 Common ybeY hypothetical protein SC0696 204 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 62180909 Common pta phosphate acetyltransferase SC2339 171 COG0280 Pta, Phosphotransacetylase Energy production and conversion 62182969 Pathogen - hypothetical protein SC4399 1 None None None 62182331 Common yidY multidrug efflux system protein MdtL SC3761 223 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180106 Common marB hypothetical protein SC1536 6 None None None 62181887 Common accB acetyl-CoA carboxylase biotin carboxyl carrier protein subunit SC3317 192 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 62180556 Common fliR flagellar biosynthesis protein FliR SC1986 119 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 62179838 Common oxd6B putative ABC transporter SC1268 213 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62181175 Common - putative bacteriophage protein SC2605 16 COG4834 COG4834, Uncharacterized protein conserved in bacteria Function unknown 62182055 Common ugpA glycerol-3-phosphate transporter permease SC3485 149 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 62180368 Common fadR fatty acid metabolism regulator SC1798 66 COG2186 FadR, Transcriptional regulators Transcription 62178677 Common leuC isopropylmalate isomerase large subunit SC0107 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 62179978 Common ttrR Tetrathionate reductase complex: response regulator SC1408 202 COG4566 TtrR, Response regulator Signal transduction mechanisms 62181279 Pathogen - putative inner membrane protein SC2709 1 None None None 62180394 Common manX Sugar Specific PTS family, mannose-specific enzyme IIAB SC1824 90 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 162139528 Common dfp bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase SC3653 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 62182395 Common wecB UDP-N-acetyl glucosamine -2-epimerase SC3825 156 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 62180563 Common yedA hypothetical protein SC1993 71 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 62181322 Common luxS S-ribosylhomocysteinase SC2752 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 62180116 Pathogen - hypothetical protein SC1546 1 None None None 62179812 Common - hypothetical protein SC1242 22 COG3617 COG3617, Prophage antirepressor Transcription 62182802 Common yjeF hypothetical protein SC4232 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 62182580 Common argE acetylornithine deacetylase SC4010 177 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 62180104 Common ydeE putative MFS-type transporter YdeE SC1534 41 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180811 Common rplY 50S ribosomal protein L25 SC2241 137 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 62181879 Common maf Maf-like protein SC3309 197 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 62182032 Common yagE putative dihydrodipicolinate synthetase SC3462 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 62182611 Common thiH thiamine biosynthesis protein ThiH SC4041 57 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 62179284 Common fldA flavodoxin FldA SC0714 74 COG0716 FldA, Flavodoxins Energy production and conversion 62180580 Pathogen - hypothetical protein SC2010 1 None None None 62182765 Common yggM putative periplasmic protein SC4195 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 62181063 Common yfgE DNA replication initiation factor SC2493 163 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 62179394 Common glnP glutamine ABC transporter permease protein SC0824 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 62179217 Common citT DASS family, citrate:succinate transport (antiport) protein SC0647 107 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 62181333 Common ygaD competence damage-inducible protein A SC2763 192 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 62182933 Common trpS2 tryptophanyl-tRNA synthetase II SC4363 238 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62182981 Common yjjU putative phosphoesterase SC4411 41 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 62179185 Common entD phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex SC0615 28 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 62182196 Common yibN putative Rhodanese-related sulfurtransferase SC3626 102 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 62180952 Common yfcL putative cytoplasmic protein SC2382 17 None None None 62179204 Common ybdL putative aminotransferase SC0634 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 62181840 Common yhcG putative cytoplasmic protein SC3270 50 COG4804 COG4804, Uncharacterized conserved protein Function unknown 62181698 Common yqiB putative cytoplasmic protein SC3128 26 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 62180792 Common fruF fructose-specific PTS IIA/HPr components SC2222 117 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 62179959 Common sufA iron-sulfur cluster assembly scaffold protein SC1389 162 COG0316 IscA, Uncharacterized conserved protein Function unknown 62178934 Common - TPA: injection protein SC0364 4 None None None 62181379 Common iagB cell invasion protein SC2809 32 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 62181263 Common - putative outer membrane efflux protein SC2693 109 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62179685 Common rimJ ribosomal-protein-S5-alanine N-acetyltransferase SC1115 91 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 162139523 Common atpI F0F1 ATP synthase subunit I SC3784 12 COG3312 AtpI, F0F1-type ATP synthase, subunit I Energy production and conversion 62179921 Common nucA putative DNA/RNA non-specific endonuclease SC1351 33 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 62182892 Pathogen - hypothetical protein SC4322 1 None None None 62181562 Common bglA 6-phospho-beta-glucosidase A SC2992 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 62181491 Common ygdD hypothetical protein SC2921 70 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 62180363 Common ldcA L,D-carboxypeptidase A SC1793 80 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 62180776 Common mglB ABC superfamily (peri_perm), galactose transport protein SC2206 90 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 62180853 Common - putative permease SC2283 136 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181034 Common eutQ putative ethanolamine utilization protein SC2464 19 COG4766 EutQ, Ethanolamine utilization protein Amino acid transport and metabolism 62181545 Common - putative periplasmic protein SC2975 5 None None None 62181585 Common - putative ABC-type cobalt transport system, permease component CbiQ and related transporter SC3015 20 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 62182247 Common rmbA putative cytoplasmic protein SC3677 4 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 162139599 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase SC0791 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 62181137 Common yfhH putative DNA-binding transcriptional regulator SC2567 163 COG1737 RpiR, Transcriptional regulators Transcription 62182413 Common - possible exported protein SC3843 3 None None None 62180167 Pathogen - putative inner membrane protein SC1597 1 None None None 62181928 Common rplR 50S ribosomal protein L18 SC3358 209 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 62178685 Common fruR DNA-binding transcriptional regulator FruR SC0115 122 COG1609 PurR, Transcriptional regulators Transcription 62179721 Common holB DNA polymerase III subunit delta' SC1151 194 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 62180522 Pathogen - putative inner membrane protein SC1952 1 None None None 62182640 Pathogen - putative cytoplasmic protein SC4070 1 None None None 62180260 Common ydiV hypothetical protein SC1690 9 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62182796 Common yjeP predicted mechanosensitive channel SC4226 181 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62182355 Pathogen - hypothetical protein SC3785 1 None None None 62179323 Common pal peptidoglycan-associated outer membrane lipoprotein SC0753 148 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 62181229 Common kgtP alpha-ketoglutarate transporter SC2659 128 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182736 Common phnO aminoalkylphosphonic acid N-acetyltransferase SC4166 50 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 62182277 Common yicN putative inner membrane protein SC3707 8 None None None 62180726 Common fbaB fructose-bisphosphate aldolase SC2156 69 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 62179831 Pathogen - hypothetical protein SC1261 1 None None None 62180272 Common pyrF orotidine 5'-phosphate decarboxylase SC1702 163 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 62180865 Common yfaX putative transcriptional regulator SC2295 117 COG1414 IclR, Transcriptional regulator Transcription 62179945 Common ydiO putative acyl-CoA dehydrogenase SC1375 157 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 62182424 Common rarD chloramphenicol resistance SC3854 110 COG2962 RarD, Predicted permeases General function prediction only 62179876 Pathogen - hypothetical protein SC1306 3 COG3325 ChiA, Chitinase Carbohydrate transport and metabolism 62182145 Common yiaC hypothetical protein SC3575 57 COG0456 RimI, Acetyltransferases General function prediction only 62179894 Common xthA exonuclease III SC1324 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 62181429 Common surE stationary phase survival protein SurE SC2859 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 62179485 Common lolA outer-membrane lipoprotein carrier protein SC0915 70 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 62178914 Common rusA endodeoxyribonuclease RUS SC0344 7 COG4570 Rus, Holliday junction resolvase DNA replication, recombination, and repair 62180042 Common ydgQ SoxR-reducing system protein RsxE SC1472 76 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 62181882 Common mreB Rod shape-determining protein mreB SC3312 234 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 62181620 Common trmB tRNA (guanine-N(7))-methyltransferase SC3050 177 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 62182604 Common rplA 50S ribosomal protein L1 SC4034 243 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 62181722 Common uppP undecaprenyl pyrophosphate phosphatase SC3152 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 62181522 Common lysA diaminopimelate decarboxylase SC2952 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 62181488 Common fucU conserved protein of fucose operon SC2918 32 COG4154 FucU, Fucose dissimilation pathway protein FucU Carbohydrate transport and metabolism 62181261 Common amyH large repetitive protein SC2691 170 None None None 62180371 Common yeaR putative cytoplasmic protein SC1801 19 COG3615 TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance Inorganic ion transport and metabolism 62181782 Common yhbQ hypothetical protein SC3212 73 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 62180633 Pathogen - hypothetical protein SC2063 1 None None None 62182632 Common aceB malate synthase SC4062 82 COG2225 AceB, Malate synthase Energy production and conversion 62180967 Common pgtA Phosphoglycerate transport: activator SC2397 169 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 62179151 Common folD bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase SC0581 223 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 162139601 Common modF putative molybdenum transport ATP-binding protein ModF SC0776 249 COG1119 ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA Inorganic ion transport and metabolism 62181099 Pathogen - putative cytoplasmic protein SC2529 2 None None None 62179191 Common fepC iron-enterobactin transporter ATP-binding protein SC0621 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 62182060 Common livG leucine/isoleucine/valine transporter ATP-binding subunit SC3490 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 62179163 Common yfdH putative glycosyltransferase SC0593 176 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62182071 Common yhhF predicted methyltransferase SC3501 202 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 62179112 Common ybbK putative inner membrane protein SC0542 220 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 62178801 Common dnaE DNA polymerase III subunit alpha SC0231 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 62178678 Common leuB 3-isopropylmalate dehydrogenase SC0108 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 62179411 Common moeA molybdopterin biosynthesis protein MoeA SC0841 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 62181514 Common mutH DNA mismatch repair protein SC2944 28 COG3066 MutH, DNA mismatch repair protein DNA replication, recombination, and repair 62181496 Common rarD putative integral membrane protein SC2926 112 COG2962 RarD, Predicted permeases General function prediction only 62178712 Common hofB hypothetical protein SC0142 223 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 62182152 Common - putative periplasmic or exported protein SC3582 8 None None None 62181367 Common sitD iron transporter: fur regulated SC2797 183 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 62180520 Common sirA response regulator SC1950 212 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62179740 Common ycfX N-acetyl-D-glucosamine kinase SC1170 134 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 62181005 Common yfeJ glutamine amidotransferase SC2435 104 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 62179713 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase SC1143 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62182343 Common yabN putative dipeptide/oligopeptide/nickel ABC-type transport systems, periplasmic component SC3773 91 COG4533 COG4533, ABC-type uncharacterized transport system, periplasmic component General function prediction only 62178880 Common fadE acyl-CoA dehydrogenase SC0310 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 162139517 Common yiiM hypothetical protein SC3947 77 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 62180252 Common pspB phage shock protein B SC1682 22 None None None 62181870 Common - putative periplasmic protein SC3300 8 None None None 62182503 Common yiiL putative cytoplasmic protein SC3933 38 COG3254 COG3254, Uncharacterized conserved protein Function unknown 62179379 Common ybhO cardiolipin synthase 2 SC0809 146 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 62180498 Common cheA chemotaxis protein CheA SC1928 154 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 62181320 Common - putative glycoporin SC2750 12 None None None 62182847 Common ytfH putative transcriptional regulator SC4277 141 COG1733 COG1733, Predicted transcriptional regulators Transcription 62182572 Common ptsA General PTS family, enzyme I SC4002 230 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 62179641 Pathogen - hypothetical protein SC1071 3 None None None 162139606 Common ybcJ hypothetical protein SC0580 30 COG2501 COG2501, Uncharacterized conserved protein Function unknown 62179435 Common ybjM putative inner membrane protein SC0865 8 None None None 162139561 Common xseA exodeoxyribonuclease VII large subunit SC2510 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 62182226 Common pyrE orotate phosphoribosyltransferase SC3656 157 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 62181386 Pathogen sipC cell invasion protein SC2816 4 None None None 62182169 Common malS alpha-amylase SC3599 14 None None None 62179101 Common hemH ferrochelatase SC0531 161 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 62182015 Common malQ 4-alpha-glucanotransferase SC3445 120 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 62179636 Common - Suppression of copper sensitivity: lipoprotein modification in lgt mutants of E coli SC1066 75 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 62180205 Common ydcF putative inner membrane protein SC1635 10 COG1434 COG1434, Uncharacterized conserved protein Function unknown 62181259 Common - large repetitive protein SC2689 5 None None None 62182157 Common yafP putative acetyltransferase SC3587 48 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 62182855 Common ytfN putative periplasmic protein SC4285 95 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 62181086 Common engA GTP-binding protein EngA SC2516 229 COG1160 COG1160, Predicted GTPases General function prediction only 62180424 Common - hypothetical protein SC1854 3 None None None 62180120 Common hoxQ putative hydrogenase SC1550 85 COG1773 COG1773, Rubredoxin Energy production and conversion 62179590 Common lonH putative protease SC1020 124 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 62182122 Common yhjU putative inner membrane protein SC3552 18 None None None 62181154 Common - putative bacteriophage protein SC2584 10 None None None 62180297 Common ctjC putative catalase SC1727 47 COG3546 COG3546, Mn-containing catalase Inorganic ion transport and metabolism 62180458 Common purT phosphoribosylglycinamide formyltransferase 2 SC1888 194 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 62179823 Common envE putative envelope protein SC1253 7 None None None 62182823 Common yjfO putative lipoprotein SC4253 9 None None None 62182375 Common yifE hypothetical protein SC3805 23 COG3085 COG3085, Uncharacterized protein conserved in bacteria Function unknown 62178815 Common yaeE DL-methionine transporter permease subunit SC0245 206 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 62181905 Common yrdA putative ferripyochelin binding protein SC3335 191 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 62178951 Common stbC putative fimbriae; usher SC0381 37 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62181311 Common nrdE ribonucleotide-diphosphate reductase subunit alpha SC2741 221 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 62181532 Common yohL putative cytoplasmic protein SC2962 72 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 62178664 Pathogen - putative cytoplasmic protein SC0094 1 None None None 62181416 Common ygbL putative aldolase SC2846 110 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 62179597 Common helD DNA helicase IV SC1027 227 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 62180340 Common prfA peptide chain release factor 1 SC1770 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 62181473 Common yqcA flavodoxin SC2903 65 COG0716 FldA, Flavodoxins Energy production and conversion 62178882 Common yafJ putative glutamine amidotransferase SC0312 73 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 62181899 Pathogen - hypothetical protein SC3329 1 None None None 62179537 Pathogen - Gifsy-1 prophage protein SC0967 2 None None None 62179340 Common gpmA phosphoglyceromutase SC0770 163 COG0588 GpmA, Phosphoglycerate mutase 1 Carbohydrate transport and metabolism 62179691 Common flgB flagellar basal body rod protein FlgB SC1121 99 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 62181788 Common yafK putative inner membrane protein SC3218 49 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 62182957 Common - putative PTS permease SC4387 56 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 62181796 Common rbfA ribosome-binding factor A SC3226 172 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 62178589 Common yaiV putative cytoplasmic protein SC0019 7 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 62179011 Common brnQ LIVCS family, branched chain amino acid transporter system II (LIV-II) SC0441 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 62181094 Common - putative polyferredoxin SC2524 4 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 62180259 Common sapF ABC superfamily (atp-binding), peptide transport protein SC1689 249 COG4167 SapF, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 62181389 Common spaS surface presentation of antigens protein SpaS SC2819 127 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 62181637 Common - putative cytoplasmic protein SC3067 6 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 62180083 Common ynfH putative dimethylsulfoxide reductase SC1513 29 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 62179155 Common fimD outer membrane usher protein SC0585 32 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62179950 Common ydiM putative MFS family transport protein SC1380 73 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181553 Common dsbC thiol:disulfide interchange protein DsbC SC2983 67 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 62182403 Common wecF putative enterobacterial common antigen polymerase SC3833 13 None None None 62178845 Common - hypothetical protein SC0275 146 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 62179646 Common putP SSS family, major sodium/proline symporter SC1076 175 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 62179559 Pathogen - hypothetical protein SC0989 1 None None None 62178580 Common htgA hypothetical protein SC0010 8 COG4735 COG4735, Uncharacterized protein conserved in bacteria Function unknown 62180439 Pathogen - putative DNA-binding protein SC1869 3 None None None 62182647 Pathogen - putative inner membrane protein SC4077 2 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 62180238 Common yjgJ putative bacterial regulatory helix-turn-helix proteins, araC family SC1668 75 COG1309 AcrR, Transcriptional regulator Transcription 62179663 Common csgC putative curli production protein SC1093 5 None None None 62180784 Common uhpC putative regulatory protein SC2214 139 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62178798 Common lpxA UDP-N-acetylglucosamine acyltransferase SC0228 154 COG1043 LpxA, Acyl- acyl carrier protein 62180606 Common cbiG cobalamin biosynthesis protein CbiG SC2036 93 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 62181889 Common yhdT hypothetical protein SC3319 18 COG3924 COG3924, Predicted membrane protein Function unknown 62181629 Common maoC putative monoamine oxidase SC3059 78 COG2030 MaoC, Acyl dehydratase Lipid metabolism 62181222 Common ung uracil-DNA glycosylase SC2652 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 62178773 Common yadQ chloride channel protein SC0203 148 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 62182197 Common pmgI phosphoglyceromutase SC3627 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 62179762 Pathogen - hypothetical protein SC1192 1 None None None 62179676 Pathogen - hypothetical protein SC1106 1 None None None 62181754 Common yhaN putative inner membrane protein SC3184 35 COG3681 COG3681, Uncharacterized conserved protein Function unknown 62181339 Common gutM DNA-binding transcriptional activator of glucitol operon SC2769 12 COG4578 GutM, Glucitol operon activator Transcription 62180195 Pathogen tfpB putative inner membrane protein SC1625 4 None None None 62182097 Common csbX Alpha-ketoglutarate permease SC3527 42 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180054 Common manA mannose-6-phosphate isomerase SC1484 41 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 62182912 Common yjgB putative alcohol dehydrogenase SC4342 188 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 62181759 Common tdcC HAAAP family, L-threonine/ L-serine permease, anaerobically inducible SC3189 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62179705 Common - putative inner membrane lipoprotein SC1135 11 None None None 62179203 Common ybdH putative glycerol dehydrogenase SC0633 64 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 62181736 Common fadH 2,4-dieonyl-coa reductase SC3166 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 62181358 Common hypB hydrogenase nickel incorporation protein HypB SC2788 117 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 62182499 Common yiiG putative cytoplasmic protein SC3929 9 None None None 62180944 Common yfcJ hypothetical protein SC2374 115 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181449 Common cysJ sulfite reductase subunit alpha SC2879 97 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 62179891 Common gdhA glutamate dehydrogenase SC1321 173 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 62181300 Common ygaP putative rhodanese-related sulfurtransferase SC2730 65 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 62180890 Common nuoJ NADH dehydrogenase subunit J SC2320 139 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 62180736 Common stcB putative periplasmic chaperone protein SC2166 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62179025 Common yajI hypothetical protein SC0455 9 None None None 62179563 Pathogen - Gifsy-2 prophage probable minor tail protein SC0993 3 None None None 162139529 Common yhjW phosphoethanolamine transferase SC3567 63 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 62179898 Common astE succinylglutamate desuccinylase SC1328 25 COG2988 COG2988, Succinylglutamate desuccinylase Amino acid transport and metabolism 62182891 Common adi arginine deiminase SC4321 54 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 62180406 Common yobG hypothetical protein SC1836 5 None None None 62178821 Common dkgB 2,5-diketo-D-gluconate reductase B SC0251 181 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 62179562 Pathogen - Gifsy-2 prophage probable minor tail protein SC0992 3 None None None 62180438 Common yreP hypothetical protein SC1868 177 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 62178650 Common yabF glutathione-regulated potassium-efflux system ancillary protein KefF SC0080 71 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 162139625 Common talB transaldolase B SC0007 184 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 62179140 Common ylbF putative cytoplasmic protein SC0570 7 None None None 62178691 Common murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase SC0121 208 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 62182091 Common yhiP inner membrane transporter YhiP SC3521 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 62180717 Pathogen - hypothetical protein SC2147 1 None None None 62182653 Common vbp putative phage baseplate protein SC4083 9 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 62182905 Common yjgP putative permease SC4335 66 COG0795 COG0795, Predicted permeases General function prediction only 62182177 Common selA selenocysteine synthase SC3607 73 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 62180893 Common nuoG NADH dehydrogenase subunit G SC2323 187 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 62178760 Common mrcB penicillin-binding protein 1b SC0190 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 62181015 Common yfeX putative iron-dependent peroxidase SC2445 49 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 62182861 Common yjgA hypothetical protein SC4291 62 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 62180473 Common ruvA Holliday junction DNA helicase motor protein SC1903 211 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 62182107 Common treF trehalase SC3537 29 COG1626 TreA, Neutral trehalase Carbohydrate transport and metabolism 62178698 Common ftsQ cell division protein FtsQ SC0128 84 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 62179020 Common secF preprotein translocase subunit SecF SC0450 220 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 62180858 Common glpB anaerobic glycerol-3-phosphate dehydrogenase subunit B SC2288 32 COG3075 GlpB, Anaerobic glycerol-3-phosphate dehydrogenase Amino acid transport and metabolism 62178961 Pathogen - putative inner membrane protein SC0391 1 None None None 62180506 Common otsB trehalose-6-phosphate phosphatase SC1936 89 COG1877 OtsB, Trehalose-6-phosphatase Carbohydrate transport and metabolism 62179629 Common ars putative periplasmic protein SC1059 127 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 62180015 Common ribE riboflavin synthase subunit alpha SC1445 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 62180999 Common pthP phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) SC2429 138 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 62181464 Common yfcP fimbrial subunit SC2894 14 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62182873 Common licR putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) SC4303 41 COG3711 BglG, Transcriptional antiterminator Transcription 62179061 Common clpX ATP-dependent protease ATP-binding subunit SC0491 233 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 62178923 Common - hypothetical protein SC0353 2 None None None 62180649 Common yeeY putative transcriptional regulator, LysR family SC2079 159 COG0583 LysR, Transcriptional regulator Transcription 62180597 Common cbiP cobyric acid synthase SC2027 151 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 62178596 Common bcfH putative thiol-disulfide isomerase SC0026 65 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 62181769 Common ptkA galactitol-specific PTS system component IIA SC3199 20 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 62179886 Common ansA cytoplasmic asparaginase I SC1316 140 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 62182302 Common ibpA heat shock protein IbpA SC3732 67 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 62179292 Common kdpE DNA-binding response regulator in two-component regulatory system with KdpD SC0722 205 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62180029 Common sodC superoxide dismutase SC1459 86 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 62182898 Pathogen ytgA putative inner membrane protein SC4328 1 None None None 62181838 Common gltB glutamate synthase subunit alpha SC3268 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 162139622 Common yacL hypothetical protein SC0160 22 COG3112 COG3112, Uncharacterized protein conserved in bacteria Function unknown 62180590 Pathogen - hypothetical protein SC2020 1 None None None 62180786 Common lysP lysine transporter SC2216 166 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 62181021 Pathogen ypfK putative inner membrane protein SC2451 1 None None None 62182257 Common yfcI putative cytoplasmic protein SC3687 27 COG5464 COG5464, Uncharacterized conserved protein Function unknown 162139568 Common yfbT putative phosphatase SC2335 141 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 62181898 Common acrF RND family, multidrug transport protein, acriflavin resistance protein F SC3328 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 62180821 Common narP DNA-binding response regulator in two-component regulatory system with NarQ or NarX SC2251 221 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62178602 Common aslB putative arylsulfatase regulatory protein SC0032 83 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 62181273 Pathogen - hypothetical protein SC2703 1 None None None 162139499 Common pmbA peptidase PmbA SC4292 158 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 62181981 Common cysG siroheme synthase SC3411 204 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 62178881 Common gmhA phosphoheptose isomerase SC0311 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 62179091 Common ybaM hypothetical protein SC0521 13 None None None 62179410 Common moeB molybdopterin biosynthesis protein MoeB SC0840 222 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 62178971 Common cydA cytochrome BD2 subunit I SC0401 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 62179333 Common yfbS putative cation transporter SC0763 166 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 62181913 Common fmt methionyl-tRNA formyltransferase SC3343 217 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 62181852 Common rpsI 30S ribosomal protein S9 SC3282 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 62180620 Common pduE Propanediol utilization: dehydratase, small subunit SC2050 13 COG4910 PduE, Propanediol dehydratase, small subunit Secondary metabolites biosynthesis, transport, and catabolism 62181293 Common gabD succinate-semialdehyde dehydrogenase I SC2723 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62182683 Common ubiA 4-hydroxybenzoate octaprenyltransferase SC4113 158 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 62179818 Pathogen - putative cytoplasmic protein SC1248 1 None None None 62181590 Common speB agmatinase SC3020 153 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 62180802 Common yejA putative ABC transporter periplasmic binding protein SC2232 163 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 62180171 Common ydcP putative collagenase SC1601 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 62178665 Common araD L-ribulose-5-phosphate 4-epimerase SC0095 109 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 62182453 Common hemG protoporphyrinogen oxidase SC3883 37 COG4635 HemG, Flavodoxin Energy production and conversion / Coenzyme metabolism 62181190 Common ninG Gifsy-1 prophage NinG SC2620 11 None None None 62182131 Common dppA ABC superfamily (peri_perm), dipeptide transport protein SC3561 213 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 62181149 Common gogB Gifsy-1 prophage leucine-rich repeat protein SC2579 5 None None None 62179573 Common ycdD Gifsy-2 prophage tail fiber assembly like-protein SC1003 14 None None None 62182942 Common yjiO putative MFS family transport protein SC4372 153 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181072 Common yfgG putative inner membrane protein SC2502 6 None None None 62180825 Common ccmE cytochrome c-type biogenesis protein CcmE SC2255 92 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 62178573 Common thrB homoserine kinase SC0003 104 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 62179778 Common - hypothetical protein SC1208 12 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 62182377 Common ilvM acetolactate synthase 2 regulatory subunit SC3807 22 COG3978 COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit Function unknown 62179419 Common etfA putative electron transfer flavoprotein alpha subunit SC0849 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 62179783 Pathogen - hypothetical protein SC1213 2 None None None 62180389 Common yeaB hypothetical protein SC1819 125 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 62182797 Common psd phosphatidylserine decarboxylase SC4227 98 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 62178916 Common - gp23-like protein SC0346 8 None None None 62180676 Common manC mannose-1-phosphate in colanic acid gene cluster SC2106 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 62182832 Common sgaE L-ribulose-5-phosphate 4-epimerase SC4262 81 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 62182117 Common yhjJ putative Zn-dependent peptidase SC3547 48 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 62181079 Common imdH inositol-5-monophosphate dehydrogenase SC2509 237 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 62182759 Pathogen - putative cytoplasmic protein SC4189 1 None None None 62180646 Common sopA Secreted effector protein of Salmonella dublin SC2076 3 None None None 62178743 Common yadH putative ABC superfamily (membrane) transport protein SC0173 154 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 62179424 Common ywfK putative transcriptional regulator, LysR family SC0854 178 COG0583 LysR, Transcriptional regulator Transcription 62179807 Pathogen - unknown protein encoded by prophage CP-933X SC1237 1 None None None 62178899 Pathogen - hypothetical protein SC0329 1 None None None 62182964 Common yjjA hypothetical protein SC4394 15 None None None 62178667 Pathogen - hypothetical protein SC0097 1 None None None 62179146 Common cysS cysteinyl-tRNA synthetase SC0576 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62178896 Common eaa Eaa protein SC0326 4 None None None 62180031 Common ydhJ putative multidrug resistance efflux pump SC1461 166 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62179660 Common csgD DNA-binding transcriptional activator in two-component regulatory system SC1090 146 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62181714 Pathogen - hypothetical protein SC3144 1 None None None 62178635 Common caiC putative crotonobetaine/carnitine-CoA ligase SC0065 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62179929 Common btuC vtamin B12-transporter permease SC1359 190 COG4139 BtuC, ABC-type cobalamin transport system, permease component Coenzyme metabolism 62179830 Pathogen - putative lipoprotein SC1260 1 None None None 62182368 Common rbsK ribokinase SC3798 198 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62178826 Common dniR predicted membrane-bound lytic murein transglycosylase D SC0256 150 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 62180325 Common narI nitrate reductase 1, cytochrome b(NR), gamma subunit SC1755 57 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 62178600 Pathogen - hypothetical protein SC0030 1 None None None 62181340 Common srlR DNA-bindng transcriptional repressor SC2770 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62179696 Common flgG flagellar basal body rod protein FlgG SC1126 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 62182937 Common iadA isoaspartyl dipeptidase SC4367 51 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 62178702 Common yacA SecA regulator SecM SC0132 11 None None None 62182531 Common - putative Mannose-6-phosphate isomerase SC3961 8 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 62182338 Common pstB phosphate transporter subunit SC3768 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 62180552 Common fliN flagellar motor switch protein FliN SC1982 123 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 62180602 Common cbiL cobalt-precorrin-2 C(20)-methyltransferase SC2032 116 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 62180982 Common nupC NUP family, nucleoside transport SC2412 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 62182299 Common yis2 putative integrase protein SC3729 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180624 Common pduK Propanediol utilization: polyhedral bodies SC2054 45 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62180516 Pathogen - putative inner membrane protein SC1946 1 None None None 62182382 Common - putative cytoplasmic protein SC3812 20 COG5606 COG5606, Uncharacterized conserved small protein Function unknown 62180124 Common cybH putative Ni/Fe-hydrogenase 1 b-type cytochrome subunit SC1554 51 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 62179877 Common ydjL Hypothetical zinc-type alcohol dehydrogenase-like SC1307 210 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62181400 Common invG invasion protein; outer membrane SC2830 132 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 62182283 Common rbsK putative sugar kinase, ribokinase family SC3713 189 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62181407 Common - hypothetical protein SC2837 2 None None None 62182023 Common rtcR sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP familiy) SC3453 164 COG4650 RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain Transcription / Signal transduction mechanisms 62178686 Common yabB hypothetical protein SC0116 144 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 62178789 Common frr ribosome recycling factor SC0219 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 62179285 Common ybfE LexA regulated protein SC0715 21 None None None 62179771 Common - putative replication protein SC1201 20 None None None 62180351 Pathogen - putative cytoplasmic protein SC1781 2 None None None 62182466 Common hemN coproporphyrinogen III oxidase SC3896 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 62180168 Pathogen ugtL putative membrane protein UgtL SC1598 1 None None None 62180763 Common maaI putative glutathione S-transferase SC2193 93 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62180932 Common dcdA putative diaminopimelate decarboxylase SC2362 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 62182318 Common dgoR galactonate operon transcriptional repressor (GntR family) SC3748 127 COG2186 FadR, Transcriptional regulators Transcription 62181575 Common iciA chromosome replication initiation inhibitor protein SC3005 79 COG0583 LysR, Transcriptional regulator Transcription 162139520 Common yigI hypothetical protein SC3855 51 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 62181810 Common rhbE hypothetical protein SC3240 85 COG2962 RarD, Predicted permeases General function prediction only 62178767 Common stfD putative periplasmic fimbrial chaperone SC0197 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 162139556 Common ppnK inorganic polyphosphate/ATP-NAD kinase SC2682 240 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 62181392 Common spaP surface presentation of antigens protein SpaP SC2822 128 COG4790 EscR, Type III secretory pathway, component EscR Intracellular trafficking and secretion 62181800 Pathogen - hypothetical protein SC3230 3 None None None 62181648 Common uxaC glucuronate isomerase SC3078 59 COG1904 UxaC, Glucuronate isomerase Carbohydrate transport and metabolism 62182480 Common yihQ alpha-glucosidase SC3910 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 162139551 Common gcvP glycine dehydrogenase SC2994 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 62180901 Pathogen - hypothetical protein SC2331 1 None None None 62182411 Common cyaY frataxin-like protein SC3841 44 COG1965 CyaY, Protein implicated in iron transport, frataxin homolog Inorganic ion transport and metabolism 62180079 Common opcB putative binding-protein-dependent transport system, inner membrane component SC1509 129 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 62180251 Common pspC DNA-binding transcriptional activator SC1681 27 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 62179068 Common ybaE putative ABC transporter periplasmic binding protein SC0498 53 COG4533 COG4533, ABC-type uncharacterized transport system, periplasmic component General function prediction only 62182267 Common - putative helix-turn-helix protein SC3697 43 COG2944 COG2944, Predicted transcriptional regulator Transcription 62179513 Common ycaQ putative cytoplasmic protein SC0943 61 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 62178994 Common yaiB hypothetical protein SC0424 6 None None None 62181842 Common codA cytosine deaminase SC3272 71 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 62180838 Common alkB DNA repair system specific for alkylated DNA SC2268 57 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 62181136 Common murQ N-acetylmuramic acid-6-phosphate etherase SC2566 88 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 62181173 Common - putative bacteriophage protein SC2603 6 None None None 62180068 Common pntB pyridine nucleotide transhydrogenase SC1498 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 62181285 Common tctE tricarboxylic transport: regulatory protein SC2715 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62180820 Pathogen - putative outer membrane protein SC2250 1 None None None 62178835 Common - putative cytoplasmic protein SC0265 23 COG4455 ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion General function prediction only 62182370 Common yieO putative MFS family tranport protein (1st mdule) SC3800 178 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182692 Common yjbN tRNA-dihydrouridine synthase A SC4122 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 62182146 Common - biotin sulfoxide reductase SC3576 173 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62179593 Common sulA SOS cell division inhibitor SC1023 10 COG5404 SulA, SOS-response cell division inhibitor, blocks FtsZ ring formation Cell division and chromosome partitioning 62181444 Common tnpA putative transposase SC2874 13 None None None 62181686 Common sufI repressor protein for FtsI SC3116 66 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 62182206 Pathogen WaaL hypothetical protein SC3636 4 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 62181507 Common ppdB hypothetical protein SC2937 12 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 62179585 Common pqiA paraquat-inducible protein A SC1015 56 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 62180800 Common spr putative lipoprotein, suppresses thermosensitivity of prc mutants at low osmolality SC2230 134 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 62182618 Common hemE uroporphyrinogen decarboxylase SC4048 181 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 62181817 Common yrbB putative STAS domain SC3247 18 COG3113 COG3113, Predicted NTP binding protein (contains STAS domain) General function prediction only 62178814 Common metQ DL-methionine transporter substrate-binding subunit SC0244 101 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 62180834 Common napA periplasmic nitrate reductase, large subunit, in complex with NapB SC2264 186 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62179074 Pathogen - hypothetical protein SC0504 1 None None None 62180318 Common hnr response regulator of RpoS SC1748 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 62181807 Common greA transcription elongation factor GreA SC3237 202 COG0782 GreA, Transcription elongation factor Transcription 62180660 Common udg UDP-glucose/GDP-mannose dehydrogenase SC2090 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 62182434 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase SC3864 142 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 62181668 Common - putative cytoplasmic protein SC3098 3 None None None 62182215 Common rfaG glucosyltransferase I SC3645 162 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62182229 Common nahR putative transcriptional regulator, LysR family SC3659 78 COG0583 LysR, Transcriptional regulator Transcription 162139584 Pathogen sifB secreted effector protein SC1599 1 None None None 62180001 Common - putative cytoplasmic protein SC1431 3 None None None 62181765 Common garR tartronate semialdehyde reductase SC3195 179 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 62179756 Common ymfB putative MutT-like protein SC1186 62 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 62182725 Pathogen ecnB putative entericidin B precursor SC4155 1 None None None 62180659 Common wzzB regulator of length of O-antigen component of lipopolysaccharide chains SC2089 16 COG3765 WzzB, Chain length determinant protein Cell envelope biogenesis, outer membrane 62182222 Common radC DNA repair protein RadC SC3652 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 62181652 Common mbp hypothetical protein SC3082 14 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 62180579 Common - hypothetical protein SC2009 14 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178867 Common sinR transcriptional regulator SC0297 142 COG0583 LysR, Transcriptional regulator Transcription 62179543 Common - putative regulator SC0973 5 None None None 62180357 Common - hypothetical protein SC1787 3 None None None 62178980 Common prpC methylcitrate synthase SC0410 194 COG0372 GltA, Citrate synthase Energy production and conversion 62180815 Common yejM putative hydrolase of alkaline phosphatase superfamily SC2245 40 COG3083 COG3083, Predicted hydrolase of alkaline phosphatase superfamily General function prediction only 62180344 Common prsA ribose-phosphate pyrophosphokinase SC1774 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 62181552 Common recJ ssDNA exonuclease RecJ SC2982 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 62182309 Common torD chaperone protein TorD SC3739 18 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 62182807 Common hfq RNA-binding protein Hfq SC4237 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 62179315 Common cydB cytochrome d terminal oxidase polypeptide subunit II SC0745 156 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 62181234 Common yfiH hypothetical protein SC2664 181 COG1496 COG1496, Uncharacterized conserved protein Function unknown 62179098 Common htpG heat shock protein 90 SC0528 151 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 62181772 Common gadD galactitol-1-phosphate dehydrogenase SC3202 211 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62181900 Common yhdV putative outer membrane lipoprotein SC3330 7 None None None 62179845 Common aadA Aminoglycoside adenyltransferase SC1275 24 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 62180839 Common ada O6-methylguanine-DNA methyltransferase; transcription activator/repressor (AraC/Xyl family) SC2269 206 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 62181732 Common mcp2 putative methyl-accepting chemotaxis protein SC3162 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62179603 Common ybcL putative outer membrane protein SC1033 127 COG1881 COG1881, Phospholipid-binding protein General function prediction only 62180289 Common trpE anthranilate synthase component I SC1719 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 62178806 Common tilS tRNA(Ile)-lysidine synthetase SC0236 183 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 62179728 Common thiK thiamin kinase SC1158 13 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 62179385 Common ybhG hypothetical protein SC0815 149 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62178849 Common - putative cytoplasmic protein SC0279 2 COG3913 SciT, Uncharacterized protein conserved in bacteria Function unknown 62183010 Common fimF putative fimbrial chaparone protein SC4440 19 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62182311 Common torC trimethylamine N-oxide reductase, cytochrome c-type subunit, also has activity as negativer regulator of tor operon SC3741 51 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 62180136 Common rpsV 30S ribosomal subunit S22 SC1566 5 None None None 62181119 Common glyA serine hydroxymethyltransferase SC2549 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 62178734 Common ygbI putative transcriptional regulator (LysR family) SC0164 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62180753 Common dld D-lactate dehydrogenase SC2183 59 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 62179104 Common ybaL putative cation:proton antiport protein SC0534 216 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 62182006 Common yhgF paral putative RNase R SC3436 213 COG2183 Tex, Transcriptional accessory protein Transcription 62178936 Pathogen - hypothetical protein SC0366 1 None None None 62182622 Common yjaH putative inner membrane protein SC4052 10 None None None 62182085 Common yhiH putative ABC-type multidrug transport system, ATPase component; Permease component of an ABC-transporter SC3515 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 62182881 Common treR trehalose repressor SC4311 126 COG1609 PurR, Transcriptional regulators Transcription 62180465 Common - putative cytoplasmic protein SC1895 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180799 Common yeiU putative permease SC2229 14 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 62181455 Pathogen - hypothetical protein SC2885 1 None None None 62179736 Common mfd transcription-repair coupling factor SC1166 234 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 62182489 Common yiiD putative acetyltransferase SC3919 48 COG2153 ElaA, Predicted acyltransferase General function prediction only 62180224 Common ydaL putative Smr domain SC1654 78 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 62179996 Pathogen sseG Secretion system effector SseG SC1426 1 None None None 62182512 Common yiiY putative outer membrane protein SC3942 10 None None None 62181351 Common hycF formate hydrogenlyase complex iron-sulfur subunit SC2781 196 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 62179484 Common ftsK DNA translocase FtsK SC0914 201 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 62178613 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase SC0043 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 62179657 Common csgG putative transcriptional regulator in curly assembly/transport, 2nd curli operon SC1087 17 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 62182465 Common yihI hypothetical protein SC3895 19 COG3078 COG3078, Uncharacterized protein conserved in bacteria Function unknown 62179324 Common ybgF hypothetical protein SC0754 100 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 62182059 Common livF leucine/isoleucine/valine transporter ATP-binding subunit SC3489 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 62182743 Common yjdE arginine:agmatin antiporter SC4173 185 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62180131 Common treZ putative alpha amylase SC1561 169 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 162139577 Common pphA serine/threonine protein phosphatase 1 SC1849 106 None None None 62182490 Common bah putative acetyl esterase SC3920 131 COG0657 Aes, Esterase/lipase Lipid metabolism 62179233 Common ybeF putative DNA-binding transcriptional regulator SC0663 104 COG0583 LysR, Transcriptional regulator Transcription 62180706 Pathogen - putative inner membrane protein SC2136 6 None None None 62178987 Common sbmA transport protein SC0417 56 COG1133 SbmA, ABC-type long-chain fatty acid transport system, fused permease and ATPase components Lipid metabolism 62178857 Pathogen - hypothetical protein SC0287 1 None None None 62181641 Common - putative cytoplasmic protein SC3071 32 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 62180009 Common ssaQ type III secretion system protein SC1439 6 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 62181183 Common enpP hypothetical protein SC2613 8 None None None 62180245 Common tpx thiol peroxidase SC1675 110 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 62182194 Common secB preprotein translocase subunit SecB SC3624 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 62179531 Common lrp putative transcriptional regulator, Lrp family SC0961 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 62179286 Common ybfF hypothetical protein SC0716 145 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 62179161 Pathogen - hypothetical protein SC0591 1 None None None 62181241 Common tyrA bifunctional chorismate mutase/prephenate dehydrogenase SC2671 86 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 62179693 Common flgD flagellar basal body rod modification protein SC1123 99 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 62182818 Common yjfK putative cytoplasmic protein SC4248 9 None None None 62180723 Pathogen - putative inner membrane protein SC2153 1 None None None 62180793 Common setB proton efflux pump SC2223 46 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179280 Common citA citrate-proton symporter SC0710 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182574 Common frwB PTS system fructose-like IIB component 1 SC4004 68 COG1445 FrwB, Phosphotransferase system fructose-specific component IIB Carbohydrate transport and metabolism 62182935 Common pnl putative aspartate racemase SC4365 80 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 62182224 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase SC3654 180 COG0756 Dut, dUTPase Nucleotide transport and metabolism 62179262 Common gltJ ABC superfamily (membrane), glutamate/aspartate transporter SC0692 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 62179664 Common ymdA putative periplasmic protein SC1094 7 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62182150 Common yiaG putative transcriptional regulator SC3580 7 COG2944 COG2944, Predicted transcriptional regulator Transcription 62181990 Common hofQ predicted fimbrial transporter SC3420 141 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 62181742 Common ygjU putative dicarboxylate permease SC3172 111 COG3633 SstT, Na+/serine symporter Amino acid transport and metabolism 62180418 Common - hypothetical protein SC1848 8 None None None 62180840 Common apbE thiamine biosynthesis lipoprotein ApbE SC2270 138 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 62180292 Common trpB tryptophan synthase subunit beta SC1722 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 62182300 Common - putative cytoplasmic protein SC3730 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178964 Common mtrC putative cation efflux pump SC0394 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 62180038 Common pdxY pyridoxamine kinase SC1468 77 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 62181003 Common pdxK pyridoxal kinase SC2433 86 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 62182775 Pathogen - hypothetical protein SC4205 3 None None None 62182913 Common - hypothetical protein SC4343 7 None None None 62180422 Pathogen sopE2 TypeIII-secreted protein effector: invasion-associated protein SC1852 3 None None None 62179535 Common recT Gifsy-2 prophage RecT SC0965 8 None None None 62180294 Common yciG putative cytoplasmic protein SC1724 13 None None None 62181953 Common yheL putative oxidation of intracellular sulfur SC3383 24 COG2168 DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur Inorganic ion transport and metabolism 62179745 Pathogen - hypothetical protein SC1175 1 None None None 62179310 Common kgd alpha-ketoglutarate decarboxylase SC0740 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 62182398 Common rffH glucose-1-phosphate thymidylyltransferase SC3828 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 62181513 Common ygdP dinucleoside polyphosphate hydrolase SC2943 115 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 62178843 Common - putative outer membrane lipoprotein SC0273 30 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 62182293 Common dsdX DsdX permease SC3723 80 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 62179409 Common pflE putative pyruvate formate lyase activating enzyme SC0839 61 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 62180584 Common yajQ hypothetical protein SC2014 23 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 62179206 Common ybdN putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase SC0636 18 COG3969 COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase General function prediction only 62181884 Common yhdH putative oxidoreductase SC3314 88 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 62182843 Common - hypothetical protein SC4273 3 None None None 62181131 Pathogen - hypothetical protein SC2561 1 None None None 62179193 Common fepD iron-enterobactin transporter membrane protein SC0623 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 62182401 Common wzxE O-antigen translocase in LPS biosyntesis SC3831 21 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 62182789 Common frdD fumarate reductase subunit D SC4219 24 COG3080 FrdD, Fumarate reductase subunit D Energy production and conversion 62182959 Common ptnC putative PTS permease SC4389 36 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 62181849 Common sspB ClpXP protease specificity-enhancing factor SC3279 64 COG2969 SspB, Stringent starvation protein B General function prediction only 62182878 Pathogen - hypothetical protein SC4308 1 None None None 62182175 Common - putative transcriptional regulator SC3605 141 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 62180098 Common ydfG L-allo-threonine dehydrogenase, NAD(P)-binding SC1528 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 62178878 Common virG similar to Shigella VirG protein SC0308 4 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 62181521 Common - putative transcriptional regulator SC2951 127 COG1609 PurR, Transcriptional regulators Transcription 62182649 Pathogen - putative cytoplasmic protein SC4079 2 None None None 62181615 Common yggM putative periplasmic protein SC3045 3 None None None 62181988 Common aroB 3-dehydroquinate synthase SC3418 206 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 62179370 Common moaA molybdenum cofactor biosynthesis protein A SC0800 198 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 62181543 Common pilT putative nucleic acid-binding protein, contains PIN domain SC2973 62 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 62180954 Common yfcA hypothetical protein SC2384 157 COG0730 COG0730, Predicted permeases General function prediction only 62178953 Common stbA putative fimbriae; major subunit SC0383 19 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179464 Common ybjD RecF protein-like protein SC0894 30 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 62181568 Common ubiH 2-octaprenyl-6-methoxyphenyl hydroxylase SC2998 121 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 62181471 Common gudT putative MFS superfamily, D-glucarate permease SC2901 206 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62178697 Common ddl D-alanine--D-alanine ligase SC0127 217 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 62182127 Common dppF dipeptide transporter ATP-binding subunit SC3557 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 62181309 Common nrdH glutaredoxin-like protein SC2739 36 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 62178668 Common araC DNA-binding transcriptional regulator AraC SC0098 128 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179043 Common phnX 2-aminoethylphosphonate transport SC0473 25 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 62180052 Common malI Maltose regulon regulatory protein malI SC1482 101 COG1609 PurR, Transcriptional regulators Transcription 62180941 Common usg hypothetical protein SC2371 184 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 62180197 Common - putative inner membrane protein SC1627 55 COG3326 COG3326, Predicted membrane protein Function unknown 62178944 Common ledL isopropylmalate isomerase large subunit SC0374 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 62181096 Common dmsB putative anaerobic dimethylsulfoxide reductase SC2526 165 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62178978 Common prpR regulator for prp operon (EBP family) SC0408 170 COG1221 PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain Transcription / Signal transduction mechanisms 62181661 Common hypO hydrogenase 2 small subunit SC3091 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 62180847 Common tub putative permease SC2277 63 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62182987 Common deoB phosphopentomutase SC4417 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 62181703 Common ygiD putative cytoplasmic protein SC3133 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 62180494 Common cheB chemotaxis-specific methylesterase SC1924 211 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 62180817 Common vtf putative tail fiber protein of phage SC2247 12 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 62182200 Common yibD predicted glycosyl transferase SC3630 169 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62180919 Common yfcF putataive glutathione-S-transferase SC2349 58 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62180525 Common yecC putative amino-acid ABC transporter ATP-binding protein YecC SC1955 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 62178888 Common gpt xanthine-guanine phosphoribosyltransferase SC0318 65 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 62182919 Common - hypothetical protein SC4349 16 None None None 62181318 Common emrA multidrug resistance secretion protein SC2748 150 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62182357 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA SC3787 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 162139608 Common clpP ATP-dependent Clp protease proteolytic subunit SC0490 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 62178989 Common yaiY putative inner membrane protein SC0419 6 None None None 62179511 Common msbA lipid transporter ATP-binding/permease protein SC0941 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 62178855 Pathogen - hypothetical protein SC0285 1 None None None 62181588 Common tktA transketolase SC3018 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 62179529 Common dpaL diaminopropionate ammonia-lyase SC0959 167 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 62181696 Common yqiA esterase YqiA SC3126 47 COG3150 COG3150, Predicted esterase General function prediction only 62179975 Common ttrC Tetrathionate reductase complex, subunit C SC1405 18 COG3301 NrfD, Formate-dependent nitrite reductase, membrane component Inorganic ion transport and metabolism 62181226 Common yfiQ putative acetyl-CoA synthetase SC2656 149 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 62180275 Common pgpB phosphatidylglycerophosphatase B SC1705 26 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 62181639 Common feaB putative NAD-dependent aldehyde dehydrogenase SC3069 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62182642 Common yjbC 23S rRNA pseudouridine synthase F SC4072 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 62181747 Common yqjE putative inner membrane protein SC3177 10 COG5393 COG5393, Predicted membrane protein Function unknown 62182114 Common yhjG putative inner membrane protein SC3544 38 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 62180157 Common yncA putative acyltransferase SC1587 111 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 62179110 Common cueR DNA-binding transcriptional activator of copper-responsive regulon genes SC0540 142 COG0789 SoxR, Predicted transcriptional regulators Transcription 62181975 Common ppiA peptidyl-prolyl cis-trans isomerase A (rotamase A) SC3405 199 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 62182363 Common trkD potassium transport protein Kup SC3793 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 62179416 Common yliD putative ABC transporter inner membrane component SC0846 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62179764 Common yfdP hypothetical protein SC1194 5 None None None 62178779 Common htrA serine endoprotease SC0209 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 62180216 Common ynaF putative universal stress protein SC1646 92 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 162139567 Common ulaA ascorbate-specific PTS system enzyme IIC SC2343 36 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 62181498 Common mltA murein transglycosylase A SC2928 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 62182501 Common - putative branched-chain amino acid permease SC3931 59 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 62180930 Common - putative cytoplasmic protein SC2360 16 COG3457 COG3457, Predicted amino acid racemase Amino acid transport and metabolism 62179107 Common ybaK hypothetical protein SC0537 102 COG2606 EbsC, Uncharacterized conserved protein Function unknown 162139603 Common seqA replication initiation regulator SeqA SC0717 23 COG3057 SeqA, Negative regulator of replication initiationR DNA replication, recombination, and repair 62179591 Common ycbG hypothetical protein SC1021 17 COG3120 COG3120, Uncharacterized protein conserved in bacteria Function unknown 62180725 Common yegS lipid kinase SC2155 74 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 62179129 Common glxR tartronic semialdehyde reductase SC0559 189 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 62180328 Common narG nitrate reductase 1, alpha subunit SC1758 116 COG5013 NarG, Nitrate reductase alpha subunit Energy production and conversion 62182426 Common pldA phospholipase A SC3856 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 62179079 Common ybaZ putative methyltransferase SC0509 152 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 62182561 Common metB cystathionine gamma-synthase SC3991 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 62182280 Common uhpA DNA-binding response regulator in two-component regulatory system wtih UhpB SC3710 187 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62181867 Common mdh malate dehydrogenase SC3297 181 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 62182120 Common yhjL cellulose synthase subunit BcsC SC3550 56 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 62182994 Common radA DNA repair protein RadA SC4424 215 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 62178717 Common abf2 putative cytoplasmic protein SC0147 23 COG3940 COG3940, Predicted beta-xylosidase General function prediction only 62179138 Common fdrA membrane protein FdrA SC0568 154 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 62179943 Common ydiQ putative electron transfer flavoprotein YdiQ SC1373 148 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 62181979 Common nirD nitrite reductase small subunit SC3409 45 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 62181108 Common yfhP DNA-binding transcriptional repressor SC2538 160 COG1959 COG1959, Predicted transcriptional regulator Transcription 62181994 Common yrfD putative periplasmic protein SC3424 10 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 62182522 Common fieF ferrous iron efflux protein F SC3952 210 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 62182242 Common yicH putative inner membrane protein SC3672 13 None None None 162139508 Common groES co-chaperonin GroES SC4208 214 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 62181138 Common panE 2-dehydropantoate 2-reductase SC2568 121 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 162139507 Common efp elongation factor P SC4213 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 62178753 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase SC0183 202 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 62179010 Common - hypothetical protein SC0440 2 None None None 62180440 Common recT RecT protein SC1870 9 COG3723 RecT, Recombinational DNA repair protein (RecE pathway) DNA replication, recombination, and repair 62178917 Common - holin-like protein SC0347 7 None None None 62179268 Common miaB methylthiolation of isopentenylated A37 derivatives in rRNA SC0698 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 62181167 Common - putative bacteriophage protein SC2597 7 None None None 62181125 Common yjdL putative POT family, di-/tripeptide transport protein SC2555 86 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 62180081 Common yehW ABC-type transport systems, permease components SC1511 179 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 62181045 Common aegA putative oxidoreductase Fe-S binding subunit SC2475 212 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 62182582 Common argB acetylglutamate kinase SC4012 207 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 62179518 Common ycbC hypothetical protein SC0948 78 COG1434 COG1434, Uncharacterized conserved protein Function unknown 62180539 Common yedE predicted inner membrane protein SC1969 64 COG2391 COG2391, Predicted transporter component General function prediction only 62181159 Common - putative bacteriophage protein SC2589 8 COG3617 COG3617, Prophage antirepressor Transcription 62179821 Pathogen envF putative envelope lipoprotein SC1251 1 None None None 62181936 Common rpmC 50S ribosomal protein L29 SC3366 93 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 62178671 Common thiP thiamin transporter membrane protein SC0101 180 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 62179961 Common sufC cysteine desulfurase ATPase component SC1391 249 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 62180504 Common yecG universal stress protein UspC SC1934 25 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 62181828 Common rpoN RNA polymerase factor sigma-54 SC3258 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 62180531 Common fliB N-methylation of lysine residues in flagellin SC1961 8 None None None 162139514 Common rpmE 50S ribosomal protein L31 SC3985 196 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 62180269 Common yciT putative regulatory protein, deoR family SC1699 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62179215 Common ybdQ putative Universal stress protein UspA and related nucleotide-binding protein SC0645 61 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 162139497 Common bglJ DNA-binding transcriptional activator BglJ SC4400 25 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62181335 Common srlA PTS family, glucitol/sorbitol-specific enzyme IIC component,one of two IIC components SC2765 22 COG3730 SrlA, Phosphotransferase system sorbitol-specific component IIC Carbohydrate transport and metabolism 62179572 Common stf Gifsy-2 prophage probable tail fiber protein SC1002 16 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 62180693 Common dcd deoxycytidine triphosphate deaminase SC2123 154 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 62182709 Common - membrane permease, predicted cation efflux pump SC4139 110 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62179231 Common tatE twin arginine translocase protein E SC0661 32 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 62180187 Common yceI putative periplasmic protein SC1617 112 COG2353 COG2353, Uncharacterized conserved protein Function unknown 62181236 Common yfiO predicted lipoprotein SC2666 126 COG4105 ComL, DNA uptake lipoprotein General function prediction only 62182094 Common - putative phosphatase SC3524 38 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 62179865 Common yeaJ putative Methyl-accepting chemotaxis protein; Diguanylate cyclase/phosphodiesterase domain 1 SC1295 174 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 62182159 Common tnp transposase of Tn10 SC3589 19 None None None 62179391 Common ybiI hypothetical protein SC0821 26 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 62182212 Common rfaB UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase SC3642 158 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62179648 Common hthR putative transcriptional regulator SC1078 104 COG1737 RpiR, Transcriptional regulators Transcription 62180336 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase SC1766 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 62181087 Common yfgL outer membrane protein assembly complex subunit YfgL SC2517 114 COG1520 COG1520, FOG: WD40-like repeat Function unknown 62178771 Common yadU Hypothetical protein yadU precursor SC0201 3 None None None 62179849 Common - chorismate mutase SC1279 18 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 62180755 Common yohC paral putative transport protein SC2185 24 None None None 62181873 Common yhcQ p-hydroxybenzoic acid efflux subunit AaeA SC3303 148 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62180859 Common glpC sn-glycerol-3-phosphate dehydrogenase subunit C SC2289 183 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 62179402 Common mntR manganese transport regulator MntR SC0832 89 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 62180639 Common yeeA putative inner membrane protein SC2069 19 COG1289 COG1289, Predicted membrane protein Function unknown 62182028 Pathogen - hypothetical protein SC3458 2 None None None 62180396 Common manZ mannose-specific PTS system protein IID SC1826 41 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 62181716 Common yqiK paral putative membrane protein SC3146 40 COG2268 COG2268, Uncharacterized protein conserved in bacteria Function unknown 62182053 Common ugpC glycerol-3-phosphate transporter ATP-binding subunit SC3483 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 62178832 Common - putative cytoplasmic protein SC0262 43 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 62179015 Common yajB acyl carrier protein phosphodiesterase SC0445 33 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 62181478 Common ygdH putative nucleotide binding SC2908 49 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 62181659 Common hybB predicted hydrogenase 2 cytochrome b type component SC3089 29 COG5557 COG5557, Polysulphide reductase Energy production and conversion 62179781 Common - Fels-1 prophage putative chitinase SC1211 28 COG3179 COG3179, Predicted chitinase General function prediction only 62178586 Common - hypothetical protein SC0016 29 COG3926 zliS, Putative secretion activating protein General function prediction only 62180253 Common pspA phage shock protein; negative regulatory gene for the psp opreon SC1683 75 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 62182977 Common yjjG nucleotidase SC4407 125 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 62181391 Common spaQ surface presentation of antigens; secretory proteins SC2821 24 COG4794 EscS, Type III secretory pathway, component EscS Intracellular trafficking and secretion 162139618 Common dksA DnaK transcriptional regulator DksA SC0186 119 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 62179683 Common grxB glutaredoxin 2 SC1113 18 COG2999 GrxB, Glutaredoxin 2 Posttranslational modification, protein turnover, chaperones 62181619 Common yggL hypothetical protein SC3049 25 COG3171 COG3171, Uncharacterized protein conserved in bacteria Function unknown 62178992 Common - putative inner membrane protein SC0422 37 COG3921 COG3921, Uncharacterized protein conserved in bacteria Function unknown 62179445 Common rumB 23S rRNA metyluridine methyltransferase SC0875 183 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 62180301 Common yciB intracellular septation protein A SC1731 92 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 62181288 Common tctC tricarboxylic transport SC2718 72 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 62181572 Common ygfA predicted ligase SC3002 148 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 62181268 Common insM hypothetical protein SC2698 145 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181398 Common invA invasion protein SC2828 127 COG4789 EscV, Type III secretory pathway, component EscV Intracellular trafficking and secretion 62182350 Common atpH F0F1 ATP synthase subunit delta SC3780 179 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 62181583 Common - putative DNA-binding protein SC3013 19 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 62180971 Common yfdY putative inner membrane protein SC2401 3 None None None 62179261 Common gltK ABC superfamily (membrane), glutamate/aspartate transporter SC0691 180 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 62179214 Common ynfH putative hydrogenase protein SC0644 15 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 62181634 Common moaR putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain SC3064 110 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62182929 Common iicA putative cytoplasmic protein SC4359 7 None None None 62182021 Common - putative ribonucleoprotein related-protein SC3451 15 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 62182837 Common rpsR 30S ribosomal protein S18 SC4267 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 62181035 Common eutP putative ethanolamine utilization protein SC2465 18 COG4917 EutP, Ethanolamine utilization protein Amino acid transport and metabolism 62180114 Common yneE putative inner membrane protein SC1544 56 COG3781 COG3781, Predicted membrane protein Function unknown 62179254 Common ybeR putative cytoplasmic protein SC0684 6 None None None 62179479 Common aat leucyl/phenylalanyl-tRNA--protein transferase SC0909 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 62181561 Common yqfB hypothetical protein SC2991 16 COG3097 COG3097, Uncharacterized protein conserved in bacteria Function unknown 62182166 Common xylA xylose isomerase SC3596 68 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 62182281 Common vaaS putative cytoplasmic protein SC3711 14 None None None 62182035 Common glgA glycogen synthase SC3465 131 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 62181375 Common prgI cell invasion protein; cytoplasmic SC2805 8 None None None 62178782 Common shiA putative inner membrane protein SC0212 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181342 Common ygaA anaerobic nitric oxide reductase transcription regulator SC2772 169 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 62179302 Common ybgK putative carboxylase SC0732 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 62180976 Common glk glucokinase SC2406 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 62181710 Common yis2 putative integrase protein SC3140 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62179169 Common cusS Sensor protein SC0599 212 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 62182324 Common recF recombination protein F SC3754 167 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 62179504 Common cmk cytidylate kinase SC0934 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 62180569 Common cspB putative cold-shock protein SC1999 176 COG1278 CspC, Cold shock proteins Transcription 62180903 Common yfbR hypothetical protein SC2333 34 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 62180365 Common dadX alanine racemase SC1795 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 62180234 Pathogen - putative serine/threonine protein kinase SC1664 1 None None None 62179456 Common ybjR putative aminidase SC0886 106 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 62179670 Common msyB hypothetical protein SC1100 7 None None None 62181932 Common rplE 50S ribosomal protein L5 SC3362 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 62179341 Common galM aldose 1-epimerase SC0771 94 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 62182752 Common dcuS sensory histidine kinase DcuS SC4182 204 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 62182950 Common lysE transporter, LysE family SC4380 89 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 62180617 Common pudB Propanediol utilization: polyhedral bodies SC2047 21 COG4816 EutL, Ethanolamine utilization protein Amino acid transport and metabolism 62179769 Pathogen - hypothetical protein SC1199 2 None None None 62179522 Common ycbB hypothetical protein SC0952 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 62181673 Common - putative cytoplasmic protein SC3103 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62182186 Common lldP L-lactate permease SC3616 104 COG1620 LldP, L-lactate permease Energy production and conversion 62182260 Common ptpC putative phosphotransferase system enzyme IIC SC3690 37 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 62180062 Pathogen - hypothetical protein SC1492 1 None None None 62179249 Common uxaA putative hydrolase N-terminus SC0679 59 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 62179276 Common nagE N-acetyl glucosamine specific PTS system components IIABC SC0706 60 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 62179907 Common celF phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase) SC1337 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 62178627 Common citG2 putative modifier of citrate lyase protein SC0057 48 COG1767 CitG, Triphosphoribosyl-dephospho-CoA synthetase Coenzyme metabolism 62181160 Pathogen - hypothetical protein SC2590 1 None None None 62180074 Common ynfM putative MFS familty transport protein SC1504 122 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179363 Common bioF 8-amino-7-oxononanoate synthase SC0793 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 62178803 Common chi2 putative endochitinase SC0233 26 COG3979 COG3979, Uncharacterized protein contain chitin-binding domain type 3 General function prediction only 62179790 Common - Gifsy-1 prophage head protein gp7 SC1220 10 None None None 62179124 Common ybbB tRNA 2-selenouridine synthase SC0554 65 COG2603 COG2603, Predicted ATPase General function prediction only 162139535 Common rpsL 30S ribosomal protein S12 SC3382 242 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 62179133 Common ybbY putative purine permease YbbY SC0563 45 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 62180548 Common fliJ flagellar biosynthesis chaperone SC1978 41 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 162139574 Common cheZ chemotaxis regulator CheZ SC1922 42 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62180455 Common yebE putative inner membrane protein SC1885 32 COG2979 COG2979, Uncharacterized protein conserved in bacteria Function unknown 62180687 Common wzc tyrosine kinase SC2117 147 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 62180862 Common yfaU putative aldolase SC2292 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 62179271 Common asnB asparagine synthetase B SC0701 159 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 62179225 Common dpiB sensory histidine kinase in two-component regulatory system with DpiA, regulation of cit operon and plasmid inheritance genes SC0655 191 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 62180609 Common cbiE cobalt-precorrin-6Y C(5)-methyltransferase SC2039 104 COG2241 CobL, Precorrin-6B methylase 1 Coenzyme metabolism 62178737 Common yacC putative periplasmic protein SC0167 11 None None None 62181116 Common - putative periplasmic or exported protein SC2546 25 COG3683 COG3683, ABC-type uncharacterized transport system, periplasmic component General function prediction only 62182809 Common hflK FtsH protease regulator HflK SC4239 214 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 62182078 Common yhhQ hypothetical protein SC3508 80 COG1738 COG1738, Uncharacterized conserved protein Function unknown 62181074 Pathogen - putative cytoplasmic protein SC2504 4 None None None 62181448 Common cysI sulfite reductase, alpha subunit, NADPH dependent SC2878 146 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 62182322 Common - putative transcriptional regulator, LysR family SC3752 103 COG0583 LysR, Transcriptional regulator Transcription 62178571 Pathogen thrL thr operon leader peptide SC0001 1 None None None 62182538 Common yneC autoinducer-2 (AI-2) modifying protein LsrG SC3968 25 COG1359 COG1359, Uncharacterized conserved protein Function unknown 62181271 Pathogen fljA Flagellar synthesis: repressor of fliC SC2701 2 None None None 62180622 Common pduH Propanediol utilization: diol dehydratase reactivation SC2052 10 None None None 62182567 Common metF 5,10-methylenetetrahydrofolate reductase SC3997 155 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 62179212 Common yyaE putative oxidoreductase protein SC0642 187 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62182105 Common psi putative phosphosugar isomerase SC3535 83 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 62179127 Common allR DNA-binding transcriptional repressor SC0557 122 COG1414 IclR, Transcriptional regulator Transcription 162139586 Common yncD paral putative outer membrane receptor SC1585 119 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 62178908 Pathogen regN antitermination protein SC0338 2 None None None 62181493 Common ygdI putative lipoprotein SC2923 13 None None None 62182381 Common - putative cytoplasmic protein SC3811 28 COG4679 COG4679, Phage-related protein Function unknown 62179380 Common ybhP putative cytoplasmic protein SC0810 64 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 62179836 Common - putative outer membrane lipoprotein SC1266 4 None None None 62180670 Common wcaM putative colanic acid biosynthesis protein SC2100 5 None None None 62181210 Common - putative cytoplasmic protein SC2640 4 None None None 62180287 Common yciO hypothetical protein SC1717 220 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 62181831 Common yhbJ hypothetical protein SC3261 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 62179927 Common pheT phenylalanyl-tRNA synthetase subunit beta SC1357 246 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 62180173 Common ydcO putative benzoate membrane transport protein SC1603 60 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 62178582 Common dnaK molecular chaperone DnaK SC0012 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 62180145 Common - putative transcriptional regulator, TetR family SC1575 23 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 62179734 Common ycfR putative outer membrane protein SC1164 11 None None None 62179965 Common ynhG putative LysM domain SC1395 89 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 62180112 Common yneH glutaminase SC1542 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 62178828 Common yafS putative SAM-dependent methyltransferase SC0258 55 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62179545 Common - putative replication protein O of prophage CP-933X SC0975 11 None None None 62179331 Common fumA fumarate hydratase SC0761 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 62179189 Common entF enterobactin synthase subunit F SC0619 216 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 62182155 Common - putative acetyltransferase SC3585 45 None None None 62179785 Common terL Gifsy-1 prophage terminase large chaing gp2 SC1215 37 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 62182868 Common - putative inner membrane protein SC4298 11 None None None 62179575 Common - ISSfl3 orfC,D SC1005 54 None None None 62179773 Common rusA crossover junction endodeoxyribonuclease SC1203 8 COG4570 Rus, Holliday junction resolvase DNA replication, recombination, and repair 62181394 Pathogen invJ surface presentation of antigens; secretory proteins SC2824 2 None None None 62181658 Common hybC hydrogenase 2 large subunit SC3088 108 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 62179059 Common tig trigger factor SC0489 216 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 62180463 Common yebK DNA-binding transcriptional regulator HexR SC1893 94 COG1737 RpiR, Transcriptional regulators Transcription 62180338 Common sirC putative transcriptional regulator SC1768 34 COG3094 COG3094, Uncharacterized protein conserved in bacteria Function unknown 62180037 Common tyrS tyrosyl-tRNA synthetase SC1467 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62181442 Common ygcI putative cytoplasmic protein SC2872 22 None None None 62179875 Common yeaC putative cytoplasmic protein SC1305 28 COG3139 COG3139, Uncharacterized protein conserved in bacteria Function unknown 62182944 Common yis2 putative integrase protein SC4374 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181028 Common eutJ paral putative heatshock protein (Hsp70) SC2458 22 COG4820 EutJ, Ethanolamine utilization protein, possible chaperonin Amino acid transport and metabolism 62180327 Common narH nitrate reductase 1, FeS (beta) subunit SC1757 149 COG1140 NarY, Nitrate reductase beta subunit Energy production and conversion 62178638 Common caiT L-carnitine/gamma-butyrobetaine antiporter SC0068 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 162139615 Common cdsA CDP-diglyceride synthase SC0222 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 62181469 Common grk putative glycerate kinase 2 SC2899 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 162139526 Common yicJ putative transporter SC3674 80 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62179698 Common flgI flagellar basal body P-ring protein SC1128 104 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 62181013 Common cysP thiosulfate transporter subunit SC2443 89 COG4150 CysP, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 62179426 Common yliJ putative glutathione S-transferase SC0856 91 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62178680 Pathogen leuL leu operon leader peptide SC0110 1 None None None 62178879 Common yafV hypothetical protein SC0309 190 COG0388 COG0388, Predicted amidohydrolase General function prediction only 62178659 Common djlA Dna-J like membrane chaperone protein SC0089 69 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 62182962 Common - putative glucosamine-fructose-6-phosphate aminotransferase SC4392 49 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 62180626 Common pduM Propanediol utilization SC2056 8 None None None 62180975 Common yfdZ aminotransferase SC2405 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 62179486 Common ycaJ recombination factor protein RarA SC0916 238 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 62178619 Common oadA pyruvate carboxylase subunit B SC0049 176 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 62180491 Common flhB flagellar biosynthesis protein FlhB SC1921 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 62182560 Common metJ transcriptional repressor protein MetJ SC3990 23 COG3060 MetJ, Transcriptional regulator of met regulon Transcription / Amino acid transport and metabolism 62181635 Common - putative cytoplasmic protein SC3065 6 None None None 62179491 Pathogen - hypothetical protein SC0921 1 None None None 62179235 Common ybeD hypothetical protein SC0665 46 COG2921 COG2921, Uncharacterized conserved protein Function unknown 62180678 Common wcaI putative glycosyl transferase in colanic acid biosynthesis SC2108 17 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 62179716 Common - putative cytoplasmic protein SC1146 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178894 Common int Int SC0324 134 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 62182463 Common yihA GTPase EngB SC3893 179 COG0218 COG0218, Predicted GTPase General function prediction only 62181693 Common mdaB NADPH specific quinone oxidoreductase (drug modulator) SC3123 46 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 62181405 Common - putative cytoplasmic protein SC2835 19 None None None 62180879 Common menD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase SC2309 98 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 62179560 Common - hypothetical protein SC0990 3 None None None 62179702 Common rne ribonuclease E SC1132 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 62180942 Common pdxB erythronate-4-phosphate dehydrogenase SC2372 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 62179954 Common ydiK predicted inner membrane protein SC1384 75 COG0628 PerM, Predicted permease General function prediction only 62178652 Common folA dihydrofolate reductase SC0082 146 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 62178693 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase SC0123 208 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 62179893 Common nudG pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase SC1323 166 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 62182651 Common vpi putative phage tail protein SC4081 23 COG4385 gpI, Bacteriophage P2-related tail formation protein General function prediction only 62182677 Common malF maltose transporter membrane protein SC4107 137 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 62180696 Common yegE putative PAS/PAC domain; Diguanylate cyclase/phosphodiesterase domain 1, Diguanylate cyclase/phosphodiesterase domain 2, SC2126 193 COG3447 COG3447, Predicted integral membrane sensor domain Signal transduction mechanisms 62180856 Common glpT sn-glycerol-3-phosphate transporter SC2286 85 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180734 Common stcD putative outer membrane lipoprotein SC2164 5 None None None 62182734 Common yjcO putative TPR repeat protein SC4164 56 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 62183001 Common rob transcriptional regulator (AraC/XylS family) SC4431 112 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179650 Common yjhT putative inner membrane protein SC1080 16 COG3055 COG3055, Uncharacterized protein conserved in bacteria Function unknown 62181895 Common yhdU putative periplasmic protein SC3325 5 None None None 62179827 Common - putative periplasmic protein SC1257 3 None None None 62180715 Common yibJ hypothetical protein SC2145 39 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 62182707 Common mac putative methyl-accepting chemotaxis protein SC4137 24 None None None 62180988 Pathogen - hypothetical protein SC2418 2 COG4317 COG4317, Uncharacterized protein conserved in bacteria Function unknown 62180027 Common ydhL putative oxidoreductase SC1457 24 COG3313 COG3313, Predicted Fe-S protein General function prediction only 62180896 Common nuoC bifunctional NADH:ubiquinone oxidoreductase subunit C/D SC2326 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 62182655 Common gtrA putative phage glucose translocase SC4085 7 COG2246 COG2246, Predicted membrane protein Function unknown 62180267 Common yciR RNase II stability modulator SC1697 182 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 62178921 Pathogen - TPA: unknown SC0351 2 None None None 62180217 Common emrE putative membrane transporter of cations SC1647 107 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 62182393 Common wecA Undecaprenyl-phosphate alpha-N-acetylglucosaminyl SC3823 156 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 62178817 Common yaeD D,D-heptose 1,7-bisphosphate phosphatase SC0247 132 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 62181918 Common yhdN hypothetical protein SC3348 25 None None None 62182138 Common lpfE long polar fimbrial minor protein SC3568 15 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62178872 Pathogen tcfD putative fimbrail protein SC0302 1 None None None 62179498 Common focA formate transporter SC0928 92 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 62179612 Common pipC Pathogenicity island encoded protein: homologous to ipgE of Shigella SC1042 3 None None None 62179659 Common csgE curli assembly protein CsgE SC1089 10 None None None 62181217 Common yfiC putative transferase SC2647 76 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 62180508 Common ftnB ferritin-like protein SC1938 69 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 62181784 Common yhbT putative lipid carrier protein SC3214 32 COG3154 COG3154, Putative lipid carrier protein Lipid metabolism 62182804 Common amiB N-acetylmuramoyl-l-alanine amidase II SC4234 163 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 62182904 Pathogen - hypothetical protein SC4334 1 None None None 62180917 Common yfcD putative NTP pyrophosphohydrolase SC2347 23 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 62179294 Common kdpC potassium-transporting ATPase subunit C SC0724 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 62179430 Common mdfA multidrug translocase SC0860 169 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182875 Common relE putative inner membrane protein SC4305 25 COG2026 RelE, Cytotoxic translational repressor of toxin-antitoxin stability system Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning 62182715 Common soxR redox-sensing transcriptional activator SoxR, contains iron-sulfur center for redox-sensing (MerR family) SC4145 87 COG0789 SoxR, Predicted transcriptional regulators Transcription 62180017 Common ydhC inner membrane transport protein YdhC SC1447 198 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62178723 Common lpdA dihydrolipoamide dehydrogenase SC0153 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 62181010 Common cysA sulfate/thiosulfate transporter subunit SC2440 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 62181466 Common relA GDP/GTP pyrophosphokinase SC2896 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 62178949 Pathogen - putative outer membrane protein SC0379 1 None None None 62183012 Pathogen - putative periplasmic protein SC4442 1 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62178728 Common yieI predicted inner membrane protein SC0158 4 None None None 62181727 Common dnaG DNA primase SC3157 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 62179459 Common ltaA L-allo-threonine aldolase, PLP-dependent SC0889 106 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 62180599 Common cboQ synthesis of vitamin B12 adenosyl cobalamide precursor SC2029 48 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 62182432 Common yigM paral putative transport protein SC3862 59 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 62179496 Pathogen sopD homologous to secreted protein sopD SC0926 2 None None None 62179387 Common rhlE ATP-dependent RNA helicase RhlE SC0817 236 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 62179754 Common ycfC hypothetical protein SC1184 41 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 62179198 Common entB 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochorismatase SC0628 80 COG1535 EntB, Isochorismate hydrolase Secondary metabolites biosynthesis, transport, and catabolism 162139592 Common rpmI 50S ribosomal protein L35 SC1354 24 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 62178925 Common - putative packaging glycoprotein SC0355 6 None None None 62179348 Common ybhT putative outer membrane or exported SC0778 6 None None None 62179709 Common rpmF 50S ribosomal protein L32 SC1139 88 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 62180204 Common ybcY putative SAM-dependent methyltransferase SC1634 11 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62179569 Common vtaK Gifsy-2 prophage probable tail assembly protein SC0999 14 COG1310 COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily General function prediction only 62179027 Common ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase SC0457 224 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 62180713 Pathogen - hypothetical protein SC2143 1 None None None 62180634 Common pduU Propanediol utilization: polyhedral bodies SC2064 19 COG4810 EutS, Ethanolamine utilization protein Amino acid transport and metabolism 62182599 Pathogen - hypothetical protein SC4029 1 None None None 62178866 Common ybeJ putative xylanase/chitin deacetylase SC0296 88 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 62179881 Common ydjH Hypothetical sugar kinase ydjH SC1311 164 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62182083 Common nikR nickel responsive regulator SC3513 59 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 62178982 Common prpE putative acetyl-CoA synthetase, propionate catabolism operon SC0412 217 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 62180007 Pathogen ssaO Secretion system apparatus SsaO SC1437 1 None None None 62178931 Common - VG14_BPP22 (Q01075) Protein gp14 SC0361 3 None None None 62179605 Common yccX putative phosphohydrolase SC1035 140 COG1254 AcyP, Acylphosphatases Energy production and conversion 62179508 Common yis putative integrase protein SC0938 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181369 Common hilC bacterial regulatory helix-turn-helix proteins, araC family SC2799 33 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62181534 Pathogen - hypothetical protein SC2964 3 None None None 62178808 Common yaeP hypothetical protein SC0238 12 None None None 62180161 Common srfB ssrAB activated gene SC1591 14 COG4457 SrfB, Uncharacterized protein conserved in bacteria, putative virulence factor Function unknown 62180990 Common xapA purine nucleoside phosphorylase SC2420 156 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 62181829 Common yhbH putative sigma(54) modulation protein SC3259 137 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 62179689 Common flgM anti-sigma28 factor FlgM SC1119 13 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 62180228 Common ynaJ putative inner membrane protein SC1658 6 None None None 62181224 Common trxC thioredoxin 2 SC2654 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 62182549 Common menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase SC3979 99 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 62181360 Common hypD putative hydrogenase expression/formation protein SC2790 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 62179317 Common ybgE hypothetical protein SC0747 16 COG3790 COG3790, Predicted membrane protein Function unknown 62180355 Common hyaE hydrogenase-1 operon protein HyaE SC1785 10 None None None 62178793 Common yaeL zinc metallopeptidase SC0223 214 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 62178847 Pathogen - putative shiga-like toxin A subunit SC0277 1 None None None 62182939 Common yjiH putative inner membrane protein SC4369 11 COG3314 COG3314, Uncharacterized protein conserved in bacteria Function unknown 62179272 Common nagD UMP phosphatase SC0702 109 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 62178732 Common ygbK putative inner membrane protein SC0162 61 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 62181709 Common - putative cytoplasmic protein SC3139 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180380 Common rnd ribonuclease D SC1810 120 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 162139501 Common ulaD 3-keto-L-gulonate-6-phosphate decarboxylase SC4260 55 COG0269 SgbH, 3-hexulose-6-phosphate synthase and related proteins Carbohydrate transport and metabolism 62182487 Common rbn ribonuclease BN SC3917 90 COG1295 Rbn, Predicted membrane protein Function unknown 62182275 Common - putative phosphotransferase system mannitol/fructose-specific IIA domain SC3705 21 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 62181314 Common proW glycine betaine transporter membrane protein SC2744 209 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 62181453 Common int putative integrase protein SC2883 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62182953 Common yjiX putative cytoplasmic protein SC4383 27 COG2879 COG2879, Uncharacterized small protein Function unknown 62179991 Common sseC Secretion system effector SseC SC1421 8 COG5613 COG5613, Uncharacterized conserved protein Function unknown 62179052 Common cyoD cytochrome o ubiquinol oxidase subunit IV SC0482 61 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 62179502 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase SC0932 229 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 62182624 Common hydH sensor protein ZraS SC4054 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62178928 Common - DNA stabilization protein SC0358 3 None None None 62181383 Common iacp acyl carrier protein SC2813 101 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62182057 Common doc Doc SC3487 37 COG3654 Doc, Prophage maintenance system killer protein General function prediction only 62181065 Common upp uracil phosphoribosyltransferase SC2495 165 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 62181057 Common grk hypothetical protein SC2487 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 62182203 Common rfaD ADP-L-glycero-D-mannoheptose-6-epimerase SC3633 223 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 62180122 Common hupF putative hydrogenase protein SC1552 3 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 62182046 Common yhhY putative acetyltransferase YhhY SC3476 71 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 62179998 Common ssaH Secretion system apparatus SsaH SC1428 2 None None None 62179468 Common cspD CspA-like protein SC0898 179 COG1278 CspC, Cold shock proteins Transcription 62181185 Common - Gifsy-1 prophage protein SC2615 5 None None None 62180771 Common sanA hypothetical protein SC2201 40 COG2949 SanA, Uncharacterized membrane protein Function unknown 62179066 Common ybaW putative esterase SC0496 22 COG0824 FcbC, Predicted thioesterase General function prediction only 62180317 Common galU UTP--glucose-1-phosphate uridylyltransferase subunit GalU SC1747 230 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 62180066 Common ydgH putative periplasmic protein SC1496 11 None None None 62180844 Common - hybrid sensory kinase in two-component regulatory system with RcsB and YojN SC2274 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62179461 Common hcr HCP oxidoreductase, NADH-dependent SC0891 132 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 62182928 Common - putative cytoplasmic protein SC4358 10 COG4332 COG4332, Uncharacterized protein conserved in bacteria Function unknown 62182384 Common ilvC ketol-acid reductoisomerase SC3814 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 62179600 Common yccU putative cytoplasmic protein SC1030 131 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 162139579 Common ycgN hypothetical protein SC1804 74 COG2983 COG2983, Uncharacterized conserved protein Function unknown 62182184 Common - putative inner membrane lipoprotein SC3614 4 None None None 62180765 Common gdo putative 1,2-dioxygenase protein SC2195 30 COG3435 COG3435, Gentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 62181577 Common yggE hypothetical protein SC3007 59 COG2968 COG2968, Uncharacterized conserved protein Function unknown 62181863 Common ttdA tartrate dehydratase subunit alpha SC3293 132 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 62181684 Common yiaM putative inner membrane protein SC3114 36 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 62181779 Common yraR putative nucleoside-diphosphate-sugar epimerase SC3209 55 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 62182440 Common ubiB putative ubiquinone biosynthesis protein UbiB SC3870 184 COG0661 AarF, Predicted unusual protein kinase General function prediction only 162139549 Common fba fructose-bisphosphate aldolase SC3010 174 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 62179853 Pathogen nor putative nitric oxide reductase SC1283 2 None None None 62180331 Common narL DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) SC1761 224 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62181812 Pathogen - hypothetical protein SC3242 4 None None None 62180046 Common rnfB electron transport complex protein RnfB SC1476 120 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 62179933 Common ydiV putative Diguanylate cyclase/phosphodiesterase domain 1 SC1363 9 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62182639 Common pepE peptidase E SC4069 34 COG3340 PepE, Peptidase E Amino acid transport and metabolism 62182616 Common rsd anti-RNA polymerase sigma 70 factor SC4046 24 COG3160 Rsd, Regulator of sigma D Transcription 62180836 Common eco ecotin precursor SC2266 23 COG4574 Eco, Serine protease inhibitor ecotin General function prediction only 62180212 Common ldhA D-lactate dehydrogenase SC1642 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 62182316 Common dgoA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase SC3746 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 62178598 Pathogen - hypothetical protein SC0028 2 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62182148 Common yiaE 2-hydroxyacid dehydrogenase SC3578 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 62179982 Common ssrB Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA SC1412 214 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62179072 Common mdlA putative multidrug transporter membrane\ATP-binding components SC0502 248 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 62181356 Common hycA transcriptional repressor of hyc and hyp operons SC2786 7 None None None 62181813 Common ispB octaprenyl diphosphate synthase SC3243 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 62180832 Common napH quinol dehydrogenase membrane component SC2262 58 COG0348 NapH, Polyferredoxin Energy production and conversion 62178837 Pathogen - hypothetical protein SC0267 1 None None None 62181152 Common pin Fels-2 prophage Pin SC2582 10 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 62182213 Pathogen yibR putative inner membrane protein SC3643 1 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 62179168 Pathogen - hypothetical protein SC0598 1 None None None 62182694 Common qor quinone oxidoreductase, NADPH-dependent SC4124 188 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 62180956 Common aroC chorismate synthase SC2386 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 62182061 Common livM leucine/isoleucine/valine transporter permease subunit SC3491 137 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 62180657 Common hisF imidazole glycerol phosphate synthase subunit HisF SC2087 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 62182123 Common - hypothetical protein SC3553 3 None None None 62178996 Common yaiC putative diguanylate cyclase/phosphodiesterase domain 1 SC0426 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 62181855 Common yhcB cytochrome d ubiquinol oxidase subunit III SC3285 26 COG3105 COG3105, Uncharacterized protein conserved in bacteria Function unknown 62178784 Common glnD PII uridylyl-transferase SC0214 123 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 62181140 Common budR putative transcriptional regulator, LysR family SC2570 192 COG0583 LysR, Transcriptional regulator Transcription 62178608 Common yaaY putative cytoplasmic protein SC0038 3 None None None 62180477 Common yebC hypothetical protein SC1907 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 62182630 Common yjaB hypothetical protein SC4060 66 COG0456 RimI, Acetyltransferases General function prediction only 62182835 Common rpsF 30S ribosomal protein S6 SC4265 189 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 62182761 Common hilD putative AraC-type DNA-binding domain-containing protein SC4191 62 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62180662 Common - putative 12 transmembrane segment protein SC2092 10 None None None 62182742 Common yjdB predicted metal dependent hydrolase SC4172 66 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 62182749 Common fumB fumarase B (fumarate hydratase class I), anaerobic isozyme SC4179 146 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 62181592 Common yjmC putative malate/L-lactate dehydrogenase SC3022 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 62179515 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase SC0945 138 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 62182265 Common bglA putative glycosyl hydrolase family SC3695 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 62180965 Common yfdC putative transport SC2395 38 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 62181599 Common yqgD putative inner membrane protein SC3029 3 None None None 62179082 Common rpmJ 50S ribosomal protein L36 SC0512 60 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 62182519 Common cpxA two-component sensor protein SC3949 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62182479 Common yihP putative GPH family transport protein SC3909 77 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62180577 Pathogen - hypothetical protein SC2007 1 None None None 62178937 Common - hypothetical protein SC0367 2 None None None 62179227 Common dcuC C4-dicarboxylate transporter DcuC SC0657 22 COG3069 DcuC, C4-dicarboxylate transporter Energy production and conversion 62180886 Common nuoN NADH dehydrogenase subunit N SC2316 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 62181586 Common cbiO putative ABC-type cobalt transport system, ATPase component SC3016 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 62182644 Common ybaS putative Na+-dependent transporter SC4074 78 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 62181557 Common ygfY hypothetical protein SC2987 50 COG2938 COG2938, Uncharacterized conserved protein Function unknown 62180411 Common prc carboxy-terminal protease SC1841 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 62182234 Common gmk guanylate kinase SC3664 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 62179718 Common pabC 4-amino-4-deoxychorismate lyase SC1148 118 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 62182828 Common sgaB L-ascorbate-specific enzyme IIB component of PTS SC4258 16 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 62182989 Common yjjJ hypothetical protein SC4419 8 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 62180255 Common sapA ABC superfamily (periplasm), peptide transport protein SC1685 196 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 62181861 Pathogen oadG oxaloacetate decarboxylase subunit gamma SC3291 2 COG3630 OadG, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit Energy production and conversion 62179397 Pathogen - hypothetical protein SC0827 1 None None None 162139605 Common entC isochorismate synthase SC0626 223 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62180527 Common yedO D-cysteine desulfhydrase SC1957 73 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 62181770 Common ptkB galactitol-specific PTS system component IIB SC3200 15 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 62180277 Common acnA aconitate hydratase SC1707 222 COG1048 AcnA, Aconitase A Energy production and conversion 62181430 Common truD tRNA pseudouridine synthase D SC2860 87 COG0585 COG0585, Uncharacterized conserved protein Function unknown 62181758 Common tdcD propionate/acetate kinase SC3188 161 COG0282 ackA, Acetate kinase Energy production and conversion 62178710 Common guaC guanosine 5'-monophosphate oxidoreductase SC0140 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 62180308 Common oppF ABC superfamily (atp-binding), oligopeptide transport protein SC1738 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 62179005 Common araJ protein AraJ SC0435 152 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180484 Common yecP putative enzyme SC1914 54 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 62182668 Common - putative cytoplasmic protein SC4098 12 COG5566 COG5566, Uncharacterized conserved protein Function unknown 62181060 Common perM putative PerM family permease SC2490 138 COG0628 PerM, Predicted permease General function prediction only 62181420 Common hcrR putative transcriptional regulator SC2850 114 COG1846 MarR, Transcriptional regulators Transcription 62180978 Common dciP putative thiamine pyrophosphate enzyme SC2408 220 COG3961 COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only 62182251 Pathogen - putative cytoplasmic protein SC3681 1 None None None 62179863 Pathogen - putative inner membrane protein SC1293 1 None None None 62181417 Common ygbK paral putative tRNA synthase SC2847 59 COG3395 COG3395, Uncharacterized protein conserved in bacteria Function unknown 62182508 Common rhaS positive regulator for rhaBAD operon (AraC/XylS family) SC3938 145 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 62180307 Common cikL putative voltage-gated potassium channel SC1737 118 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 62182685 Common dgkA diacylglycerol kinase SC4115 110 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 62181973 Common pabA para-aminobenzoate synthase component II SC3403 238 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 62181712 Common yqiC putative cytoplasmic protein SC3142 52 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 62179793 Common gipA Gifsy-1 prophage GlpA SC1223 71 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178758 Common ligT 2'-5' RNA ligase SC0188 80 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 62182917 Pathogen - hypothetical protein SC4347 2 None None None 62180391 Common yoaD putative diguanylate cyclase/phosphodiesterase SC1821 163 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62178919 Common lycV lysin SC0349 18 COG4678 COG4678, Muramidase (phage lambda lysozyme) Carbohydrate transport and metabolism 62179319 Common tolQ colicin uptake protein TolQ SC0749 148 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 62182011 Common bioH carboxylesterase BioH SC3441 146 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 62179450 Common artM arginine transporter permease subunit ArtM SC0880 170 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 62178883 Common yafK putative periplasmic protein SC0313 49 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 62179377 Pathogen - putative inner membrane protein SC0807 1 None None None 62180869 Common yfbE UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase SC2299 204 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 62179941 Common ydiS flavoprotein SC1371 115 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 62179723 Common ptsG glucose-specific PTS system IIBC components SC1153 50 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 62182075 Common zntA zinc/cadmium/mercury/lead-transporting ATPase SC3505 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 62179070 Common - putative cysteine synthase/cystathionine beta-synthase SC0500 211 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 62179936 Common aroH phospho-2-dehydro-3-deoxyheptonate aldolase SC1366 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 62178805 Common yaeR hypothetical protein SC0235 41 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 62178842 Common - putative cytoplasmic protein SC0272 31 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 62182240 Common gltS GltS family, glutamate transport protein SC3670 52 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 62181738 Common ygjP putative metal-dependent hydrolase SC3168 39 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 62179343 Common galT galactose-1-phosphate uridylyltransferase SC0773 79 COG1085 GalT, Galactose-1-phosphate uridylyltransferase Energy production and conversion 62181992 Common yrfB putative inner membrane protein SC3422 6 None None None 62179131 Common allP allantoin permease SC0561 53 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 62180400 Common ftsI putative penicillin-binding protein-3 SC1830 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 62181281 Pathogen - hypothetical protein SC2711 3 None None None 162139545 Common speC ornithine decarboxylase isozyme SC3055 83 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 62182256 Common yicL putative permease, integral membrane protein SC3686 65 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 62178751 Common panC pantoate--beta-alanine ligase SC0181 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 62179695 Common flgF flagellar basal body rod protein FlgF SC1125 121 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 62179984 Common ssaB Secretion system apparatus SsaB SC1414 2 None None None 62181819 Common yrbD putative ABC superfamily (bind_prot) transport protein SC3249 73 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 62180936 Common dedD hypothetical protein SC2366 20 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 62179136 Common allC allantoate amidohydrolase SC0566 85 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 62180428 Pathogen - putative cytoplasmic protein SC1858 1 None None None 62181977 Pathogen - hypothetical protein SC3407 2 None None None 62179712 Common fabD acyl carrier protein S-malonyltransferase SC1142 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 62182863 Common cybC cytochrome b(562) SC4293 11 COG3783 CybC, Soluble cytochrome b562 Energy production and conversion 62181052 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase SC2482 204 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 62179439 Common ybjN putative cytoplasmic protein SC0869 13 None None None 162139565 Common mnmC 5-methylaminomethyl-2-thiouridine methyltransferase SC2381 82 COG4121 COG4121, Uncharacterized conserved protein Function unknown 62182551 Common hslV ATP-dependent protease peptidase subunit SC3981 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 62178719 Common aroP aromatic amino acid transporter SC0149 158 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62182597 Common coaA pantothenate kinase SC4027 73 COG1072 CoaA, Panthothenate kinase Coenzyme metabolism 62179208 Common dsbG disulfide isomerase/thiol-disulfide oxidase SC0638 25 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 62181600 Common metK S-adenosylmethionine synthetase SC3030 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 62182219 Common mutM formamidopyrimidine-DNA glycosylase SC3649 183 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 62179109 Common copA copper transporter SC0539 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 62179084 Common maa maltose O-acetyltransferase SC0514 96 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 62181986 Common dam DNA adenine methylase SC3416 98 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 62182791 Common frdB fumarate reductase iron-sulfur subunit SC4221 208 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 62182770 Common yjdC putative transcriptional regulator SC4200 40 COG1309 AcrR, Transcriptional regulator Transcription 62182811 Common yjeT putative inner membrane protein SC4241 5 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 62180721 Common yegQ putative protease SC2151 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 62178955 Pathogen - putative periplasmic protein SC0385 1 None None None 62180795 Pathogen - putative inner membrane protein SC2225 1 None None None 62178864 Common safC putative fimbriae usher SC0294 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62182777 Common yjeH inner membrane protein YjeH SC4207 41 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62182851 Common ytfK putative cytoplasmic protein SC4281 16 None None None 62179533 Common intQ Gifsy-2 prophage integrase SC0963 95 COG0582 XerC, Integrase DNA replication, recombination, and repair 62181355 Common hycB hydrogenase-3, iron-sulfur subunit (part of FHL complex) SC2785 141 COG1142 HycB, Fe-S-cluster-containing hydrogenase components 2 Energy production and conversion 62180780 Pathogen - hypothetical protein SC2210 1 None None None 62180704 Common - putative cytoplasmic protein SC2134 5 None None None 62179264 Common lnt apolipoprotein N-acyltransferase SC0694 165 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 62181114 Common asrC anaerobic sulfide reductase SC2544 104 COG2221 DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits Energy production and conversion 62179358 Common hutC urocanate hydratase SC0788 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 62181955 Common yheN hypothetical protein SC3385 43 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 62182576 Common frwD PTS system fructose-like IIB component 2 SC4006 68 COG1445 FrwB, Phosphotransferase system fructose-specific component IIB Carbohydrate transport and metabolism 62183014 Common yjjY putative inner membrane protein SC4444 4 None None None 62181150 Pathogen - hypothetical protein SC2580 1 None None None 62180435 Common - putative inner membrane protein SC1865 15 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 62180024 Common gloA glyoxalase I SC1454 128 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 62181324 Common yqaA putative inner membrane protein SC2754 73 COG1238 COG1238, Predicted membrane protein Function unknown 62180631 Common pduS Propanediol utilization: polyhedral bodies SC2061 71 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 62178910 Common rpo replication protein O SC0340 6 None None None 62181362 Common fhlA formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family) SC2792 174 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 62181427 Common nlpD predicted outer membrane lipoprotein SC2857 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 62180453 Common exoX exodeoxyribonuclease X SC1883 154 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 62182307 Common ccmA ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein SC3737 94 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 62182273 Common ptkC putative PTS system galactitol-specific enzyme IIC component SC3703 19 COG3775 GatC, Phosphotransferase system, galactitol-specific IIC component Carbohydrate transport and metabolism 62181518 Common ygeD hypothetical protein SC2948 71 None None None 62179558 Pathogen - Gifsy-2 prophage protein SC0988 2 None None None 62181165 Common - putative bacteriophage protein SC2595 7 None None None 62183008 Common sthB putative fimbrial usher protein SC4438 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62180420 Pathogen - putative inner membrane protein SC1850 1 None None None 62181511 Common lgt prolipoprotein diacylglyceryl transferase SC2941 204 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 62180092 Common rspA putative dehydratase, starvation sensing protein SC1522 106 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62178984 Common yaiU flagellar protein SC0414 32 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62181749 Common yqjF putative membrane-associated protein SC3179 40 COG2259 COG2259, Predicted membrane protein Function unknown 62180592 Pathogen - hypothetical protein SC2022 1 None None None 62179022 Common - putative regulatory protein SC0452 103 COG2378 COG2378, Predicted transcriptional regulator Transcription 62180447 Pathogen prpA hypothetical protein SC1877 1 None None None 62179652 Common yjhC putative dehydrogenase and related proteins SC1082 175 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 62182428 Common rhtC threonine efflux system SC3858 121 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 62182982 Common yjjV putative deoxyribonuclease YjjV SC4412 236 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 62180050 Common add adenosine deaminase SC1480 106 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 62180192 Common adh3 alcohol dehydrogenase class III SC1622 207 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 62179159 Common fimY putative regulatory protein SC0589 3 None None None 62180582 Pathogen - putative periplasmic protein SC2012 3 None None None 62181410 Pathogen - putative cytoplasmic protein SC2840 4 None None None 62181484 Pathogen - hypothetical protein SC2914 1 None None None 62182125 Common - cystathionine gamma-synthase SC3555 13 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 62179368 Common slrP leucine-rich repeat protein SC0798 35 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 62182493 Common - putative bacterial regulatory protein, merR family SC3923 46 COG2944 COG2944, Predicted transcriptional regulator Transcription 62181617 Pathogen - hypothetical protein SC3047 1 None None None 62181316 Common ygaY putative inner membrane protein SC2746 116 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180189 Common ydcj putative cytoplasmic protein SC1619 23 COG5383 COG5383, Uncharacterized protein conserved in bacteria Function unknown 62182787 Common sugE quaternary ammonium compound-resistance protein SugE SC4217 142 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 62179312 Common sucC succinyl-CoA synthetase subunit beta SC0742 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 62178584 Common ybdO putative transcriptional regulator, LysR family SC0014 63 COG0583 LysR, Transcriptional regulator Transcription 62179555 Common - Gifsy-1 prophage protein SC0985 5 None None None 62180199 Common yckA putative amino acid ABC transporter permease component SC1629 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 62179915 Common yniA putative cytoplasmic protein SC1345 71 COG3001 COG3001, Uncharacterized protein conserved in bacteria Function unknown 62181199 Pathogen - hypothetical protein SC2629 1 None None None 62181258 Common smpB SsrA-binding protein SC2688 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 62181437 Common cysD sulfate adenylyltransferase subunit 2 SC2867 136 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 62178861 Common - putative integrase core domain SC0291 71 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62182321 Common dgoA putative mandelate racemase / muconate lactonizing enzyme family SC3751 112 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62179868 Common mipA scaffolding protein for murein-synthesizing holoenzyme SC1298 37 COG3713 OmpV, Outer membrane protein V Cell envelope biogenesis, outer membrane 62180742 Common - hypothetical 169 kd lipoprotein precursor SC2172 4 COG4808 COG4808, Uncharacterized protein conserved in bacteria Function unknown 62181909 Common yrdD putative DNA topoisomerase SC3339 143 COG0551 TopA, Zn-finger domain associated with topoisomerase type I DNA replication, recombination, and repair 62182845 Common ytfE cell morphogenesis/cell wall metabolism regulator SC4275 45 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 62182585 Common udhA soluble pyridine nucleotide transhydrogenase SC4015 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 62181921 Common rpsD 30S ribosomal protein S4 SC3351 217 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 62179743 Common potC spermidine/putrescine ABC transporter membrane protein SC1173 208 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 62181098 Common sseA 3-mercaptopyruvate sulfurtransferase SC2528 142 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 62181526 Common kduD 2-deoxy-D-gluconate 3-dehydrogenase SC2956 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62181157 Common - putative bacteriophage protein SC2587 10 COG4540 gpV, Phage P2 baseplate assembly protein gpV General function prediction only 62180757 Common yohF acetoin dehydrogenase SC2187 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62179919 Common - putative outer membrane protein SC1349 23 COG3528 COG3528, Uncharacterized protein conserved in bacteria Function unknown 62180290 Common trpD bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase SC1720 230 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 62182661 Common vtc putative phage tail core protein SC4091 26 COG3498 COG3498, Phage tail tube protein FII General function prediction only 62181307 Common ynjA putative cytoplasmic protein SC2737 83 COG2128 COG2128, Uncharacterized conserved protein Function unknown 62181082 Pathogen ratA putative outer membrane protein SC2512 3 None None None 162139542 Common yraN hypothetical protein SC3206 132 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 62182609 Pathogen - putative inner membrane protein SC4039 2 None None None 62179354 Common ybhC putative pectinesterase SC0784 18 COG4677 PemB, Pectin methylesterase Carbohydrate transport and metabolism 62182365 Common rbsA D-ribose transporter ATP binding protein SC3795 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 62180744 Common yehT putative two-component response-regulatory protein YehT SC2174 211 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 62180973 Common yis2 putative integrase protein SC2403 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180808 Common bcr bicyclomycin/multidrug efflux system SC2238 207 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181767 Common gatY tagatose-bisphosphate aldolase SC3197 179 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 62180610 Common cbiD cobalt-precorrin-6A synthase SC2040 92 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 62179900 Common cho endonuclease of nucleotide excision repair SC1330 214 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 62180180 Common sgcC putative PTS system enzyme IIC component SC1610 19 COG3775 GatC, Phosphotransferase system, galactitol-specific IIC component Carbohydrate transport and metabolism 62182700 Common yjbR putative cytoplasmic protein SC4130 37 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 62179667 Common mdoG glucan biosynthesis protein G SC1097 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 62182947 Common yjiS putative cytoplasmic protein SC4377 5 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 62182287 Pathogen ivbL ilvB operon leader peptide SC3717 1 None None None 62179252 Common ybeL hypothetical protein SC0682 20 None None None 62181205 Pathogen - Gifsy-1 prophage protein SC2635 1 None None None 62180845 Common gyrA DNA gyrase subunit A SC2275 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 62179524 Common ycbL putative Metallo-beta-lactamase SC0954 223 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 62181967 Common yheU hypothetical protein SC3397 31 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 62182112 Common yhjD putative tRNA-processing ribonuclease SC3542 26 COG1295 Rbn, Predicted membrane protein Function unknown 62181916 Common mscL large-conductance mechanosensitive channel SC3346 134 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62181951 Common rpsG 30S ribosomal protein S7 SC3381 242 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 62181037 Common maeB malic enzyme SC2467 216 COG0281 SfcA, Malic enzyme Energy production and conversion 62180279 Common yciX hypothetical protein SC1709 5 None None None 62179122 Common sfbB putative ABC-type transport system ATPase component/cell division protein SC0552 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 62181670 Common exbD biopolymer transport protein ExbD SC3100 140 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 62181934 Common rplN 50S ribosomal protein L14 SC3364 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 62182557 Common yis2 putative integrase protein SC3987 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181505 Common ppdC hypothetical protein SC2935 7 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 62178625 Common citF2 putative citrate lyase alpha chain/citrate-ACP transferase SC0055 34 COG3051 CitF, Citrate lyase, alpha subunit Energy production and conversion 62181238 Common yfiA translation inhibitor protein RaiA SC2668 86 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 62179909 Common katE hydroperoxidase II SC1339 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 62179792 Pathogen mcpF Gifsy-1 prophage minor capsid protein FII SC1222 3 None None None 62179300 Common ybgI putative hydrolase-oxidase SC0730 103 COG0327 COG0327, Uncharacterized conserved protein Function unknown 62182915 Common - replication protein SC4345 7 None None None 62180103 Common ydeI hypothetical protein SC1533 15 COG3111 COG3111, Uncharacterized conserved protein Function unknown 62179170 Common ykgD putative transcriptional regulator (AraC/XylS family) SC0600 123 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 162139533 Common hslO Hsp33-like chaperonin SC3430 139 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 62180475 Pathogen - hypothetical protein SC1905 1 None None None 62181671 Common exbB biopolymer transport protein ExbB SC3101 146 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 62180072 Common ydgD putative protease SC1502 18 COG3591 COG3591, V8-like Glu-specific endopeptidase Amino acid transport and metabolism 62181106 Common nifU scaffold protein SC2536 154 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 62180542 Common fliE flagellar hook-basal body protein FliE SC1972 71 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 162139495 Common deoA thymidine phosphorylase SC4416 118 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 62180481 Common yecE hypothetical protein SC1911 78 COG1801 COG1801, Uncharacterized conserved protein Function unknown 62182341 Common pstS phosphate transporter subunit SC3771 134 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 62180619 Common pduD Propanediol utilization: dehydratase, medium subunit SC2049 13 None None None 62182755 Common - putative anaerobic dimethyl sulfoxide reductase, subunit C SC4185 18 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 62179000 Common yaiA hypothetical protein SC0430 8 None None None 62179326 Common pnuC NMN family, nucleoside/purine/pyrimidine transporter SC0756 61 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 62178947 Common deh putative hydrolase or acyltransferase SC0377 116 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 62179240 Common mrdA penicillin-binding protein 2 SC0670 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 62178623 Common citD2 citrate lyase subunit gamma SC0053 26 COG3052 CitD, Citrate lyase, gamma subunit Energy production and conversion 62182168 Common bax hypothetical protein SC3598 31 COG2992 Bax, Uncharacterized FlgJ-related protein General function prediction only 62180666 Common - hypothetical protein SC2096 4 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62182754 Common dmsB putative anaerobic dimethyl sulfoxide reductase, subunit B SC4184 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62179643 Common - putative periplasmic protein SC1073 35 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 62179470 Common clpA ATP-dependent Clp protease ATP-binding subunit SC0900 224 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 62182470 Common typA GTP-binding protein SC3900 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 62180702 Common baeS signal transduction histidine-protein kinase BaeS SC2132 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62181960 Common yheV putative cytoplasmic protein SC3390 21 COG3529 COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain General function prediction only 62179297 Pathogen - putative outer membrane protein SC0727 1 None None None 62179390 Common ybiJ hypothetical protein SC0820 10 None None None 62180644 Common phsA Hydrogen sulfide production: membrane anchoring protein SC2074 183 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62181123 Common cadB predicted lysine/cadaverine transporter SC2553 184 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62181566 Common gcvT glycine cleavage system aminomethyltransferase T SC2996 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 62180442 Pathogen - hypothetical protein SC1872 1 None None None 62181030 Common eutN putative detox protein in ethanolamine utilization SC2460 43 COG4576 CcmL, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62179834 Common - putative cytoplasmic protein SC1264 27 COG4692 COG4692, Predicted neuraminidase (sialidase) Carbohydrate transport and metabolism 62182210 Common rfaJ UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase SC3640 31 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 62179634 Pathogen - Suppression of copper sensitivity: putative copper binding protein SC1064 7 None None None 162139589 Common ynfC hypothetical protein SC1518 6 None None None 62181495 Common ygdK putative SufE protein probably involved in Fe-S center assembly SC2925 92 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 62181243 Common yfiR putative periplasmic protein SC2673 15 None None None 62181875 Common yhcS putative DNA-binding transcriptional regulator SC3305 182 COG0583 LysR, Transcriptional regulator Transcription 62181179 Common - hypothetical protein SC2609 20 COG3567 COG3567, Uncharacterized protein conserved in bacteria Function unknown 62179548 Common dinI Gifsy-1 prophage DinI SC0978 12 None None None 62182590 Common murI glutamate racemase SC4020 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 62178673 Common yabN paral putative periplasmic binding protein of transport system SC0103 82 COG4533 COG4533, ABC-type uncharacterized transport system, periplasmic component General function prediction only 62181043 Common yffH putative pyrophosphohydrolase SC2473 108 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 62180560 Common yedP mannosyl-3-phosphoglycerate phosphatase SC1990 29 COG3769 COG3769, Predicted hydrolase (HAD superfamily) General function prediction only 62182600 Common tuf elongation factor Tu SC4030 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 62179278 Common ybfM putative outer membrane protein SC0708 14 None None None 162139512 Common thiG thiazole synthase SC4042 167 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 62178777 Common pfs 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase SC0207 114 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 62180695 Pathogen - hypothetical protein SC2125 1 None None None 62178901 Common exoD Endodeoxyribonuclease SC0331 9 COG5018 KapD, Inhibitor of the KinA pathway to sporulation, predicted exonuclease General function prediction only 62181999 Common yrfH ribosome-associated heat shock protein Hsp15 SC3429 113 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 62182036 Common glgC glucose-1-phosphate adenylyltransferase SC3466 168 COG0448 GlgC, ADP-glucose pyrophosphorylase Carbohydrate transport and metabolism 62179309 Common sdhB succinate dehydrogenase iron-sulfur subunit SC0739 202 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 62178810 Common yaeJ hypothetical protein SC0240 126 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 62181089 Common hisS histidyl-tRNA synthetase SC2519 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62181744 Common yqjB hypothetical protein SC3174 9 None None None 62181940 Common rpsS 30S ribosomal protein S19 SC3370 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 62179854 Pathogen - hypothetical protein SC1284 1 None None None 62181266 Pathogen - hypothetical protein SC2696 1 None None None 62182352 Common atpL F0F1 ATP synthase subunit C SC3782 50 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 62181215 Common rpoE RNA polymerase sigma factor RpoE SC2645 175 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 62181938 Common rpsC 30S ribosomal protein S3 SC3368 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 62181540 Common yfdX hypothetical protein SC2970 6 None None None 62180654 Common hisB imidazole glycerol-phosphate dehydratase/histidinol phosphatase SC2084 216 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 62179448 Common - putative sulfatase SC0878 55 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 62182346 Common atpC F0F1 ATP synthase subunit epsilon SC3776 179 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 62179400 Common ybiP putative Integral membrane protein SC0830 49 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 62179627 Common hpaX 4-hydroxyphenylacetate catabolism SC1057 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180537 Common amyA cytoplasmic alpha-amylase SC1967 45 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 62180637 Common pduX Propanediol utilization SC2067 17 COG4542 PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase Secondary metabolites biosynthesis, transport, and catabolism 62180732 Common thiM hydroxyethylthiazole kinase SC2162 77 COG2145 ThiM, Hydroxyethylthiazole kinase, sugar kinase family Coenzyme metabolism 162139524 Common yieF putative oxidoreductase SC3763 117 COG0431 COG0431, Predicted flavoprotein General function prediction only 62179466 Common ybjY macrolide transporter subunit MacA SC0896 173 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 62182584 Common oxyR DNA-binding transcriptional regulator OxyR SC4014 192 COG0583 LysR, Transcriptional regulator Transcription 62180926 Common argT ABC superfamily (bind_prot), lysine/arginine/ornithine transport protein SC2356 176 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62178834 Common - putative cytoplasmic protein SC0264 22 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 62182782 Common yjeK putative aminomutase SC4212 126 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 62180040 Common tppB putative tripeptide transporter permease SC1470 81 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 62178946 Common faaH putative fumarylacetoacetate (FAA) hydrolase SC0376 178 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 62179447 Common - putative inner membrane protein SC0877 7 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 62182940 Common yjiJ putative sugar transporter SC4370 47 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 62180163 Common ydcX putative inner membrane protein SC1593 9 None None None 62180567 Common yedR putative inner membrane protein SC1997 3 None None None 62179031 Common pgpA phosphatidylglycerophosphatase A SC0461 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 62179788 Common vg05 Gifsy-1 prophage head-tail preconnector gp5 SC1218 130 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 62178641 Common fixB putative electron transfer flavoprotein FixB SC0071 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 62181033 Common eutT putative cobalamin adenosyltransferase, ethanolamine utilization SC2463 12 COG4812 EutT, Ethanolamine utilization cobalamin adenosyltransferase Amino acid transport and metabolism 62179528 Common - putative leucine response regulator SC0958 161 COG1522 Lrp, Transcriptional regulators Transcription 62180151 Pathogen - hypothetical protein SC1581 1 None None None 62180805 Common yejF putative ATPase component of ABC-type transport system, contain duplicated ATPase domain SC2235 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 62179367 Pathogen - putative cytoplasmic protein SC0797 1 None None None 162139511 Common metH B12-dependent methionine synthase SC4067 178 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 62182033 Common yfaX putative bacterial transcriptional regulator SC3463 118 COG1414 IclR, Transcriptional regulator Transcription 62182231 Common yigC putative inner membrane protein SC3661 116 COG2860 COG2860, Predicted membrane protein Function unknown 62181121 Common hmpA nitric oxide dioxygenase SC2551 130 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 62182136 Common celR putative bacterial regulatory proteins, lacI family SC3566 123 COG1609 PurR, Transcriptional regulators Transcription 62179474 Common ycaC Homolog of slsA in STM SC0904 63 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 62180183 Common sgcE ribulose-phosphate 3-epimerase SC1613 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 62181284 Common nxiA putative nickel transporter SC2714 37 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 62181886 Common yedZ putative sulfite oxidase subunit YedZ SC3316 75 COG2717 COG2717, Predicted membrane protein Function unknown 62179289 Common - putative cytoplasmic protein SC0719 32 COG3467 COG3467, Predicted flavin-nucleotide-binding protein General function prediction only 62179451 Common artQ arginine transporter permease subunit ArtQ SC0881 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 62179825 Pathogen pagD PhoP regulated SC1255 1 None None None 62181544 Common yge putative cytoplasmic protein SC2974 21 COG4456 VagC, Virulence-associated protein and related proteins Function unknown 62180773 Common yeiT putative oxidoreductase SC2203 204 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 62179897 Common astA arginine succinyltransferase SC1327 38 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 62182418 Common xerC site-specific tyrosine recombinase XerC SC3848 228 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 62181787 Common yhbW hypothetical protein SC3217 112 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 62182956 Pathogen - hypothetical protein SC4386 2 None None None 62180534 Common fliD flagellar capping protein SC1964 95 COG1345 FliD, Flagellar capping protein Cell motility and secretion 62180935 Common cvpA colicin V production protein SC2365 100 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 62181804 Common hflB ATP-dependent metalloprotease SC3234 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 62180642 Common - Hydrogen sulfide production: membrane anchoring protein SC2072 16 COG4117 COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) Energy production and conversion 62181438 Common iap aminopeptidase in alkaline phosphatase isozyme conversion SC2868 28 COG2234 Iap, Predicted aminopeptidases General function prediction only 62179441 Common potG putrescine transporter ATP-binding subunit SC0871 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 62180747 Common - putative inner membrane protein SC2177 4 None None None 62179761 Common tnpR transposase of Tn10 SC1191 19 None None None 62180333 Common ychN putative ACR involved in intracellular sulfur reduction SC1763 25 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 62178592 Common bcfD fimbrial subunit SC0022 7 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179035 Common xseB exodeoxyribonuclease VII small subunit SC0465 136 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 62180190 Common ydcI putative transcriptional regulators, LysR family SC1620 191 COG0583 LysR, Transcriptional regulator Transcription 62182330 Common trmE tRNA modification GTPase TrmE SC3760 231 COG0486 ThdF, Predicted GTPase General function prediction only 62182968 Common yjjP paral putative membrane protein SC4398 52 COG2966 COG2966, Uncharacterized conserved protein Function unknown 62178795 Common hlpA periplasmic chaperone SC0225 60 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 62178862 Pathogen safA putative outer membrane protein SC0292 1 None None None 162139580 Common purU formyltetrahydrofolate deformylase SC1751 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 62180367 Common ycgB hypothetical protein SC1797 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 62180915 Common ptxA putative phosphotransferase system SC2345 44 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 62179033 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase SC0463 227 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 62181278 Common iroN TonB-dependent siderophore receptor protein SC2708 121 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 62180669 Common galF UTP--glucose-1-phosphate uridylyltransferase subunit GalF SC2099 228 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 62182121 Common - endo-1,4-D-glucanase SC3551 18 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 62181312 Common nrdF ribonucleotide-diphosphate reductase subunit beta SC2742 138 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 62178622 Common citC2 putative citrate lyase synthetase (citrate (pro-3S)-lyase ligase SC0052 25 COG3053 CitC, Citrate lyase synthetase Energy production and conversion 62180526 Common yecS putative ABC-type amino acid transporter, permease component SC1956 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 62182378 Common ilvE branched-chain amino acid aminotransferase SC3808 220 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 62180441 Common recT RecT protein SC1871 10 COG3723 RecT, Recombinational DNA repair protein (RecE pathway) DNA replication, recombination, and repair 62178674 Common leuD hypothetical protein SC0104 3 None None None 62180109 Common marC multiple drug resistance protein MarC SC1539 159 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 62181321 Pathogen - hypothetical protein SC2751 1 None None None 62180564 Common vsr DNA mismatch endonuclease, patch repair protein SC1994 68 COG3727 Vsr, DNA G:T-mismatch repair endonuclease DNA replication, recombination, and repair 62178892 Common proB gamma-glutamyl kinase SC0322 193 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 62180730 Common yegW putative regulatory protein, gntR family SC2160 123 COG2188 PhnF, Transcriptional regulators Transcription 62179218 Common citG triphosphoribosyl-dephospho-CoA synthase SC0648 48 COG1767 CitG, Triphosphoribosyl-dephospho-CoA synthetase Coenzyme metabolism 62179113 Common ybbL putative ABC transporter ATP-binding protein YbbL SC0543 249 COG4619 COG4619, ABC-type uncharacterized transport system, ATPase component General function prediction only 62182225 Common slmA nucleoid occlusion protein SC3655 61 COG1309 AcrR, Transcriptional regulator Transcription 62182705 Pathogen - hypothetical protein SC4135 1 None None None 62178939 Common gtrB Bactoprenol glucosyl transferase homolog from prop SC0369 177 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62180485 Common yecM hypothetical protein SC1915 20 COG3102 COG3102, Uncharacterized protein conserved in bacteria Function unknown 62180119 Common hupK putative dehydrogenase protein SC1549 4 COG3259 FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit Energy production and conversion 62179219 Common citX 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase SC0649 24 COG3697 CitX, Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) Coenzyme metabolism / Lipid metabolism 62179229 Common ccrB camphor resistance protein CrcB SC0659 183 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 62179780 Common - putative prophage membrane protein SC1210 9 None None None 62182949 Common yjiW LexA regulated, putative SOS response SC4379 6 None None None 62181964 Common mauR putative ATPase component of ABC transporter with duplicated ATPase domain SC3394 6 None None None 62180545 Common fliG flagellar motor switch protein G SC1975 123 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 62180759 Pathogen - hypothetical protein SC2189 1 None None None 62179245 Common nadD nicotinic acid mononucleotide adenyltransferase SC0675 170 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 62180425 Common bls putative acetyltransferase SC1855 29 COG0456 RimI, Acetyltransferases General function prediction only 62181678 Common yqhD putative alcohol dehydrogenase SC3108 168 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 62181126 Common glnB Nitrogen regulatory protein P-II 1 SC2556 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 62181411 Common mutS DNA mismatch repair protein SC2841 202 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 62179273 Common nagC transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family) SC0703 169 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 62178618 Common oadB putative oxalacetate decarboxylase, subunit beta SC0048 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 62182993 Common serB phosphoserine phosphatase SC4423 153 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 62181371 Common orgB putative flagellar biosynthesis/type III secretory pathway protein SC2801 5 None None None 62179344 Common galE UDP-galactose-4-epimerase SC0774 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 62178629 Pathogen - hypothetical protein SC0059 2 None None None 62180249 Common pspE thiosulfate:cyanide sulfurtransferase (rhodanese) SC1679 70 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 62178649 Common - putative sulfatase SC0079 74 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 162139571 Common cbiM cobalt transport protein CbiM SC2031 49 COG0310 CbiM, ABC-type Co2+ transport system, permease component Inorganic ion transport and metabolism 62182016 Common malP maltodextrin phosphorylase SC3446 140 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 62181047 Common yffB hypothetical protein SC2477 106 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 62180360 Common ymgE putative transglycosylase-associated protein SC1790 64 COG2261 COG2261, Predicted membrane protein Function unknown 62179406 Common ybiU putative cytoplasmic protein SC0836 11 None None None 62182005 Common greB transcription elongation factor GreB SC3435 201 COG0782 GreA, Transcription elongation factor Transcription 62182342 Common aroE shikimate 5-dehydrogenase SC3772 209 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 62180559 Common yodD putative cytoplasmic protein SC1989 6 None None None 162139539 Common argG argininosuccinate synthase SC3231 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 62179624 Common hpaF 4-hydroxyphenylacetate catabolism SC1054 33 COG3232 HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase Amino acid transport and metabolism 62180070 Common ydgF multidrug efflux system protein MdtJ SC1500 142 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 162139530 Common yhhS hypothetical protein SC3510 48 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182979 Common osmY periplasmic protein SC4409 64 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 62181876 Common tldD suppresses inhibitory activity of CsrA SC3306 170 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 62178774 Common yadR putative HesB-like domain SC0204 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 62181956 Common yheO Hypothetical protein yheO SC3386 48 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 62180075 Common ynfL putative transcriptional regulator, LysR family SC1505 178 COG0583 LysR, Transcriptional regulator Transcription 62179327 Common ybgR zinc transporter ZitB SC0757 188 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 62179902 Common osmE DNA-binding transcriptional activator SC1332 11 None None None 62179977 Common ttrS Tetrathionate reductase complex: sensory transduction histidine kinase SC1407 197 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 62179172 Common ykgI putative periplasmic protein SC0602 3 None None None 62182756 Common ynfI putative component of anaerobic dehydrogenase SC4186 22 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 62180273 Common yciM hypothetical protein SC1703 74 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 62179766 Common rpc regulatory protein SC1196 58 COG2932 COG2932, Predicted transcriptional regulator Transcription 62182359 Common asnC DNA-binding transcriptional regulator AsnC SC3789 155 COG1522 Lrp, Transcriptional regulators Transcription 62179500 Common ycaP putative inner membrane protein SC0930 67 COG2323 COG2323, Predicted membrane protein Function unknown 62181026 Common eutH putative transport protein, ethanolamine utilization SC2456 18 COG3192 EutH, Ethanolamine utilization protein Amino acid transport and metabolism 62182656 Common - putative phage baseplate component SC4086 21 COG4540 gpV, Phage P2 baseplate assembly protein gpV General function prediction only 62182161 Common glyQ glycyl-tRNA synthetase subunit alpha SC3591 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 62179460 Common poxB pyruvate dehydrogenase SC0890 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 62181679 Common dkgA 2,5-diketo-D-gluconate reductase A SC3109 144 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 62178645 Common ygdI putative outer membrane lipoprotein SC0075 10 None None None 62178809 Common yaeQ putative cytoplasmic protein SC0239 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 62182024 Common glpR DNA-binding transcriptional repressor SC3454 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62180791 Common fruK 1-phosphofructokinase SC2221 102 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 62180043 Common ydgP electron transport complex protein RnfG SC1473 57 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 62181510 Common thyA thymidylate synthase SC2940 138 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 62182030 Common gldA glycerol dehydrogenase SC3460 102 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 62182272 Common xylB putative sugar (pentulose and hexulose) kinase SC3702 179 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 62180315 Common tdk thymidine kinase SC1745 94 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 62181556 Common ygfX putative inner membrane protein SC2986 11 None None None 62182349 Common atpA F0F1 ATP synthase subunit alpha SC3779 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 62178863 Common safB putative fimbriae assembly chaparone SC0293 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62179251 Common yqiR putative sigma-54 dependent transcriptional regulator SC0681 167 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 62180087 Common ynfD putative outer membrane protein SC1517 12 None None None 62179349 Common modA molybdate transporter periplasmic protein SC0779 160 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 62181690 Common ygiW putative outer membrane protein SC3120 26 COG3111 COG3111, Uncharacterized conserved protein Function unknown 62179008 Common phoB DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) SC0438 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62181381 Common sicP chaparone, related to virulence SC2811 3 None None None 62178713 Common ppdD putative major pilin subunit SC0143 35 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 62182172 Common sgbU putative L-xylulose 5-phosphate 3-epimerase SC3602 23 COG3623 SgaU, Putative L-xylulose-5-phosphate 3-epimerase Carbohydrate transport and metabolism 62180232 Common - hypothetical protein SC1662 9 None None None 162139525 Common yidQ hypothetical protein SC3733 11 COG5645 COG5645, Predicted periplasmic lipoprotein General function prediction only 62179019 Common secD preprotein translocase subunit SecD SC0449 222 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 62180239 Common yjgI oxidoreductase SC1669 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62181155 Common - putative bacteriophage protein SC2585 19 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 62181665 Common yqhA hypothetical protein SC3095 55 COG2862 COG2862, Predicted membrane protein Function unknown 62178581 Common yaaI hypothetical protein SC0011 4 None None None 62179935 Common ydiE hypothetical protein SC1365 6 COG4256 HemP, Hemin uptake protein Inorganic ion transport and metabolism 62180888 Common nuoL NADH dehydrogenase subunit L SC2318 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 62181906 Common yrdB putative periplasmic protein SC3336 9 None None None 62179002 Common yaiE hypothetical protein SC0432 52 COG3123 COG3123, Uncharacterized protein conserved in bacteria Function unknown 62178958 Pathogen - putative inner membrane protein SC0388 1 None None None 62182772 Common cutA divalent-cation tolerance protein CutA SC4202 102 COG1324 CutA, Uncharacterized protein involved in tolerance to divalent cations Inorganic ion transport and metabolism 62181621 Common mutY adenine DNA glycosylase SC3051 231 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 62181007 Pathogen yfeL putative membrane carboxypeptidase (penicillin-binding protein) SC2437 1 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 62182524 Common sbp sulfate transporter subunit SC3954 89 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 62179207 Common ybdO putative transcriptional regulator, LysR family SC0637 133 COG0583 LysR, Transcriptional regulator Transcription 62178874 Common tinR transcriptional regulator SC0304 147 COG1522 Lrp, Transcriptional regulators Transcription 62180415 Common yebT putative inner membrane protein SC1845 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 62179725 Common ycfF purine nucleoside phosphoramidase SC1155 223 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 62181479 Common sdaC putative HAAAP family, serine transport protein SC2909 36 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62179556 Common lycV Gifsy-2 prophage lysozyme SC0986 51 COG3772 COG3772, Phage-related lysozyme (muraminidase) General function prediction only 162139541 Common deaD ATP-dependent RNA helicase DeaD SC3221 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 62180194 Pathogen dpr putative dipicolinate reductase SC1624 2 None None None 62179797 Pathogen - Gifsy-1 prophage minor tail protein SC1227 3 None None None 62179308 Common sdhA succinate dehydrogenase flavoprotein subunit SC0738 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 62181581 Common pgk phosphoglycerate kinase SC3011 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 62180035 Common ydhA hypothetical protein SC1465 12 COG3895 COG3895, Predicted periplasmic protein General function prediction only 62179679 Common bssS biofilm formation regulatory protein BssS SC1109 11 None None None 62181489 Common fucR DNA-binding transcriptional activator SC2919 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62181413 Common - putative permease SC2843 76 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 62180588 Pathogen - putative cytoplasmic protein SC2018 4 None None None 62182588 Common trmA tRNA (uracil-5-)-methyltransferase SC4018 176 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 62180819 Pathogen msgA homolog of virulence protein MsgA SC2249 1 None None None 62181753 Pathogen yhaL putative cytoplasmic protein SC3183 2 None None None 62182819 Common yjfL putative inner membrane protein SC4249 29 COG3766 COG3766, Predicted membrane protein Function unknown 62181894 Common yhdJ putative methyltransferase SC3324 141 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 62180479 Common aspS aspartyl-tRNA synthetase SC1909 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62181085 Common yfgJ putative cytoplasmic protein SC2515 10 None None None 62178967 Common jen putative inner membrane protein SC0397 221 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180296 Common yciE putative cytoplasmic protein SC1726 25 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 62180727 Common yegT putative MFS family transport protein SC2157 55 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62182305 Common ccmG heme lyase disulfide oxidoreductase, cytocyhrome c-type biogenesis SC3735 115 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 62178913 Pathogen stx hypothetical protein SC0343 1 None None None 62179596 Common yccF hypothetical protein SC1026 39 COG3304 COG3304, Predicted membrane protein Function unknown 62182380 Common ilvA threonine dehydratase SC3810 222 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 62181743 Common yqjA putative DedA family, membrane protein SC3173 157 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 62182529 Common farR putative regulatory protein, gntR family SC3959 113 COG2188 PhnF, Transcriptional regulators Transcription 62182577 Common yijO paral putative regulator (AraC/XylS family) SC4007 119 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 62181255 Common smpA hypothetical protein SC2685 59 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 62179901 Common nadE NAD synthetase SC1331 131 COG0171 NadE, NAD synthase Coenzyme metabolism 62182605 Common rplJ 50S ribosomal protein L10 SC4035 188 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 62182932 Common uxuR DNA-binding transcriptional repressor SC4362 143 COG2186 FadR, Transcriptional regulators Transcription 62179639 Common wraB trp-repressor binding protein SC1069 103 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 62180499 Common motB flagellar motor protein MotB SC1929 115 COG1360 MotB, Flagellar motor protein Cell motility and secretion 62181240 Common yvrE putative cytoplasmic protein SC2670 81 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 62180632 Common pduT Propanediol utilization: polyhedral bodies SC2062 32 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62180341 Common hemA glutamyl-tRNA reductase SC1771 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 62179668 Common mdoH glucosyltransferase MdoH SC1098 53 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 62178720 Common pdhR transcriptional regulator PdhR SC0150 150 COG2186 FadR, Transcriptional regulators Transcription 62180572 Pathogen - hypothetical protein SC2002 1 None None None 62182814 Common vacB exoribonuclease R SC4244 203 COG0557 VacB, Exoribonuclease R Transcription 162139612 Common rnhA ribonuclease H SC0259 178 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 62182495 Common fdoI formate dehydrogenase-O subunit gamma SC3925 69 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 62181040 Common tktB transketolase SC2470 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 62181917 Common zntR zinc-responsive transcriptional regulator SC3347 157 COG0789 SoxR, Predicted transcriptional regulators Transcription 62182436 Common udp uridine phosphorylase SC3866 100 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 62181517 Common tas putative aldo/keto reductase SC2947 194 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 62182209 Common rfaY lipopolysaccharide core biosynthesis protein SC3639 4 COG0661 AarF, Predicted unusual protein kinase General function prediction only 62180698 Common yegD putative chaperone SC2128 228 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 162139596 Common htrB lipid A biosynthesis lauroyl acyltransferase SC1102 96 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 62180958 Common yfcN hypothetical protein SC2388 68 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 62181327 Pathogen - putative cytoplasmic protein SC2757 1 None None None 62182050 Common ggt gamma-glutamyltranspeptidase periplasmic precursor SC3480 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 62179993 Common sseE Secretion system effector SseE SC1423 3 None None None 62182192 Common cysE serine acetyltransferase SC3622 212 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 62182687 Common dinF DNA-damage-inducible SOS response protein SC4117 146 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 62181480 Common sdaB L-serine dehydratase (L-threonine deaminase 2) SC2910 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 162139502 Common ulaA ascorbate-specific PTS system enzyme IIC SC4257 36 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 62180057 Common tus DNA replication terminus site-binding protein SC1487 14 None None None 62178757 Common sfsA sugar fermentation stimulation protein A SC0187 105 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 62180681 Common wcaF putative colanic acid biosynthesis acetyltransferase WcaF SC2111 132 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 62181636 Common - putative amino acid transporter SC3066 147 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62180153 Common ygdR putative outer membrane lipoprotein SC1583 13 None None None 62180607 Common cbiF synthesis of vitamin B12 adenosyl cobalamide precursor SC2037 202 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 62181195 Pathogen - putative bacteriophage protein SC2625 2 None None None 62181388 Common sicA surface presentation of antigens; secretory proteins SC2818 18 None None None 62181793 Common pnp polynucleotide phosphorylase/polyadenylase SC3223 240 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 62181002 Common - putative cytoplasmic protein SC2432 4 None None None 62180814 Common yejL putative cytoplasmic protein SC2244 18 COG3082 COG3082, Uncharacterized protein conserved in bacteria Function unknown 62178950 Common stbD putative fimbriae; usher SC0380 10 None None None 62179714 Common acpP acyl carrier protein SC1144 182 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62179681 Common pyrC dihydroorotase SC1111 87 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 62179128 Common gip hydroxypyruvate isomerase SC0558 84 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 62179814 Common - hypothetical protein SC1244 24 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 62182717 Common yjcD putative xanthine/uracil permease family SC4147 134 COG2252 COG2252, Permeases General function prediction only 62179398 Common ybiF threonine and homoserine efflux system SC0828 77 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 62180966 Common pgtE outer membrane protease SC2396 12 COG4571 OmpT, Outer membrane protease Cell envelope biogenesis, outer membrane 62182253 Common cigR putative inner membrane protein SC3683 6 None None None 62179434 Common ybjL hypothetical protein SC0864 57 COG2985 COG2985, Predicted permease General function prediction only 62181681 Common hit putative diadenosine tetraphosphate (Ap4A) hydrolase SC3111 118 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 62182848 Common cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein SC4278 127 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 62182404 Common wecG putative UDP-N-acetyl-D-mannosaminuronic acid transferase SC3834 109 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 62182506 Common rhaA L-rhamnose isomerase SC3936 23 COG4806 RhaA, L-rhamnose isomerase Carbohydrate transport and metabolism 62182484 Common yihV putative sugar kinase SC3914 164 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62182688 Pathogen - putative cytoplasmic protein SC4118 1 None None None 62178750 Common panD aspartate alpha-decarboxylase SC0180 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 62181336 Common srlE PTS family, glucitol/sorbitol-specific IIB component, one of two IIC components SC2766 22 COG3732 SrlE, Phosphotransferase system sorbitol-specific component IIBC Carbohydrate transport and metabolism 62181822 Common yrbG putative calcium/sodium:proton antiporter SC3252 130 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 62179046 Common yajQ nucleotide-binding protein SC0476 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 62181707 Common dsbA putative thiol-disulfide isomerase and thioredoxin SC3137 38 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 62180142 Common nmpC new outer membrane protein; predicted bacterial porin SC1572 27 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62182012 Common yhgH gluconate periplasmic binding protein SC3442 165 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 62181476 Common syd SecY interacting protein Syd SC2906 19 None None None 62181423 Common - putative cytoplasmic protein SC2853 10 COG4332 COG4332, Uncharacterized protein conserved in bacteria Function unknown 62182998 Common trpR Trp operon repressor SC4428 22 COG2973 TrpR, Trp operon repressor Transcription 62182364 Common rbsD D-ribose high-affinity transport system; membrane-associated protein SC3794 44 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 62182854 Common ytfM putative outer membrane protein SC4284 127 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 62180688 Common wzb tyrosine phosphatase SC2118 76 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 62181971 Common yhfK putative inner membrane protein SC3401 64 COG1289 COG1289, Predicted membrane protein Function unknown 62181103 Common fdx [2FE-2S] ferredoxin, electron carrer protein, believed to be involved in assembly of Fe-S clusters SC2533 83 COG0633 Fdx, Ferredoxin Energy production and conversion 62181525 Common araE MFS family, L-arabinose: proton symport protein (low-affinity transporter) SC2955 176 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179154 Common TnpR transposase of Tn10 SC0584 19 None None None 62179811 Common sopB SopB protein SC1241 18 COG1475 Spo0J, Predicted transcriptional regulators Transcription 62179200 Common ybdB hypothetical protein SC0630 71 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 62180306 Common yciU dsDNA-mimic protein SC1736 18 COG3099 COG3099, Uncharacterized protein conserved in bacteria Function unknown 62179958 Common ydjN putative Na+-dicarboxylate symporter SC1388 136 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 62180920 Common yfcG putative glutathione S-transferase SC2350 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62182449 Common fadA 3-ketoacyl-CoA thiolase SC3879 183 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 62182250 Common marT putative transcriptional regulatory protein SC3680 13 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62180175 Common tehB tellurite resistance protein TehB SC1605 69 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 62181297 Common ygaU hypothetical protein SC2727 53 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 62179158 Common fimZ transcriptional regulator FimZ SC0588 207 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62179910 Common cedA cell division modulator SC1340 6 None None None 62179014 Common tsaA putative thiol - alkyl hydroperoxide reductase SC0444 218 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 62181998 Common yrfG putative hydrolase SC3428 41 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 62180219 Common ydaO C32 tRNA thiolase SC1649 166 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 62179989 Common sseB Secretion system effector SseB SC1419 5 None None None 62182264 Common - putative inner membrane protein SC3694 5 None None None 62180398 Common yebN hypothetical protein SC1828 66 COG1971 COG1971, Predicted membrane protein Function unknown 62181946 Common hopD leader peptidase HopD SC3376 104 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 62180258 Common sapD ABC superfamily (atp-binding), peptide transport protein SC1688 249 COG4170 SapD, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 62179948 Common aroE quinate/shikimate dehydrogenase SC1378 224 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 62179290 Common potE APC family, putrescine/ornithine antiporter SC0720 181 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62181602 Common sprT hypothetical protein SC3032 26 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 62182476 Common - putative cytoplasmic protein SC3906 6 None None None 62182996 Common yjjK putative ABC transporter ATP-binding protein SC4426 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 62182888 Common yfcC putative arginine repressor SC4318 38 COG1288 COG1288, Predicted membrane protein Function unknown 62180407 Common - putative outer membrane or exported SC1837 8 None None None 62181425 Common - putative cytoplasmic protein SC2855 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180012 Common ssaT Secretion system apparatus SsaT SC1442 108 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 62182886 Pathogen yjgG putative cytoplasmic protein SC4316 1 None None None 62181397 Common invB surface presentation of antigens; secretory proteins SC2827 5 None None None 62181331 Common recX recombination regulator RecX SC2761 66 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 62182402 Common - 4-alpha-L-fucosyltransferase SC3832 18 None None None 162139614 Common proS prolyl-tRNA synthetase SC0241 249 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62178976 Common yahN paral putative transport protein SC0406 122 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 62181177 Common - hypothetical protein SC2607 18 COG3566 COG3566, Uncharacterized protein conserved in bacteria Function unknown 62180960 Common fadJ multifunctional fatty acid oxidation complex subunit alpha SC2390 189 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 62179632 Common yccD chaperone-modulator protein CbpM SC1062 8 None None None 62182387 Pathogen punC putative inner membrane protein SC3817 2 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 62179731 Common ndh respiratory NADH dehydrogenase 2; cupric reductase SC1161 217 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 62179690 Common flgA flagellar basal body P-ring biosynthesis protein FlgA SC1120 27 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 62181538 Common stdB putative outer membrane usher protein SC2968 28 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62179753 Common purB adenylosuccinate lyase SC1183 228 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 62181353 Common hycD hydrogenase 3, membrane subunit (part of FHL complex) SC2783 182 COG0650 HyfC, Formate hydrogenlyase subunit 4 Energy production and conversion 62179505 Common rpsA 30S ribosomal protein S1 SC0935 216 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 62182646 Common - putative cytoplasmic protein SC4076 2 None None None 62178738 Common cueO multicopper oxidase SC0168 124 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 62183004 Common creC sensory histidine kinase CreC SC4434 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62178797 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase SC0227 188 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 62179987 Common ssaE Secretion system effector SsaE SC1417 2 None None None 62179480 Common cydC cysteine/glutathione ABC transporter membrane/ATP-binding component SC0910 249 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 62181579 Common yggB mechanosensitive channel MscS SC3009 195 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62180906 Common yfbU hypothetical protein SC2336 18 COG3013 COG3013, Uncharacterized conserved protein Function unknown 62179748 Common pepT peptidase T SC1178 62 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 62182475 Common - putative periplasmic protein SC3905 6 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 62181650 Common gsp bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase SC3080 53 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 62180500 Common motA flagellar motor protein MotA SC1930 116 COG1291 MotA, Flagellar motor component Cell motility and secretion 62180987 Common xapR DNA-binding transcriptional activator SC2417 184 COG0583 LysR, Transcriptional regulator Transcription 62179299 Common ybgH putative POT family transport protein SC0729 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 62180566 Common yedJ hypothetical protein SC1996 61 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 62181338 Common srlD sorbitol-6-phosphate dehydrogenase SC2768 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62180210 Common ynbE putative outer membrane lipoprotein SC1640 27 None None None 62182459 Common yihE predicted kinase SC3889 51 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 62180149 Common yddE hypothetical protein SC1579 121 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 62179256 Common ybeU putative cytoplasmic protein SC0686 5 None None None 62182142 Pathogen yhjX hypothetical protein yhjX SC3572 1 None None None 62181142 Common acpS 4'-phosphopantetheinyl transferase SC2572 161 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 62180265 Common yciW putative cytoplasmic protein SC1695 9 COG4950 COG4950, Uncharacterized protein conserved in bacteria Function unknown 62180761 Common yohI tRNA-dihydrouridine synthase C SC2191 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 62180004 Common ssaM Secretion system apparatus SsaM SC1434 4 None None None 62180855 Common glpQ glycerophosphodiester phosphodiesterase SC2285 115 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 62181067 Common purN phosphoribosylglycinamide formyltransferase SC2497 220 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 62182291 Common - putative periplasmic protein SC3721 4 None None None 62180875 Common menE O-succinylbenzoic acid--CoA ligase SC2305 211 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62181059 Common cdaR putative regulatory protein SC2489 44 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 62180652 Common hisD histidinol dehydrogenase SC2082 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 162139555 Common grpE heat shock protein GrpE SC2683 231 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 162139562 Common gcvR glycine cleavage system transcriptional repressor SC2485 32 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 62181595 Common - putative outer membrane lipoprotein SC3025 7 None None None 62181218 Common srmB ATP-dependent RNA helicase SrmB SC2648 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 62179741 Common cobB NAD-dependent deacetylase SC1171 150 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 62181172 Common - putative bacteriophage protein SC2602 6 None None None 62178907 Common - 43L-like protein SC0337 6 None None None 62179687 Common mviN putative virulence factor SC1117 190 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 62179739 Common ycfW outer membrane-specific lipoprotein transporter subunit LolE SC1169 155 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 62182513 Common ygiK putative C4-dicarboxylate transport system SC3943 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 62182496 Common fdoH formate dehydrogenase-O, Fe-S subunit SC3926 162 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62181689 Common ygiV putative bacterial regulatory helix-turn-helix proteins, araC family SC3119 88 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 62182447 Common fre FMN reductase SC3877 109 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 62180335 Common chaA calcium/sodium:proton antiporter SC1765 55 COG0387 ChaA, Ca2+/H+ antiporter Inorganic ion transport and metabolism 62180240 Common - putative aldo/keto reductase family SC1670 171 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 62182635 Common - putative cytoplasmic protein SC4065 31 COG4405 COG4405, Uncharacterized protein conserved in bacteria Function unknown 62180782 Common sdhL putative D-serine dehydratase SC2212 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 62179577 Pathogen - hypothetical protein SC1007 1 None None None 62182615 Common thiC thiamine biosynthesis protein ThiC SC4045 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 62181904 Pathogen - hypothetical protein SC3334 1 None None None 62181943 Common rplD 50S ribosomal protein L4 SC3373 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 62181814 Common nlp DNA-binding transcriptional activator of maltose metabolism SC3244 22 COG3423 Nlp, Predicted transcriptional regulator Transcription 62181824 Common yrbI 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase SC3254 107 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 62181657 Common hybD predicted maturation element for hydrogenase 2 SC3087 82 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 62182181 Common mtlR mannitol repressor protein SC3611 18 COG3722 MtlR, Transcriptional regulator Transcription 62179220 Common citF citrate lyase alpha chain/citrate-ACP transferase SC0650 31 COG3051 CitF, Citrate lyase, alpha subunit Energy production and conversion 62180383 Common slp putative outer membrane protein SC1813 29 COG3065 Slp, Starvation-inducible outer membrane lipoprotein Cell envelope biogenesis, outer membrane 62180513 Common tyrP HAAAP family, tyrosine-specific transport protein SC1943 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62182202 Common kbl 2-amino-3-ketobutyrate coenzyme A ligase SC3632 192 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 62181433 Common ftsB cell divison protein FtsB SC2863 62 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 62179165 Pathogen - hypothetical protein SC0595 1 None None None 62181531 Common yqeG putative transport protein SC2961 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62181188 Pathogen - Gifsy-2 prophage protein SC2618 1 None None None 62181346 Common hydN electron transport protein HydN SC2776 154 COG1142 HycB, Fe-S-cluster-containing hydrogenase components 2 Energy production and conversion 62180285 Common btuR cob(I)yrinic acid a,c-diamide adenosyltransferase SC1715 138 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 62182217 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase SC3647 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 62179076 Common amtB ammonium transporter SC0506 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 62182690 Common zur zinc uptake transcriptional repressor SC4120 131 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 62178854 Common rhs Rhs-family protein SC0284 75 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 62180348 Common ychF translation-associated GTPase SC1778 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 62180177 Common rimL ribosomal-protein-L7/L12-serine acetyltransferase SC1607 62 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 62178606 Common - putative glycosyl hydrolase SC0036 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 62180134 Common osmC putative resistance protein, osmotically inducible SC1564 80 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 62180444 Pathogen vtaP Gifsy-1 prophage VtaP SC1874 3 None None None 62179913 Common yniC predicted hydrolase SC1343 174 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 62179100 Pathogen - hypothetical protein SC0530 1 None None None 62181858 Pathogen - putative inner membrane protein SC3288 2 COG1767 CitG, Triphosphoribosyl-dephospho-CoA synthetase Coenzyme metabolism 62179861 Common yeaL hypothetical protein SC1291 28 COG2707 COG2707, Predicted membrane protein Function unknown 62181062 Common yfgD putative arsenate reductase SC2492 110 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 162139494 Common slt lytic murein transglycosylase SC4427 174 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 62180393 Pathogen - putative cytoplasmic protein SC1823 2 None None None 62180459 Common eda keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase SC1889 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 62179175 Common pheP phenylalanine transporter SC0605 155 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62179710 Common plsX fatty acid/phospholipid synthesis protein SC1140 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 62182680 Common lamB maltoporin SC4110 27 COG4580 LamB, Maltoporin (phage lambda and maltose receptor) Carbohydrate transport and metabolism 62182063 Common yhhK putative acetyltransferase SC3493 13 None None None 62179938 Common pps phosphoenolpyruvate synthase SC1368 234 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 62178704 Common mutT nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP SC0134 160 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 62180787 Common yeiE putative DNA-binding transcriptional regulator SC2217 186 COG0583 LysR, Transcriptional regulator Transcription 62182955 Common tsr methyl-accepting chemotaxis protein I, serine sensor receptor SC4385 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62178998 Common yaiI hypothetical protein SC0428 96 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 62178927 Common - coat protein SC0357 4 None None None 62180128 Pathogen - putative multidrug efflux protein SC1558 1 None None None 62180247 Common ycjF hypothetical protein SC1677 42 COG3768 COG3768, Predicted membrane protein Function unknown 62178791 Common uppS undecaprenyl pyrophosphate synthase SC0221 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 62178840 Pathogen - hypothetical protein SC0270 3 None None None 62182285 Common ilvN acetolactate synthase 1 regulatory subunit SC3715 118 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 62182391 Common trxA thioredoxin SC3821 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 62182726 Common nrfA cytochrome c nitrite reductase SC4156 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 62178603 Common - putative cytoplasmic protein SC0033 6 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180574 Pathogen - hypothetical protein SC2004 2 None None None 62181763 Common - hypothetical protein SC3193 8 None None None 62182712 Common yjcB putative inner membrane protein SC4142 7 None None None 62182924 Common - hypothetical protein SC4354 31 COG3440 COG3440, Predicted restriction endonuclease Defense mechanisms 62179606 Common yccK sulfurtransferase TusE SC1036 60 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 62179237 Pathogen - hypothetical protein SC0667 3 None None None 62182095 Common yhiR putative cytoplasmic protein SC3525 85 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 62182082 Common acpT holo-(acyl carrier protein) synthase 2 SC3512 49 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 62180683 Common wcaD putative colanic acid polymerase SC2113 6 None None None 62182547 Common yiiU putative cytoplasmic protein SC3977 21 COG3074 COG3074, Uncharacterized protein conserved in bacteria Function unknown 62180974 Common - putative cytoplasmic protein SC2404 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178941 Common insF putative IS3 transposase SC0371 146 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62179121 Common sfbA putative ABC-type transport system ATPase component/cell division protein SC0551 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 62180882 Common elaA hypothetical protein SC2312 74 COG2153 ElaA, Predicted acyltransferase General function prediction only 62181054 Common dapA dihydrodipicolinate synthase SC2484 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 62181896 Common envR DNA-binding transcriptional regulator SC3326 66 COG1309 AcrR, Transcriptional regulator Transcription 62179472 Common - probable integrase remnant SC0902 75 None None None 62180842 Common yojN phosphotransfer intermediate protein in two-component regulatory system with RcsBC SC2272 140 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62181459 Common stfA putative fimbrial subunit SC2889 8 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62181537 Common stdC putative fimbrial chaparone protein SC2967 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 162139610 Common rdgC recombination associated protein SC0433 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 62180230 Common ydcN putative transcriptional regulator SC1660 96 COG1396 HipB, Predicted transcriptional regulators Transcription 62178731 Common kdgT 2-keto-3-deoxygluconate permease SC0161 27 None None None 62179064 Common cypD peptidyl-prolyl cis-trans isomerase (rotamase D) SC0494 159 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 62181781 Common yhbP hypothetical protein SC3211 20 COG3787 COG3787, Uncharacterized protein conserved in bacteria Function unknown 62179645 Pathogen - hypothetical protein SC1075 1 None None None 62181245 Common trmD tRNA (guanine-N(1)-)-methyltransferase SC2675 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 62178785 Common map methionine aminopeptidase SC0215 246 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 62180019 Common purR DNA-binding transcriptional repressor PurR SC1449 129 COG1609 PurR, Transcriptional regulators Transcription 62179566 Common ail Gifsy-2 prophage attachment and invasion protein-like protein SC0996 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 62182857 Common gudP putative pemease SC4287 147 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62179917 Common pfkB 6-phosphofructokinase 2 SC1347 136 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 62180051 Common malY MalY protein [Includes: Cystathionine beta-lyase SC1481 79 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 62180100 Common yciG putative cytoplasmic protein SC1530 12 COG3729 GsiB, General stress protein General function prediction only 62180140 Common fdnH formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible SC1570 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62179852 Common yoaG putative cytoplasmic protein SC1282 5 None None None 62179197 Common entE enterobactin synthase subunit E SC0627 223 COG1021 EntE, Peptide arylation enzymes Secondary metabolites biosynthesis, transport, and catabolism 62179674 Common yceI hypothetical protein SC1104 112 COG2353 COG2353, Uncharacterized conserved protein Function unknown 62179096 Common ybaB hypothetical protein SC0526 103 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 62178590 Common bcfA fimbrial subunit SC0020 15 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179181 Common - putative regulatory protein SC0611 56 COG1309 AcrR, Transcriptional regulator Transcription 62182741 Common basR DNA-binding response regulator in two-component regulatory system with BasS SC4171 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62182931 Common yczH putative dienelactone hydrolase SC4361 17 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 62178727 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase SC0157 209 COG1049 AcnB, Aconitase B Energy production and conversion 62178694 Common ftsW essential cell division gene, stablilzes FtsZ ring, cytoplasmic membrane required for PBP2 expression SC0124 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 62180436 Pathogen yebW putative inner membrane lipoprotein SC1866 1 None None None 62180854 Common yvbU putative transcriptional regulator, LysR family SC2284 190 COG0583 LysR, Transcriptional regulator Transcription 62179453 Common artP arginine transporter ATP-binding subunit SC0883 249 COG4161 ArtP, ABC-type arginine transport system, ATPase component Amino acid transport and metabolism 62181862 Common ttdB L(+)-tartrate dehydratase subunit beta SC3292 141 COG1838 FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain Energy production and conversion 62179567 Common sodC Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn) SC0997 87 COG2032 SodC, Cu/Zn superoxide dismutase Inorganic ion transport and metabolism 62180712 Common yibG Hypothetical protein yibG precursor SC2142 4 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 62179655 Common ycdY paral putative oxidoreductase component SC1085 20 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 62179404 Common ybiS hypothetical protein SC0834 84 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 62178654 Common apaG ApaG SC0084 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 62180997 Common cysZ putative sulfate transport protein CysZ SC2427 47 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 62180402 Common yobF putative cytoplasmic protein SC1832 4 None None None 62182865 Common - putative cytoplasmic protein SC4295 11 None None None 62178875 Pathogen TioA hypothetical protein SC0305 1 None None None 62178633 Common caiE stimulates carnitine racemase activity of CaiD and CaiB activity SC0063 193 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 62179805 Pathogen - hypothetical protein SC1235 1 None None None 62182961 Common glmS putative glucosamine-fructose-6-phosphate aminotransferase SC4391 213 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 62180593 Common erfK hypothetical protein SC2023 81 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 62180897 Common nuoB NADH dehydrogenase subunit B SC2327 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 62179141 Common arcC carbamate kinase SC0571 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 62180700 Common yegN multidrug efflux system subunit MdtB SC2130 179 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 62182408 Common hemD uroporphyrinogen-III synthase SC3838 51 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 62181717 Common rfaE bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase SC3147 188 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 62182109 Pathogen - putative phage endolysin SC3539 5 COG3772 COG3772, Phage-related lysozyme (muraminidase) General function prediction only 62179314 Common cydA cytochrome d terminal oxidase, polypeptide subunit I SC0744 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 62180158 Common ydcZ putative inner membrane protein SC1588 29 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 62179356 Common hutG formimidoylglutamase SC0786 118 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 62180714 Common yibG Hypothetical protein yibG precursor SC2144 3 None None None 62180850 Common nrdA ribonucleotide-diphosphate reductase subunit alpha SC2280 208 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 62179118 Common ybbA putative ABC transporter ATP-binding protein YbbA SC0548 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 62178906 Pathogen - hypothetical protein SC0336 1 None None None 62181549 Common idi isopentenyl-diphosphate delta-isomerase SC2979 54 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 62179829 Pathogen yccB putative periplasmic protein SC1259 1 None None None 62181468 Common barA hybrid sensory histidine kinase BarA SC2898 226 COG4999 COG4999, Uncharacterized domain of BarA-like signal transduction histidine kinases Signal transduction mechanisms 62179381 Common ybhQ putative inner membrane protein SC0811 6 None None None 62183013 Common arcA DNA-binding response regulator in two-component regulatory system with ArcB or CpxA SC4443 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62182852 Common ytfL putative hemolysin-related protein SC4282 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 62180093 Common rspB putative dehydrogenase SC1523 208 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62181304 Common ygaC hypothetical protein SC2734 8 None None None 62178890 Common crl DNA-binding transcriptional regulator Crl SC0320 13 None None None 62182394 Common wzzE lipopolysaccharide biosynthesis protein WzzE SC3824 15 COG3765 WzzB, Chain length determinant protein Cell envelope biogenesis, outer membrane 62181984 Common gph phosphoglycolate phosphatase SC3414 195 COG0546 Gph, Predicted phosphatases General function prediction only 62182104 Common yurL putative sugar kinase, ribokinase family SC3534 25 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62180111 Common yneI putative succinate-semialdehyde dehydrogenase SC1541 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62181691 Common ygiX DNA-binding response regulator in two-component regulatory system with QseC SC3121 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62179338 Common - putative ABC transport protein SC0768 188 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 62182836 Common priB primosomal replication protein N SC4266 25 COG2965 PriB, Primosomal replication protein N DNA replication, recombination, and repair 62182236 Common spoT bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase SC3666 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 62182335 Common yieG putative xanthine/uracil permeases family SC3765 134 COG2252 COG2252, Permeases General function prediction only 62178578 Common mogA molybdenum cofactor biosynthesis protein SC0008 186 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 62182663 Common - putative cytoplasmic protein SC4093 5 None None None 62178639 Pathogen - hypothetical protein SC0069 1 None None None 62180984 Common yfeC putative negative regulator SC2414 6 None None None 62179186 Common fepA outer membrane porin, receptor for ferric enterobactin (enterochelin) and colicins B and D SC0616 110 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 62179352 Common ybhA predicted hydrolase SC0782 122 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62182673 Common yjbG putative periplasmic protein SC4103 15 None None None 62180673 Common wzxC colanic acid exporter SC2103 106 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 62179429 Common ybjG undecaprenyl pyrophosphate phosphatase SC0859 59 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 62182767 Common phoN non-specific acid phosphatase SC4197 34 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 62180123 Common hupD putative hydrogenase maturation protease SC1553 79 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 62182721 Common ywgG putative inner membrane protein SC4151 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 62179526 Common ompF outer membrane protein 1a (ia;b;f), porin SC0956 31 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62181403 Common - putative ABC-type transport system SC2833 21 COG4453 COG4453, Uncharacterized protein conserved in bacteria Function unknown 62180629 Common pduP Propanediol utilization: CoA-dependent propionaldehyde dehydrogenase SC2059 193 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62182073 Common yhhM putative inner membrane protein SC3503 8 None None None 62178747 Common stiA putative fimbrial subunit SC0177 21 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62178859 Common - putative cytoplasmic protein SC0289 4 None None None 62182535 Common ydeZ putative ABC superfamily (membrane), sugar transport protein SC3965 111 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 62180467 Common msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase SC1897 82 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 62181809 Common obgE GTPase ObgE SC3239 228 COG0536 Obg, Predicted GTPase General function prediction only 62180922 Common hisP histidine/lysine/arginine/ornithine transporter subunit SC2352 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 62181211 Common int Gifsy-1 prophage Int SC2641 82 COG0582 XerC, Integrase DNA replication, recombination, and repair 62179925 Common rplT 50S ribosomal protein L20 SC1355 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 62180022 Common ydhD hypothetical protein SC1452 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 62178662 Common polB DNA polymerase II SC0092 64 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 62182462 Pathogen - hypothetical protein SC3892 1 None None None 62179148 Pathogen - putative inner membrane protein SC0578 1 None None None 62182110 Common yhjB putative transcriptional regulator (LuxR/UhpA familiy) SC3540 166 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62178986 Common ampH beta-lactamase/D-alanine carboxypeptidase SC0416 116 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 62179493 Common ycaM putative APC family, amino-acid transporter SC0923 72 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62178860 Pathogen - hypothetical protein SC0290 1 None None None 62178822 Common yafC putative transcriptional regulator, LysR family SC0252 193 COG0583 LysR, Transcriptional regulator Transcription 62179583 Common ycbX putative iron-sulfur protein SC1013 60 COG3217 COG3217, Uncharacterized Fe-S protein General function prediction only 62181196 Pathogen - unknown protein encoded within prophage CP-933O SC2626 2 None None None 62182153 Common - putative cytoplasmic protein SC3583 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181503 Common ptr protease III SC2933 176 COG1025 Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like Posttranslational modification, protein turnover, chaperones 62182895 Common yjgD hypothetical protein SC4325 23 COG3076 COG3076, Uncharacterized protein conserved in bacteria Function unknown 62181202 Common prpO Gifsy-1 prophage PrpO SC2632 8 None None None 62182806 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase SC4236 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 62181011 Common cysW sulfate/thiosulfate transporter permease subunit SC2441 225 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 62181845 Common nanE N-acetylmannosamine-6-phosphate 2-epimerase SC3275 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 62182246 Common tnpA Transposase SC3676 5 None None None 62178769 Common stfF putative minor fimbrial subunit SC0199 10 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62182718 Common yjcE putative CPA1 family, Na:H transport protein SC4148 108 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 62178912 Common nin Nin-like protein SC0342 14 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 62181132 Common yfhD putative transglycosylase SC2562 87 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 62179872 Pathogen - hypothetical protein SC1302 1 None None None 62179420 Pathogen - hypothetical protein SC0850 1 None None None 62181209 Common - Gifsy-2 prophage protein SC2639 8 None None None 62178897 Pathogen - hypothetical protein SC0327 1 COG1315 COG1315, Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain DNA replication, recombination, and repair 62181790 Common mtr tryptophan permease SC3220 31 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62178611 Common lspA lipoprotein signal peptidase SC0041 195 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62182559 Common - putative arylsulfate sulfotransferase SC3989 10 None None None 62179055 Common cyoA cytochrome o ubiquinol oxidase subunit II SC0485 140 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 62182794 Common yjeM putative APC family, amino-acid transport protein SC4224 39 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62179990 Common - Secretion system chaparone SscA SC1420 14 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 62181833 Common yrbL hypothetical protein SC3263 8 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 62182329 Common yidC putative inner membrane protein translocase component YidC SC3759 214 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 62182738 Common phnA hypothetical protein SC4168 107 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 62181376 Common prgH cell invasion protein SC2806 7 None None None 62179842 Common oxd6E putative inner membrane protein SC1272 224 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62180385 Common yoaA putative DNA helicase SC1815 148 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 62180312 Common oppA ABC superfamily (periplasm), oligopeptide transport protein with chaperone properties SC1742 210 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 62182733 Common gltP glutamate/aspartate:proton symporter SC4163 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 62179751 Common phoQ sensor protein PhoQ SC1181 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62178647 Common - putative secreted protein SC0077 8 None None None 62180684 Common wcaC predicted glycosyl transferase SC2114 22 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62181676 Common yghB putative DedA family, membrane protein SC3106 110 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 62178812 Common yaeB paral putative regulator SC0242 95 COG1720 COG1720, Uncharacterized conserved protein Function unknown 62181184 Common lycV Gifsy-2 prophage lysozyme SC2614 52 COG3772 COG3772, Phage-related lysozyme (muraminidase) General function prediction only 62182163 Common yiaH putative inner membrane protein SC3593 32 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 62181228 Common yfiM hypothetical protein SC2658 13 COG5544 COG5544, Predicted periplasmic lipoprotein General function prediction only 62179275 Common nagB glucosamine-6-phosphate deaminase SC0705 84 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 162139518 Common glnG nitrogen regulation protein NR(I) SC3897 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 62179436 Common grxA glutaredoxin 1 SC0866 44 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 62180557 Common rcsA positive transcriptional regulator of capsular/exo- polysaccharide synthesis (LuxR/UhpA family) SC1987 11 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62182665 Common - putative inner membrane protein SC4095 8 None None None 62180804 Common yejE putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component SC2234 218 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 62179304 Common nei endonuclease VIII SC0734 171 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 162139591 Common lppB putative methyl-accepting chemotaxis protein SC1397 18 COG4238 COG4238, Murein lipoprotein Cell envelope biogenesis, outer membrane 62178977 Common yahO hypothetical protein SC0407 7 None None None 62182313 Common torS hybrid sensory histidine kinase TorS SC3743 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62179509 Pathogen - hypothetical protein SC0939 1 None None None 162139537 Common rplM 50S ribosomal protein L13 SC3283 240 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 62178772 Common hemL glutamate-1-semialdehyde aminotransferase SC0202 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 62180739 Common mrp putative ATPase SC2169 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 62180472 Common ruvB Holliday junction DNA helicase B SC1902 238 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 62181931 Common rpsN 30S ribosomal protein S14 SC3361 209 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 62179330 Common fumB fumarate hydratase Class I anaerobic SC0760 146 COG1838 FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain Energy production and conversion 62179768 Common - putative antirepressor SC1198 23 COG3646 COG3646, Uncharacterized phage-encoded protein Function unknown 62181926 Common rpmD 50S ribosomal protein L30 SC3356 154 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 62178615 Common rihC ribonucleoside hydrolase RihC SC0045 88 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 62178620 Common oag3 oxaloacetate decarboxylase subunit gamma SC0050 9 COG3630 OadG, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit Energy production and conversion 62179923 Common infC translation initiation factor IF-3 SC1353 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 62179904 Common celB N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC SC1334 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 62179979 Common - hypothetical protein SC1409 6 None None None 62179763 Common yfdQ hypothetical protein SC1193 6 COG5532 COG5532, Uncharacterized conserved protein Function unknown 62181958 Common slyX hypothetical protein SC3388 35 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 62180640 Common sbmC DNA gyrase inhibitor SC2070 18 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 62180940 Common truA tRNA pseudouridine synthase A SC2370 236 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 62182098 Common - alpha-ketoglutarate permease SC3528 6 None None None 62182270 Common ptfA putative phosphotransferase system, HPr-related protein SC3700 91 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 62179462 Common hcp hydroxylamine reductase SC0892 76 COG1151 COG1151, 6Fe-6S prismane cluster-containing protein Energy production and conversion 62181364 Common sitA iron transporter: fur regulated SC2794 169 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 62179306 Common gltA type II citrate synthase SC0736 194 COG0372 GltA, Citrate synthase Energy production and conversion 62182758 Common yjiK putative inner membrane protein SC4188 10 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 62182648 Common - putative cytoplasmic protein SC4078 5 None None None 62182856 Common ytfP putative cytoplasmic protein SC4286 30 COG2105 COG2105, Uncharacterized conserved protein Function unknown 62179839 Common oxd6C putative ABC transporter SC1269 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62180235 Common cafR putative bacterial regulatory helix-turn-helix proteins, araC family SC1665 136 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62180462 Pathogen - hypothetical protein SC1892 1 None None None 62179174 Common - putative ATPase involved in DNA repair SC0604 15 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 62182366 Common rbsC ribose ABC transporter permease protein SC3796 128 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 62179372 Common moaC molybdenum cofactor biosynthesis protein C SC0802 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 62180085 Common ynfF putative dimethyl sulphoxide reductase SC1515 183 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62181249 Common corE putative cytochrome c-type biogenesis protein (heme exporter protein C SC2679 55 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 62178780 Common cdaR carbohydrate diacid transcriptional activator CdaR SC0210 48 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 62181662 Pathogen - hypothetical protein SC3092 1 None None None 62182361 Common yieM hypothetical protein SC3791 29 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 62179620 Common hpaR 4-hydroxyphenylacetate catabolism SC1050 75 COG1846 MarR, Transcriptional regulators Transcription 62182839 Common yifZ putative permease SC4269 47 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 62181378 Common hilA invasion protein regulator SC2808 72 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62181721 Common cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase SC3151 190 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 62179622 Common hpaE 4-hydroxyphenylacetate catabolism SC1052 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62181962 Common yheR glutathione-regulated potassium-efflux system ancillary protein KefG SC3392 63 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 62182703 Common uvrA excinuclease ABC subunit A SC4133 239 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 62180848 Common ntrA putative regulatory protein, gntR family SC2278 130 COG1802 GntR, Transcriptional regulators Transcription 62182745 Common adi arginine decarboxylase, catabolic; inducible by acid SC4175 86 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 62181118 Common hcaT putative 3-phenylpropionic acid transporter SC2548 76 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182113 Common yhjE putative MFS family transport protein SC3543 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62181233 Common clpB protein disaggregation chaperone SC2663 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 62182026 Common glpE thiosulfate sulfurtransferase SC3456 96 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 62178715 Common ampD N-acetyl-anhydromuranmyl-L-alanine amidase SC0145 107 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 62180750 Common yehY putative ABC-type proline/glycine betaine transport systems, permease component SC2180 103 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 62179832 Common ibp putative molecular chaperone (small heat shock protein) SC1262 75 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 62180541 Pathogen - putative 50S ribosomal protein SC1971 1 None None None 62182980 Pathogen - putative inner membrane protein SC4410 1 COG5487 COG5487, Small integral membrane protein Function unknown 62180166 Common pdgL Periplasmic dipeptidase for D-ala-D-ala digestion in peptidoglycan SC1596 44 COG2173 DdpX, D-alanyl-D-alanine dipeptidase Cell envelope biogenesis, outer membrane 62181841 Common codB cytosine permease SC3271 73 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 62182893 Common yjgK putative cytoplasmic protein SC4323 31 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 62181164 Common - putative bacteriophage protein SC2594 6 None None None 62180600 Common cbiN cobalt transport protein CbiN SC2030 41 COG1930 CbiN, ABC-type cobalt transport system, periplasmic component Inorganic ion transport and metabolism 62178830 Common dnaQ DNA polymerase III subunit epsilon SC0260 183 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 62181056 Common bcp thioredoxin-dependent thiol peroxidase SC2486 215 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 62181262 Common - large repetitive protein SC2692 34 None None None 62180362 Common emtA membrane-bound lytic murein transglycosylase E SC1792 66 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 62179951 Common ydiL putative cytoplasmic protein SC1381 4 None None None 62181264 Common rtxI putative ABC transporter transmembrane region SC2694 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 62181805 Common rrmJ 23S rRNA methyltransferase J SC3235 138 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 62182958 Common ptrB putative PTS permease SC4388 40 COG3444 COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB Carbohydrate transport and metabolism 62182607 Common rpoB DNA-directed RNA polymerase subunit beta SC4037 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 62180546 Common fliH flagellar assembly protein H SC1976 33 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 62180874 Common yfbJ hypothetical protein SC2304 5 None None None 62178933 Common - DNA transfer protein gp20 SC0363 4 None None None 62179920 Pathogen - hypothetical protein SC1350 1 None None None 62180949 Common yprA putative inner membrane protein SC2379 20 None None None 162139522 Common wecC UDP-N-acetyl-D-mannosamine dehydrogenase SC3826 206 COG0677 WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase Cell envelope biogenesis, outer membrane 62180775 Common mglC beta-methylgalactoside transporter inner membrane component SC2205 126 COG4211 MglC, ABC-type glucose/galactose transport system, permease component Carbohydrate transport and metabolism 62180691 Common yegH putative inner membrane protein SC2121 219 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 62181349 Common hycH processing of HycE (part of the FHL complex) SC2779 13 None None None 62181497 Common ygdL paral putative enzyme SC2927 219 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 62181584 Common - putative inner membrane protein SC3014 18 None None None 62179846 Pathogen - putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain SC1276 2 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62179684 Common yceL multidrug resistance protein MdtH SC1114 111 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181929 Common rplF 50S ribosomal protein L6 SC3359 225 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 62182412 Pathogen - putative inner membrane protein SC3842 1 None None None 62180933 Common rocR putative regulatory protein SC2363 171 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 62181628 Common ach putative acetyl-CoA hydrolase SC3058 100 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 62178676 Common leuD isopropylmalate isomerase small subunit SC0106 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 62179267 Common phoL putative phosphate starvation-inducible protein, ATP-binding SC0697 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 62181310 Common nrdI ribonucleotide reductase stimulatory protein SC2740 37 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 62181242 Common aroF phospho-2-dehydro-3-deoxyheptonate aldolase SC2672 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 62180532 Common fliC+F2048 flagellin SC1962 114 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 62182248 Common misL putative autotransported protein SC3678 36 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62181888 Common accC acetyl-CoA carboxylase biotin carboxylase subunit SC3318 233 COG0439 AccC, Biotin carboxylase Lipid metabolism 62180107 Common marA DNA-binding transcriptional activator MarA SC1537 124 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179813 Common mppA Periplasmic murein peptide-binding protein precurs SC1243 203 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 62180651 Common hisG ATP phosphoribosyltransferase SC2081 203 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 62181113 Common asrB anaerobic sulfite reductase subunit B SC2543 98 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 62181607 Common yqgF Holliday junction resolvase-like protein SC3037 181 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 62181323 Common gshA glutamate--cysteine ligase SC2753 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 62179350 Common modB molybdate ABC transporter permease protein SC0780 179 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 62179895 Pathogen - hypothetical protein SC1325 2 None None None 62179396 Common dps DNA starvation/stationary phase protection protein Dps SC0826 118 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 62180562 Common yodC putative cytoplasmic protein SC1992 5 COG5475 COG5475, Uncharacterized small protein Function unknown 62179746 Common potB spermidine/putrescine ABC transporter membrane protein SC1176 219 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 62181332 Common recA recombinase A SC2762 223 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 62181064 Common uraA uracil transporter SC2494 126 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 62181745 Common yqjC putative periplasmic protein SC3175 9 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 162139598 Common pflA pyruvate formate lyase-activating enzyme 1 SC0924 84 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 62180105 Common ydeD O-acetylserine/cysteine export protein SC1535 71 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 62182332 Common yieE putative cytoplasmic protein SC3762 8 COG2091 Sfp, Phosphopantetheinyl transferase Coenzyme metabolism 62178594 Common bcfF fimbrial subunit SC0024 23 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62182610 Pathogen - putative cytoplasmic protein SC4040 2 None None None 62182934 Pathogen - hypothetical protein SC4364 1 None None None 62180908 Common ackA acetate kinase SC2338 162 COG0282 ackA, Acetate kinase Energy production and conversion 62181286 Common tctD tricarboxylic transport: regulatory protein SC2716 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62179216 Common rnk nucleoside diphosphate kinase regulator SC0646 76 COG0782 GreA, Transcription elongation factor Transcription 62182766 Common TnpA TnpA SC4196 38 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180510 Common yecR putative outer membrane lipoprotein SC1940 6 None None None 62179782 Pathogen VG55 Protein gp55 precursor SC1212 1 None None None 62181638 Common ordL putative oxidoreductase SC3068 99 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 62181697 Common icc cyclic 3',5'-adenosine monophosphate phosphodiesterase SC3127 81 COG1409 Icc, Predicted phosphohydrolases General function prediction only 62182991 Common smp hypothetical protein SC4421 18 COG3726 AhpA, Uncharacterized membrane protein affecting hemolysin expression General function prediction only 62182029 Common - putative periplasmic phosphate-binding protein SC3459 107 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 62181093 Common ndk nucleoside diphosphate kinase SC2523 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 62182190 Common lacI putative transcriptional regulator SC3620 126 COG1609 PurR, Transcriptional regulators Transcription 62178588 Pathogen hmt putative hydroxymethyltransferase SC0018 2 None None None 62180283 Common sohB predicted inner membrane peptidase SC1713 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 62180889 Common nuoK NADH dehydrogenase subunit K SC2319 68 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 62179412 Common ybiK L-asparaginase SC0842 84 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 62178846 Common - putative inner membrane protein SC0276 2 None None None 62181774 Common yraL putative methyltransferase SC3204 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 62181482 Common fucO L-1,2-propanediol oxidoreductase SC2912 174 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 62181452 Common - putative cytoplasmic protein SC2882 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62179190 Common fepE ferric enterobactin (enterochelin) transporter SC0620 14 COG3765 WzzB, Chain length determinant protein Cell envelope biogenesis, outer membrane 62180117 Common ompC putative outer membrane protein SC1547 24 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62179156 Common fimH minor fimbrial subunit SC0586 5 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62181477 Common queF 7-cyano-7-deazaguanine reductase SC2907 83 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 62179164 Pathogen - hypothetical protein SC0594 1 None None None 62179541 Pathogen - hypothetical protein SC0971 1 None None None 62181193 Pathogen - putative bacteriophage protein SC2623 3 None None None 62179111 Common ybbJ putative Membrane protein implicated in regulation of membrane protease activity SC0541 35 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 62180304 Common yciI YciI-like protein SC1734 72 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 62182014 Common gntT GntP family, high-affinity gluconate permease in GNT I system SC3444 77 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 62180055 Common fumA fumarase A (fumarate hydratase class I), aerobic isozyme SC1485 147 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 62180521 Pathogen - hypothetical protein SC1951 1 None None None 62182860 Common mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase SC4290 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 62179030 Common thiL thiamine monophosphate kinase SC0460 203 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 62179640 Pathogen - hypothetical protein SC1070 1 None None None 62182504 Common adh2 putative iron-containing alcohol dehydrogenase SC3934 174 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 62179134 Common glxK glycerate kinase II SC0564 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 162139560 Common pepB aminopeptidase B SC2531 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 62180528 Common fliY cystine transporter subunit SC1958 190 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62181871 Common yhcO putative cytoplasmic protein SC3301 9 COG2732 COG2732, Barstar, RNAse (barnase) inhibitor Transcription 62180797 Common yeiP elongation factor P SC2227 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 62180303 Common tonB transport protein TonB SC1733 30 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 62181891 Common prmA ribosomal protein L11 methyltransferase SC3321 174 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 62179102 Common aes acetyl esterase SC0532 109 COG0657 Aes, Esterase/lipase Lipid metabolism 62182151 Common cspA major cold shock protein SC3581 181 COG1278 CspC, Cold shock proteins Transcription 162139505 Common yjeB transcriptional repressor NsrR SC4243 158 COG1959 COG1959, Predicted transcriptional regulator Transcription 62182018 Pathogen - hypothetical protein SC3448 1 None None None 62182344 Common glmS D-fructose-6-phosphate amidotransferase SC3774 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 62180612 Common cobD cobalamin biosynthesis protein SC2042 149 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 62181421 Common pad putative flavoprotein SC2851 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 62179126 Common allA ureidoglycolate hydrolase SC0556 35 COG3194 DAL3, Ureidoglycolate hydrolase Nucleotide transport and metabolism 62180343 Common ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase SC1773 193 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 62181654 Common hybG hydrogenase 2 accessory protein HypG SC3084 74 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 62179970 Common ycjj putative amino acid permease SC1400 119 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62182795 Common yjeO putative inner membrane protein SC4225 3 None None None 62179720 Common tdk thymidylate kinase SC1150 228 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 62180497 Common cheW purine-binding chemotaxis protein SC1927 118 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 62179048 Common tnp IS903 transposase SC0478 2 None None None 62179946 Common ydiF putative acetyl-CoA:acetoacetyl-CoA transferase beta subunit SC1376 87 COG4670 COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase Lipid metabolism 62182714 Common soxS DNA-binding transcriptional dual regulator SC4144 135 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62180523 Common yecF hypothetical protein SC1953 10 None None None 62180261 Common - putative inner membrane protein SC1691 2 None None None 62180045 Common rnfC electron transport complex protein RnfC SC1475 98 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 62179482 Common trxB thioredoxin reductase SC0912 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 62182973 Common yhcK putative diguanylate cyclase/phosphodiesterase domain 1 SC4403 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 62182278 Common uhpT sugar phosphate antiporter SC3708 48 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62182907 Common idnR L-idonate regulator (GalR/LacI family) SC4337 129 COG1609 PurR, Transcriptional regulators Transcription 62181789 Common - putative cytoplasmic protein SC3219 2 None None None 62179320 Common tolR colicin uptake protein TolR SC0750 107 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 62180868 Common ais aluminum inducible protein SC2298 4 None None None 62180812 Common - putative inner membrane protein SC2242 2 None None None 62181523 Common lysR DNA-binding transcriptional regulator LysR SC2953 175 COG0583 LysR, Transcriptional regulator Transcription 62179864 Common yeaK putative cytoplasmic protein SC1294 16 COG2606 EbsC, Uncharacterized conserved protein Function unknown 62179179 Common nfnB dihydropteridine reductase SC0609 85 COG0778 NfnB, Nitroreductase Energy production and conversion 62181702 Common ygiC putative glutathionylspermidine synthase SC3132 53 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 62182641 Common yaiL putative cytoplasmic protein SC4071 30 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 62181795 Common truB tRNA pseudouridine synthase B SC3225 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 62179260 Common gltL ABC superfamily (atp_bind), glutamate/aspartate transporter SC0690 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 62182088 Common pitA PiT family, low-affinity phosphate transporter SC3518 155 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 62180581 Common ybeQ putative TPR repeat protein SC2011 107 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 62178684 Common ilvH acetolactate synthase 3 regulatory subunit SC0114 191 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 62178869 Common istB hypothetical protein SC0299 84 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 62180403 Common insA Insertion element IS1 1/2/3/5/6 protein insA SC1833 14 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180370 Common dsbB disulfide bond formation protein B SC1800 55 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 62182900 Common yjgN putative inner membrane protein SC4330 32 COG4269 COG4269, Predicted membrane protein Function unknown 62180929 Common rocE putative amino acid transporter SC2359 88 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 62182525 Common ushB CDP-diacylglycerol pyrophosphatase SC3955 19 COG2134 Cdh, CDP-diacylglycerol pyrophosphatase Lipid metabolism 62179365 Common bioD dithiobiotin synthetase SC0795 161 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 62181134 Common yfhB hypothetical protein SC2564 13 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 62179283 Common fur ferric uptake regulator SC0713 196 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 62181825 Common yrbK hypothetical protein SC3255 25 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 62182816 Common yjfI putative cytoplasmic protein SC4246 15 COG3789 COG3789, Uncharacterized protein conserved in bacteria Function unknown 62179554 Pathogen gtgA Gifsy-2 prophage GtgA SC0984 1 None None None 62180638 Common yeeX hypothetical protein SC2068 22 COG2926 COG2926, Uncharacterized protein conserved in bacteria Function unknown 62179884 Common ydjE Hypothetical metabolite transport protein ydjE SC1314 142 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62179662 Common csgA cryptic curlin major subunit SC1092 12 None None None 62180237 Pathogen - putative outer membrane lipoprotein SC1667 1 None None None 62180783 Common serB putative phosphoserine phosphatase SC2213 149 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 62181251 Common - putative cytoplasmic protein SC2681 3 None None None 62179551 Common ninG Gifsy-1 prophage protein SC0981 11 None None None 62181221 Common yfiD autonomous glycyl radical cofactor GrcA SC2651 52 COG3445 COG3445, Acid-induced glycyl radical enzyme General function prediction only 162139607 Common aefA potassium efflux protein KefA SC0519 224 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62180028 Common ydhF putative aldo/keto reductase SC1458 176 COG4989 COG4989, Predicted oxidoreductase General function prediction only 62181751 Common yhaJ putative transcriptional regulator, LysR family SC3181 152 COG0583 LysR, Transcriptional regulator Transcription 62182100 Common rpiR Protein rpiR SC3530 93 COG1737 RpiR, Transcriptional regulators Transcription 62182774 Common aspA aspartate ammonia-lyase SC4204 220 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 62182911 Common idnK D-gluconate kinase SC4341 80 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 62180431 Common umuC error-prone repair: component of DNA polymerase V with UmuD' SC1861 6 None None None 62181006 Common yfeK hypothetical protein SC2436 6 None None None 62181880 Common mreD rod shape-determining protein MreD SC3310 50 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 62181663 Common yghW putative cytoplasmic protein SC3093 8 None None None 62179677 Common yceO putative inner membrane protein SC1107 6 None None None 62180121 Common hyaE putative hydrogenase SC1551 14 None None None 62179443 Common potI putrescine transporter subunit: membrane component of ABC superfamily SC0873 185 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 62182170 Common lyxK L-xylulose kinase, cryptic SC3600 10 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 62182840 Common ytfB putative cell envelope opacity-associated protein A SC4270 14 COG3061 OapA, Cell envelope opacity-associated protein A Cell envelope biogenesis, outer membrane 62179799 Common vmtH Gifsy-1 prophage VmtH SC1229 44 COG5281 COG5281, Phage-related minor tail protein Function unknown 62179004 Common yajF fructokinase SC0434 166 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 62182179 Common mtlA PTS family, mannitol-specific enzyme IIABC components SC3609 69 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 62182048 Common - putative cytoplasmic protein SC3478 12 COG5426 COG5426, Uncharacterized membrane protein Function unknown 62179598 Common mgsA methylglyoxal synthase SC1028 88 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism 62182595 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase SC4025 204 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 62182068 Common ftsX cell division protein FtsX SC3498 118 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 62180208 Common - putative inner membrane protein SC1638 52 COG3791 COG3791, Uncharacterized conserved protein Function unknown 62180457 Common yebG DNA damage-inducible protein YebG SC1887 19 COG3141 COG3141, Uncharacterized protein conserved in bacteria Function unknown 62182571 Common talC fructose-6-phosphate aldolase SC4001 118 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 62180196 Common sseJ translocated effector: regulated by SPI-2 SC1626 19 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 62181153 Pathogen - hypothetical protein SC2583 1 None None None 62180423 Common ycgX putative cytoplasmic protein SC1853 7 COG5562 COG5562, Phage envelope protein General function prediction only 62178952 Common stbB putative fimbriae; chaparone SC0382 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62180490 Common flhA flagellar biosynthesis protein A SC1920 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 62178800 Common rnhB ribonuclease HII SC0230 238 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 62181723 Common folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase SC3153 99 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 62180002 Common ssaK Secretion system apparatus SsaK SC1432 4 None None None 62181915 Common trkA potassium transporter peripheral membrane component SC3345 152 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 62179637 Common agp glucose-1-phosphatase/inositol phosphatase SC1067 17 None None None 62180981 Common mntH manganese transport protein MntH SC2411 109 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 62179538 Common - Gifsy-1 prophage protein SC0968 4 None None None 62179195 Common fepB iron-enterobactin transporter periplasmic binding protein SC0625 50 COG4592 FepB, ABC-type Fe2+-enterobactin transport system, periplasmic component Inorganic ion transport and metabolism 62180586 Pathogen - hypothetical protein SC2016 1 None None None 62182259 Common ptnD putative phosphotransferase system enzyme II SC3689 40 COG3716 ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID Carbohydrate transport and metabolism 62179009 Common phoR phosphate regulon sensor protein SC0439 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 62179649 Common - N-acetylmannosamine-6-phosphate 2-epimerase SC1079 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 62181415 Common ygbM hypothetical protein SC2845 74 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 62182208 Common rfaZ lipopolysaccharide core biosynthesis protein SC3638 7 None None None 62182520 Common cpxR DNA-binding response regulator in two-component regulatory system with CpxA SC3950 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62180021 Common ydhO putative cell wall-associated hydrolase SC1451 133 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 62181515 Common ygdQ putative integral membrane transport protein SC2945 94 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 62181655 Common hypA hydrogenase nickel incorporation protein HybF SC3085 99 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 62182620 Common yjaG putative cytoplasmic protein SC4050 26 COG3068 COG3068, Uncharacterized protein conserved in bacteria Function unknown 62181435 Common - adenylylsulfate kinase SC2865 145 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 162139547 Common yqgE hypothetical protein SC3036 131 COG1678 COG1678, Putative transcriptional regulator Transcription 62180709 Pathogen insA hypothetical protein SC2139 7 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180884 Common cheV putative chemotaxis signal transduction protein SC2314 129 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 62180849 Common ubiG 3-demethylubiquinone-9 3-methyltransferase SC2279 167 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 62178852 Common - Rhs-family protein SC0282 57 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 62182482 Common yihT putative aldolase SC3912 25 COG3684 LacD, Tagatose-1,6-bisphosphate aldolase Carbohydrate transport and metabolism 62182065 Common - hypothetical protein SC3495 30 COG4453 COG4453, Uncharacterized protein conserved in bacteria Function unknown 62179931 Common btuD vitamin B12-transporter ATPase SC1361 249 COG4138 BtuD, ABC-type cobalamin transport system, ATPase component Coenzyme metabolism 62179017 Common tgt queuine tRNA-ribosyltransferase SC0447 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 62180126 Common mbhS putative hydrogenase-1 small subunit SC1556 5 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 62180221 Common zntB zinc transporter SC1651 100 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 62181550 Common lysS lysyl-tRNA synthetase SC2980 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 62180446 Common int putative phage integrase protein SC1876 17 None None None 62179520 Common mukF condesin subunit F SC0950 19 COG3006 MukF, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 62182682 Common ubiC chorismate pyruvate lyase SC4112 22 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 62179177 Pathogen - hypothetical protein SC0607 1 None None None 62179706 Pathogen - hypothetical protein SC1136 1 None None None 62180530 Common fliA flagellar biosynthesis sigma factor SC1960 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 62179608 Pathogen - hypothetical protein SC1038 2 None None None 62181847 Common nanA N-acetylneuraminate lyase SC3277 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 62182262 Common - putative phosphotransferase system enzyme IIA SC3692 55 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 62181162 Pathogen - hypothetical protein SC2592 1 None None None 62181474 Common yqcB tRNA pseudouridine synthase C SC2904 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 62182728 Common nrfC putative nitrite reductase; formate-dependent, Fe-S centers SC4158 163 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62182808 Common hflX putative GTPase HflX SC4238 230 COG2262 HflX, GTPases General function prediction only 62178706 Common lysR putative lysR-family transcriptional regulator SC0136 188 COG0583 LysR, Transcriptional regulator Transcription 62181408 Common - hypothetical protein SC2838 2 None None None 62181290 Common tctA tricarboxylic transport SC2720 77 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 62182002 Common pckA phosphoenolpyruvate carboxykinase SC3432 96 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 62182158 Common insK Putative transposase insK for insertion sequence e SC3588 71 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181387 Common sipB cell invasion protein SC2817 8 None None None 62181295 Common gabP gamma-aminobutyrate transporter SC2725 184 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62180824 Common ccmF cytochrome c-type biogenesis protein SC2254 158 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 62181761 Common tdcA DNA-binding transcriptional activator SC3191 184 COG0583 LysR, Transcriptional regulator Transcription 62181851 Common - putative cytoplasmic protein SC3281 5 None None None 62179247 Common rlpB LPS-assembly lipoprotein RplB SC0677 26 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 62179239 Common mrdB cell wall shape-determining protein SC0669 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 62180064 Common ydgC putative inner membrane protein SC1494 14 COG3136 GlpM, Uncharacterized membrane protein required for alginate biosynthesis General function prediction only 62181169 Common - putative bacteriophage protein SC2599 12 None None None 62179564 Common - Gifsy-2 prophage probable minor tail protein SC0994 35 COG5281 COG5281, Phage-related minor tail protein Function unknown 62181359 Common hypC hydrogenase isoenzymes formation protein SC2789 75 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 62181533 Pathogen - hypothetical protein SC2963 1 None None None 62179647 Common phoH hypothetical protein SC1077 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 62181457 Common pyrG CTP synthetase SC2887 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 62182438 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase SC3868 222 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62180511 Common ftn ferritin SC1941 85 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 62179322 Common tolB translocation protein TolB SC0752 158 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 62181501 Common RecD exonuclease V subunit alpha SC2931 142 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 62181181 Pathogen - hypothetical protein SC2611 2 None None None 62179611 Pathogen - putative inner membrane protein SC1041 1 None None None 62181725 Common gcp O-sialoglycoprotein endopeptidase SC3155 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 162139572 Common yeeO predicted multidrug efflux system SC2021 103 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 62179012 Common proY putative APC family, proline transporter SC0442 172 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62178748 Common yadI putative PTS enzyme SC0178 27 COG2893 ManX, Phosphotransferase system, mannose/fructose-specific component IIA Carbohydrate transport and metabolism 62182457 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A SC3887 133 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 62178895 Pathogen eac EaC protein SC0325 1 None None None 62182545 Common glpK glycerol kinase SC3975 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 62181508 Common ppdA hypothetical protein SC2938 10 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 62181401 Common invF invasion protein SC2831 8 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62181091 Common yfgA hypothetical protein SC2521 45 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 62182072 Common yhhL hypothetical protein SC3502 16 COG3776 COG3776, Predicted membrane protein Function unknown 62181740 Common ygjR putative dehydrogenase SC3170 134 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 62182040 Pathogen - hypothetical protein SC3470 2 None None None 62182834 Pathogen - putative cytoplasmic protein SC4264 1 None None None 62178974 Common - putative transcription regulator, AraC family SC0404 78 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179850 Common yeaS leucine export protein LeuE SC1280 113 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 62179152 Common fimA major type 1 subunit fimbrin (pilin) SC0582 23 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179856 Common yaoF putative hemolysin SC1286 16 COG3042 Hlx, Putative hemolysin General function prediction only 62179840 Common oxd6D putative ATPase component of ABC-type transport system, contain duplicated ATPase domain SC1270 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 62182533 Common ydeW putative transcriptional repressor SC3963 69 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 62178764 Common fhuB iron-hydroxamate transporter permease subunit SC0194 190 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 62182431 Common yigL predicted hydrolase SC3861 119 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62181797 Common infB translation initiation factor IF-2 SC3227 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 62179630 Common elbA hypothetical protein SC1060 5 None None None 62182884 Common pyrI aspartate carbamoyltransferase regulatory subunit SC4314 64 COG1781 PyrI, Aspartate carbamoyltransferase, regulatory subunit Nucleotide transport and metabolism 62179588 Common rmf ribosome modulation factor (involved in dimerization of 70S ribosomes) SC1018 21 COG3130 Rmf, Ribosome modulation factor Translation, ribosomal structure and biogenesis 62180452 Common yobB putative amidohydrolase SC1882 11 COG0388 COG0388, Predicted amidohydrolase General function prediction only 62182249 Common fidL putative inner membrane protein SC3679 4 None None None 62181597 Common yqgB putative inner membrane protein SC3027 3 None None None 62182936 Common yjiE putative DNA-binding transcriptional regulator SC4366 155 COG0583 LysR, Transcriptional regulator Transcription 62182008 Common feoB ferrous iron transport protein B SC3438 178 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 62182473 Common hemN coproporphyrinogen III oxidase SC3903 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 62179737 Common ycfU outer membrane-specific lipoprotein transporter subunit LolC SC1167 153 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 62180147 Common narY nitrate reductase 2, beta subunit SC1577 150 COG1140 NarY, Nitrate reductase beta subunit Energy production and conversion 62182699 Common yjbQ putative cytoplasmic protein SC4129 77 COG0432 COG0432, Uncharacterized conserved protein Function unknown 62179816 Pathogen - hypothetical protein SC1246 1 None None None 62181399 Common invE invasion protein SC2829 8 None None None 62181302 Common stpA DNA binding protein, nucleoid-associated SC2732 31 COG2916 Hns, DNA-binding protein H-NS General function prediction only 62182468 Common glnL nitrogen regulation protein NR(II) SC3898 220 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 62179433 Common ybjK paral putative regulator (TetR/Acr family) SC0863 25 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 62182389 Common gppA guanosine pentaphosphate phosphohydrolase SC3819 180 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 62182461 Common polA DNA polymerase I SC3891 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 62179336 Common oadB putative oxalacetate decarboxylase, subunit beta SC0766 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 162139553 Common yqeF acetyl-CoA acetyltransferase SC2958 185 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 62181645 Common exuT putative permease SC3075 183 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180242 Common mppA periplasmic murein tripeptide transport protein, also negative regulator of mulitple antibiotic resistance SC1672 200 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 62182613 Common thiF thiamine biosynthesis protein ThiF SC4043 221 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 62182785 Common - entericidin B membrane lipoprotein SC4215 9 COG5510 COG5510, Predicted small secreted protein Function unknown 62180132 Common - putative outer membrane or secreted lipoprotein SC1562 8 None None None 62180924 Common hisQ ABC superfamily (membrane),histidine and lysine/arginine/ornithine transport system SC2354 171 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 62182144 Common tag 3-methyl-adenine DNA glycosylase I SC3574 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 62182790 Common frdC fumarate reductase subunit C SC4220 23 COG3029 FrdC, Fumarate reductase subunit C Energy production and conversion 62181144 Common recO DNA repair protein RecO SC2574 86 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 162139585 Common ydcW putative aldehyde dehydrogenase SC1594 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62179497 Common pflB pyruvate formate lyase I, induced anaerobically SC0927 58 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 62180170 Common yncJ putative periplasmic protein SC1600 4 None None None 62181614 Common yggW coproporphyrinogen III oxidase SC3044 206 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 62180749 Common yehX putative ABC-type proline/glycine betaine transport system, ATPase component SC2179 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 62181547 Pathogen - hypothetical protein SC2977 1 None None None 62182943 Common yfcI hypothetical protein SC4373 28 COG5464 COG5464, Uncharacterized conserved protein Function unknown 62181000 Common ptsI phosphoenolpyruvate-protein phosphotransferase SC2430 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 62181816 Common yrbA putative transcriptional regulator (BolA family) SC3246 73 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 62182633 Common aceA isocitrate lyase SC4063 128 COG2224 AceA, Isocitrate lyase Energy production and conversion 62179866 Common yeaH hypothetical protein SC1296 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 62182139 Common lpfD long polar fimbrial operon protein SC3569 7 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179041 Common phnR 2-aminoethylphosphonate transport, repressor SC0471 128 COG2188 PhnF, Transcriptional regulators Transcription 62180179 Common sgcB putative PTS system, enzymeIIB component SC1609 18 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 62179995 Pathogen sseF Secretion system effector SseF SC1425 1 None None None 62179581 Common pyrD dihydroorotate dehydrogenase 2 SC1011 231 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 62180829 Common ccmA ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein SC2259 125 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 62181687 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase SC3117 92 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 62182284 Common deoR putative regulatory protein, deoR family SC3714 77 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62182498 Common - putative inner membrane lipoprotein SC3928 5 None None None 62181373 Common prgK cell invasion protein; lipoprotein, may link inner and outer membranes SC2803 28 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 62180337 Common ychA putative transcriptional regulator SC1767 53 COG2912 COG2912, Uncharacterized conserved protein Function unknown 62180032 Common slyA transcriptional regulator SlyA SC1462 120 COG1846 MarR, Transcriptional regulators Transcription 62180675 Common cpsG phosphomannomutase in colanic acid gene cluster SC2105 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 62182671 Common yjbE putative outer membrane protein SC4101 5 None None None 62180496 Common cheM methyl accepting chemotaxis protein II, aspartate sensor-receptor SC1926 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62182540 Common tpiA triosephosphate isomerase SC3970 231 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 62178935 Pathogen - hypothetical protein SC0365 1 None None None 62178929 Common - DNA stabilization protein SC0359 4 None None None 62179422 Common etfD putative dehydrogenase (flavoproteins) SC0852 109 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 62180310 Common oppC ABC superfamily (membrane), oligopeptide transport protein SC1740 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62182421 Common corA magnesium/nickel/cobalt transporter CorA SC3851 146 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 62179758 Common ymfC putative ribosomal large subunit pseudouridine synthase SC1188 200 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 162139582 Common fnr fumarate/nitrate reduction transcriptional regulator SC1656 159 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 62182515 Common yiiZ putative dicarboxylate-binding periplasmic protein SC3945 100 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 62180376 Common ycgL putative cytoplasmic protein SC1806 35 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 62180809 Common rsuA 16S rRNA pseudouridylate synthase A SC2239 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 62181982 Common yhfL putative outer membrane lipoprotein SC3412 6 None None None 62182237 Common spoU tRNA guanosine-2'-O-methyltransferase SC3667 202 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 62182731 Common nrfG formate-dependent nitrite reductase complex subunit NrfG SC4161 30 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 62180555 Common fliQ flagellar biosynthesis protein FliQ SC1985 86 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 62181632 Common ars putative arylsulfatase SC3062 85 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 62179981 Common - putative regulatory proteins, merR family SC1411 43 COG0789 SoxR, Predicted transcriptional regulators Transcription 62180953 Common yfcM putative cytoplasmic protein SC2383 31 COG3101 COG3101, Uncharacterized protein conserved in bacteria Function unknown 62179775 Common ydfU putative cytoplasmic protein SC1205 6 None None None 62179870 Common yeaE putative aldehyde reductase SC1300 191 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 62181276 Common iroD Similar to enterochelin esterase of E coli (Fes) SC2706 24 COG2382 Fes, Enterochelin esterase and related enzymes Inorganic ion transport and metabolism 62178656 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase SC0086 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 62181069 Common ppx exopolyphosphatase SC2499 178 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 62182675 Common yjbA phosphate-starvation-inducible protein PsiE SC4105 20 COG3223 COG3223, Predicted membrane protein Function unknown 62178701 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase SC0131 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 62180323 Common ybeQ putative TPR repeat protein SC1753 109 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 62178824 Common yafD hypothetical protein SC0254 31 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 62182443 Common tatC TatABCE protein translocation system subunit SC3873 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 62178576 Common yaaJ putative AGCS family, alanine/glycine transport protein SC0006 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 62179184 Common ybdK putative cytoplasmic protein SC0614 60 COG2170 COG2170, Uncharacterized conserved protein Function unknown 62179149 Common ybcI putative membrane-bound metal-dependent hydrolase SC0579 19 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 62181565 Common gcvH glycine cleavage system protein H SC2995 187 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 62182518 Common - putative inner membrane protein SC3948 8 None None None 62180288 Common trpH trpR controlled transcriptional unit in the 5' upstream region of the trp operon SC1718 121 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 62178988 Common yaiW putative outer membrane lipoprotein SC0418 18 None None None 62179882 Common ydjG Hypothetical oxidoreductase ydjG SC1312 205 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 62179116 Common ybbO short chain dehydrogenase SC0546 233 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 62182764 Pathogen - hypothetical protein SC4194 1 None None None 62179784 Common terS Gifsy-1 prophage DNA packaging protein SC1214 9 COG4220 COG4220, Phage DNA packaging protein, Nu1 subunit of terminase DNA replication, recombination, and repair 62183006 Common sthE putative major fimbrial subunit SC4436 13 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62178745 Common stiC putativie fimbrial usher SC0175 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62182481 Common yihR putative aldose-1-epimerase SC3911 34 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 62180395 Common manY Sugar Specific PTS family, mannose-specific enzyme IIC SC1825 37 COG3715 ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Carbohydrate transport and metabolism 62179544 Common - Gifsy-1 prophage cI SC0974 3 None None None 62181200 Common - putative DNA-binding protein SC2630 3 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62182658 Common - putative inner membrane protein SC4088 8 COG5004 COG5004, P2-like prophage tail protein X General function prediction only 62179454 Common ybjP predicted lipoprotein SC0884 9 None None None 62179727 Common ycfM putative outer membrane lipoprotein SC1157 21 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 62180069 Pathogen - hypothetical protein SC1499 2 None None None 62180387 Common yoaH hypothetical protein SC1817 16 COG3140 COG3140, Uncharacterized protein conserved in bacteria Function unknown 62181792 Common nlpI lipoprotein NlpI SC3222 65 COG4785 NlpI, Lipoprotein NlpI, contains TPR repeats General function prediction only 62179495 Pathogen - hypothetical protein SC0925 1 None None None 62181207 Pathogen - Gifsy-1 prophage protein SC2637 2 None None None 62180353 Common cybH hydrogenase 1 b-type cytochrome subunit SC1783 44 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 62178930 Common - Packaged DNA stabilization protein gp26 SC0360 3 None None None 62180828 Common ccmB ABC superfamily (membrane) heme exporter protein, cytochrome c-type biogenesis protein SC2258 75 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 62180939 Common dedA hypothetical protein SC2369 172 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 62180434 Pathogen - putative inner membrane protein SC1864 2 None None None 62181968 Common prkB putative phosphoribulokinase SC3398 52 COG3954 PrkB, Phosphoribulokinase Energy production and conversion 62179374 Common MoaE molybdopterin synthase large subunit SC0804 158 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 62179069 Common cof putative hydrolase SC0499 110 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62179105 Common fsr putative MFS family of transport protein SC0535 99 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 62179201 Common cstA carbon starvation protein SC0631 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 62179393 Common glnQ glutamine ABC transporter ATP-binding protein SC0823 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 62181835 Common yhbL isoprenoid biosynthesis protein with amidotransferase-like domain SC3265 41 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 62182327 Common rpmH 50S ribosomal protein L34 SC3757 109 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 62182563 Common - putative inner membrane protein SC3993 183 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62180995 Common ligA NAD-dependent DNA ligase LigA SC2425 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 62180213 Common hslJ heat-inducible protein SC1643 14 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 62178725 Common - putative periplasmic protein SC0155 18 None None None 62182134 Pathogen - hypothetical protein SC3564 1 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 62180319 Common ychK hypothetical protein SC1749 130 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 62180891 Common nuoI NADH dehydrogenase subunit I SC2321 191 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 62179062 Common lon DNA-binding ATP-dependent protease La SC0492 217 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 62182115 Common yhjH EAL domain containing protein involved in flagellar function SC3545 115 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62182337 Common phoU transcriptional regulator PhoU SC3767 195 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 62178966 Common hmb putative Copper chaperone SC0396 19 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 62179094 Common apt adenine phosphoribosyltransferase SC0524 191 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 62180409 Common yebQ putative transport protein SC1839 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62181865 Common - putative regulatory protein, gntR family SC3295 133 COG1802 GntR, Transcriptional regulators Transcription 62182188 Common lldD L-lactate dehydrogenase SC3618 128 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 62179087 Common acrB RND family, acridine efflux pump SC0517 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 62181016 Common yfeY hypothetical protein SC2446 10 None None None 62181733 Common aer aerotaxis sensor receptor, senses cellular redox state or proton motive force SC3163 160 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62180719 Pathogen - hypothetical protein SC2149 1 None None None 62179080 Common ylaB putative diguanylate cyclase/phosphodiesterase domain 2 SC0510 162 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 62178688 Common ftsL cell division protein FtsL SC0118 25 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 62182922 Common - hypothetical protein SC4352 2 None None None 62179963 Common sufS selenocysteine lyase SC1393 239 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 62180488 Common - putative cytoplasmic protein SC1918 21 COG4225 COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins General function prediction only 62181719 Common ygiF putative cytoplasmic protein SC3149 59 COG3025 COG3025, Uncharacterized conserved protein Function unknown 62179802 Common vtaK Gifsy-1 prophage VtaK SC1232 14 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 62179570 Common vtaI Gifsy-2 prophage probable tail assembly protein SC1000 13 COG4723 COG4723, Phage-related protein, tail component Function unknown 62180710 Pathogen - hypothetical protein SC2140 1 None None None 62180185 Common aac6 cryptic aminoglycoside resistance gene SC1615 19 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 62180244 Common ycjG putative chloromuconate cycloisomerase (muconate cycloisomerase) SC1674 107 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62180263 Pathogen ycjE putative cytoplasmic protein SC1693 1 None None None 62181024 Common eutL putative carboxysome structural protein, ethanolamine utilization SC2454 20 COG4816 EutL, Ethanolamine utilization protein Amino acid transport and metabolism 62178904 Pathogen kil kil protein, inhibitor of host septation in Enterobacteria phage P22 SC0334 1 None None None 62180852 Common yfaE 2Fe-2S ferredoxin YfaE SC2282 52 COG0633 Fdx, Ferredoxin Energy production and conversion 62178870 Common tcfA putative fimbrial protein SC0300 8 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62181948 Common bfd bacterioferritin-associated ferredoxin SC3378 25 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 62181924 Common secY preprotein translocase subunit SecY SC3354 225 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 62180911 Common tktC putative transketolase SC2341 222 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 62182102 Common aspG putative L-asparaginase SC3532 126 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 62183015 Common lasT putative tRNA/tRNA methyltransferase SC4445 150 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 62181328 Pathogen - hypothetical protein SC2758 4 None None None 62181076 Common - hypothetical protein SC2506 17 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 62179579 Common msgA Gifsy-2 prophage MsgA SC1009 5 None None None 62180789 Common nfo endonuclease IV SC2219 99 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 62178696 Common murC UDP-N-acetylmuramate--L-alanine ligase SC0126 209 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 162139616 Common tsf elongation factor Ts SC0217 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 62178601 Common yfeN hypothetical protein SC0031 8 None None None 62180039 Common gst glutathionine S-transferase SC1469 85 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62182871 Common mlr putative selenocysteine synthase [L-seryl-tRNA(Ser) selenium transferase SC4301 72 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 62180281 Common topA DNA topoisomerase I SC1711 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 62179973 Common rbsk putative regulatory protein, deoR family SC1403 114 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62180595 Common cobS cobalamin synthase SC2025 127 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 62181170 Common - putative bacteriophage protein SC2600 7 None None None 62180096 Common ydfZ putative cytoplasmic protein SC1526 7 None None None 62182406 Common hemY putative protoheme IX biogenesis protein SC3836 51 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 62179143 Common purE phosphoribosylaminoimidazole carboxylase catalytic subunit SC0573 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 62180378 Common minD cell division inhibitor MinD SC1808 145 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 62182589 Common btuB vitamin B12/cobalamin outer membrane transporter SC4019 129 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 62179258 Pathogen - putative cytoplasmic protein SC0688 2 None None None 62180872 Common arnT 4-amino-4-deoxy-L-arabinose transferase SC2302 67 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 62181213 Common rseB periplasmic negative regulator of sigmaE SC2643 48 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 62182859 Common fbp fructose-1,6-bisphosphatase SC4289 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 62181910 Common smg hypothetical protein SC3340 40 COG2922 Smg, Uncharacterized protein conserved in bacteria Function unknown 62179809 Common tfaU hypothetical protein SC1239 8 None None None 62180358 Common gdh putative Homolog of glutamic dehyrogenase SC1788 180 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 62181446 Common sopD secreted protein in the Sop family; transferred to eukaryotic cells SC2876 3 None None None 62179050 Common ybeQ hypothetical protein SC0480 88 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 62179023 Common yajD hypothetical protein SC0453 26 None None None 62179386 Common ybiH putative DNA-binding transcriptional regulator SC0816 32 COG1309 AcrR, Transcriptional regulator Transcription 162139620 Common yadF carbonic anhydrase SC0171 116 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 62181461 Common stfD putative periplasmic fimbrial chaperone SC2891 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62179383 Common ybhS putative ABC superfamily (membrane) transport protein SC0813 130 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 62179879 Common ydiJ Hypothetical zinc-type alcohol dehydrogenase-like SC1309 212 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62182295 Common yidF putative cytoplasmic protein SC3725 20 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 62180585 Pathogen - hypothetical protein SC2015 1 None None None 62182877 Common nrdD anaerobic ribonucleoside triphosphate reductase SC4307 98 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 62181151 Common tfa Fels-2 prophage Tfa SC2581 7 None None None 62178884 Common dinP DNA polymerase IV SC0314 183 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 62181499 Common amiC N-acetylmuramoyl-L-alanine amidase SC2929 177 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 62181642 Pathogen - hypothetical protein SC3072 1 None None None 62182507 Common rhaB rhamnulokinase SC3937 60 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 62180445 Pathogen - hypothetical protein SC1875 1 None None None 62181485 Common fucP L-fucose transporter SC2915 51 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 62178963 Common oprM outer membrane efflux protein-like protein SC0393 125 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62182400 Common wecE TDP-4-oxo-6-deoxy-D-glucose transaminase SC3830 196 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 62178844 Common - putative cytoplasmic protein SC0274 47 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 62179972 Common - putative cytoplasmic protein SC1402 10 COG5426 COG5426, Uncharacterized membrane protein Function unknown 62180741 Common yehR putative lipoprotein SC2171 8 COG4808 COG4808, Uncharacterized protein conserved in bacteria Function unknown 62181669 Common yghA oxidoreductase SC3099 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62179711 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III SC1141 230 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 62181472 Pathogen - hypothetical protein SC2902 1 None None None 62182176 Common selB selenocysteinyl-tRNA-specific translation factor SC3606 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 62179552 Common - Gifsy-1 prophage protein SC0982 4 None None None 62181748 Common yqjK putative inner membrane protein SC3178 9 None None None 62178877 Common sapA sapA-like protein SC0307 34 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 62179137 Common allD ureidoglycolate dehydrogenase SC0567 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 62180818 Pathogen - hypothetical protein SC2248 1 None None None 62180748 Common yehW putative ABC-type proline/glycine betaine transport systems, permease component SC2178 131 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 62180198 Pathogen - putative periplasmic binding protein SC1628 1 None None None 62179610 Common pipB Pathogenicity island encoded protein: SPI3 SC1040 65 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 62178640 Common fixA putative electron transfer flavoprotein FixA SC0070 151 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 62179108 Common ybaP putative cytoplasmic protein SC0538 37 COG3735 COG3735, Uncharacterized protein conserved in bacteria Function unknown 62180090 Common ynfB putative periplasmic protein SC1520 11 None None None 62181198 Pathogen ead Ead protein SC2628 1 None None None 62182128 Common dppD dipeptide transporter ATP-binding subunit SC3558 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 62181490 Common ygdE putative SAM-dependent methyltransferase SC2920 46 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 62180794 Common tnpR transposase of Tn10 SC2224 19 None None None 62182815 Common yjfH 23S rRNA (guanosine-2'-O-)-methyltransferase SC4245 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 62182975 Common rsmC 16S ribosomal RNA m2G1207 methyltransferase SC4405 158 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 62179692 Common flgC flagellar basal body rod protein FlgC SC1122 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 62181991 Common yrfA hypothetical protein SC3421 6 None None None 62182198 Common yibP hypothetical protein SC3628 193 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 62179536 Pathogen - exodeoxyribonuclease VIII SC0966 3 None None None 62181757 Common tdcE pyruvate formate-lyase 4/ 2-ketobutyrate formate-lyase SC3187 59 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 62182810 Common hflC FtsH protease regulator HflC SC4240 149 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 62181529 Common - putative transcriptional regulator, LysR family SC2959 20 COG0583 LysR, Transcriptional regulator Transcription 62182573 Common frwC PTS system fructose-like IIC component SC4003 67 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 62181428 Common pcm protein-L-isoaspartate O-methyltransferase SC2858 157 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 62179263 Common gltI glutamate and aspartate transporter subunit SC0693 156 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62181771 Common ptkC PTS family galactitol-specific enzyme IIC SC3201 19 COG3775 GatC, Phosphotransferase system, galactitol-specific IIC component Carbohydrate transport and metabolism 62178802 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha SC0232 196 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 62179592 Common ompA outer membrane protein A SC1022 147 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 62182824 Common yjfP predicted hydrolase SC4254 20 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 62182509 Common rhaR positive regulator for rhaRS operon (AraC/XylS familiy) SC3939 109 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179532 Common pncB nicotinate phosphoribosyltransferase SC0962 93 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 62180293 Common trpA tryptophan synthase subunit alpha SC1723 212 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 62179599 Common yccT hypothetical protein SC1029 19 COG3110 COG3110, Uncharacterized protein conserved in bacteria Function unknown 62181752 Common yhaK putative cytoplasmic protein SC3182 98 COG1741 COG1741, Pirin-related protein General function prediction only 62180084 Common dmsB anaerobic dimethyl sulfoxide reductase, subunit B SC1514 161 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62180295 Common yciF putative cytoplasmic protein SC1725 38 COG3685 COG3685, Uncharacterized protein conserved in bacteria Function unknown 62182527 Common - aminoimidazole riboside kinase SC3957 206 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62182301 Common ibpB heat shock chaperone IbpB SC3731 69 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 62181225 Common yfiP putative cytoplasmic protein SC2655 39 COG3148 COG3148, Uncharacterized conserved protein Function unknown 62182317 Common dgoK 2-oxo-3-deoxygalactonate kinase SC3747 41 COG3734 DgoK, 2-keto-3-deoxy-galactonokinase Carbohydrate transport and metabolism 62182792 Common frdA fumarate reductase flavoprotein subunit SC4222 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 62180703 Common baeR DNA-binding response regulator in two-component regulatory system with BaeS SC2133 212 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62180722 Pathogen cesT putative cytoplasmic protein SC2152 2 None None None 62182399 Common wecD TDP-fucosamine acetyltransferase SC3829 14 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 62181004 Common ptsJ putative regulatory protein, gntR family SC2434 167 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 62181100 Common sseB enhances serine sensitivity SC2530 14 None None None 62180979 Common yghZ putative oxidoreductase SC2409 195 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 62182776 Common fxsA FxsA SC4206 36 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 62182619 Common nfi endonuclease V SC4049 73 COG1515 Nfi, Deoxyinosine 3'endonuclease (endonuclease V) DNA replication, recombination, and repair 62182724 Common acs acetyl-CoA synthetase SC4154 216 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 62182276 Common farR putative regulatory protein, gntR family SC3706 139 COG2188 PhnF, Transcriptional regulators Transcription 62180833 Common napG quinol dehydrogenase periplasmic component SC2263 59 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62182054 Common ugpE glycerol-3-phosphate transporter membrane protein SC3484 144 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 162139506 Common yjeQ ribosome-associated GTPase SC4228 163 COG1162 COG1162, Predicted GTPases General function prediction only 62182562 Common metL bifunctional aspartate kinase II/homoserine dehydrogenase II SC3992 236 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 62182410 Common cyaA adenylate cyclase SC3840 25 COG3072 CyaA, Adenylate cyclase Nucleotide transport and metabolism 62180429 Common tnp putative transposase SC1859 33 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181866 Common - putative regulatory protein, gntR family SC3296 103 COG1802 GntR, Transcriptional regulators Transcription 62182546 Common glpF MIP channel, glycerol diffusion SC3976 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 62180489 Common flhE flagellar protein SC1919 9 None None None 62180724 Pathogen - hypothetical protein SC2154 1 None None None 162139516 Common glpX fructose 1,6-bisphosphatase II SC3974 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 62181920 Common rpoA DNA-directed RNA polymerase subunit alpha SC3350 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 162139566 Common accD acetyl-CoA carboxylase subunit beta SC2368 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 62181563 Common - putative outer membrane protein SC2993 2 None None None 62178716 Common ampE regulatory protein AmpE SC0146 17 COG3725 AmpE, Membrane protein required for beta-lactamase induction Defense mechanisms 62178778 Common dgt deoxyguanosinetriphosphate triphosphohydrolase SC0208 160 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 62178841 Pathogen - putative cytoplasmic protein SC0271 1 None None None 62181995 Common mrcA peptidoglycan synthetase SC3425 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 62182340 Common pstC phosphate transporter permease subunit SC3770 225 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 62181616 Common ansB L-asparaginase II SC3046 139 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 62181818 Common yrbC putative ABC superfamily (atp&memb), transport protein SC3248 78 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 62182427 Common recQ ATP-dependent DNA helicase RecQ SC3857 234 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 62182799 Common orn oligoribonuclease SC4229 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 62180053 Common ydgA putative periplasmic protein SC1483 23 COG5339 COG5339, Uncharacterized protein conserved in bacteria Function unknown 62181978 Common nirB nitrite reductase, large subunit SC3408 205 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 62180614 Common pocR Propanediol utilization: transcriptional regulation, AraC family SC2044 135 COG4936 PocR, Predicted sensor domain Signal transduction mechanisms / Transcription 62181139 Common yhjX putative permease SC2569 100 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 62178979 Common prpB 2-methylisocitrate lyase SC0409 135 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 62179162 Common rfbI putative glycosyl translocase SC0592 8 COG2246 COG2246, Predicted membrane protein Function unknown 62178918 Pathogen - hypothetical protein SC0348 1 None None None 62182558 Common - putative outer membrane lipoprotein SC3988 18 None None None 62178585 Pathogen - putative bacteriophage protein SC0015 2 None None None 62181706 Common astJ probable arylsulfate sulfotransferase SC3136 10 None None None 62182500 Common - putative inner membrane protein SC3930 11 None None None 62180460 Common edd phosphogluconate dehydratase SC1890 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 62182420 Common uvrD DNA-dependent helicase II SC3850 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 62182850 Common ytfJ putative transcriptional regulator SC4280 18 COG3054 COG3054, Predicted transcriptional regulator General function prediction only 62181660 Common hybA hydrogenase 2 protein HybA SC3090 163 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62180863 Common yfaV putative MFS family transport protein SC2293 130 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62180302 Common yciA predicted hydrolase SC1732 134 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 62182383 Common ilvY DNA-binding transcriptional regulator IlvY SC3813 190 COG0583 LysR, Transcriptional regulator Transcription 62180410 Common htpX heat shock protein HtpX SC1840 188 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 62180846 Common dgoA putative dehydratase protein SC2276 113 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62179438 Common rimK ribosomal protein S6 modification protein SC0868 157 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 62178932 Common - DNA transfer protein gp7 precursor SC0362 4 None None None 162139609 Common yajG hypothetical protein SC0487 19 COG3056 COG3056, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 62179969 Common pykF pyruvate kinase SC1399 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 62181436 Common cysN sulfate adenylyltransferase subunit 1 SC2866 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 62181695 Common parE DNA topoisomerase IV subunit B SC3125 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 62182195 Common grxC glutaredoxin 3 SC3625 132 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 62179222 Common citD citrate lyase subunit gamma SC0652 25 COG3052 CitD, Citrate lyase, gamma subunit Energy production and conversion 62179417 Common yliG putative Fe-S oxidoreductase family 1 SC0847 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 62181317 Common emrR transcriptional repressor MprA SC2747 84 COG1846 MarR, Transcriptional regulators Transcription 62182502 Common - hypothetical protein SC3932 79 COG1396 HipB, Predicted transcriptional regulators Transcription 62182801 Common yjeS putative Fe-S protein SC4231 136 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 62181361 Common hypE putative hydrogenase expression/formation protein SC2791 130 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 62178754 Common pcnB poly(A) polymerase I SC0184 211 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 62182111 Common TnpR transposase of Tn10 SC3541 19 None None None 62179719 Common yceG hypothetical protein SC1149 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 62179765 Pathogen - hypothetical protein SC1195 1 None None None 62180493 Common cheY chemotaxis regulator transmitting signal to flagellar motor component SC1923 219 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 62179871 Common yeaD putative enzyme related to aldose 1-epimerase SC1301 63 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 62178711 Common hofC type IV pilin biogenesis protein SC0141 143 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 62182643 Common yjbD hypothetical protein SC4073 9 None None None 62179049 Common - putative periplasmic protein SC0479 82 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 62181174 Pathogen - putative bacteriophage protein SC2604 2 None None None 62180156 Common yncB putative NADP-dependent oxidoreductase SC1586 94 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 62180322 Pathogen - hypothetical protein SC1752 2 None None None 62180925 Common hisJ ABC superfamily (bind_prot), histidine transport protein SC2355 177 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 62182693 Common pspG phage shock protein G SC4123 6 None None None 62181626 Common yqgA putative inner membrane protein SC3056 47 COG1811 COG1811, Uncharacterized membrane protein, possible Na+ channel or pump General function prediction only 62180274 Common yciS putative inner membrane protein SC1704 21 COG3771 COG3771, Predicted membrane protein Function unknown 62180329 Common narK MFS superfamily, nitrite extrusion protein SC1759 79 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 62181418 Common ygbJ 3-hydroxyisobutyrate dehydrogenase SC2848 153 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 62178799 Common lpxB lipid-A-disaccharide synthase SC0229 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 62182983 Common yjjW pyruvate formate lyase activating enzyme SC4413 67 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 62179016 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase SC0446 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 62181582 Common epd D-erythrose 4-phosphate dehydrogenase SC3012 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 162139600 Common hutI imidazolonepropionase SC0785 102 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 62181280 Common pipB Homolog of pipB, putative pentapeptide repeats (8 copies) SC2710 95 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 62181088 Common yfgM putative inner membrane protein SC2518 60 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 62179478 Pathogen - putative inner membrane protein SC0908 1 None None None 62182763 Common insF Transposase insF for insertion sequence IS3A/B/C/D SC4193 6 None None None 62180089 Common speG spermidine N1-acetyltransferase SC1519 102 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 62181573 Common serA D-3-phosphoglycerate dehydrogenase SC3003 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 62181872 Common yhcP p-hydroxybenzoic acid efflux subunit AaeB SC3302 44 COG1289 COG1289, Predicted membrane protein Function unknown 62179661 Common csgB curlin minor subunit SC1091 18 None None None 62180647 Common sbcB exonuclease I SC2077 51 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 62180364 Common ycgO potassium/proton antiporter SC1794 139 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 62179906 Common celD DNA-binding transcriptional dual regulator SC1336 84 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179682 Common yceB predicted lipoprotein SC1112 20 None None None 62179403 Common ybiR putative Di- and tricarboxylate transporters SC0833 75 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 162139534 Common nudE ADP-ribose diphosphatase NudE SC3426 112 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 62180450 Common yobA hypothetical protein SC1880 49 COG2372 CopC, Uncharacterized protein, homolog of Cu resistance protein CopC General function prediction only 62180115 Pathogen - putative outer membrane protein SC1545 3 COG4319 COG4319, Ketosteroid isomerase homolog Function unknown 62178831 Common - putative cytoplasmic protein SC0261 15 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 62181605 Common gshB glutathione synthetase SC3035 128 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 62181390 Common spaR surface presentation of antigens; secretory proteins SC2820 46 COG4791 EscT, Type III secretory pathway, component EscT Intracellular trafficking and secretion 62181406 Common pphB serine/threonine-specific protein phosphatase 2 SC2836 71 None None None 62179444 Common ybjO putative inner membrane protein SC0874 9 None None None 62180095 Common ydfI putative mannitol dehydrogenase SC1525 90 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 162139515 Common cytR DNA-binding transcriptional regulator CytR SC3983 126 COG1609 PurR, Transcriptional regulators Transcription 62181937 Common rplP 50S ribosomal protein L16 SC3367 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 62178991 Common ddl D-alanyl-alanine synthetase A SC0421 215 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 62180665 Common - hypothetical protein SC2095 64 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62180608 Common cbiT cobalt-precorrin-6Y C(15)-methyltransferase SC2038 111 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 62182650 Common vph putative phage tail fiber protein H SC4080 23 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 62181269 Common - reverse transcriptase-like protein SC2699 33 None None None 62181107 Common nifS cysteine desulfurase SC2537 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 62181839 Common gltD glutamate synthase subunit beta SC3269 214 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 62179914 Common yniB putative regulator SC1344 13 None None None 62181961 Common kefB glutathione-regulated potassium-efflux system protein KefB SC3391 199 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 62182569 Common yijF putative periplasmic protein SC3999 17 COG3738 COG3738, Uncharacterized protein conserved in bacteria Function unknown 62181374 Common prgJ cell invasion protein; cytoplasmic SC2804 6 None None None 62178670 Common thiQ thiamin transporter ATP-binding subunit SC0100 249 COG3840 ThiQ, ABC-type thiamine transport system, ATPase component Coenzyme metabolism 62179467 Common ybjZ macrolide transporter ATP-binding /permease protein SC0897 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 62180568 Common ompS putative porin SC1998 30 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62181301 Common - hypothetical protein SC2731 2 None None None 62181090 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase SC2520 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 62179058 Common bolA transcriptional regulator BolA SC0488 96 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 62180188 Common mdoD glucan biosynthesis protein D SC1618 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 62179822 Common msgA Macrophage survival gene; reduced mouse virulence SC1252 8 None None None 62181798 Common nusA transcription elongation factor NusA SC3228 216 COG0195 NusA, Transcription elongation factor Transcription 62180692 Common asmA putative assembly protein SC2122 42 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 62181881 Common mreC cell wall structural complex MreBCD transmembrane component MreC SC3311 133 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 62182374 Common yifA transcriptional regulator HdfR SC3804 181 COG0583 LysR, Transcriptional regulator Transcription 62182623 Common zraP zinc resistance protein SC4053 6 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 62180561 Common yedQ putative inner membrane protein SC1991 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 62179744 Pathogen sifA secreted effector protein SC1174 1 None None None 62180801 Common rtn hypothetical protein SC2231 163 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62181334 Common mltB murein hydrolase B SC2764 107 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 62179848 Pathogen - putative cytoplasmic protein SC1278 3 None None None 62180016 Common cfa cyclopropane fatty acyl phospholipid synthase SC1446 143 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 62181260 Common amyH large repetitive protein SC2690 147 None None None 62182211 Common rfaI UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase SC3641 32 COG1442 RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases Cell envelope biogenesis, outer membrane 62182951 Common - hypothetical protein SC4381 100 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179628 Common hpaA 4-hydroxyphenylacetate catabolism SC1058 89 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179213 Common dmsB putative hydrogenase protein SC0643 166 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62180369 Common nhaB sodium/proton antiporter SC1799 34 COG3067 NhaB, Na+/H+ antiporter Inorganic ion transport and metabolism 62180630 Common pduQ Propanediol utilization: propanol dehydrogenase SC2060 175 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 62180777 Common galS DNA-binding transcriptional repressor SC2207 128 COG1609 PurR, Transcriptional regulators Transcription 62182872 Common - hypothetical protein SC4302 15 None None None 62182345 Common glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase SC3775 235 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 62181122 Common cadC DNA-binding transcriptional activator SC2552 60 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62179132 Common allB allantoinase SC0562 212 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 62179521 Common mukE condesin subunit E SC0951 20 COG3095 MukE, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 162139575 Common znuC high-affinity zinc transporter ATPase SC1900 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 62179345 Common - putative inner membrane protein SC0775 11 COG4714 COG4714, Uncharacterized membrane-anchored protein conserved in bacteria Function unknown 62181095 Common ynfH putative dimethylsulfoxide reductase SC2525 30 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 62178628 Common dapB dihydrodipicolinate reductase SC0058 217 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 62180474 Common - putative cytoplasmic protein SC1904 3 None None None 62180538 Common yedD hypothetical protein SC1968 7 None None None 62178827 Common gloB predicted hydroxyacylglutathione hydrolase SC0257 197 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 62182243 Common yicI alpha-xylosidase YicI SC3673 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 62179455 Common - hypothetical protein SC0885 96 COG0393 COG0393, Uncharacterized conserved protein Function unknown 62179671 Common yceE drug efflux system protein MdtG SC1101 60 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182156 Common - putative cytoplasmic protein SC3586 28 COG4453 COG4453, Uncharacterized protein conserved in bacteria Function unknown 62179364 Common bioC predicted methyltransferase SC0794 160 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62181827 Common yhbG putative ABC transporter ATP-binding protein YhbG SC3257 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 62182751 Common dcuR DNA-binding response regulator in two-component regulatory system with DcuS SC4181 156 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 62179503 Common ycaL putative Zn-dependent protease with chaperone function SC0933 130 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 62182001 Common yhgE putative inner membrane protein SC3431 20 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62181366 Common sitC iron transporter: fur regulated SC2796 191 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 62182037 Common glgX glycogen debranching enzyme SC3467 151 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 62179032 Common yajO putative oxidoreductase / K + channel protein SC0462 205 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 62182407 Common hemX putative uroporphyrinogen III C-methyltransferase SC3837 51 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 62182282 Common fucP putative L-fucose permease SC3712 45 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 62179378 Common ybhN putative negative regulator SC0808 56 COG0392 COG0392, Predicted integral membrane protein Function unknown 62181933 Common rplX 50S ribosomal protein L24 SC3363 211 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 62178736 Common speE spermidine synthase SC0166 128 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 62179517 Common ycbJ hypothetical protein SC0947 10 None None None 62180041 Common nth endonuclease III SC1471 238 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 62179248 Common leuS leucyl-tRNA synthetase SC0678 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62182149 Common yiaF putative outer membrane lipoprotein SC3579 12 None None None 62179269 Common ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase SC0699 131 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 62178770 Common stfG putative minor fimbrial subunit; putative adhesin SC0200 7 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62180686 Common wcaA predicted glycosyl transferase SC2116 150 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62179044 Common thiJ hypothetical protein SC0474 59 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 62178945 Common ledS putative 3-isopropylmalate isomerase (dehydratase), subunit with LeuC SC0375 203 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 62180549 Common fliK flagellar hook-length control protein SC1979 31 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 62182608 Common rpoC DNA-directed RNA polymerase subunit beta' SC4038 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 62179241 Common ybeA hypothetical protein SC0671 164 COG1576 COG1576, Uncharacterized conserved protein Function unknown 62178783 Common dapD 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase SC0213 140 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 62182020 Common rtcB putative cytoplasmic protein SC3450 121 COG1690 RtcB, Uncharacterized conserved protein Function unknown 62179255 Common ybeS putative molecular chaperone, DnaJ family SC0685 9 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 62180866 Common cinA competence damage-inducible protein A SC2296 138 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 62178657 Common surA peptidyl-prolyl cis-trans isomerase SurA SC0087 161 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 62180970 Common pgtP Phosphoglycerate transport: transporter SC2400 98 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62182781 Common yjeJ putative inner membrane protein SC4211 5 None None None 62181560 Common yqfA putative hemolysin SC2990 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 62179837 Common oxd6A putative ABC transporter periplasmic binding protein SC1267 196 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 62182034 Common glgP glycogen phosphorylase SC3464 148 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 62182472 Common - putative inner membrane protein SC3902 6 None None None 62179571 Pathogen - hypothetical protein SC1001 1 None None None 62179471 Pathogen - hypothetical protein SC0901 2 None None None 62180397 Common yobD hypothetical protein SC1827 16 COG4811 COG4811, Predicted membrane protein Function unknown 62181235 Common rluD 23S rRNA pseudouridine synthase D SC2665 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 62181941 Common rplB 50S ribosomal protein L2 SC3371 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 62182233 Pathogen - hypothetical protein SC3663 1 None None None 62181911 Common smf hypothetical protein SC3341 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 62182701 Pathogen - putative inner membrane protein SC4131 2 None None None 62179862 Pathogen - hypothetical protein SC1292 1 None None None 62180233 Pathogen - putative outer membrane or exported SC1663 1 None None None 62178679 Common leuA 2-isopropylmalate synthase SC0109 217 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 62182708 Common - putative ABC exporter outer membrane component homolog SC4138 112 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62182921 Common mta hypothetical protein SC4351 24 COG1041 COG1041, Predicted DNA modification methylase DNA replication, recombination, and repair 62179794 Pathogen vmtZ Gifsy-1 prophagei VmtZ SC1224 4 None None None 62179277 Common glnS glutaminyl-tRNA synthetase SC0707 241 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 62180885 Common yfbK putative von Willebrand factor, vWF type A domain SC2315 57 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 62179371 Common moaB molybdopterin biosynthesis, protein B SC0801 189 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 62182258 Common - putative cytoplasmic protein SC3688 15 None None None 62178893 Common proA gamma-glutamyl phosphate reductase SC0323 193 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 62178690 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase SC0120 207 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 62182568 Common katG catalase; hydroperoxidase HPI(I) SC3998 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 62178902 Common ssb ssDNA-binding protein controls activity of RecBCD nuclease SC0332 212 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 62180918 Common yfcE phosphodiesterase SC2348 40 COG0622 COG0622, Predicted phosphoesterase General function prediction only 62179103 Common gsk inosine-guanosine kinase SC0533 57 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62181014 Common ucpA short chain dehydrogenase SC2444 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62179085 Common hha hemolysin expression-modulating protein SC0515 12 None None None 62182583 Common argH argininosuccinate lyase SC4013 232 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 62182062 Common livH branched-chain amino acid transporter permease subunit LivH SC3492 152 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 62178920 Common enpP Rz lysis protein SC0350 9 None None None 62179651 Common yiiy putative outer membrane protein SC1081 12 None None None 62180246 Common tyrR DNA-binding transcriptional dual regulator, tyrosine-binding SC1676 173 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 62180154 Common yncE putative periplasmic protein SC1584 48 COG3391 COG3391, Uncharacterized conserved protein Function unknown 62178595 Common bcfG fimbrial chaparone SC0025 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62180505 Common otsA trehalose-6-phosphate synthase SC1935 97 COG0380 OtsA, Trehalose-6-phosphate synthase Carbohydrate transport and metabolism 62180993 Common yfeH putative Na+-dependent transporter SC2423 55 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 62182269 Pathogen - hypothetical protein SC3699 1 None None None 162139569 Common elaC ribonuclease Z SC2313 131 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 62181713 Common glgS glycogen synthesis protein GlgS SC3143 5 None None None 62182070 Common ftsY cell division protein FtsY SC3500 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 62180596 Common cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase SC2026 129 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 62179887 Common sppA protease 4 SC1317 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 62181220 Common yfiK neutral amino-acid efflux protein SC2650 95 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 62179293 Common kdpD sensor protein KdpD SC0723 222 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 62180998 Common cysK cysteine synthase A SC2428 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 62181837 Common yhcC putative FeS oxidoreductase SC3267 86 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 162139623 Common nadC quinolinate phosphoribosyltransferase SC0144 203 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 62182762 Pathogen - putative cytoplasmic protein SC4192 1 None None None 162139590 Pathogen asr acid shock protein precursor SC1503 1 None None None 62178924 Common - gp2-like protein SC0354 7 COG5565 COG5565, Bacteriophage terminase large (ATPase) subunit and inactivated derivatives General function prediction only 62181643 Common xcd putative xylanase/chitin deacetylase SC3073 115 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 62178962 Common yjeI putative outer membrane lipoprotein SC0392 19 None None None 62182140 Common lpfB long polar fimbrial chaperone SC3570 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 62180324 Pathogen - hypothetical protein SC1754 1 None None None 62180144 Common smvA Methyl viologen resistance SC1574 173 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180636 Common pduW propionate kinase SC2066 161 COG0282 ackA, Acetate kinase Energy production and conversion 62182165 Common xylB xylulokinase SC3595 184 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 62179890 Common topB DNA topoisomerase III SC1320 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 162139587 Common yddG hypothetical protein SC1571 48 None None None 62178788 Common pyrH uridylate kinase SC0218 235 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 62180892 Common nuoH NADH dehydrogenase subunit H SC2322 186 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 62182079 Common dcrB hypothetical protein SC3509 10 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 62178651 Common kefC glutathione-regulated potassium-efflux system protein KefC SC0081 197 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 62179388 Common dinG ATP-dependent DNA helicase DinG SC0818 128 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 62180648 Common yeeF putative APC family, amino acid transport protein SC2078 161 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62181980 Common nirC nitrite transporter NirC SC3410 91 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 62178871 Common tcfB putative fimbrial subunit SC0301 5 None None None 62181036 Common eutS putative carboxysome structural protein, ethanol utilization SC2466 20 COG4810 EutS, Ethanolamine utilization protein Amino acid transport and metabolism 62180870 Common pmrF undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase SC2300 180 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62182842 Common cycA D-alanine/D-serine/glycine permease SC4272 161 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62182737 Common phnB hypothetical protein SC4167 63 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 62178781 Common yaeH putative cytoplasmic protein SC0211 17 None None None 62179026 Common ybaD hypothetical protein SC0456 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 62182890 Common arcC carbamate kinase SC4320 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 62179092 Common priC primosomal replication protein N'' SC0522 14 COG3923 PriC, Primosomal replication protein N'' DNA replication, recombination, and repair 62179722 Common ycfH predicted metallodependent hydrolase SC1152 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 62181463 Common stfF putative minor fimbrial subunit SC2893 9 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179800 Common vmtM Gifsy-1 prophage VmtM SC1230 13 COG4718 COG4718, Phage-related protein Function unknown 62179926 Common pheS phenylalanyl-tRNA synthetase subunit alpha SC1356 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 62180139 Common fdnI formate dehydrogenase-N subunit gamma SC1569 67 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 62182325 Common dnaN DNA polymerase III subunit beta SC3755 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 62179656 Common ycdZ putative inner membrane protein SC1086 15 None None None 62181071 Pathogen - putative cytoplasmic protein SC2501 1 None None None 62180737 Common stcA paral putative fimbrial-like protein SC2167 4 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62181806 Common yhbY RNA-binding protein YhbY SC3236 98 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 62182108 Common - putative inner membrane protein SC3538 3 None None None 62179952 Common yis2 putative integrase protein SC1382 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62181927 Common rpsE 30S ribosomal protein S5 SC3357 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 62181044 Common yfeW hypothetical protein SC2474 132 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 62180172 Common ydcN putative oxidoreductase/putative repressor SC1602 91 COG1396 HipB, Predicted transcriptional regulators Transcription 62180718 Pathogen - hypothetical protein SC2148 1 None None None 62180437 Common yjcS putative hydrolase SC1867 43 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 62179334 Pathogen oadG oxaloacetate decarboxylase subunit gamma SC0764 2 COG3630 OadG, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit Energy production and conversion 62182147 Common yiaD predicted outer membrane lipoprotein SC3577 170 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 62182652 Common vbp putative phage baseplate protein SC4082 38 COG3948 COG3948, Phage-related baseplate assembly protein General function prediction only 62179139 Common ylbE putative cytoplasmic protein SC0569 17 None None None 62182069 Common ftsE cell division protein FtsE SC3499 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 62180339 Common hemK N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase SC1769 213 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 62181341 Common gutQ D-arabinose 5-phosphate isomerase SC2771 152 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 62182965 Common dnaC DNA replication protein DnaC SC4395 38 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 62179230 Common ybeM putative hydrolase SC0660 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 62181603 Common endA DNA-specific endonuclease I SC3033 33 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 62180553 Common fliO flagellar biosynthesis protein FliO SC1983 32 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 62180677 Common wcaI predicted glycosyl transferase SC2107 98 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62181078 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein SC2508 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 62181450 Common ptpS putative synthase SC2880 131 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 62179051 Common cyoE protoheme IX farnesyltransferase SC0481 172 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 62179697 Common flgH flagellar basal body L-ring protein SC1127 96 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 62182539 Common rpe ribulose-phosphate 3-epimerase SC3969 215 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 62178574 Common thrC threonine synthase SC0004 158 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 62180482 Common yecN putative inner membrane protein SC1912 30 COG3788 COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily General function prediction only 62180770 Common cdd cytidine deaminase SC2200 32 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 62178703 Common secA preprotein translocase subunit SecA SC0133 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 62181274 Common iroB putative glycosyl transferase, related to UDP-glucuronosyltransferase SC2704 29 COG1819 COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase Carbohydrate transport and metabolism / Signal transduction mechanisms 162139619 Common yadB glutamyl-Q tRNA(Asp) synthetase SC0185 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 62180350 Pathogen - hypothetical protein SC1780 1 None None None 62180603 Common cbiK synthesis of vitamin B12 adenosyl cobalamide precursor SC2033 25 COG4822 CbiK, Cobalamin biosynthesis protein CbiK, Co2+ chelatase Coenzyme metabolism 62181627 Common agl putative lactoylglutathione lyase SC3057 47 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 62180030 Common ydhK putative inner membrane protein SC1460 41 COG1289 COG1289, Predicted membrane protein Function unknown 62182351 Common atpF F0F1 ATP synthase subunit B SC3781 128 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 62178744 Common stiH putative fimbriae SC0174 8 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179968 Common lpp murein lipoprotein, links outer and inner membranes SC1398 19 COG4238 COG4238, Murein lipoprotein Cell envelope biogenesis, outer membrane 62180983 Common yfeA putative Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2 SC2413 164 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62179874 Common yeaA methionine sulfoxide reductase B SC1304 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 62178687 Common mraW S-adenosyl-methyltransferase MraW SC0117 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 62182445 Common rfaH transcriptional activator RfaH SC3875 40 COG0250 NusG, Transcription antiterminator Transcription 62182132 Common pucJ putative xanthine permease SC3562 99 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 62181081 Common ratB putative outer membrane protein SC2511 8 None None None 62182676 Common malG maltose transporter permease SC4106 183 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 62180625 Common pduL Propanediol utilization SC2055 36 COG4869 PduL, Propanediol utilization protein Secondary metabolites biosynthesis, transport, and catabolism 62181830 Common ptsN sugar-specific enzyme IIA component of PTS SC3260 133 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 62180822 Common ccmH putative heme lyase subunit, cytochrome c-type biogenesis SC2252 87 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 62180621 Common pduG Propanediol utilization: diol dehydratase reactivation SC2051 12 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 62179362 Common bioB biotin synthetase SC0792 181 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 62178972 Common cydB cytochrome BD2 subunit II SC0402 147 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 62179561 Common vmtV Gifsy-2 prophage VmtV SC0991 29 COG5511 COG5511, Bacteriophage capsid protein General function prediction only 62179418 Common etfB putative electron transfer flavoprotein beta subunit SC0848 153 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 62182312 Common torR DNA-binding response regulator in two-component regulatory system with TorS SC3742 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 62181385 Common sipD cell invasion protein SC2815 5 None None None 62183000 Common gpmB phosphoglycerate mutase SC4430 176 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 62178616 Common citB putative transcription regulator sensor for citrate SC0046 178 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 62180268 Common - hypothetical protein SC1698 6 None None None 62179613 Common sopB outer protein SC1043 4 None None None 62180641 Common dacD D-alanyl-D-alanine carboxypeptidase SC2071 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 62178630 Common carA carbamoyl phosphate synthase small subunit SC0060 238 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 62182376 Common yifB putative ATP-dependent protease SC3806 202 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 62182831 Common sgaU L-xylulose 5-phosphate 3-epimerase SC4261 39 COG3623 SgaU, Putative L-xylulose-5-phosphate 3-epimerase Carbohydrate transport and metabolism 62178722 Common aceF dihydrolipoamide acetyltransferase SC0152 198 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 62179820 Pathogen - hypothetical protein SC1250 1 None None None 62179777 Pathogen - hypothetical protein SC1207 1 None None None 62181897 Pathogen - hypothetical protein SC3327 1 None None None 62181443 Common yghJ putative cytoplasmic protein SC2873 42 None None None 62179940 Common ydiT putative ferredoxin SC1370 34 COG2440 FixX, Ferredoxin-like protein Energy production and conversion 62178915 Pathogen ninZ NinZ SC0345 2 None None None 62179574 Common sseI Gifsy-2 prophage putative type III secreted protein SC1004 2 None None None 62179786 Pathogen vhtJ Gifsy-1 prophage head to tail joining protein SC1216 4 None None None 62182371 Common yieP putative regulatory protein, gntR family SC3801 128 COG2186 FadR, Transcriptional regulators Transcription 62182829 Common ptxA L-ascorbate-specific enzyme IIA component of PTS SC4259 46 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 62179735 Common ycfS putative periplasmic protein SC1165 85 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 62179073 Common mdlB putative multidrug transporter membrane\ATP-binding components SC0503 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 162139613 Common metN DL-methionine transporter ATP-binding subunit SC0246 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 62178858 Common - putative cytoplasmic protein SC0288 4 None None None 62179194 Common ybdA enterobactin exporter EntS SC0624 46 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62180215 Common nifJ putative pyruvate-flavodoxin oxidoreductase SC1645 116 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 62178836 Common - putative cytoplasmic protein SC0266 3 None None None 62182221 Common rpmB 50S ribosomal protein L28 SC3651 157 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 62182882 Common mgtA magnesium-transporting ATPase MgtA SC4312 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 62181854 Common yhcM putative ATPase SC3284 103 COG1485 COG1485, Predicted ATPase General function prediction only 62181728 Common rpoD RNA polymerase sigma factor RpoD SC3158 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 62179586 Common pqiB paraquat-inducible protein B SC1016 69 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 62179514 Common ycaR hypothetical protein SC0944 97 COG2835 COG2835, Uncharacterized conserved protein Function unknown 62181357 Common hypA hydrogenase nickel incorporation protein SC2787 88 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 62180067 Common pntA NAD(P) transhydrogenase subunit alpha SC1497 166 COG3288 PntA, NAD/NADP transhydrogenase alpha subunit Energy production and conversion 62182638 Common TnpR transposase of Tn10 SC4068 19 None None None 62181591 Common yhcH putative mannitol dehydrogenase SC3021 27 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 62182784 Pathogen ecnA putative entericidin A precursor SC4214 2 COG5510 COG5510, Predicted small secreted protein Function unknown 62181176 Common - putative bacteriophage protein SC2606 7 None None None 62182920 Pathogen - hypothetical protein SC4350 1 None None None 62182339 Common pstA phosphate transporter permease subunit SC3769 227 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 62180964 Common vacJ lipoprotein precursor SC2394 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 62181506 Common ygdB hypothetical protein SC2936 7 None None None 162139559 Common rimM 16S rRNA-processing protein SC2676 179 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 62179037 Common phnV 2-aminoethylphosphonate transporter, memrane component SC0467 142 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 62182938 Common yjiG hypothetical protein SC4368 12 COG0700 SpmB, Uncharacterized membrane protein Function unknown 62182216 Common rfaQ lipopolysaccharide core biosynthesis protein SC3646 111 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 62180658 Common hisI bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein SC2088 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 62180931 Common - putative amino acid transporter SC2361 150 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62182779 Common groEL chaperonin GroEL SC4209 245 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 62180203 Pathogen - hypothetical protein SC1633 1 None None None 62180478 Common ntpA dATP pyrophosphohydrolase SC1908 41 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 62180587 Common amn AMP nucleosidase SC2017 54 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 62182722 Common actP acetate permease SC4152 168 COG4147 DhlC, Predicted symporter General function prediction only 162139498 Common yeeN hypothetical protein SC4355 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 62181685 Common ygiK putative integral membrane protein, possible transporter SC3115 122 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 62179770 Common - hypothetical protein SC1200 31 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 162139521 Common dapF diaminopimelate epimerase SC3846 202 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 62178766 Common stfC putative fimbrial outer membrane usher SC0196 30 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62180008 Pathogen ssaP Secretion system apparatus SsaP SC1438 1 None None None 62182239 Pathogen - putative cytoplasmic protein SC3669 2 None None None 62180356 Common hyaF putative hydrogenase-1 protein SC1786 20 None None None 62182319 Common yidA predicted hydrolase SC3749 146 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62180947 Common - putative cytoplasmic protein SC2377 8 None None None 62181574 Common rpiA ribose-5-phosphate isomerase A SC3004 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 62178887 Common pepD aminoacyl-histidine dipeptidase (peptidase D) SC0317 64 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 62181393 Common spaO surface presentation of antigens protein SpaO SC2823 9 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 62182550 Common hslU ATP-dependent protease ATP-binding subunit SC3980 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 62181649 Common mac putative methyl-accepting chemotaxis protein SC3079 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62179499 Common ycaO putative cytoplasmic protein SC0929 42 COG1944 COG1944, Uncharacterized conserved protein Function unknown 62178607 Common rpsT 30S ribosomal protein S20 SC0037 203 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 62181704 Common ygiE zinc transporter ZupT SC3134 109 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 62182099 Common - hypothetical protein SC3529 39 COG4952 COG4952, Predicted sugar isomerase Cell envelope biogenesis, outer membrane 162139550 Common ygfB hypothetical protein SC3000 36 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 62181878 Common cafA ribonuclease G SC3308 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 62180764 Common fst putative flutathione S-transferase SC2194 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 62181146 Common rnc ribonuclease III SC2576 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 62182268 Common - unknown protein from prophage CP-933H SC3698 7 COG3680 COG3680, Uncharacterized protein conserved in bacteria Function unknown 62181609 Common yggR putative protein transport SC3039 209 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 62179703 Common - hypothetical protein SC1133 3 None None None 62181653 Common fbp putative ferrichrome-binding periplasmic protein SC3083 96 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 62178708 Common yacF hypothetical protein SC0138 44 COG4582 COG4582, Uncharacterized protein conserved in bacteria Function unknown 62182702 Pathogen - putative outer membrane lipoprotein SC4132 1 None None None 62179501 Common serC phosphoserine aminotransferase SC0931 113 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 62182945 Common - putative cytoplasmic protein SC4375 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180421 Pathogen - hypothetical protein SC1851 1 None None None 62179997 Common ssaG Secretion system apparatus SsaG SC1427 6 None None None 62181066 Common purM phosphoribosylaminoimidazole synthetase SC2496 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 62182511 Pathogen - hypothetical protein SC3941 1 None None None 62182047 Common rbsK putative transcriptional regulator of sugar metabolism SC3477 193 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62181350 Common hycG hydrogenase activity SC2780 192 COG3260 COG3260, Ni,Fe-hydrogenase III small subunit Energy production and conversion 62180517 Pathogen - hypothetical protein SC1947 4 None None None 162139544 Common tolC outer membrane channel protein SC3130 136 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 62181848 Common yhcK transcriptional regulator NanR SC3278 130 COG2186 FadR, Transcriptional regulators Transcription 62182049 Common - putative inner membrane protein SC3479 19 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 62180044 Common rnfD electron transport complex protein RnfD SC1474 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 62181741 Common ygjT putative resistance protein SC3171 104 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 62179507 Common - putative cytoplasmic protein SC0937 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180707 Pathogen - hypothetical protein SC2137 4 None None None 62179487 Common serS seryl-tRNA synthetase SC0917 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 62181542 Pathogen - hypothetical protein SC2972 1 None None None 62182414 Common - possible exported protein SC3844 3 None None None 62180160 Common srfA ssrAB activated gene SC1590 12 None None None 62181989 Common aroK shikimate kinase I SC3419 200 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 62182488 Common yihZ D-tyrosyl-tRNA deacylase SC3918 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 62182491 Pathogen - hypothetical protein SC3921 1 None None None 62180223 Pathogen - hypothetical protein SC1653 1 None None None 62182744 Common adiY transcriptional activator of adiA (AraC/XylS family) SC4174 6 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179476 Common yafC putative transcriptional regulator, lysR family SC0906 135 COG0583 LysR, Transcriptional regulator Transcription 62180130 Common treY putative glycosyl hydrolase SC1560 137 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 62179437 Common ybjC predicted inner membrane protein SC0867 8 None None None 62181022 Pathogen - hypothetical protein SC2452 1 None None None 62181111 Common yfhR putative hydrolase SC2541 101 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 62181227 Common pssA phosphatidylserine synthase SC2657 29 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 62182897 Pathogen - hypothetical protein SC4327 1 None None None 62180570 Common umuC DNA polymerase V subunit UmuC SC2000 181 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 62180347 Common pth peptidyl-tRNA hydrolase SC1777 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 62179601 Common yccV putative inner membrane protein SC1031 29 COG3785 COG3785, Uncharacterized conserved protein Function unknown 62181773 Common gadR transcriptional regulator of sugar metabolism SC3203 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62179602 Common yccW putative SAM-dependent methyltransferase SC1032 141 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 62179316 Common ybgT putative outer membrane lipoprotein SC0746 14 COG4890 COG4890, Predicted outer membrane lipoprotein Function unknown 162139576 Common znuA high-affinity zinc transporter periplasmic component SC1899 168 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 62181731 Common yqjI putative transcriptional regulator SC3161 56 COG1695 COG1695, Predicted transcriptional regulators Transcription 62179099 Common adk adenylate kinase SC0529 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 62179067 Common ybaX queuosine biosynthesis protein QueC SC0497 175 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 62180902 Common yfbQ aminotransferase AlaT SC2332 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 62182908 Common idnT GntP family, L-idonate transport protein SC4338 78 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 62181058 Common - putative permease SC2488 51 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 62180432 Common stbD putative fimbriae; usher SC1862 9 None None None 62180509 Common rpi hypothetical protein SC1939 21 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 62182625 Common hydG transcriptional regulatory protein ZraR SC4055 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 62181892 Common yhdG tRNA-dihydrouridine synthase B SC3322 210 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 62180286 Common yciL 23S rRNA pseudouridylate synthase B SC1716 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 62180837 Common yojI multidrug transporter membrane component/ATP-binding component SC2267 247 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 62179932 Common nlpC lipoprotein SC1362 137 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 62180752 Common bglX beta-D-glucoside glucohydrolase, periplasmic SC2182 130 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 62178735 Common speD S-adenosylmethionine decarboxylase SC0165 30 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 62179729 Common nagZ beta-hexosaminidase SC1159 174 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 62179546 Common - putative replication protein O of prophage CP-933X SC0976 11 None None None 62180826 Common ccmD heme exporter protein C, cytochrome c-type biogenesis protein SC2256 17 COG3114 CcmD, Heme exporter protein D Intracellular trafficking and secretion 62178807 Common rof Rho-binding antiterminator SC0237 12 COG4568 Rof, Transcriptional antiterminator Transcription 62182086 Common yhiI paral putative membrane protein SC3516 132 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 62179415 Common yliC putative ABC transporter periplasmic binding protein SC0845 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62179342 Common galK galactokinase SC0772 91 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 62179985 Common ssaC Secretion system apparatus SsaC SC1415 124 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 62182864 Pathogen - hypothetical protein SC4294 1 None None None 62178776 Common btuF vitamin B12-transporter protein BtuF SC0206 130 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 62182076 Common tcp methyl-accepting transmembrane citrate/phenol chemoreceptor SC3506 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 62180264 Common fabI enoyl-(acyl carrier protein) reductase SC1694 230 COG0623 FabI, Enoyl- acyl-carrier-protein 62178759 Common hrpB ATP-dependent RNA helicase HrpB SC0189 132 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 62179408 Common pflF putative pyruvate formate lyase SC0838 59 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 62179810 Common - hypothetical protein SC1240 2 None None None 62179843 Common - putative cytoplasmic protein SC1273 44 None None None 62182727 Common nrfB cytochrome c-type protein NrfB SC4157 21 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 62179519 Common smtA putative metallothionein SmtA SC0949 74 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 62181042 Common ypfG putative periplasmic protein SC2472 15 None None None 62180427 Pathogen - hypothetical protein SC1857 1 None None None 62181976 Common yhfC hypothetical protein SC3406 56 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 62181993 Common yrfC putative inner membrane protein SC3423 6 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 62179694 Common flgE flagellar hook protein FlgE SC1124 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 62182255 Common mgtC Mg2+ transport protein SC3685 120 COG1285 SapB, Uncharacterized membrane protein Function unknown 162139548 Common yggJ hypothetical protein SC3034 195 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 162139509 Common tyrB aromatic amino acid aminotransferase SC4127 82 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 62181257 Common yfjG hypothetical protein SC2687 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 62182010 Common yfcI putative cytoplasmic protein SC3440 29 COG5464 COG5464, Uncharacterized conserved protein Function unknown 62181128 Common yfhG hypothetical protein SC2558 10 None None None 62182598 Pathogen gns putative cytoplasmic protein SC4028 2 None None None 62180256 Common sapB ABC superfamily (membrane), peptide transport protein SC1686 218 COG4168 SapB, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 62180456 Common yebF putative periplasmic protein SC1886 8 None None None 62178718 Common yicJ putative permease of the Na+:galactoside symporter family SC0148 79 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62181569 Common pepP proline aminopeptidase P II SC2999 247 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 62182446 Common yigC 3-octaprenyl-4-hydroxybenzoate decarboxylase SC3876 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 62180861 Common cinA putative cytoplasmic protein SC2291 10 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 62181987 Common damX hypothetical protein SC3417 15 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 62180575 Common int putative P4-type integrase SC2005 12 None None None 62182748 Common melB melibiose:sodium symporter SC4178 76 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62179457 Common ybjS putative nucleoside-diphosphate-sugar epimerase SC0887 116 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 162139564 Common cysM cysteine synthase B SC2439 230 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 62182586 Common yijC DNA-binding transcriptional repressor FabR SC4016 42 COG1309 AcrR, Transcriptional regulator Transcription 62182995 Common nadR nicotinamide-nucleotide adenylyltransferase SC4425 31 COG3172 NadR, Predicted ATPase/kinase involved in NAD metabolism Coenzyme metabolism 62179860 Common yeaM putative regulator (AraC/XylS family) SC1290 66 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62180655 Common hisH imidazole glycerol phosphate synthase subunit HisH SC2085 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 62179160 Pathogen fimW putative fimbrial protein SC0590 2 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 62182543 Common fpr ferredoxin-NADP reductase SC3973 115 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 62178599 Common asl putative arylsulfatase SC0029 2 None None None 62180276 Common ribA GTP cyclohydrolase II SC1706 192 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 62180049 Common ydgT oriC-binding nucleoid-associated protein SC1479 12 None None None 62178660 Common rluA 23S rRNA/tRNA pseudouridine synthase A SC0090 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 62179717 Common yis2 putative integrase protein SC1147 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178752 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase SC0182 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 62181860 Common oadA pyruvate carboxylase subunit B SC3290 175 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 62180816 Common tfa bacteriophage tail fiber assembly protein (pseudogene) SC2246 7 None None None 62181972 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein SC3402 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 62182667 Common - putative inner membrane protein SC4097 10 None None None 62182193 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase SC3623 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 62181363 Common ygbA hypothetical protein SC2793 20 None None None 62179974 Common ttrA Tetrathionate reductase complex, subunit A SC1404 77 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62182521 Common cpxP periplasmic repressor CpxP SC3951 18 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 62180309 Common oppD oligopeptide transporter ATP-binding component SC1739 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 62182684 Common plsB glycerol-3-phosphate acyltransferase SC4114 48 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 62180468 Common yebA hypothetical protein SC1898 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 62181874 Common yhcR hypothetical protein SC3304 13 None None None 62182252 Common slsA putative inner membrane protein SC3682 65 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 62181624 Common nupG MFS family, nucleoside transport SC3054 36 None None None 62178705 Common akr putative aldo/keto reductase SC0135 204 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 62182954 Common yjiY putative carbon starvation protein SC4384 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 62182058 Pathogen yhhV putative cytoplasmic protein SC3488 5 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 62179796 Pathogen vmtV Gifsy-1 prophage VmtV SC1226 3 COG5492 COG5492, Bacterial surface proteins containing Ig-like domains Cell motility and secretion 62182914 Pathogen - hypothetical protein SC4344 1 None None None 162139554 Common ygaT hypothetical protein SC2721 12 None None None 62182390 Common rhlB ATP-dependent RNA helicase RhlB SC3820 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 62182429 Common rhtB homoserine/homoserine lactone efflux protein SC3859 106 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 62181954 Common yheM hypothetical protein SC3384 33 COG2923 DsrF, Uncharacterized protein involved in the oxidation of intracellular sulfur Inorganic ion transport and metabolism 62180058 Common rstB sensor protein RstB SC1488 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62179942 Common ydiR electron transfer flavoprotein subunit YdiR SC1372 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 62180193 Common yohL putative cytoplasmic protein SC1623 59 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 62181908 Common yrdC putative ribosome maturation factor SC3338 237 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 62180248 Common ycjX putative ATPase SC1678 42 COG3106 COG3106, Predicted ATPase General function prediction only 62181223 Common yfiF predicted methyltransferase SC2653 213 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 162139500 Common fklB peptidyl-prolyl cis-trans isomerase SC4271 145 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 62179021 Common - hypothetical protein SC0451 34 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 62181618 Common yggN hypothetical protein SC3048 11 None None None 62181143 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ SC2573 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 62181130 Common purG phosphoribosylformylglycinamidine synthase SC2560 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 62182492 Common - hypothetical protein SC3922 6 None None None 62180583 Pathogen - hypothetical protein SC2013 1 None None None 62181315 Common proX glycine betaine transporter periplasmic subunit SC2745 51 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 62181750 Common yhaH putative inner membrane protein SC3180 45 COG3152 COG3152, Predicted membrane protein Function unknown 62181049 Common - putative inner membrane protein SC2479 11 None None None 62179006 Common sbcC exonuclease subunit SbcC SC0436 84 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 62182822 Common yjfN putative inner membrane protein SC4252 8 None None None 162139602 Common aroG phospho-2-dehydro-3-heoxyheptonate aldolase SC0759 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 62179557 Common rzpD Gifsy-2 prophage RzpD SC0987 9 None None None 62182126 Common yhjV putative HAAAP family transport protein SC3556 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62179653 Common ycdW paral putative oxidoreductase SC1083 228 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 62180000 Common ssaJ Secretion system apparatus SsaJ SC1430 28 COG4669 EscJ, Type III secretory pathway, lipoprotein EscJ Intracellular trafficking and secretion 62180448 Common yebY putative periplasmic or exported protein SC1878 11 None None None 62182788 Common blc outer membrane lipoprotein Blc SC4218 69 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 62179523 Common ycbK putative outer membrane protein SC0953 63 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 62182844 Common - hypothetical protein SC4274 3 None None None 62179594 Common yccR putative DNA transformation protein SC1024 20 COG3070 TfoX, Regulator of competence-specific genes Transcription 62180937 Common folC bifunctional folylpolyglutamate synthase/ dihydrofolate synthase SC2367 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 62180743 Common yehS putative cytoplasmic protein SC2173 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 62181097 Common dmsA putative anaerobic dimethylsulfoxide reductase SC2527 184 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62181869 Common yhcN putative outer membrane protein SC3299 10 None None None 62181667 Common - putative cytoplasmic protein SC3097 3 None None None 62179869 Common chuR arylsulfatase regulator SC1299 95 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 62181470 Common gudD d-glucarate dehydratase SC2900 54 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62179469 Common clpS ATP-dependent Clp protease adaptor protein ClpS SC0899 121 COG2127 COG2127, Uncharacterized conserved protein Function unknown 62179666 Common mdoC glucans biosynthesis protein SC1096 25 None None None 62182660 Common - hypothetical protein SC4090 7 None None None 62180955 Common mepA penicillin-insensitive murein endopeptidase SC2385 39 COG3770 MepA, Murein endopeptidase Cell envelope biogenesis, outer membrane 62181031 Common eutM putative detox protein in ethanolamine utilization SC2461 46 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62179550 Pathogen - hypothetical protein SC0980 4 None None None 62181820 Common yrbE putative ABC superfamily (membr) transport protein SC3250 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 62182879 Common treC trehalose-6-phosphate hydrolase SC4309 165 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 62179665 Common ymdC putative phospholipase SC1095 138 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 62181548 Common ygeR putative metalloendopeptidase SC2978 185 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 62179325 Common nadA quinolinate synthetase SC0755 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 62182174 Common aldB aldehyde dehydrogenase B (lactaldehyde dehydrogenase) SC3604 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62182552 Common ftsN essential cell division protein SC3982 21 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 62178956 Common rtn putative Diguanylate cyclase/phosphodiesterase domain 1 SC0386 160 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 62179889 Common selD selenophosphate synthetase SC1319 138 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 62180720 Pathogen - hypothetical protein SC2150 2 None None None 62181527 Common kduI 5-keto-4-deoxyuronate isomerase SC2957 27 COG3717 KduI, 5-keto 4-deoxyuronate isomerase Carbohydrate transport and metabolism 62178624 Common citE2 putative citrate lyase beta chain (acyl lyase subunit) SC0054 109 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 62179708 Common yceD hypothetical protein SC1138 54 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 62180354 Common hyaD hydrogenase 1 maturation protease SC1784 72 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 62182988 Common deoD purine nucleoside phosphorylase SC4418 95 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 62179281 Common frdA tricarballylate dehydrogenase SC0711 52 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 62181171 Common - putative bacteriophage protein SC2601 5 None None None 62182320 Common gudP putative permease SC3750 134 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 62179265 Common ybeX putative CBS domain-containing protein SC0695 220 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 62179083 Common ylaC putative inner membrane protein SC0513 10 None None None 62181778 Common yraP hypothetical protein SC3208 68 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 62180524 Common sdiA DNA-binding transcriptional activator SC1954 29 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 62179880 Common ydjI Hypothetical protein ydjI SC1310 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 62181755 Common yhaO putative HAAAP family transport protein SC3185 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 62180342 Common lolB outer membrane lipoprotein LolB SC1772 53 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 62182966 Common dnaT primosomal protein I SC4396 8 COG5529 COG5529, Pyocin large subunit General function prediction only 62181519 Common aas bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase SC2949 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62182039 Common asd aspartate-semialdehyde dehydrogenase SC3469 196 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 62180025 Common nemA N-ethylmaleimide reductase, FMN-linked SC1455 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 62180796 Pathogen - putative inner membrane protein SC2226 1 None None None 62182817 Common - resembles eukaryotic-type potassium channels SC4247 12 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 62180605 Common cbiH precorrin-3B C17-methyltransferase SC2035 179 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 62178889 Common frsA fermentation/respiration switch protein SC0319 22 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 62180483 Common yecO putative SAM-dependent methyltransferase SC1913 60 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62180298 Common ompW outer membrane protein W SC1728 71 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 62182308 Common yhjA putative cytochrome c peroxidase SC3738 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 62182575 Common pflC pyruvate formate lyase II activase SC4005 62 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 62179311 Common sucB dihydrolipoamide acetyltransferase SC0741 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 62180788 Common yeiH putative inner membrane protein SC2218 110 COG2855 COG2855, Predicted membrane protein Function unknown 62179360 Common ybhB predicted kinase inhibitor SC0790 107 COG1881 COG1881, Phospholipid-binding protein General function prediction only 62181944 Common rplC 50S ribosomal protein L3 SC3374 230 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 62179530 Pathogen - hypothetical protein SC0960 1 None None None 62179534 Common - putative cytoplasmic protein SC0964 4 None None None 62182315 Common dgoA galactonate dehydratase SC3745 115 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 62178804 Common ldcC lysine decarboxylase 2, constitutive SC0234 88 COG1982 LdcC, Arginine/lysine/ornithine decarboxylases Amino acid transport and metabolism 62178626 Common citX2 putative cytoplasmic protein SC0056 25 COG3697 CitX, Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) Coenzyme metabolism / Lipid metabolism 62179123 Common sfbC putative binding-protein-dependent transport systems inner membrane component SC0553 102 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 162139532 Common gntK gluconate kinase 1 SC3472 80 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 62180968 Common pgtB Phosphoglycerate transport: protein for signal transmission SC2398 209 COG4192 COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system Signal transduction mechanisms 162139595 Common rluC 23S rRNA pseudouridylate synthase C SC1134 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 62182052 Common ugpQ cytoplasmic glycerophosphodiester phosphodiesterase SC3482 144 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 62182347 Common atpD F0F1 ATP synthase subunit beta SC3777 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 62181541 Common pagC outer membrane protein (associated with virulence) SC2971 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 62181935 Common rpsQ 30S ribosomal protein S17 SC3365 237 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 62180476 Common ruvC Holliday junction resolvase SC1906 195 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 62178768 Common stfE putaive minor fimbrial subunit SC0198 8 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62179584 Common ycbY putative N6-adenine-specific DNA methylase SC1014 163 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 62181672 Pathogen - hypothetical protein SC3102 4 None None None 62179791 Pathogen vgp7 Gifsy-1 prophage DNA packaging protein gp9 SC1221 3 None None None 162139496 Common rimI ribosomal-protein-alanine N-acetyltransferase SC4406 204 COG0456 RimI, Acetyltransferases General function prediction only 62181325 Common yqaB predicted hydrolase SC2755 185 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 62181554 Common xerD site-specific tyrosine recombinase XerD SC2984 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 62179357 Common hutC histidine utilization repressor SC0787 118 COG2188 PhnF, Transcriptional regulators Transcription 62180701 Common yegO multidrug efflux system subunit MdtC SC2131 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 62181922 Common rpsK 30S ribosomal protein S11 SC3352 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 62182978 Common prfC peptide chain release factor 3 SC4408 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 62179392 Common ybiO predicted mechanosensitive channel SC0822 131 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 62180071 Common ydgE multidrug efflux system protein MdtI SC1501 95 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 62179642 Common ycdC putative transcriptional repressor (TetR/AcrR family) SC1072 105 COG1309 AcrR, Transcriptional regulator Transcription 62179376 Common ybhM putative integral membrane protein SC0806 45 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 62179097 Common recR recombination protein RecR SC0527 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 62181919 Common rplQ 50S ribosomal protein L17 SC3349 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 62179347 Common modE DNA-binding transcriptional dual regulator SC0777 59 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 62182471 Common ybhA putative hydrolase SC3901 133 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62182022 Pathogen - hypothetical protein SC3452 1 None None None 62180082 Common ynfI twin-argninine leader-binding protein DmsD SC1512 27 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 62180729 Common yegV putative sugar kinase SC2159 128 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 62182353 Common atpB F0F1 ATP synthase subunit A SC3783 206 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 62179626 Common hpaI 4-hydroxyphenylacetate catabolism SC1056 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 62179431 Common ybjI putative hydrolase SC0861 76 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62182167 Common xylR xylose operon regulatory protein (AraC/XylS family) SC3597 113 COG1609 PurR, Transcriptional regulators Transcription 62180543 Pathogen - hypothetical protein SC1973 2 None None None 62182753 Common dmsA putative anaerobic dimethyl sulfoxide reductase, subunit A SC4183 181 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62180611 Common cbiC precorrin-8X methylmutase SC2041 116 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 62181117 Common csiE stationary phase inducible protein CsiE SC2547 13 COG3711 BglG, Transcriptional antiterminator Transcription 62182812 Common purA adenylosuccinate synthetase SC4242 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 62180972 Common ddg lipid A biosynthesis palmitoleoyl acyltransferase SC2402 100 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 62181692 Common ygiY sensor protein QseC SC3122 213 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62180291 Common trpC bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase SC1721 220 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 62181308 Pathogen - hypothetical protein SC2738 1 None None None 62181950 Common fusA elongation factor G SC3380 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 62181206 Common - Gifsy-1 prophage protein SC2636 4 None None None 62182362 Common yieN paral putative regulator protein SC3792 82 COG0714 COG0714, MoxR-like ATPases General function prediction only 62179835 Common - putative inner membrane protein SC1265 67 COG3038 CybB, Cytochrome B561 Energy production and conversion 62181766 Common garL alpha-dehydro-beta-deoxy-D-glucarate aldolase SC3196 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 62180843 Common rcsB DNA-binding response regulator in two-component regulatory system with RcsC and YojN SC2273 170 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62182706 Pathogen - putative inner membrane or exported SC4136 1 None None None 62182356 Common gidB glucose-inhibited division protein B SC3786 203 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 62178823 Common ydhP putative drug efflux protein (perhaps for chloramphenicol) SC0253 223 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179473 Pathogen - hypothetical protein SC0903 1 None None None 62180181 Common sgcQ putative nucleoside triphosphatase SC1611 38 COG0434 SgcQ, Predicted TIM-barrel enzyme General function prediction only 62182901 Common valS valyl-tRNA synthetase SC4331 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 62182093 Common opdA oligopeptidase A SC3523 126 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 62179279 Common ybfN putative lipoprotein SC0709 8 None None None 62179458 Common ybjT putative nucleoside-diphosphate-sugar epimerase SC0888 105 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 62181966 Common yheT predicted hydrolase SC3396 71 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 62179428 Common deoR DNA-binding transcriptional repressor SC0858 113 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 62181180 Common - hypothetical protein SC2610 8 None None None 62180060 Common ompN outer membrane protein N, non-specific porin SC1490 29 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 62182235 Common rpoZ DNA-directed RNA polymerase subunit omega SC3665 110 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 62178886 Common prfH peptide chain release factor-like protein SC0316 215 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 62180271 Common yciH translation initiation factor Sui1 SC1701 51 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 62181083 Pathogen sinI putative outer membrane protein SC2513 2 None None None 62181168 Common - putative bacteriophage protein SC2598 7 None None None 62181237 Pathogen - hypothetical protein SC2667 1 None None None 62182941 Common yjiN putative inner membrane protein SC4371 49 COG2733 COG2733, Predicted membrane protein Function unknown 62180278 Pathogen - hypothetical protein SC1708 1 None None None 62180667 Common - hypothetical protein SC2097 8 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62178761 Common fhuA ferrichrome outer membrane transporter SC0191 115 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 62181267 Common insN Transposase insN for insertion sequence element IS SC2697 60 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180754 Common pbpG D-alanyl-D-alanine endopeptidase SC2184 146 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 62180768 Common yohJ hypothetical protein SC2198 45 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 62179949 Common ydiN putative MFS family transport protein SC1379 89 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62179401 Common - hypothetical protein SC0831 3 None None None 62179253 Common ybeQ putative TPR repeat protein SC0683 110 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 62181844 Common nanK N-acetylmannosamine kinase SC3274 50 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 62178583 Common dnaJ chaperone protein DnaJ SC0013 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 62181785 Common yhbU putative protease SC3215 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 162139527 Common ligB NAD-dependent DNA ligase LigB SC3662 217 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 62181939 Pathogen - hypothetical protein SC3369 3 None None None 62179399 Common ompX outer membrane protein X SC0829 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 62180413 Common yebR putative GAF domain-containing protein SC1843 83 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 62178911 Common - hypothetical protein SC0341 34 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 62180097 Common ydfH putative regulatory protein, gntR family SC1527 127 COG1802 GntR, Transcriptional regulators Transcription 62180623 Common pduJ Propanediol utilization: polyhedral bodies SC2053 46 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62179618 Common hpaC 4-hydroxyphenylacetate catabolism SC1048 100 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 62180745 Common yehU paral putative sensor/kinase in regulatory system SC2175 105 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 62180162 Common srfC ssrAB activated gene: predicted coiled-coil structure SC1592 14 COG4458 SrfC, Uncharacterized protein conserved in bacteria, putative virulence factor Function unknown 62182985 Common deoC deoxyribose-phosphate aldolase SC4415 138 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 62180408 Common kdgR putative transcriptional repressor (IclR family) SC1838 123 COG1414 IclR, Transcriptional regulator Transcription 62178642 Common fixC putative oxidoreductase FixC SC0072 136 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 62179955 Common ydiJ paral putative oxidase SC1385 202 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 62181105 Common iscA iron-sulfur cluster assembly protein SC2535 163 COG0316 IscA, Uncharacterized conserved protein Function unknown 62180300 Common yciC hypothetical protein SC1730 15 None None None 62178833 Common - putative cytoplasmic protein SC0263 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 62179205 Common ybdM putative transcriptional regulator SC0635 17 COG1475 Spo0J, Predicted transcriptional regulators Transcription 62181287 Pathogen - hypothetical protein SC2717 1 None None None 62179446 Common ulaA ascorbate-specific PTS system enzyme IIC SC0876 36 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 62179224 Pathogen - hypothetical protein SC0654 1 None None None 62179135 Common ylbA hypothetical protein SC0565 33 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 162139543 Common oat putrescine--2-oxoglutarate aminotransferase SC3165 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 62181038 Pathogen - hypothetical protein SC2468 2 None None None 62179211 Common - putative component of anaerobic dehydrogenase SC0641 25 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 62180694 Common udk uridine kinase SC2124 100 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 62178658 Common imp organic solvent tolerance protein SC0088 118 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 62179296 Common kdpA potassium-transporting ATPase subunit A SC0726 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 62179332 Common ymbI transcriptional regulator, lysR family SC0762 191 COG0583 LysR, Transcriptional regulator Transcription 62178669 Common yabI putative DedA family, membrane protein SC0099 136 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 62178909 Common cro regulatory protein cro (Antirepressor) SC0339 17 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 62179899 Common spy periplasmic protein SC1329 21 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 62180645 Common - putative cytoplasmic protein SC2075 16 COG0393 COG0393, Uncharacterized conserved protein Function unknown 62179301 Common ybgJ putative carboxylase SC0731 101 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 62182930 Common - putative inner membrane or exported SC4360 35 COG3439 COG3439, Uncharacterized conserved protein Function unknown 62182537 Common yneB aldolase SC3967 74 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 62179353 Common ybhE 6-phosphogluconolactonase SC0783 53 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 62178672 Common tbpA thiamin transporter substrate binding subunit SC0102 57 COG4143 TbpA, ABC-type thiamine transport system, periplasmic component Coenzyme metabolism 62182227 Common rph ribonuclease PH SC3657 189 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 62180113 Common yneG putative cytoplasmic protein SC1543 15 None None None 62181282 Common virK virulence gene; homologous sequence to virK in Shigella SC2712 21 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 62180372 Common rpmF 50S ribosomal protein L32 SC1802 4 None None None 62181589 Common yggG putative Zn-dependent protease with possible chaperone function SC3019 114 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 62181512 Common ptsP fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain SC2942 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 62182874 Common relB bifunctional antitoxin/transcriptional repressor RelB SC4304 13 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 62180904 Common yfbS putative response regulator SC2334 129 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 62180366 Common dadA D-amino acid dehydrogenase small subunit SC1796 131 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 62181216 Common nadB L-aspartate oxidase SC2646 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 62182154 Common yis2 putative integrase protein SC3584 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180807 Pathogen - hypothetical protein SC2237 1 None None None 62181073 Pathogen - hypothetical protein YPMT169 SC2503 5 None None None 62179635 Common - Suppression of copper sensitivity: lipoprotein modification in lgt mutants of E coli SC1065 85 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 62182288 Common - hypothetical protein SC3718 2 None None None 62180779 Common folE GTP cyclohydrolase I SC2209 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 62179966 Common lppB putative methyl-accepting chemotaxis protein SC1396 19 COG4238 COG4238, Murein lipoprotein Cell envelope biogenesis, outer membrane 62181487 Common fucK L-fuculokinase SC2917 181 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 62182603 Common rplK 50S ribosomal protein L11 SC4033 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 62181883 Common yhdA regulatory protein CsrD SC3313 144 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 62181426 Common rpoS RNA polymerase sigma factor RpoS SC2856 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 62181441 Common ygcH putative cytoplasmic protein SC2871 31 None None None 62178729 Common ptp conserved hypothetical protein-putative phosphotyrosine protein phosphatase SC0159 23 COG4551 COG4551, Predicted protein tyrosine phosphatase General function prediction only 62181559 Common ygfZ putative global regulator SC2989 99 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 62181029 Common eutE putative aldehyde oxidoreductase in ethanolamine utilization SC2459 214 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 62180551 Common fliM flagellar motor switch protein FliM SC1981 109 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 62180679 Common wcaG GDP fucose synthetase SC2109 224 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 62179119 Common ybbP putative inner membrane protein SC0549 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 62180616 Common pduA Propanediol utilization: polyhedral bodies SC2046 46 COG4577 CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62178637 Common caiA crotonobetainyl-CoA dehydrogenase SC0067 160 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 62179490 Common - anaerobic dimethyl sulfoxide reductase, subunit C SC0920 23 COG3302 DmsC, DMSO reductase anchor subunit General function prediction only 62182118 Common dctA C4-dicarboxylate transporter DctA SC3548 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 62179053 Common cyoC cytochrome o ubiquinol oxidase subunit III SC0483 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 62179145 Common ppiB peptidyl-prolyl cis-trans isomerase B (rotamase B) SC0575 200 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 62179855 Common yeaQ hypothetical protein SC1285 16 COG2261 COG2261, Predicted membrane protein Function unknown 62181306 Common mocR putative regulatory protein, gntR family SC2736 186 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 62182716 Common gth putative glutathione S-transferase SC4146 86 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62180536 Common fliT flagellar biosynthesis protein FliT SC1966 10 None None None 62178579 Common yaaH hypothetical protein SC0009 53 COG1584 COG1584, Predicted membrane protein Function unknown 62179489 Common dmsB anaerobic dimethyl sulfoxide reductase, subunit B SC0919 163 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 62181244 Common rplS 50S ribosomal protein L19 SC2674 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 62182629 Pathogen - hypothetical protein SC4059 1 None None None 62181832 Common ptsO phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) SC3262 124 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 62181694 Common ygiN putative cytoplasmic protein SC3124 14 COG1359 COG1359, Uncharacterized conserved protein Function unknown 62178969 Common res DNA restriction (DNA helicase SC0399 39 COG3587 COG3587, Restriction endonuclease Defense mechanisms 62180927 Common - hypothetical protein SC2357 2 None None None 62178597 Pathogen - hypothetical protein SC0027 1 None None None 62180627 Common pduN Propanediol utilization: polyhedral bodies SC2057 14 COG4576 CcmL, Carbon dioxide concentrating mechanism/carboxysome shell protein Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion 62182129 Common dppC dipeptide transporter SC3559 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62179071 Common ybaO putative transcriptional regulator (AsnC familiy) SC0501 149 COG1522 Lrp, Transcriptional regulators Transcription 62179772 Common fdM DNA adenine methylase SC1202 8 None None None 62180326 Common narJ nitrate reductase 1, delta subunit, chaperone required for molybdenum cofactor assembly in nitrate reductase 1 SC1756 54 COG2180 NarJ, Nitrate reductase delta subunit Energy production and conversion 62182334 Pathogen - hypothetical protein SC3764 1 None None None 62181456 Common eno phosphopyruvate hydratase SC2886 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 62178681 Pathogen - hypothetical protein SC0111 1 None None None 62180785 Common cirA ferric iron-catecholate outer membrane transporter SC2215 132 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 62179028 Common ribH riboflavin synthase subunit beta SC0458 229 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 62180989 Common xapB MFS superfamily, xanthosine permease SC2419 30 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62178970 Pathogen - putative cytoplasmic protein SC0400 1 None None None 162139588 Common ynfA hypothetical protein SC1521 79 COG1742 COG1742, Uncharacterized conserved protein Function unknown 62180830 Common napC cytochrome c-type protein NapC SC2260 46 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 62179779 Pathogen - putative prophage membrane protein SC1209 4 None None None 62182289 Common - integral membrane protein SC3719 57 None None None 62182867 Common - putative cytoplasmic protein SC4297 11 None None None 62179576 Common yedK hypothetical protein SC1006 96 COG2135 COG2135, Uncharacterized conserved protein Function unknown 62181343 Common norV anaerobic nitric oxide reductase flavorubredoxin SC2773 127 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 62182838 Common rplI 50S ribosomal protein L9 SC4268 187 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 62180950 Common fabB 3-oxoacyl-(acyl carrier protein) synthase I SC2380 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62182566 Common - putative cytoplasmic protein SC3996 6 None None None 62183002 Common creA hypothetical protein SC4432 57 COG3045 CreA, Uncharacterized protein conserved in bacteria Function unknown 62181492 Common gcvA DNA-binding transcriptional activator GcvA SC2922 189 COG0583 LysR, Transcriptional regulator Transcription 62182423 Pathogen - hypothetical membrane protein SC3853 2 None None None 62179699 Common flgJ peptidoglycan hydrolase SC1129 74 COG3951 COG3951, Rod binding protein Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 62180266 Common rnb exoribonuclease II SC1696 191 COG4776 Rnb, Exoribonuclease II Transcription 62181050 Common ypfI putative acetyltransferase SC2480 48 COG1444 COG1444, Predicted P-loop ATPase fused to an acetyltransferase General function prediction only 62181447 Common cysH phosphoadenosine phosphosulfate reductase SC2877 157 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 62179826 Common pagC PhoP regulated: reduced macrophage survival SC1256 11 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 62181019 Common amiA N-acetylmuramoyl-l-alanine amidase I SC2449 181 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 62180957 Common yfcB N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase SC2387 223 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 62180671 Common wcaL putative glycosyl transferase in colanic acid gene cluster SC2101 214 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 62182876 Common nrdG anaerobic ribonucleotide reductase-activating protein SC4306 64 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 62182130 Common dppB dipeptide transporter permease DppB SC3560 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 62179787 Common vgpW Gifsy-1 prophage head-tail preconnector gp4 SC1217 34 COG5511 COG5511, Bacteriophage capsid protein General function prediction only 62180201 Common - putative ABC-type transport system probable membrane spanning protein SC1631 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 62182601 Common secE preprotein translocase subunit SecE SC4031 68 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 162139538 Common secG preprotein translocase subunit SecG SC3232 118 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 62182735 Common lpxO putative dioxygenase for synthesis of lipid SC4165 37 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 62180835 Common napD periplasmic nitrate reductase SC2265 14 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 162139513 Common rplL 50S ribosomal protein L7/L12 SC4036 215 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 62178632 Common caiF DNA-binding transcriptional activator CaiF SC0062 4 None None None 62182017 Common malT transcriptional regulator MalT SC3447 87 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 62182310 Common torA trimethylamine N-oxide reductase subunit SC3740 161 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 62182906 Common yjgQ putative permease SC4336 110 COG0795 COG0795, Predicted permeases General function prediction only 62180507 Common araH putative intracellular protease/amidase SC1937 104 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 62179188 Common ybdZ putative cytoplasmic protein SC0618 27 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 62180218 Common intR Putative lambdoid prophage Rac integrase SC1648 9 None None None 62180466 Common yis2 putative integrase protein SC1896 140 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 62178948 Common ygiP putative transcriptional regulator, LysR family SC0378 157 COG0583 LysR, Transcriptional regulator Transcription 62183011 Common - putative inner membrane protein SC4441 7 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 62182760 Pathogen - putative bacterial regulatory proteins, luxR family SC4190 3 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62180962 Common yfcZ Hypothetical protein yfcZ SC2392 15 COG3691 COG3691, Uncharacterized protein conserved in bacteria Function unknown 62178900 Pathogen eae Eae protein SC0330 3 None None None 62179908 Common celG hypothetical protein SC1338 59 COG3394 COG3394, Uncharacterized protein conserved in bacteria Function unknown 62181715 Common yqiJ putative inner membrane protein SC3145 12 None None None 62182379 Common ilvD dihydroxy-acid dehydratase SC3809 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 62179382 Common ybhR putative ABC superfamily (membrane) transport protein SC0812 183 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 62182532 Common ydeV autoinducer-2 (AI-2) kinase SC3962 178 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 62179359 Common hutH histidine ammonia-lyase SC0789 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 62179199 Common entA 2,3-dihydroxybenzoate-2,3-dehydrogenase SC0629 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 62178699 Common ftsA cell division protein FtsA SC0129 178 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 62180598 Common cbiO synthesis of vitamin B12 adenosyl cobalamide precursor SC2028 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 62182298 Common yidE hypothetical protein SC3728 58 COG2985 COG2985, Predicted permease General function prediction only 62180772 Common yeiS putative inner membrane protein SC2202 4 None None None 62182106 Common yurK putative regulatory protein, gntR family SC3536 140 COG2188 PhnF, Transcriptional regulators Transcription 62182963 Common mdoB phosphoglycerol transferase I SC4393 45 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 62180006 Common ssaN type III secretion system ATPase SC1436 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 62178926 Common - scaffolding protein SC0356 3 None None None 62180430 Common int putative cytoplasmic protein SC1860 13 None None None 62181768 Common gatZ putative tagatose 6-phosphate kinase 1 SC3198 32 COG4573 GatZ, Predicted tagatose 6-phosphate kinase Carbohydrate transport and metabolism 62180697 Common alkA 3-methyl-adenine DNA glycosylase II SC2127 88 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 162139593 Common ydjM hypothetical protein SC1342 38 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 62181020 Common hemF coproporphyrinogen III oxidase SC2450 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 62182323 Common gyrB DNA gyrase subunit B SC3753 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 62178653 Common apaH diadenosine tetraphosphatase SC0083 101 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 62179090 Common - putative transposase SC0520 31 COG5464 COG5464, Uncharacterized conserved protein Function unknown 62180503 Pathogen - putative cytoplasmic protein SC1933 1 None None None 62179701 Common flgL flagellar hook-associated protein FlgL SC1131 96 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 62179892 Common ynjH putative periplasmic protein SC1322 9 None None None 62179407 Common ybiV(1) putative hydrolase of the HAD superfamily SC0837 95 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 62181294 Common gabT 4-aminobutyrate aminotransferase SC2724 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 62178960 Pathogen - putative response regulator SC0390 1 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 62179658 Common csgF curli assembly protein CsgF SC1088 9 None None None 62178742 Common yadG putative ABC-type multidrug transport system, ATPase component SC0172 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 62179295 Common kdpB potassium-transporting ATPase subunit B SC0725 232 COG2216 KdpB, High-affinity K+ transport system, ATPase chain B Inorganic ion transport and metabolism 62178692 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase SC0122 220 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 62182952 Common yjiA putative GTP-binding protein YjiA SC4382 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 62181272 Common hin H inversion: regulation of flagellar gene expression by site-specific inversion of DNA SC2702 127 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 62180026 Common ydhM putative transcriptional repressor (TetR/AcrR family) SC1456 56 COG1309 AcrR, Transcriptional regulator Transcription 62179953 Common - putative cytoplasmic protein SC1383 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 62180405 Common yebO putative periplasmic or exported protein SC1835 9 None None None 62180895 Common nuoE NADH dehydrogenase subunit E SC2325 157 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 62181647 Common uxuB putative D-mannonate oxidoreductase SC3077 88 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 62180735 Common stcC paral putative outer membrane protein SC2165 32 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 62179078 Common ybaY glycoprotein/polysaccharide metabolism SC0508 29 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 62181783 Common yhbS putative ABC superfamily (membrane) transport protein SC3213 93 COG3153 COG3153, Predicted acetyltransferase General function prediction only 162139624 Common ilvI acetolactate synthase 3 catalytic subunit SC0113 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 62178873 Common tcfD putative fimbrail protein SC0303 4 None None None 62180036 Common pdxH pyridoxamine 5'-phosphate oxidase SC1466 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 62180894 Common nuoF NADH dehydrogenase I subunit F SC2324 167 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 62181191 Pathogen - hypothetical protein SC2621 4 None None None 62181382 Pathogen - putative cytoplasmic protein SC2812 1 None None None 62182392 Common rho transcription termination factor Rho SC3822 201 COG1158 Rho, Transcription termination factor Transcription 62181204 Common - putative DNA-binding protein SC2634 6 None None None 62181808 Common dacB D-alanyl-D-alanine carboxypeptidase/endopeptidase SC3238 109 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 62180716 Common - hypothetical protein SC2146 2 None None None 62178572 Common thrA bifunctional aspartokinase I/homeserine dehydrogenase I SC0002 236 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 62182803 Common yjeE putative ATPase SC4233 207 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 62180996 Common zipA cell division protein ZipA SC2426 44 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 62182903 Common pepA leucyl aminopeptidase SC4333 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 62179806 Common stf side tail fiber protein SC1236 14 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 62182654 Common gtrB putative phage glycosyltransferase SC4084 175 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 62179142 Common purK phosphoribosylaminoimidazole carboxylase ATPase subunit SC0572 192 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 62180388 Common pabB para-aminobenzoate synthase component I SC1818 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 62180831 Common napB diheme cytochrome c550 SC2261 41 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 62181974 Common fic cell filamentation protein Fic SC3404 38 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 62183007 Common sthD putative fimbrial subunit SC4437 9 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 62181344 Common ygbD nitric oxide reductase SC2774 215 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 62182769 Pathogen - hypothetical protein SC4199 1 None None None 62182617 Common nudC NADH pyrophosphatase SC4047 107 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 62179425 Common yliI putative dehydrogenase SC0855 108 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 62181651 Common yghU putative glutathione S-transferase YghU SC3081 96 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 62180225 Common ogt O-6-alkylguanine-DNA:cysteine-protein methyltransferase SC1655 187 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 62180220 Common dbpA ATP-dependent RNA helicase DbpA SC1650 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 62182204 Common rfaF ADP-heptose:LPS heptosyltransferase II SC3634 105 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 62182486 Common yihX phosphatase SC3916 33 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 62181843 Common yhcH putative cytoplasmic protein SC3273 30 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 62181186 Pathogen gtgA hypothetical protein SC2616 1 None None None 62181354 Common hycC formate hydrogenlyase subunit 3 SC2784 207 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 62181764 Common garK glycerate kinase I SC3194 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 62181640 Common yjiD putative cytoplasmic protein SC3070 3 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 62180316 Common hns global DNA-binding transcriptional dual regulator H-NS SC1746 26 COG2916 Hns, DNA-binding protein H-NS General function prediction only 62179944 Common ydiP putative transcription regulator, AraC family SC1374 118 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 62179999 Pathogen ssaI Secretion system apparatus SsaI SC1429 1 None None None 62182183 Common yibL hypothetical protein SC3613 13 None None None 62181431 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase SC2861 187 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 162139578 Common yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF SC1846 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 62182927 Common - putative cytoplasmic protein SC4357 18 COG3811 COG3811, Uncharacterized protein conserved in bacteria Function unknown 62180174 Common ydcL putative outer membrane lipoprotein SC1604 13 None None None 62179615 Common copS Copper resistance; histidine kinase SC1045 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 62180515 Common - putative cell wall-associated hydrolase SC1945 23 None None None 62181598 Common yqgC putative cytoplasmic protein SC3028 3 None None None 62182494 Common fdhE formate dehydrogenase accessory protein FdhE SC3924 42 COG3058 FdhE, Uncharacterized protein involved in formate dehydrogenase formation Posttranslational modification, protein turnover, chaperones 62180381 Common fadD long-chain-fatty-acid--CoA ligase SC1811 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 62182710 Common - putative inner membrane protein SC4140 116 COG1340 COG1340, Uncharacterized archaeal coiled-coil protein Function unknown 62179232 Common lipA lipoyl synthase SC0662 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 62181535 Pathogen - putative outer membrane protein SC2965 1 None None None 62180705 Common - putative inner membrane protein SC2135 6 None None None 62180345 Common ychM putative sulfate transporter YchM SC1775 155 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 62180860 Common elaD deubiquitinase SC2290 2 None None None 62179819 Pathogen - hypothetical protein SC1249 1 None None None 62182084 Common yhhJ putative ABC superfamily (atp_bind/membrane) transport protein SC3514 115 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 62179844 Common yodA hypothetical protein SC1274 19 COG3443 COG3443, Predicted periplasmic or secreted protein General function prediction only 62180680 Common gmd GDP-D-mannose dehydratase in colanic acid gene cluster SC2110 228 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 62178865 Pathogen safD putative fimbriae subunit SC0295 2 None None None 62181368 Pathogen sprB transcriptional regulator SC2798 1 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 62178856 Common yjiW hypothetical protein SC0286 5 None None None 62178922 Common - hypothetical protein SC0352 4 None None None 62180137 Common sfcA NAD-linked malate dehydrogenase SC1567 201 COG0281 SfcA, Malic enzyme Energy production and conversion 62179167 Common rfbI putative glycosyl translocase SC0597 8 COG2246 COG2246, Predicted membrane protein Function unknown 62179318 Common ybgC acyl-CoA thioester hydrolase YbgC SC0748 134 COG0824 FcbC, Predicted thioesterase General function prediction only 62178981 Common prpD 2-methylcitrate dehydratase SC0411 65 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 62182452 Common yigZ hypothetical protein SC3882 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 62182007 Common feoA ferrous iron transport protein A SC3437 37 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 62182274 Common ptkB putative periplasmic protein SC3704 18 COG3414 SgaB, Phosphotransferase system, galactitol-specific IIB component Carbohydrate transport and metabolism 62179243 Common cobC alpha ribazole-5'-P phosphatase in cobalamin synthesis SC0673 177 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 62178733 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2 SC0163 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 62181166 Common - putative bacteriophage protein SC2596 17 None None None 62181821 Common yrbF putative ABC transporter ATP-binding protein YrbF SC3251 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 62182478 Common yihO putative GPH family transport protein SC3908 83 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 62178993 Common yceE putative permease SC0423 105 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62178794 Common yaeT outer membrane protein assembly factor YaeT SC0224 162 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 62181890 Common panF sodium/panthothenate symporter SC3320 174 COG4145 PanF, Na+/panthothenate symporter Coenzyme metabolism 62180656 Common hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase SC2086 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 62181395 Pathogen invI surface presentation of antigens; secretory proteins SC2825 2 None None None 62179988 Pathogen sseA Secretion system effector SseA SC1418 1 None None None 62182205 Common rfaC ADP-heptose:LPS heptosyl transferase I SC3635 89 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 62182636 Common iclR acetate operon transcriptional repressor IclR SC4066 122 COG1414 IclR, Transcriptional regulator Transcription 62180102 Common ydeJ competence damage-inducible protein A SC1532 164 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 62178614 Common - putative nitrite reductase SC0044 4 None None None 62182695 Common dnaB replicative DNA helicase SC4125 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 62180047 Common rnfA Na(+)-translocating NADH-quinone reductase subunit E SC1477 76 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 62179039 Common phnT 2-aminoethylphosphonate transporter,ATPase component SC0469 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 62178954 Pathogen - putative inner membrane protein SC0384 6 COG3710 CadC, DNA-binding winged-HTH domains Transcription 62179183 Common ybdJ putative inner membrane protein SC0613 6 None None None 62182435 Common dlhH putative dienelactone hydrolase family SC3865 118 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 62182214 Common rfaP lipopolysaccharide core biosynthesis; phosphorylation of core heptose SC3644 10 None None None 62182464 Pathogen - putative cytoplasmic protein SC3894 2 None None None 62180231 Common - putative cytoplasmic protein SC1661 30 COG3382 COG3382, Uncharacterized conserved protein Function unknown 62182631 Common metA homoserine O-succinyltransferase SC4061 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 62179516 Pathogen - hypothetical protein SC0946 1 None None None 62180661 Common gnd 6-phosphogluconate dehydrogenase SC2091 187 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 62179859 Common yeaN putative MFS family transport protein (amino acid/amine transport) SC1289 79 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 162139557 Common yfjD hypothetical protein SC2680 218 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 62181856 Common degQ serine endoprotease SC3286 221 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 62178838 Common - putative cytoplasmic protein SC0268 49 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 62180065 Common ydgI putative amino acid transporter SC1495 137 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 62180502 Common flhD transcriptional activator FlhD SC1932 27 None None None 62180916 Common gntR putative transcriptional regulator SC2346 126 COG1609 PurR, Transcriptional regulators Transcription 62180125 Common mbhL putative hydrogenase-1 large subunit SC1555 98 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 62180514 Common yecA hypothetical protein SC1944 83 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 62180578 Common - putative branched chain amino acid transport protein SC2008 9 None None None 62181299 Common ygaV putative regulatory protein, arsR family SC2729 83 COG0640 ArsR, Predicted transcriptional regulators Transcription 62179226 Common dpiA DNA-binding response regulator in two-component regulatory system with citA SC0656 117 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 62181593 Common yjjN putative zinc-binding dehydrogenase SC3023 196 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 62180399 Common rrmA 23S rRNA methyltransferase A SC1829 99 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 62178938 Pathogen - hypothetical protein SC0368 1 None None None 62180887 Common nuoM NADH dehydrogenase subunit M SC2317 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 62179192 Common fepG iron-enterobactin transporter permease SC0622 191 COG4779 FepG, ABC-type enterobactin transport system, permease component Inorganic ion transport and metabolism 62180412 Common proQ putative solute/DNA competence effector SC1842 35 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 62180945 Pathogen - putative cytoplasmic protein SC2375 4 None None None 62181576 Pathogen - hypothetical protein SC3006 1 None None None 62182045 Common yhhX putative oxidoreductase SC3475 161 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 62182417 Common yigA hypothetical protein SC3847 41 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 62180152 Common ansP APC family, L-asparagine transport protein SC1582 170 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 62182266 Common - putative cytoplasmic protein SC3696 20 COG4737 COG4737, Uncharacterized protein conserved in bacteria Function unknown 62180010 Common ssaR type III secretion system protein SC1440 128 COG4790 EscR, Type III secretory pathway, component EscR Intracellular trafficking and secretion 62182541 Common yiiQ putative periplasmic protein SC3971 11 None None None 62181683 Common yiiZ putative dicarboxylate-binding periplasmic protein SC3113 101 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 62181148 Common lepA GTP-binding protein LepA SC2578 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 62181520 Common galR DNA-binding transcriptional repressor SC2950 127 COG1609 PurR, Transcriptional regulators Transcription 62181141 Common yfhL putative ferredoxin SC2571 104 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 62182385 Common ppiC peptidyl-prolyl cis-trans isomerase C (rotamase C) SC3815 140 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 62182686 Common lexA LexA repressor SC4116 174 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 62181811 Common rpmA 50S ribosomal protein L27 SC3241 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 62179934 Common ydiU hypothetical protein SC1364 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 62180077 Common bioD putative dithiobiotin synthetase SC1507 144 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 62180877 Common menB naphthoate synthase SC2307 179 COG0447 MenB, Dihydroxynaphthoic acid synthase Coenzyme metabolism 62180330 Common narX nitrate/nitrite sensor protein NarX SC1760 146 COG3850 NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific Signal transduction mechanisms 62180857 Common glpA sn-glycerol-3-phosphate dehydrogenase subunit A SC2287 163 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 62182051 Common yhhA hypothetical protein SC3481 6 None None None 62182880 Common pttB trehalose(maltose)-specific PTS system components IIBC SC4310 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 62180766 Common pcaK putative sugar transporter SC2196 100 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 62182889 Common otcC ornithine carbamoyltransferase SC4319 239 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 62179733 Common ycfQ putative transcriptional repressor (TetR/AcrR family) SC1163 103 COG1309 AcrR, Transcriptional regulator Transcription