Photobacterium profundum SS9 chromosome 1, complete sequence NC_006370 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 54309432 Common - putative transthyretin family protein PBPRA2264 63 COG2351 COG2351, Transthyretin-like protein General function prediction only 54308504 Common - hypothetical protein PBPRA1311 2 None None None 54310080 Common - putative undecaprenyl diphosphate synthase PBPRA2964 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 54308738 Common - bicyclomycin/multidrug efflux system PBPRA1545 208 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54309343 Nonpathogen - hypothetical protein PBPRA2163 1 None None None 54307269 Common - Hypothetical flagellar basal-body rod modification protein FlgD PBPRA0032 93 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 54309574 Common - hypothetical membrane-fusion protein PBPRA2408 137 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54310102 Common xni exonuclease IX PBPRA2986 210 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 54309523 Common - hypothetical aspartate racemase PBPRA2356 81 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 54310162 Common - oxaloacetate decarboxylase subunit gamma PBPRA3052 7 COG3630 OadG, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit Energy production and conversion 54307629 Common - hypothetical protein PBPRA0415 3 None None None 54309862 Common - hypothetical protein PBPRA2702 26 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 54307633 Common - 2-isopropylmalate synthase PBPRA0419 216 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 54308450 Common - hypothetical formate-dependent nitrite reductase complex, NrfG protein PBPRA1257 27 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 54308469 Common - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase PBPRA1276 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 54308667 Nonpathogen - hypothetical protein PBPRA1474 13 None None None 54310364 Common - putative MSHA pilin protein MshA PBPRA3276 8 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 54309675 Common - putative pseudouridine synthase Rlu family protein PBPRA2511 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 54307295 Common - hypothetical protein PBPRA0058 61 COG2119 COG2119, Predicted membrane protein Function unknown 54308290 Common - putative peptidyl-prolyl cis-trans isomerase B PBPRA1097 198 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 54309299 Common - hypothetical transcriptional regulator, LysR family PBPRA2119 172 COG0583 LysR, Transcriptional regulator Transcription 54307539 Common - putative bacterioferritin PBPRA0318 107 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 54309349 Common - imidazolonepropionase PBPRA2170 98 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 54310408 Common pgi glucose-6-phosphate isomerase PBPRA3328 193 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 54310014 Common - hypothetical protein PBPRA2889 167 COG1576 COG1576, Uncharacterized conserved protein Function unknown 54308952 Common - nicotinate phosphoribosyltransferase PBPRA1763 93 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 54309354 Common - hypothetical phosphatase PBPRA2175 101 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 54308204 Common dinG ATP-dependent DNA helicase DinG PBPRA1011 139 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 54308931 Common - hypothetical protein PBPRA1742 20 COG2999 GrxB, Glutaredoxin 2 Posttranslational modification, protein turnover, chaperones 54310142 Common - hypothetical protein PBPRA3032 58 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 54308285 Common hisG ATP phosphoribosyltransferase PBPRA1092 214 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 54308364 Nonpathogen - hypothetical protein PBPRA1171 1 None None None 54309751 Common - DNA topoisomerase III PBPRA2590 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 54308509 Common - hypothetical protein PBPRA1316 7 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 54310347 Common - putative phosphocarrier protein NPr PBPRA3259 150 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 54309847 Common - putative protein-tyrosine-phosphatase PBPRA2687 134 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 54309399 Common - D-lactate dehydrogenase PBPRA2224 52 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 54307968 Common - hypothetical protein PBPRA0773 5 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 54307559 Common rpmD 50S ribosomal protein L30 PBPRA0338 132 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 54308215 Common - transcription activator ToxR PBPRA1022 36 COG3710 CadC, DNA-binding winged-HTH domains Transcription 54307435 Common - hypothetical protein PBPRA0214 13 None None None 54309975 Common - hypothetical protein PBPRA2821 112 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54309046 Common - putative formate dehydrogenase, cytochrome B556subunit PBPRA1860 67 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 54309364 Common - putative amino acid ABC transporter, permease protein PBPRA2186 172 COG4597 BatB, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 54308515 Nonpathogen - hypothetical protein PBPRA1322 1 None None None 54308645 Nonpathogen - hypothetical protein PBPRA1452 1 None None None 54308866 Common - hypothetical transposase PBPRA1677 69 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308660 Common - putative trimethylamine-N-oxide reductase PBPRA1467 172 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54307697 Common - leucyl aminopeptidase PBPRA0484 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 54307957 Common - hypothetical DNA-binding protein PBPRA0762 66 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 54309174 Common - putative glutamate synthase (NADPH) small subunit PBPRA1989 238 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 54309998 Common - ribose-phosphate pyrophosphokinase PBPRA2849 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 54307354 Common - hypothetical protein PBPRA0133 40 COG3148 COG3148, Uncharacterized conserved protein Function unknown 54308741 Common - hypothetical protein PBPRA1548 114 None None None 54307285 Common - flagellar motor protein MotA PBPRA0048 97 COG1291 MotA, Flagellar motor component Cell motility and secretion 54308371 Common - anaerobic C4-dicarboxylate transporter PBPRA1178 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 54309628 Common - hypothetical competence damage protein CinA PBPRA2464 157 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 54308459 Common - putative peptidyl-prolyl cis-trans isomerase B PBPRA1266 183 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 54308861 Common - hypothetical non-ribosomal peptide synthetase PBPRA1668 211 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 54308566 Common - hypothetical protein PBPRA1373 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54308639 Common - Putative lactoylglutathione lyase PBPRA1446 18 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 54309135 Common - Hypothetical pseudouridylate synthase PBPRA1949 203 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 54310037 Common - putative amidotransferase PBPRA2912 72 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 54309311 Common - hypothetical transcription regulator PBPRA2131 134 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54309018 Common - Putative Cbb3-type cytochrome oxidase, cytochrome c subunit PBPRA1832 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 54309838 Common - hypothetical protein PBPRA2678 123 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54307926 Common - transcriptional regulator PhoU PBPRA0731 194 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 54309616 Common cmk cytidylate kinase PBPRA2451 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 54308377 Common - Putative phosphotyrosine protein phosphatase PBPRA1184 135 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 54307260 Common fliG flagellar motor switch protein G PBPRA0023 123 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 54308047 Common - putative NapD protein PBPRA0852 27 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 54308103 Common flgK flagellar hook-associated protein FlgK PBPRA0910 119 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 54308989 Common - hypothetical Type I restriction enzyme EcoEIspecificity protein (S protein) PBPRA1802 83 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 54307745 Common gltB glutamate synthase subunit alpha PBPRA0540 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 54309325 Common - hypothetical methyl-accepting chemotaxis protein PBPRA2145 157 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54307705 Nonpathogen - hypothetical protein PBPRA0493 1 None None None 54307691 Common - hypothetical protein PBPRA0478 38 COG1288 COG1288, Predicted membrane protein Function unknown 54309539 Common - putative transposase and inactivated derivative PBPRA2372 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308059 Common - putative cysteine synthase A PBPRA0864 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 54310523 Common nudE ADP-ribose diphosphatase NudE PBPRA3470 135 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 54309937 Common - hypothetical protein PBPRA2783 13 COG3457 COG3457, Predicted amino acid racemase Amino acid transport and metabolism 54310608 Common - hypothetical protein PBPRA3570 4 None None None 54309416 Nonpathogen - hypothetical protein PBPRA2248 4 None None None 54307392 Common - hypothetical protein PBPRA0171 60 COG3346 COG3346, Uncharacterized conserved protein Function unknown 54310372 Common - hypothetical MSHA biogenesis protein MshK PBPRA3284 3 None None None 54310458 Common aspA aspartate ammonia-lyase PBPRA3391 228 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 54310129 Nonpathogen - hypothetical protein PBPRA3019 1 None None None 54310644 Common - F0F1 ATP synthase subunit alpha PBPRA3606 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 54308757 Common - putative iron(III) ABC transporter, periplasmic iron-compound-binding protein PBPRA1564 68 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 54310447 Common - fumarate reductase subunit C PBPRA3380 23 COG3029 FrdC, Fumarate reductase subunit C Energy production and conversion 54309145 Common - hypothetical protein PBPRA1959 7 None None None 54309001 Common - hypothetical protein PBPRA1814 2 None None None 54309487 Common - hypothetical transcriptional regulator protein, LysR family PBPRA2320 166 COG0583 LysR, Transcriptional regulator Transcription 54307814 Common nusA transcription elongation factor NusA PBPRA0611 218 COG0195 NusA, Transcription elongation factor Transcription 54307737 Common - hypothetical membrane protein PBPRA0532 187 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 54310401 Common - putative sulfite reductase (NADPH) flavoprotein alpha-component PBPRA3321 108 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 54309850 Common - hypothetical lipoprotein PBPRA2690 14 None None None 54309697 Common - putative inner membrane protein PBPRA2535 13 None None None 54310620 Common trkA potassium transporter peripheral membrane component PBPRA3582 154 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 54309810 Common - putative DedD protein PBPRA2650 32 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 54307471 Common - hypothetical protein PBPRA0250 21 COG3074 COG3074, Uncharacterized protein conserved in bacteria Function unknown 54308331 Common - hypothetical protein PBPRA1138 160 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 54310155 Common - S-ribosylhomocysteinase PBPRA3045 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 54309733 Common - ribonuclease T PBPRA2572 67 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 54310542 Common rbn ribonuclease BN PBPRA3489 155 COG1295 Rbn, Predicted membrane protein Function unknown 54309509 Common - hypothetical protein PBPRA2342 3 None None None 54307505 Common - ribulose-phosphate 3-epimerase PBPRA0284 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 54309905 Nonpathogen - hypothetical protein PBPRA2751 1 None None None 54308916 Common - hypothetical protein PBPRA1727 4 None None None 54308920 Common - hypothetical protein PBPRA1731 2 None None None 54310022 Common - lipoprotein PBPRA2897 24 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 54310535 Common - putative general secretion pathway protein C PBPRA3482 29 COG3031 PulC, Type II secretory pathway, component PulC Intracellular trafficking and secretion 54307351 Common - hypothetical protein PBPRA0130 6 None None None 54307340 Common - putative TatA protein PBPRA0119 33 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 54308005 Common - thiamine biosynthesis protein ThiI PBPRA0810 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 54308460 Common - hypothetical 17 kDa Surface antigen PBPRA1267 14 COG4520 LipA, Surface antigen Cell envelope biogenesis, outer membrane 54310384 Common - putative transposase PBPRA3297 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309381 Common - hypothetical protein PBPRA2203 22 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 54307258 Common - Hypothetical FliE-like hook basal body protein PBPRA0021 56 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 54309454 Common - putative rpiR-family transcriptional regulatory protein PBPRA2286 119 COG1737 RpiR, Transcriptional regulators Transcription 54309405 Common uvrC excinuclease ABC subunit C PBPRA2237 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 54309011 Common - hypothetical ISPpu15, transposase Orf2 PBPRA1825 58 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309534 Common - hypothetical protein PBPRA2367 6 None None None 54309894 Common - putative ABC-type arginine transport system, permease component PBPRA2740 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 54310204 Common - hypothetical protein PBPRA3106 6 None None None 54308229 Common - flavodoxin FldA PBPRA1036 74 COG0716 FldA, Flavodoxins Energy production and conversion 54310511 Common - putative pyrazinamidase/nicotinamidase PncA PBPRA3449 72 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 54307283 Common - hypothetical protein PBPRA0046 10 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 54308187 Common - hypothetical protein PBPRA0994 40 COG4805 COG4805, Uncharacterized protein conserved in bacteria Function unknown 54307347 Common - putative ferritin PBPRA0126 84 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 54307831 Common - hypothetical protein PBPRA0628 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 54308686 Nonpathogen - hypothetical protein PBPRA1493 3 None None None 54308844 Common - hypothetical protein PBPRA1651 6 None None None 54308118 Common fliH flagellar assembly protein H PBPRA0925 42 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 54307573 Common - hypothetical intercellular adhesion protein A PBPRA0352 197 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 54308671 Common - hypothetical protein PBPRA1478 10 None None None 54310306 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase PBPRA3218 225 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 54307960 Common - hypothetical protein PBPRA0765 62 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 54308336 Common - nitric oxide reductase PBPRA1143 240 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 161936308 Common - elongation factor P PBPRA1915 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 54309747 Common - hypothetical protein PBPRA2586 21 COG3082 COG3082, Uncharacterized protein conserved in bacteria Function unknown 54309606 Common - hypothetical peptide ABC transporter, periplasmic peptide-binding protein PBPRA2441 203 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 54307498 Common - hypothetical fimbrial assembly protein PilO PBPRA0277 46 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 54310223 Common - chromosome replication initiation inhibitor protein PBPRA3126 100 COG0583 LysR, Transcriptional regulator Transcription 54308798 Common - putative hymidylate kinase PBPRA1605 2 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 54307586 Common - putative ABC-type antimicrobial peptide transport system, permease component PBPRA0372 33 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 54308883 Common - hypothetical protein PBPRA1694 85 COG0582 XerC, Integrase DNA replication, recombination, and repair 54309916 Common - hypothetical Response regulator ofcitrate/malate metabolism PBPRA2762 45 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 54307700 Common - hypothetical protein PBPRA0487 10 None None None 54308383 Common - hypothetical protein PBPRA1190 30 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 54307446 Common - hypothetical protein PBPRA0225 116 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 54310587 Common - hipothetical sensory box/GGDEF family protein PBPRA3534 192 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 54310571 Common - putative transmembrane protein PBPRA3518 29 COG2259 COG2259, Predicted membrane protein Function unknown 54310410 Common alr alanine racemase PBPRA3330 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 54308572 Common - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase PBPRA1379 140 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 54308523 Common - hypothetical protein PBPRA1330 27 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 54309358 Nonpathogen - hypothetical protein PBPRA2179 1 None None None 54309496 Common - putative biotin synthase PBPRA2329 177 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 54309583 Common - nitroreductase A PBPRA2417 98 COG0778 NfnB, Nitroreductase Energy production and conversion 54310502 Common rplK 50S ribosomal protein L11 PBPRA3436 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 54308106 Common - flagellin PBPRA0913 114 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 54309194 Common folE GTP cyclohydrolase I PBPRA2009 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 54310314 Common - putative methyltransferase PBPRA3226 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 54307601 Common - putative Universal stress protein UspA PBPRA0387 108 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 54309498 Common - hypothetical ATP-dependent protease La (LON) domain protein PBPRA2331 33 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 54307598 Common - fructose-1,6-bisphosphatase PBPRA0384 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 54307332 Common - putative aminopeptidase P PBPRA0111 193 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 54307829 Common - hypothetical protein PBPRA0626 158 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 54308255 Common - hypothetical protein PBPRA1062 63 COG3803 COG3803, Uncharacterized protein conserved in bacteria Function unknown 54307646 Common rpsU 30S ribosomal protein S21 PBPRA0433 105 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 54307251 Common - Hypothetical flagellar biosynthetic protein FliR PBPRA0014 92 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 54307865 Common - hypothetical protein PBPRA0662 48 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 54309651 Common - anthranilate synthase component II PBPRA2487 236 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 54308795 Nonpathogen - hypothetical protein PBPRA1602 1 None None None 54308520 Nonpathogen - hypothetical protein PBPRA1327 1 None None None 54310089 Common - tRNA pseudouridine synthase C PBPRA2973 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 54307387 Common - hypothetical O-Methyltransferase-relateprotein PBPRA0166 30 COG3315 COG3315, O-Methyltransferase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 54309066 Common - hypothetical protein PBPRA1880 9 None None None 54307532 Common - hypothetical protein PBPRA0311 36 COG2923 DsrF, Uncharacterized protein involved in the oxidation of intracellular sulfur Inorganic ion transport and metabolism 54308341 Common - putative pseudouridine synthase family 1protein PBPRA1148 202 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 54308146 Common - putative thiol:disulfide interchange protein DsbE PBPRA0953 137 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 54309756 Common - putative protease IV PBPRA2595 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 54309285 Common - putative ExbD, Biopolymer transport protein ExbD/TolR PBPRA2105 3 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 54309373 Common - hypothetical protein PBPRA2195 119 COG0730 COG0730, Predicted permeases General function prediction only 54307835 Common - phosphopentomutase PBPRA0632 70 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 54308445 Common - Hypothetical pyruvate formate lyase-activating enzyme PBPRA1252 89 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 54307820 Common - lipoprotein NlpI PBPRA0617 37 COG4785 NlpI, Lipoprotein NlpI, contains TPR repeats General function prediction only 54307860 Common - hypothetical serine/threonine protein kinase PBPRA0657 147 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 54309930 Common - putative PTS system, cellobiose-specific IIBcomponent PBPRA2776 30 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 54308126 Common fliQ flagellar biosynthesis protein FliQ PBPRA0933 67 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 54309546 Common - putative metallothionein SmtA PBPRA2379 74 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 54309281 Common - Putative heme iron utilization protein PBPRA2101 18 COG3721 HugX, Putative heme iron utilization protein Inorganic ion transport and metabolism 54309601 Common - putative ATPase PBPRA2436 42 COG3106 COG3106, Predicted ATPase General function prediction only 54308123 Common fliM flagellar motor switch protein FliM PBPRA0930 113 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 54309963 Common - hypothetical protein PBPRA2809 54 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 54309158 Common - hypothetical Y4jO PBPRA1973 11 None None None 54307408 Common - putative ATP-dependent DNA helicase RecG PBPRA0187 216 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 54308020 Common - Na(+)-translocating NADH-quinone reductase subunit C PBPRA0825 46 COG2869 NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC Energy production and conversion 54308929 Common - hypothetical protein PBPRA1740 7 COG4318 COG4318, Uncharacterized protein conserved in bacteria Function unknown 54310650 Common - Putative ParB family protein PBPRA3612 185 COG1475 Spo0J, Predicted transcriptional regulators Transcription 54308155 Common fadJ multifunctional fatty acid oxidation complex subunit alpha PBPRA0962 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 54308006 Common - Putative 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme PBPRA0811 57 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 54310343 Common - RNA polymerase factor sigma-54 PBPRA3255 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 54310589 Common fre FMN reductase PBPRA3536 105 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 54309098 Nonpathogen - hypothetical protein PBPRA1912 1 None None None 54310096 Common - putative Zn-ribbon-containing protein PBPRA2980 13 COG5595 COG5595, Zn-ribbon-containing, possibly nucleic-acid-binding protein General function prediction only 54308875 Nonpathogen - hypothetical protein PBPRA1686 1 None None None 54309780 Common - putative transcriptional regulator PBPRA2619 23 None None None 54308420 Common - Putative efflux (PET) family transporter PBPRA1227 62 COG1289 COG1289, Predicted membrane protein Function unknown 54308711 Nonpathogen - hypothetical protein PBPRA1518 3 None None None 54309594 Common - Hypothetical enzyme of sugar metabolism PBPRA2429 78 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54307655 Common - hypothetical protein PBPRA0442 32 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 54307753 Common - hypothetical protein PBPRA0548 4 None None None 54309023 Common - hypothetical protein PBPRA1837 53 COG2836 COG2836, Uncharacterized conserved protein Function unknown 161936327 Common - bifunctional riboflavin kinase/FMN adenylyltransferase PBPRA0590 211 COG0196 RibF, FAD synthase Coenzyme metabolism 54307763 Common - uracil-DNA glycosylase PBPRA0558 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 54308762 Common - hypothetical protein PBPRA1569 6 None None None 54308137 Common - putative SOJ-like and chromosome partitioning protein PBPRA0944 204 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54308567 Common - hypothetical protein PBPRA1374 43 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309826 Nonpathogen - hypothetical protein PBPRA2666 1 None None None 54309248 Common - hypothetical protein PBPRA2064 36 COG2378 COG2378, Predicted transcriptional regulator Transcription 54308701 Nonpathogen - hypothetical protein PBPRA1508 1 None None None 54309029 Common - putative thermostable carboxypeptidase 1 PBPRA1843 82 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 54308349 Common - Putative outer membrane lipoprotein PBPRA1156 6 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 54309538 Common - putative transposase PBPRA2371 134 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310361 Common - hypothetical protein PBPRA3273 12 None None None 54309765 Common - hypothetical protein PBPRA2604 30 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 54307575 Common - hypothetical polysaccharide export protein PBPRA0354 32 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 54310462 Common - putative Multiple antibiotic transporter PBPRA3396 29 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 54308938 Nonpathogen - hypothetical protein PBPRA1749 2 None None None 54308963 Common - Hypothetical ATP-dependent protease LA-related protein PBPRA1774 129 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 54308429 Common - hypothetical protein PBPRA1236 21 COG2501 COG2501, Uncharacterized conserved protein Function unknown 54309958 Nonpathogen - hypothetical protein PBPRA2804 1 None None None 54308637 Common - 6-phosphogluconate dehydrogenase PBPRA1444 178 COG0362 Gnd, 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 54309266 Common - putative UDP-glucose 4-epimerase gi|28899174|ref|NP_798779.1| UDP-glucose 4-epimerase PBPRA2082 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 54309774 Common - putative regulator protein PBPRA2613 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 54308311 Common - excinuclease ABC subunit B PBPRA1118 230 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 54307793 Common - putative MviN protein PBPRA0588 182 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 54307998 Common - phosphatidylglycerophosphatase A PBPRA0803 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 54310164 Common - aspartate kinase PBPRA3066 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 54310537 Common hslO Hsp33-like chaperonin PBPRA3484 135 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 54310373 Common - hypothetical MSHA biogenesis protein MshJ PBPRA3285 15 COG3883 COG3883, Uncharacterized protein conserved in bacteria Function unknown 54309434 Common - hypothetical xanthine/uracil permease PBPRA2266 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 54308182 Common - hypothetical methyl-accepting chemotaxis protein PBPRA0989 158 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309698 Common dgt deoxyguanosinetriphosphate triphosphohydrolase PBPRA2536 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 54307651 Common uppP undecaprenyl pyrophosphate phosphatase PBPRA0438 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 54309577 Common - Hypothetical MutT/nudix family protein PBPRA2411 118 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 54309832 Common - putative MazF protein PBPRA2672 33 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 161936332 Common - esterase YqiA PBPRA0454 47 COG3150 COG3150, Predicted esterase General function prediction only 54309340 Common - hypothetical protein PBPRA2160 227 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309375 Common - hypothetical protein PBPRA2197 41 COG3434 COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains Signal transduction mechanisms 54310592 Common - hypothetical protein PBPRA3539 3 None None None 54309689 Common - Hypothetical nitrate reductase large subunit PBPRA2525 193 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54310350 Common - hypothetical protein PBPRA3262 60 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 54307994 Common - Putative 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II PBPRA0799 231 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 54308019 Common - Na(+)-translocating NADH-quinone reductase subunit B PBPRA0824 76 COG1805 NqrB, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB Energy production and conversion 54310517 Common - hypothetical outer membrane cobalamin receptor protein PBPRA3464 129 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 54308194 Common - Putative transcriptionalregulator PBPRA1001 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54308414 Common - uridine phosphorylase PBPRA1221 98 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 54309232 Nonpathogen - hypothetical protein PBPRA2048 1 None None None 54308074 Common - hypothetical protein PBPRA0880 4 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 54307650 Common - hypothetical 2-amino-4-hydroxy-6-hydroxymethyldihydr opteridine pyrophosphokinase PBPRA0437 164 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 54310357 Common - putative rod shape-determining protein MreC PBPRA3269 138 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 54308201 Common - putative transcriptional regulator, MarR family PBPRA1008 83 COG1846 MarR, Transcriptional regulators Transcription 54310282 Common - dihydrolipoamide dehydrogenase PBPRA3194 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 54308603 Common - hypothetical protein PBPRA1410 159 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 54309705 Common - hypothetical protein PBPRA2543 37 COG2378 COG2378, Predicted transcriptional regulator Transcription 54310434 Common - putative nucleotide-binding protein PBPRA3354 207 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 54310506 Common - hypothetical protein PBPRA3444 96 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 54309087 Common - hypothetical oxidoreductase, Gfo/Idh/MocA family PBPRA1901 65 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 54308442 Common - hypothetical protein PBPRA1249 3 None None None 54308387 Common - acyl carrier protein S-malonyltransferase PBPRA1194 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 54309738 Common - putative glutaredoxin-related protein PBPRA2577 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 54307456 Common tpiA triosephosphate isomerase PBPRA0235 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 54308439 Common - hypothetical protein PBPRA1246 22 None None None 54308168 Common - putative methylated DNA-proteincysteine methyltransferase PBPRA0975 100 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 54309809 Common - putative bacteriocin production protein PBPRA2649 65 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 161936281 Common rplL 50S ribosomal protein L7/L12 PBPRA3433 209 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 54307788 Common nhaA pH-dependent sodium/proton antiporter PBPRA0583 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 54308833 Common - hypothetical transposase PBPRA1640 21 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307379 Common glpT sn-glycerol-3-phosphate transporter PBPRA0158 87 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 54309113 Common yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF PBPRA1927 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 54308562 Common - Hypothetical methyl-accepting chemotaxis protein PBPRA1369 129 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54307908 Common - putative transposase and inactivatedderivatives PBPRA0713 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309474 Common - putative permease of the drug/metabolite transporter (DMT) superfamily PBPRA2307 76 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 54309269 Common ebgC cryptic beta-D-galactosidase subunit beta PBPRA2085 6 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 54310425 Common - adenylosuccinate synthetase PBPRA3345 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 54309460 Common - putative citrate lyase, alpha subunit PBPRA2292 29 COG3051 CitF, Citrate lyase, alpha subunit Energy production and conversion 54308478 Common - hypothetical protein PBPRA1285 7 None None None 54309183 Common - Putative SanA protein PBPRA1998 46 COG2949 SanA, Uncharacterized membrane protein Function unknown 54309257 Common artP arginine transporter ATP-binding subunit PBPRA2073 249 COG4161 ArtP, ABC-type arginine transport system, ATPase component Amino acid transport and metabolism 54308834 Common - hypothetical transposase PBPRA1641 6 None None None 54309541 Common - putative transposase PBPRA2374 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309853 Common - hypothetical protein PBPRA2693 2 None None None 54307777 Common - putative sigma-54 dependent transcriptional regulator PBPRA0572 170 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54308586 Common - putative phosphate ABC transporter, permease protein PBPRA1393 234 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 54309932 Common - putative PTS system, cellobiose-specific IIAcomponent PBPRA2778 32 COG1447 CelC, Phosphotransferase system cellobiose-specific component IIA Carbohydrate transport and metabolism 54308682 Nonpathogen - hypothetical protein PBPRA1489 1 None None None 54309890 Common - putative Na+/H+ antiporter PBPRA2736 46 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 54307975 Common - inositol-5-monophosphate dehydrogenase PBPRA0780 236 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 54309580 Common - hypothetical protein PBPRA2414 6 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 54310051 Common - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component PBPRA2935 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 54308302 Common - hypothetical protein PBPRA1109 59 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 54309203 Common - hypothetical methyl-accepting chemotaxisprotein PBPRA2018 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309754 Common - putative nitroreductase PBPRA2593 79 COG0778 NfnB, Nitroreductase Energy production and conversion 54308346 Common - putative initiation factor IF-1 PBPRA1153 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 54307546 Common rplV 50S ribosomal protein L22 PBPRA0325 225 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 54308248 Common - hypothetical protein PBPRA1055 52 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 54310640 Nonpathogen - hypothetical protein PBPRA3602 1 None None None 54308945 Nonpathogen - hypothetical protein PBPRA1756 1 None None None 54308088 Common - hypothetical protein PBPRA0895 13 COG3018 COG3018, Uncharacterized protein conserved in bacteria Function unknown 54308222 Common - putative N-acetylglucosamine repressor PBPRA1029 169 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 54310553 Nonpathogen - hypothetical protein PBPRA3500 1 None None None 54308769 Common - hypothetical protein PBPRA1576 5 None None None 54307537 Common tuf elongation factor Tu PBPRA0316 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 54307935 Common - Putative acetoin utilization protein AcuB PBPRA0740 158 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 54308041 Nonpathogen - hypothetical protein PBPRA0846 1 None None None 54308747 Common - hypothetical protein PBPRA1554 47 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 54308810 Common - hypothetical flagellin PBPRA1617 2 None None None 54307643 Common - RNA polymerase sigma factor RpoD PBPRA0430 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 54309215 Common - putative periplasmic nitrate reductase PBPRA2030 184 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54310566 Common uvrD DNA-dependent helicase II PBPRA3513 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 54309035 Common - hypothetical protein PBPRA1849 6 None None None 54307302 Common - hypothetical protein PBPRA0065 131 COG1739 COG1739, Uncharacterized conserved protein Function unknown 54308174 Common - Hypothetical copper tolerance protein PBPRA0981 32 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 54309441 Common - putative oxidoreductase PBPRA2273 182 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 54309077 Common - putative ABC-type cobalt transport system, ATPase component PBPRA1891 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 54309204 Nonpathogen - hypothetical protein PBPRA2019 2 None None None 54310484 Common zntR zinc-responsive transcriptional regulator PBPRA3418 157 COG0789 SoxR, Predicted transcriptional regulators Transcription 54308857 Common - hypothetical thioesterase PBPRA1664 48 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 54309658 Common - Hypothetical membrane protein PBPRA2494 7 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 54308752 Common - hypothetical protein PBPRA1559 3 None None None 54308297 Common - short chain dehydrogenase PBPRA1104 182 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 54307413 Common - hypothetical protein PBPRA0192 5 None None None 54309403 Common - hypothetical regulatory protein PfoR PBPRA2231 17 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 54309165 Common - hypothetical protein PBPRA1980 4 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 54309057 Nonpathogen - hypothetical protein PBPRA1871 5 None None None 54309727 Common - Putative endonuclease III PBPRA2566 239 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 54309030 Common - hypothetical protein PBPRA1844 3 None None None 54308759 Common - putative iron(III) compound receptor PBPRA1566 117 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 54309225 Nonpathogen - hypothetical protein PBPRA2040 1 None None None 54310323 Common - putative ubiquinol-cytochrome c reductase,iron-sulfur subunit PBPRA3235 94 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 54310184 Common - pyridoxal phosphate biosynthetic protein PdxJ PBPRA3086 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 54310419 Common rpsF 30S ribosomal protein S6 PBPRA3339 194 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 54307882 Nonpathogen - hypothetical protein PBPRA0679 1 None None None 54309008 Common - hypothetical protein PBPRA1822 7 None None None 54310244 Common - hypothetical protein PBPRA3147 13 None None None 54309731 Common - hypothetical protein PBPRA2570 3 None None None 54308786 Common - hypothetical protein PBPRA1593 71 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 54309129 Common - putative oxidoreductase, Fe-S subunit PBPRA1943 197 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 54308731 Common - hypothetical protein PBPRA1538 49 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307858 Common - hypothetical Ccm2-related protein PBPRA0655 69 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 54309147 Common - hypothetical protein PBPRA1961 22 COG2926 COG2926, Uncharacterized protein conserved in bacteria Function unknown 54308318 Common moaC molybdenum cofactor biosynthesis protein C PBPRA1125 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 54308241 Common kgd alpha-ketoglutarate decarboxylase PBPRA1048 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 54308449 Common - hypothetical protein PBPRA1256 77 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 54309295 Common - hypohetical ABC transporter, permeaseprotein PBPRA2115 91 COG4135 COG4135, ABC-type uncharacterized transport system, permease component General function prediction only 54308540 Common - hypothetical protein PBPRA1347 3 None None None 54309314 Nonpathogen - hypothetical protein PBPRA2134 1 None None None 54310122 Common - hypothetical multidrug resistance protein PBPRA3006 199 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54309120 Common - putative transporter, BCCT family (BetT, Choline-glycine betaine transporter) PBPRA1934 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 54308736 Common - hypothetical protein PBPRA1543 26 COG0456 RimI, Acetyltransferases General function prediction only 54308896 Common - Putative ATP-dependent helicase PBPRA1707 128 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 54310611 Common - Putative Sua5/YciO/YrdC family protein PBPRA3573 241 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 54308085 Common - hypothetical protein PBPRA0891 7 COG3597 COG3597, Uncharacterized protein/domain associated with GTPases Function unknown 54307297 Common - hypothetical protein PBPRA0060 88 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 54309623 Common - ribonucleotide-diphosphate reductase subunit alpha PBPRA2459 204 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 54309802 Common - putative glucose-1-phosphate uridylyltransferase PBPRA2642 224 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 54309961 Common - putative formate transporter 1 PBPRA2807 101 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 54309485 Common - hypothetical transporter, AcrB/D/F family PBPRA2318 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 161936291 Common - putative deoxyribonucleotide triphosphate pyrophosphatase PBPRA3148 237 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 54310275 Common - hypothetical protein PBPRA3187 22 COG3112 COG3112, Uncharacterized protein conserved in bacteria Function unknown 54310073 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase PBPRA2957 187 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 54307322 Common - putative peptide ABC transporter PBPRA0100 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54308144 Common - cytochrome c-type biogenesis protein CcmE PBPRA0951 94 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 54309106 Common - hypothetical protein PBPRA1920 2 None None None 54307425 Common rpmG 50S ribosomal protein L33 PBPRA0204 131 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 54310311 Common mraW S-adenosyl-methyltransferase MraW PBPRA3223 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 54310040 Common fadE acyl-CoA dehydrogenase PBPRA2915 146 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 54308408 Common - hypothetical MATE efflux family protein PBPRA1215 164 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 54309611 Common - orotidine 5'-phosphate decarboxylase PBPRA2446 168 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 54307365 Common - hypothetical protein PBPRA0144 17 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 54309817 Common - putative UDP-glucose dehydrogenase PBPRA2657 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 54308487 Common - hypothetical Fe-S oxidoreductase PBPRA1294 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 54308407 Common - putative inosine monophosphate dehydrogenase-related protein PBPRA1214 92 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 54309070 Nonpathogen - hypothetical protein PBPRA1884 1 None None None 54307484 Common metF 5,10-methylenetetrahydrofolate reductase PBPRA0263 149 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 54307899 Common - putative heat shock protein GrpE PBPRA0696 231 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 54307703 Common - hypothetical protein PBPRA0490 23 COG1714 COG1714, Predicted membrane protein/domain Function unknown 54309247 Nonpathogen - hypothetical protein PBPRA2063 1 None None None 54309713 Common - putative tolR membrane protein PBPRA2552 133 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 54307718 Common - putative transposase and inactivatedderivatives PBPRA0513 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309352 Common hutH histidine ammonia-lyase PBPRA2173 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 54307770 Common - flavodoxin FldB PBPRA0565 67 COG0716 FldA, Flavodoxins Energy production and conversion 54309362 Common - hypothetical protein PBPRA2184 2 None None None 54309913 Common - putative iron-containing alcohol dehydrogenase PBPRA2759 165 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 54307596 Common - hypothetical phage shock protein E PBPRA0382 75 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 54308069 Common gltX glutamyl-tRNA synthetase PBPRA0874 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 54307613 Common - putative Dihydrofolate reductase PBPRA0399 146 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 54307479 Common rpmE 50S ribosomal protein L31 PBPRA0258 181 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 161936315 Common - leucine-responsive transcriptional regulator PBPRA1161 155 COG1522 Lrp, Transcriptional regulators Transcription 54308768 Common - PTS system, fructose-specific IIBC component PBPRA1575 69 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 54307842 Common - hypothetical protein PBPRA0639 16 None None None 54308534 Common - Hypothetical transposase PBPRA1341 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307317 Common - hypothetical transcriptional regulator, TetR family PBPRA0090 85 COG1309 AcrR, Transcriptional regulator Transcription 54309551 Common lpxK tetraacyldisaccharide 4'-kinase PBPRA2384 130 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 54309997 Common - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase PBPRA2848 190 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 54310439 Common - phosphatidylserine decarboxylase PBPRA3372 96 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 54310584 Common - hypothetical HemY protein PBPRA3531 50 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 54309908 Common - putative tricarboxylic transport TctC PBPRA2754 76 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 54307850 Common - hypothetical protein PBPRA0647 3 None None None 54308706 Common - putative manganese-dependent inorganic pyrophosphatase PBPRA1513 60 COG1227 PPX1, Inorganic pyrophosphatase/exopolyphosphatase Energy production and conversion 54308115 Common fliE flagellar hook-basal body protein FliE PBPRA0922 79 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 54307310 Common - Transposase and inactivated derivatives PBPRA0083 88 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310153 Common - hypothetical protein PBPRA3043 83 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 54310563 Common - hypothetical transcriptional regulator, AraC/XylS family PBPRA3510 133 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54308238 Common - Putative succinate dehydrogenase, hydrophobic membrane anchor protein PBPRA1045 35 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 54308513 Common - hypothetical protein PBPRA1320 4 None None None 54308025 Common - hypothetical protein PBPRA0830 25 COG2991 COG2991, Uncharacterized protein conserved in bacteria Function unknown 54308630 Common - putative transposase PBPRA1437 6 None None None 54308987 Common - hypothetical protein PBPRA1800 17 COG1479 COG1479, Uncharacterized conserved protein Function unknown 54307948 Common hscB co-chaperone HscB PBPRA0753 55 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 54307345 Common - putative MadN protein PBPRA0124 24 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 54308101 Common flgI flagellar basal body P-ring protein PBPRA0908 104 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 54307352 Common - hypothetical transcriptional regulator, TetR family PBPRA0131 17 COG1309 AcrR, Transcriptional regulator Transcription 54310110 Common mltA murein transglycosylase A PBPRA2994 92 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 54310078 Common - 1-deoxy-D-xylulose 5-phosphate reductoisomerase PBPRA2962 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 54310440 Common - putative transporter PBPRA3373 105 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 54307921 Common - polyphosphate kinase PBPRA0726 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 54307884 Nonpathogen - hypothetical protein PBPRA0681 1 None None None 54308049 Common - putative periplasmic nitrate reductase,cytochrome c-type protein PBPRA0854 41 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 54307287 Common - Hypothetical stbA Plasmid stable inheritance protein PBPRA0050 13 None None None 54307707 Common - phosphotransferase system cellobiose-specific component IIB PBPRA0495 2 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 54307874 Common - hypothetical protein PBPRA0671 47 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 54307530 Common - hypothetical protein PBPRA0309 48 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 54310471 Common - putative acetyl-CoA carboxylase, biotin carboxyl carrier protein PBPRA3405 186 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 54310248 Common - glutaminase PBPRA3151 72 COG2066 GlsA, Glutaminase Amino acid transport and metabolism 54308273 Common - hypothetical protein PBPRA1080 35 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 54310176 Common - hypothetical protein PBPRA3078 64 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 54308502 Nonpathogen - hypothetical protein PBPRA1309 1 None None None 54307444 Common - putative NlpD-related protein family M37 unassigned peptidase (NlpD protein) PBPRA0223 177 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 54309626 Common - hypothetical protein PBPRA2462 46 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 54308580 Common - hypothetical protein PBPRA1387 11 None None None 54308466 Common - putative translation initiationinhibitor, yjgF family PBPRA1273 148 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 54309708 Common - quinolinate synthetase PBPRA2547 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 54309836 Common - putative nucleotide sugar epimerase PBPRA2676 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 161936303 Common uhpT sugar phosphate antiporter PBPRA2348 49 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 54310417 Common - putative ribosomal protein S18 PBPRA3337 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 54307527 Common - putative slyX protein (slyX) PBPRA0306 32 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 54308556 Common - putative transposase PBPRA1363 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307394 Common - hypothetical cytochrome c oxidase assembly protein PBPRA0173 64 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 54309795 Common - putative bacterial nucleoid DNA-binding protein PBPRA2634 211 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 54307953 Common - aminopeptidase B PBPRA0758 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 54309428 Common - ureidoglycolate hydrolase PBPRA2260 35 COG3194 DAL3, Ureidoglycolate hydrolase Nucleotide transport and metabolism 54308111 Common - putative polar flagellar protein FlaK PBPRA0918 170 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54310521 Common - soluble pyridine nucleotide transhydrogenase PBPRA3468 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 54309760 Common - hypothetical protein PBPRA2599 7 None None None 54308976 Common - Hypothetical acetyltransferase PBPRA1787 44 COG3153 COG3153, Predicted acetyltransferase General function prediction only 54309216 Common - hypothetical protein PBPRA2031 9 COG4519 COG4519, Uncharacterized protein conserved in bacteria Function unknown 161936298 Common - putative choline-glycine betaine transporter PBPRA2735 95 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 54308321 Common - Hypothetical porin PBPRA1128 29 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 54307270 Common - Hypothetical flagellar hook protein FlgE PBPRA0033 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 54310456 Common - hypothetical protein PBPRA3389 182 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 54307928 Common - hypothetical protein PBPRA0733 9 None None None 54307955 Common - hypothetical protein PBPRA0760 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 54310590 Common - hypothetical ferredoxin PBPRA3537 2 None None None 54307739 Common - hypothetical DedA family protein PBPRA0534 136 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 54308264 Common - hypothetical protein PBPRA1071 192 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 54307279 Common - hypothetical protein PBPRA0042 99 COG1345 FliD, Flagellar capping protein Cell motility and secretion 54308398 Common - hypothetical protein PBPRA1205 8 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 54309947 Common - putative ABC transporter substrate-binding protein PBPRA2793 59 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 54307765 Common - putative sodium/alanine symporter PBPRA0560 115 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 54307262 Common - Putative FliI, flagellum-specific ATP synthase PBPRA0025 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 54309206 Common - hypothetical protein PBPRA2021 6 COG3274 COG3274, Uncharacterized protein conserved in bacteria Function unknown 54307610 Common - hypothetical protein PBPRA0396 29 COG2510 COG2510, Predicted membrane protein Function unknown 54309572 Common - putative AcrB, Cation/multidrug efflux pump PBPRA2406 178 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 54309940 Common - putative hydrolase PBPRA2786 35 COG1735 Php, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 54309952 Common - acetate kinase PBPRA2798 162 COG0282 ackA, Acetate kinase Energy production and conversion 54309544 Common - condesin subunit E PBPRA2377 20 COG3095 MukE, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 54310058 Common metQ DL-methionine transporter substrate-binding subunit PBPRA2942 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 54308220 Common asnB asparagine synthetase B PBPRA1027 152 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 54308426 Common - hypothetical dipeptidase PBPRA1233 25 COG4690 PepD, Dipeptidase Amino acid transport and metabolism 54310544 Common - putative virulence regulator BipA PBPRA3491 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 54310007 Common lnt apolipoprotein N-acyltransferase PBPRA2882 166 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 54307631 Common - isopropylmalate isomerase large subunit PBPRA0417 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 54308954 Common - hypothetical protein PBPRA1765 8 None None None 54309911 Common - hypothetical protein PBPRA2757 6 None None None 54309507 Common - hypothetical transport protein PBPRA2340 50 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 54309514 Common - putative response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family) PBPRA2347 192 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 54310100 Common - hypothetical GGDEF domain family protein PBPRA2984 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 54309808 Common - amidophosphoribosyltransferase PBPRA2648 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 54309091 Common - hypothetical metal-binding protein PBPRA1905 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 54308227 Common - glutaminyl-tRNA synthetase PBPRA1034 241 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 54308658 Common - steroid dehydrogenase PBPRA1465 202 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54310144 Common - hypothetical protein PBPRA3034 130 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 54309892 Common - glutaredoxin 2 PBPRA2738 18 COG2999 GrxB, Glutaredoxin 2 Posttranslational modification, protein turnover, chaperones 54310316 Common - hypothetical protein PBPRA3228 83 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 54308587 Common - putative phosphate ABC transporter, periplasmicphosphate-binding protein PBPRA1394 185 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 54308529 Common - putative integrase PBPRA1336 223 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 54308626 Common - Putative tyrosine-specific transport protein PBPRA1433 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 54308816 Common - hypothetical protein PBPRA1623 5 None None None 54308287 Common - putative signal transduction protein containing EAL and modified HD-GYP domains PBPRA1094 42 COG3434 COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains Signal transduction mechanisms 54308996 Common - hypothetical protein PBPRA1809 11 None None None 54309648 Common - putative metal-dependent phosphoesterase PBPRA2484 133 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 54308210 Common - DNA polymerase III subunits gamma and tau PBPRA1017 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 54308968 Common - hypothetical protein PBPRA1779 5 None None None 54308217 Common adk adenylate kinase PBPRA1024 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 54309979 Common - hypothetical protein PBPRA2825 54 COG3735 COG3735, Uncharacterized protein conserved in bacteria Function unknown 54307591 Common - hypothetical protein PBPRA0377 15 None None None 54309869 Common - putative NeuA PBPRA2709 98 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 54308807 Common - hypothetical protein PBPRA1614 104 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 54310406 Common - putative zinc uptake regulation protein PBPRA3326 165 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 54310019 Common - hypothetical protein PBPRA2894 51 COG2921 COG2921, Uncharacterized conserved protein Function unknown 54309811 Common - putative folylpolyglutamate synthase/dihydrofolate synthase PBPRA2651 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 54307339 Common ubiB putative ubiquinone biosynthesis protein UbiB PBPRA0118 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 54310625 Common - hypothetical protein PBPRA3587 18 COG3084 COG3084, Uncharacterized protein conserved in bacteria Function unknown 54308517 Common - hypothetical protein PBPRA1324 3 None None None 54309456 Common - hypothetical ToxR-regulated lipoprotein PBPRA2288 6 None None None 54310545 Common glnA glutamine synthetase PBPRA3492 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 54308890 Common - hypothetical protein PBPRA1701 11 None None None 54308099 Common flgG flagellar basal body rod protein FlgG PBPRA0906 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 54310432 Common mutL DNA mismatch repair protein PBPRA3352 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 54310068 Common - acetyl-CoA carboxylase carboxyltransferase subunit alpha PBPRA2952 190 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 54310049 Common - hypothetical protein PBPRA2924 10 None None None 54309425 Nonpathogen - hypothetical protein PBPRA2257 1 None None None 54308362 Common - hypothetical Mrp protein (ATPase involved in chromosome partitioning) PBPRA1169 234 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54310349 Common - peptidase PmbA PBPRA3261 159 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 54310035 Common - phosphoribosylaminoimidazole synthetase PBPRA2910 232 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 54307722 Common - putative N,N-diacetylchitobiose phosphorylase PBPRA0517 46 COG3459 COG3459, Cellobiose phosphorylase Carbohydrate transport and metabolism 54309127 Common - hypothetical xanthine dehydrogenase PBPRA1941 112 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 54307811 Common - putative phosphoglucomutase/phosphomannomutasefamily protein MrsA PBPRA0606 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 54309155 Nonpathogen - hypothetical protein PBPRA1969 1 None None None 54309283 Common - hypothetical TonB protein PBPRA2103 46 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 54307743 Common - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase PBPRA0538 94 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 54308412 Common - hypothetical protein PBPRA1219 11 None None None 54310224 Common - putative Lysine efflux permease PBPRA3127 83 COG1279 COG1279, Lysine efflux permease General function prediction only 54310238 Common - putative twitching motility protein PilT PBPRA3141 214 COG5008 PilU, Tfp pilus assembly protein, ATPase PilU Cell motility and secretion / Intracellular trafficking and secretion 54308510 Common - hypothetical protein PBPRA1317 9 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 54309599 Common - hypothetical transcriptional regulator TyrR PBPRA2434 167 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 54307571 Common - hypothetical protein PBPRA0350 124 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 161936317 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase PBPRA1147 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 54309273 Common - Putative sodium/glutamate symporter PBPRA2089 51 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 54308610 Nonpathogen - hypothetical protein PBPRA1417 1 None None None 54309597 Common - Hypothetical ribosomal-protein-alanine acetyltransferase PBPRA2432 113 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 54307791 Common - putative Transcription activator HlyU PBPRA0586 147 COG0640 ArsR, Predicted transcriptional regulators Transcription 54307496 Common - hypothetical fimbrial assembly protein PilM PBPRA0275 68 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 54309048 Common - putative formate dehydrogenase largesubunit PBPRA1862 190 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54310012 Common holA DNA polymerase III subunit delta PBPRA2887 67 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 54307400 Common - putative bioH protein PBPRA0179 165 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54309631 Common - hypothetical protein PBPRA2467 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 54308381 Common - hypothetical hydrolase, haloacid dehalogenase-likefamily PBPRA1188 152 COG0546 Gph, Predicted phosphatases General function prediction only 54309608 Common - putative peptide ABC transporter, permease protein PBPRA2443 217 COG4171 SapC, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 54307841 Common - hypothetical ToxR-activated protein TagE PBPRA0638 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 54308411 Common - putative chemotaxis protein CheY PBPRA1218 31 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54310250 Nonpathogen - hypothetical protein PBPRA3153 1 None None None 54310585 Common - hypothetical protein PBPRA3532 4 None None None 54307648 Common - hypothetical protein PBPRA0435 170 COG0344 COG0344, Predicted membrane protein Function unknown 54309494 Common - putative biotin synthesis protein BioC PBPRA2327 217 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 54309924 Common - hypothetical phosphoglycerate transport regulatory protein PgtB PBPRA2770 212 COG4192 COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system Signal transduction mechanisms 54307315 Common - hypothetical membrane-fusion protein PBPRA0088 151 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54307584 Common - hypothetical protein PBPRA0370 8 None None None 54310264 Common panC pantoate--beta-alanine ligase PBPRA3176 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 54307568 Common - hypothetical glycosyltransferase PBPRA0347 119 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54309302 Common - putative cyclohexadienyl dehydratase precursor signal peptide protein PBPRA2122 117 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 54307848 Common - putative response regulator PBPRA0645 221 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 54308491 Common - hypothetical protein PBPRA1298 56 COG1432 COG1432, Uncharacterized conserved protein Function unknown 54307253 Common fliP flagellar biosynthesis protein FliP PBPRA0016 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 161936323 Common flhF flagellar biosynthesis regulator FlhF PBPRA0937 239 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 54307406 Common envZ osmolarity sensor protein PBPRA0185 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54309064 Common - putative lipase/esterase protein PBPRA1878 123 COG0657 Aes, Esterase/lipase Lipid metabolism 54307919 Common - putative exopolyphosphatase PBPRA0724 143 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 54309287 Common - putative hemin ABC transporter, permease protein PBPRA2107 190 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 54310091 Common - hypothetical protein PBPRA2975 10 None None None 54310530 Common - putative general secretion pathway protein H PBPRA3477 12 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 54308708 Common - hypothetical protein PBPRA1515 6 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 54309666 Common - hypothetical protein PBPRA2502 20 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 54307863 Common - hypothetical protein PBPRA0660 49 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 54308578 Common - hypothetical protein PBPRA1385 8 COG3675 COG3675, Predicted lipase Lipid metabolism 54308121 Common - Hypothetical polar flagellar hook-length control protein FliK PBPRA0928 48 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 54310420 Common - 23S rRNA (guanosine-2'-O-)-methyltransferase PBPRA3340 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 54310622 Common - Putative Hemolysin PBPRA3584 107 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 54310149 Common trmD tRNA (guanine-N(1)-)-methyltransferase PBPRA3039 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 54307775 Common lysS lysyl-tRNA synthetase PBPRA0570 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 54310029 Common - putative Trp repressor-binding protein PBPRA2904 117 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 54309758 Common - hypothetical glutathione S-transferase PBPRA2597 82 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 54308253 Common - hypothetical protein PBPRA1060 5 None None None 54309935 Common - hypothetical protein PBPRA2781 19 COG3979 COG3979, Uncharacterized protein contain chitin-binding domain type 3 General function prediction only 54310061 Common - hypothetical protein PBPRA2945 35 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 54308498 Common - hypothetical helix-turn-helix XRE-family like proteins. PBPRA1305 4 COG1476 COG1476, Predicted transcriptional regulators Transcription 54309603 Common pspB phage shock protein B PBPRA2438 23 None None None 54309119 Common - hypothetical protein PBPRA1933 29 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 54309776 Common - putative proteinase inhibitor PBPRA2615 35 None None None 54307600 Common - aromatic acid decarboxylase PBPRA0386 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 54307419 Common - putative ribonuclease PH PBPRA0198 199 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 54310388 Common - adenylylsulfate kinase PBPRA3308 144 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 54308244 Common - succinyl-CoA synthetase subunit alpha PBPRA1051 216 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 54307562 Common rpmJ 50S ribosomal protein L36 PBPRA0341 137 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 54310414 Common - hypothetical protein PBPRA3334 8 None None None 54309193 Common - putative transcriptional regulator, LysR family PBPRA2008 99 COG0583 LysR, Transcriptional regulator Transcription 54308729 Common - isoaspartyl dipeptidase PBPRA1536 36 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 54310337 Common - putative Ca2+/Na+ antiporter PBPRA3249 117 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 54308676 Nonpathogen - hypothetical protein PBPRA1483 1 None None None 54308665 Common - hypothetical protein PBPRA1472 110 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 54309370 Common - hypothetical acylphosphatase PBPRA2192 121 COG1254 AcyP, Acylphosphatases Energy production and conversion 54309829 Common - hypothetical DnaJ domain protein PBPRA2669 10 None None None 54308804 Common - hypothetical protein PBPRA1611 3 None None None 54309610 Common - putative ABC-type antimicrobial peptide transport system, ATPase component PBPRA2445 249 COG4167 SapF, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 54307729 Common - putative peptide ABC transporter, permease protein PBPRA0524 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54309700 Common - hypothetical protein PBPRA2538 32 COG4637 COG4637, Predicted ATPase General function prediction only 54309557 Common - putative ABC transporter integral membrane subunit PBPRA2390 190 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 54309845 Common - putative glycerol-3-phosphatecytidyltransferase PBPRA2685 85 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 54310304 Common - putative cell division protein FtsW PBPRA3216 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 54310119 Common - putative DNA damage-inducible gene in SOSregulon, dependent on cyclic AMP and H-NS PBPRA3003 17 COG3141 COG3141, Uncharacterized protein conserved in bacteria Function unknown 54308135 Common - Putative chemotaxis protein CheA PBPRA0942 151 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 54310353 Common - hypothetical membrane protein PBPRA3265 55 COG3164 COG3164, Predicted membrane protein Function unknown 54310510 Common pssA phosphatidylserine synthase PBPRA3448 31 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 54310000 Common - translation-associated GTPase PBPRA2851 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 54308922 Common - hypothetical protein PBPRA1733 183 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54308775 Nonpathogen - hypothetical protein PBPRA1582 1 None None None 54309710 Common - putative peptidoglycan-associated lipoprotein PBPRA2549 150 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54309108 Common - putative solute/DNA competence effector PBPRA1922 36 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 54308476 Common - hypothetical allophanate hydrolase subunit 2 PBPRA1283 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 54310196 Nonpathogen - hypothetical cell shape-determining protein PBPRA3098 1 None None None 161936295 Common tsf elongation factor Ts PBPRA2967 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 54309388 Common - hypothetical protein PBPRA2210 156 COG0640 ArsR, Predicted transcriptional regulators Transcription 54310202 Common - hypothetical protein PBPRA3104 2 None None None 54310331 Common - putative BolA/YrbA family protein, transcriptional regulator PBPRA3243 84 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 54310189 Common - GTP-binding protein LepA PBPRA3091 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 54307521 Common - hypothetical protein PBPRA0300 6 COG5589 COG5589, Uncharacterized conserved protein Function unknown 54309334 Common ihfA integration host factor subunit alpha PBPRA2154 209 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 54308184 Common - hypothetical protein PBPRA0991 121 COG4145 PanF, Na+/panthothenate symporter Coenzyme metabolism 54308678 Common - 16 kDa heat shock protein A PBPRA1485 64 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 54309691 Common - hypothetical uncharacterized paraquat-inducible protein B PBPRA2527 25 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 54309561 Common - Hypothetical ribosomal-protein-serine acetyltransferase PBPRA2394 72 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 54308457 Common - Hypothetical cytochrome c-type biogenesis protein NrfF PBPRA1264 91 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 54309013 Common - hypothetical protein PBPRA1827 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54308825 Common - hypothetical protein PBPRA1632 2 None None None 54309621 Common - 3-demethylubiquinone-9 3-methyltransferase PBPRA2457 159 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 54310617 Common def peptide deformylase PBPRA3579 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 54307988 Common - Putative nitrogen regulatory protein P-II PBPRA0793 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 54309181 Nonpathogen - hypothetical protein PBPRA1996 1 None None None 54310277 Common - putative permease PBPRA3189 78 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 54308440 Common - methylcitrate synthase PBPRA1247 194 COG0372 GltA, Citrate synthase Energy production and conversion 54308044 Common - putative nitrate/nitrite response regulator protein PBPRA0849 220 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 54309356 Common - hypothetical protein PBPRA2177 203 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54309085 Nonpathogen - hypothetical protein PBPRA1899 1 None None None 54309083 Common - hypothetical protein PBPRA1897 35 COG3367 COG3367, Uncharacterized conserved protein Function unknown 54308224 Common nagB glucosamine-6-phosphate deaminase PBPRA1031 81 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 54310359 Common - hypothetical MSHA biogenesis protein MshQ PBPRA3271 12 None None None 54310284 Common aceE pyruvate dehydrogenase subunit E1 PBPRA3196 161 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 54307690 Common - arginine deiminase PBPRA0477 55 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 54310391 Common - sulfate adenylyltransferase subunit 2 PBPRA3311 138 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 54307544 Common rplB 50S ribosomal protein L2 PBPRA0323 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 54310325 Common rplM 50S ribosomal protein L13 PBPRA3237 235 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 161936283 Common groES co-chaperonin GroES PBPRA3388 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 54310481 Nonpathogen - hypothetical protein PBPRA3415 1 None None None 54307676 Common - putative D-xylose transport ATP-binding protein xylG PBPRA0463 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 54310192 Common - putative sigma-E factor negative regulatory protein RseA PBPRA3094 22 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 54310270 Common - putative iron(III) ABC transporter, ATP-binding protein PBPRA3182 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 54309259 Common - arginine transporter permease subunit ArtQ PBPRA2075 187 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 54309111 Common - hypothetical Uncharacterized paraquat-inducible protein A PBPRA1925 54 COG2995 PqiA, Uncharacterized paraquat-inducible protein A Function unknown 54310423 Common - nitric oxide dioxygenase PBPRA3343 134 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 54307249 Common - Putative flagellar biosynthesis protein PBPRA0012 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 54308483 Common - hypothetical protein PBPRA1290 6 None None None 54309851 Common - hypothetical polysaccharide synthesis-related protein PBPRA2691 13 None None None 54307804 Common - D-alanyl-D-alanine carboxypeptidase/endopeptidase PBPRA0599 107 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 54308836 Common - hypothetical protein PBPRA1643 14 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 54307458 Common - hypothetical protein PBPRA0237 3 None None None 54308680 Common - hypothetical protein PBPRA1487 4 None None None 54308072 Nonpathogen - hypothetical protein PBPRA0878 3 None None None 54308153 Common - RNA polymerase sigma factor PBPRA0960 144 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 54309868 Common - hypothetical FlmD PBPRA2708 33 COG3980 spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase Cell envelope biogenesis, outer membrane 54310233 Common - putative extracellular deoxyribonucleaseprecursor PBPRA3136 33 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 54307481 Common - transcriptional repressor protein MetJ PBPRA0260 23 COG3060 MetJ, Transcriptional regulator of met regulon Transcription / Amino acid transport and metabolism 54310151 Common - putative ribosomal protein S16 PBPRA3041 205 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 54308300 Common - hypothetical protein PBPRA1107 19 None None None 54309693 Common - hypothetical membrane protein PBPRA2531 213 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 54307611 Common obgE GTPase ObgE PBPRA0397 249 COG0536 Obg, Predicted GTPase General function prediction only 54308532 Common - hypothetical protein PBPRA1339 4 None None None 54308246 Common - putative ABC-type Mn2+/Zn2+ transport system, permease component PBPRA1053 194 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 54309582 Common - hypothetical protein PBPRA2416 3 None None None 54308745 Common - hypothetical protein PBPRA1552 183 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 54308493 Common - hypothetical protein PBPRA1300 5 None None None 54308718 Nonpathogen - hypothetical protein PBPRA1525 3 None None None 54307984 Common - hypothetical transposase PBPRA0789 27 None None None 54309875 Common - putative PTS system, fructose-specific IIABC component PBPRA2715 122 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 54307816 Common - putative ribosome-binding factor A PBPRA0613 94 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 54310398 Common - hypothetical protein PBPRA3318 8 None None None 54310345 Common - putative nitrogen regulatory IIA protein PtsN PBPRA3257 136 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 54308819 Common - putative transposase PBPRA1626 29 COG5433 COG5433, Transposase DNA replication, recombination, and repair 161936334 Common djlA Dna-J like membrane chaperone protein PBPRA0406 95 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 54308196 Common - putative cation efflux system transmembrane protein PBPRA1003 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 54308910 Common - cellulose synthase regulator protein PBPRA1721 20 None None None 54307870 Common - hypothetical protein PBPRA0667 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 54309736 Common - putative antioxidant, AhpC/Tsa family PBPRA2575 227 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 54309828 Common - hypothetical protein PBPRA2668 10 COG4715 COG4715, Uncharacterized conserved protein Function unknown 54308740 Nonpathogen - hypothetical protein PBPRA1547 1 None None None 54309767 Common - hypothetical protein PBPRA2606 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 54308703 Common - putative sodium-dependent transporter PBPRA1510 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 54310288 Common - hypothetical pilin PilA PBPRA3200 84 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 54309238 Common - putative transposase PBPRA2054 7 None None None 54310352 Common - putative carbon-nitrogen hydrolase PBPRA3264 202 COG0388 COG0388, Predicted amidohydrolase General function prediction only 54310252 Common - hypothetical protein PBPRA3155 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 54307607 Common - putative octaprenyl-diphosphate synthase PBPRA0393 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 54307755 Common - hypothetical protein PBPRA0550 3 None None None 54310098 Common queF 7-cyano-7-deazaguanine reductase PBPRA2982 94 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 54308328 Common - putative oligopeptide ABC transporter,ATP-binding protein PBPRA1135 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 54310618 Common fmt methionyl-tRNA formyltransferase PBPRA3580 220 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 54309167 Common - hypothetical protein PBPRA1982 6 None None None 54310486 Common - phosphoribosylamine--glycine ligase PBPRA3420 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 54309568 Common - hypothetical protein PBPRA2402 26 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 54310109 Common - putative HesA/MoeB/ThiF family protein PBPRA2993 220 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 54310490 Common - putative branched chain amino acid transporter PBPRA3424 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 54310429 Common - putative GTPase HflX PBPRA3349 232 COG2262 HflX, GTPases General function prediction only 54308470 Nonpathogen - hypothetical protein PBPRA1277 1 None None None 54308965 Common - hypothetical protein PBPRA1776 3 None None None 54309592 Common - hypothetical carboxypeptidase G2 PBPRA2427 161 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 54310266 Common - hypothetical ABC transporterATP-binding protein yadG PBPRA3178 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 54308008 Common - putative outer membrane protein ompK precursor PBPRA0813 21 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 161936329 Common - autonomous glycyl radical cofactor GrcA PBPRA0556 51 COG3445 COG3445, Acid-induced glycyl radical enzyme General function prediction only 54309633 Common - hypothetical protein PBPRA2469 14 None None None 54307839 Common - hypothetical protein PBPRA0636 7 None None None 54308877 Common - putative transporter PBPRA1688 87 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 54307630 Common leuD isopropylmalate isomerase small subunit PBPRA0416 209 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 54309673 Nonpathogen - hypothetical protein PBPRA2509 2 None None None 54307996 Common nusB transcription antitermination protein NusB PBPRA0801 183 COG0781 NusB, Transcription termination factor Transcription 54307371 Common - hypothetical protein PBPRA0150 152 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 54309872 Common - hypothetical teichoic acid biosynthesis protein F PBPRA2712 34 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 54309436 Common - hypothetical transcriptional regulator PBPRA2268 111 COG1309 AcrR, Transcriptional regulator Transcription 54308334 Common - hypothetical protein PBPRA1141 17 None None None 54310047 Common - hypothetical protein PBPRA2922 3 None None None 54307529 Common - putative FKBP-type peptidyl-prolyl cis-trans isomerase 1 PBPRA0308 141 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 54307380 Common - putative glycerol-3-phosphate repressor protein PBPRA0159 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 54308437 Common - hypothetical protein PBPRA1244 111 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 54309575 Common - Putative fumarate hydratase, class I PBPRA2409 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 54307724 Common - putative N-acetylglucosamine kinase PBPRA0519 48 COG2971 COG2971, Predicted N-acetylglucosamine kinase Carbohydrate transport and metabolism 54308826 Common - hypothetical protein PBPRA1633 179 COG0073 ARC1, EMAP domain General function prediction only 54309459 Common - hypothetical citX protein; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase PBPRA2291 24 COG3697 CitX, Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) Coenzyme metabolism / Lipid metabolism 54307992 Common - Putative pyrimidine deaminase/pyrimidine reductase PBPRA0797 222 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 54310652 Common gidB glucose-inhibited division protein B PBPRA3614 200 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 54310130 Common - hypothetical protein PBPRA3020 182 COG1496 COG1496, Uncharacterized conserved protein Function unknown 54309687 Common - putative NAD(P)H-nitrite reductase, large subunit PBPRA2523 206 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 54308262 Common - hypothetical protein PBPRA1069 3 None None None 54309227 Common - hypothetical transposase PBPRA2042 66 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308842 Common - hypothetical protein PBPRA1649 5 None None None 54309393 Common - hypothetical protein PBPRA2215 28 None None None 161936277 Common - dihydroxy-acid dehydratase PBPRA3595 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 54310515 Common - glutamate racemase PBPRA3462 190 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 54307937 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase PBPRA0742 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 54310547 Common glnL nitrogen regulation protein NR(II) PBPRA3494 214 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 54308142 Common - putative heme exporter protein B PBPRA0949 85 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 54309995 Common hemA glutamyl-tRNA reductase PBPRA2846 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 54307377 Common glpE thiosulfate sulfurtransferase PBPRA0156 111 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 54309703 Common - hypothetical protein PBPRA2541 50 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 54309641 Common - DNA topoisomerase I PBPRA2477 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 54307751 Nonpathogen - hypothetical protein PBPRA0546 1 None None None 54310075 Common - putative outer membrane protein OmpH PBPRA2959 52 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 54310166 Common recA recombinase A PBPRA3068 221 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 54307896 Common - hypothetical small protein A PBPRA0693 62 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 161936321 Common gltA type II citrate synthase PBPRA1043 194 COG0372 GltA, Citrate synthase Energy production and conversion 54308320 Common - putative molybdenum cofactor biosynthesisprotein E PBPRA1127 161 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 54309323 Common - hypothetical protein PBPRA2143 28 None None None 54308608 Common - hypothetical protein PBPRA1415 53 COG3152 COG3152, Predicted membrane protein Function unknown 54308161 Common - queuosine biosynthesis protein QueC PBPRA0968 176 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 54307466 Common - hypothetical transposase PBPRA0245 6 None None None 54307363 Common - putative efflux pump component MtrF PBPRA0142 40 COG2978 AbgT, Putative p-aminobenzoyl-glutamate transporter Coenzyme metabolism 54308485 Common - putative alpha-amylase PBPRA1292 41 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 54308405 Common - putative response regulator PBPRA1212 218 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 54308601 Common - hypothetical protein PBPRA1408 84 COG1556 COG1556, Uncharacterized conserved protein Function unknown 54309468 Common - putative sensor kinase citA PBPRA2300 196 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 54309006 Common - hypothetical protein PBPRA1820 10 None None None 54308716 Common - hypothetical protein PBPRA1523 163 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 54307450 Common - putative rRNA methylase, SpoU family PBPRA0229 162 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 161936286 Common - transcriptional repressor NsrR PBPRA3342 142 COG1959 COG1959, Predicted transcriptional regulator Transcription 54310520 Common - DNA-binding transcriptional repressor FabR PBPRA3467 66 COG1309 AcrR, Transcriptional regulator Transcription 54310378 Common - hypothetical protein PBPRA3291 11 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 54307881 Common - hypothetical nucleotidyltransferase PBPRA0678 71 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 54308380 Common - putative 23S rRNA ribosomal pseudouridinesynthase PBPRA1187 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 54309656 Common - putative proton/glutamate symporter PBPRA2492 165 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 54309986 Common - putative Na+/H+ antiporter PBPRA2837 75 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 54308941 Common - hypothetical protein PBPRA1752 37 COG4103 COG4103, Uncharacterized protein conserved in bacteria Function unknown 54310582 Common - hypothetical uroporphyrinogen III synthase PBPRA3529 65 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 54309188 Common - hypothetical Methyl-accepting chemotaxis protein PBPRA2003 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54307699 Common - putative permease PBPRA0486 107 COG0795 COG0795, Predicted permeases General function prediction only 54308766 Common - fructose-specific PTS IIA/HPr components PBPRA1573 112 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 54308374 Common cobS cobalamin synthase PBPRA1181 133 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 54310629 Common - hypothetical protein PBPRA3591 69 COG1683 COG1683, Uncharacterized conserved protein Function unknown 54308628 Common - hypothetical protein PBPRA1435 5 None None None 54307320 Common - putative peptide ABC transporter, ATP-binding protein PBPRA0098 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 54309715 Common - hypothetical protein PBPRA2554 137 COG0824 FcbC, Predicted thioesterase General function prediction only 54307689 Common - carbamate kinase PBPRA0476 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 54307852 Common - hypothetical protein PBPRA0649 51 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 54310575 Common dapF diaminopimelate epimerase PBPRA3522 201 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 54309820 Nonpathogen - hypothetical protein PBPRA2660 1 None None None 54308914 Common anmK anhydro-N-acetylmuramic acid kinase PBPRA1725 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 54309055 Common - hypothetical protein PBPRA1869 53 COG1910 COG1910, Periplasmic molybdate-binding protein/domain Inorganic ion transport and metabolism 54309729 Nonpathogen - hypothetical protein PBPRA2568 1 None None None 54307616 Common ksgA dimethyladenosine transferase PBPRA0402 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 54307554 Common rpsN 30S ribosomal protein S14 PBPRA0333 190 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 54308855 Common - putative EntE, Peptide arylation enzyme PBPRA1662 223 COG1021 EntE, Peptide arylation enzymes Secondary metabolites biosynthesis, transport, and catabolism 54309300 Common - putative DNA-binding transcriptional regulator PBPRA2120 178 COG0583 LysR, Transcriptional regulator Transcription 54308750 Common - hypothetical protein PBPRA1557 3 COG1289 COG1289, Predicted membrane protein Function unknown 54308621 Common - Putative nitrite reductase (NAD(P)H), large subunit PBPRA1428 188 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 54309032 Common - hypothetical protein PBPRA1846 29 None None None 54309367 Nonpathogen - hypothetical protein PBPRA2189 1 None None None 54308351 Common - cysteine/glutathione ABC transporter membrane/ATP-binding component PBPRA1158 249 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 54310638 Common - Putative transcriptional regulator, DeoR family PBPRA3600 110 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 54308299 Common - hypothetical protein PBPRA1106 18 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 54309525 Common - putative dehydrogenase subunit PBPRA2358 161 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 54310217 Common - hypothetical protein PBPRA3120 36 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 54308176 Common - hypothetical protein PBPRA0983 127 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 54309037 Common - hypothetical protein PBPRA1851 14 COG5473 COG5473, Predicted integral membrane protein Function unknown 54308031 Common - xanthine-guanine phosphoribosyltransferase PBPRA0836 66 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 54307518 Common - predicted hydrolase PBPRA0297 71 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 54310497 Common - DNA-directed RNA polymerase subunit beta' PBPRA3431 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 54309401 Common - putative saccharopine dehydrogenase PBPRA2229 54 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 54309117 Common - putative xanthine permease PBPRA1931 128 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 54308788 Nonpathogen - hypothetical protein PBPRA1595 3 None None None 54310334 Common - putative ABC superfamily transport protein PBPRA3246 102 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 54308289 Common - UDP-2,3-diacylglucosamine hydrolase PBPRA1096 76 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 54309949 Common - putative ABC transporter, ATP-binding protein PBPRA2795 249 COG1101 PhnK, ABC-type uncharacterized transport system, ATPase component General function prediction only 161936305 Common pheS phenylalanyl-tRNA synthetase subunit alpha PBPRA2156 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 54309483 Common - hypothetical protein PBPRA2316 11 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 54309309 Common - hypothetical AcrB/AcrD/AcrF family protein PBPRA2129 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 54309472 Common - hypothetical protein PBPRA2304 2 None None None 54308908 Common - hypothetical protein PBPRA1719 16 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54307290 Common - Putative 16kDa heat shock protein A PBPRA0053 74 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 54309059 Common - hypothetical protein PBPRA1873 3 None None None 54308391 Common - 4-amino-4-deoxychorismate lyase PBPRA1198 178 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 54307264 Common - hypothetical protein PBPRA0027 7 None None None 54309942 Common - hypothetical protein yhfZ PBPRA2788 12 COG1802 GntR, Transcriptional regulators Transcription 54307433 Common - hypothetical protein PBPRA0212 7 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 54309793 Common - putative DNA uptake protein PBPRA2632 37 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 54308720 Common - putative transport protein, PTR2 family PBPRA1527 76 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 54310527 Common - hypotetical general secretion pathway protein K PBPRA3474 34 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 54310124 Common - hypothetical protein PBPRA3008 19 None None None 54307930 Common - putative antioxidant, AhpC/Tsa family PBPRA0735 226 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 54310033 Common - putative transposase PBPRA2908 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307625 Common - putative thiamine ABC transporter PBPRA0411 249 COG3840 ThiQ, ABC-type thiamine transport system, ATPase component Coenzyme metabolism 54308546 Nonpathogen - hypothetical protein PBPRA1353 1 None None None 54308061 Common - hypothetical cell division protein ZipA PBPRA0866 42 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 54307465 Common - hypothetical secretion protein PBPRA0244 15 None None None 54307416 Common - hypothetical protein PBPRA0195 39 COG1401 McrB, GTPase subunit of restriction endonuclease Defense mechanisms 54307868 Common - hypothetical protein PBPRA0665 24 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 54310539 Common - hypothetical protein PBPRA3486 13 None None None 54310200 Common - hypothetical protein PBPRA3102 39 COG4104 COG4104, Uncharacterized conserved protein Function unknown 54309208 Common - phospho-2-dehydro-3-deoxyheptonate aldolase PBPRA2023 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 54308054 Nonpathogen - hypothetical protein PBPRA0859 2 None None None 54309308 Common - putative transposase PBPRA2128 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310380 Common - aspartate kinase III PBPRA3293 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 54307478 Common - primosome assembly protein PriA PBPRA0257 212 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 54310302 Common murC UDP-N-acetylmuramate--L-alanine ligase PBPRA3214 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 54308521 Nonpathogen - hypothetical protein PBPRA1328 1 None None None 54309335 Common pheT phenylalanyl-tRNA synthetase subunit beta PBPRA2155 246 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 54310055 Common - D,D-heptose 1,7-bisphosphate phosphatase PBPRA2939 130 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 54308251 Common - putative ferrous iron transport protein A PBPRA1058 64 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 54309226 Common - hypothetical transposase PBPRA2041 19 None None None 54309400 Common - putative carboxynorspermidine decarboxylase PBPRA2228 51 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 54308972 Common - hypothetical protein PBPRA1783 8 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 54308277 Common - thymidine kinase PBPRA1084 95 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 54309745 Common - hypothetical protein PBPRA2584 18 None None None 54307508 Common - hypothetical extracellular nuclease PBPRA0287 45 COG2374 COG2374, Predicted extracellular nuclease General function prediction only 54310241 Common - pyrroline-5-carboxylate reductase PBPRA3144 214 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 54309170 Common - putative protein yqeB PBPRA1985 109 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 54308314 Common - hypothetical protein PBPRA1121 88 COG0391 COG0391, Uncharacterized conserved protein Function unknown 54309450 Common - hypothetical protein PBPRA2282 31 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 54309130 Common - hypothetical protein PBPRA1944 30 None None None 54308697 Common - hypothetical protein PBPRA1504 3 None None None 54308911 Common - endo-1,4-D-glucanase PBPRA1722 33 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 54309190 Common - hypothetical hemolysin PBPRA2005 25 COG3042 Hlx, Putative hemolysin General function prediction only 54307790 Common nhaR transcriptional activator NhaR PBPRA0585 116 COG0583 LysR, Transcriptional regulator Transcription 54308544 Nonpathogen - hypothetical protein PBPRA1351 1 None None None 54308655 Common - 3-oxoacyl-(acyl carrier protein) synthase III PBPRA1462 181 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 54308527 Common - hypothetical protein PBPRA1334 27 COG3183 COG3183, Predicted restriction endonuclease Defense mechanisms 54309357 Common - hypothetical DNA-binding response regulator OmpR PBPRA2178 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54307594 Common - hypothetical protein PBPRA0380 96 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 54308675 Common - putative transcriptional regulator, AsnC family PBPRA1482 141 COG1522 Lrp, Transcriptional regulators Transcription 54309622 Common - hypothetical phosphoglycolate phosphatase PBPRA2458 167 COG0546 Gph, Predicted phosphatases General function prediction only 54307330 Common thiG thiazole synthase PBPRA0109 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 54308050 Common - putative periplasmic nitrate reductase, cytochrome c-type protein PBPRA0855 47 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 54308615 Common - hypothetical protein PBPRA1422 62 COG2391 COG2391, Predicted transporter component General function prediction only 54310026 Common - putative permease PerM PBPRA2901 148 COG0628 PerM, Predicted permease General function prediction only 161936341 Common - glycerol-3-phosphate acyltransferase PBPRA0164 48 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 54309161 Common - hypothetical transcriptional regulator PBPRA1976 104 COG0789 SoxR, Predicted transcriptional regulators Transcription 54308464 Common - Putative transcriptional regulator, rpiR family PBPRA1271 101 COG1737 RpiR, Transcriptional regulators Transcription 54309423 Common lamB maltoporin PBPRA2255 27 COG4580 LamB, Maltoporin (phage lambda and maltose receptor) Carbohydrate transport and metabolism 54307391 Common - putative cytochrome c oxidase subunit III PBPRA0170 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 54307343 Common - putative tatD gene product PBPRA0122 235 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 54307905 Common - hypothetical protein PBPRA0702 2 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 54307243 Common - Putative amino acid ABC transporter, permease protein PBPRA0006 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 54308065 Nonpathogen - hypothetical protein PBPRA0870 1 None None None 54308418 Common - putative trehalose-6-phosphate hydrolase PBPRA1225 168 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 54307280 Common - Hypothetical LafC PBPRA0043 75 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 54307361 Common - hypothetical protein PBPRA0140 51 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 54308356 Common lolA outer-membrane lipoprotein carrier protein PBPRA1163 72 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 54310158 Common - putative protease, insulinase family PBPRA3048 197 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 54309275 Common - hypothetical ParA family protein PBPRA2091 203 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54308583 Common - hypothetical protein PBPRA1390 2 None None None 54308275 Common - putative DNA-binding protein H-NS PBPRA1082 26 COG2916 Hns, DNA-binding protein H-NS General function prediction only 54308641 Common - formyltetrahydrofolate deformylase PBPRA1448 214 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 54307255 Common - hypothetical protein PBPRA0018 59 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 54307789 Nonpathogen - hypothetical protein PBPRA0584 1 None None None 54307911 Common - putative ferredoxin PBPRA0716 106 COG2768 COG2768, Uncharacterized Fe-S center protein General function prediction only 54308014 Common - Hypothetical methyltransferase PBPRA0819 97 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 54307502 Common aroB 3-dehydroquinate synthase PBPRA0281 209 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 54309041 Common - Putative spermidine/putrescine-binding periplasmic protein PBPRA1855 139 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 54310519 Common - hypothetical protein PBPRA3466 15 None None None 54309157 Common - hypothetical acetyltransferase PBPRA1972 26 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 54310132 Common - hypothetical protein PBPRA3022 121 COG4105 ComL, DNA uptake lipoprotein General function prediction only 54309984 Common - hypothetical protein ybaK PBPRA2835 115 COG2606 EbsC, Uncharacterized conserved protein Function unknown 54309506 Common - hypothetical enoyl-CoA hydratase/isomerase PBPRA2339 172 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 54307442 Common - putative transcriptional regulator PBPRA0221 61 COG1309 AcrR, Transcriptional regulator Transcription 54308840 Common - hypothetical Na+/H+ antiporter PBPRA1647 41 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 54309409 Common - putative ABC transporter, membrane-spanning permease PBPRA2241 78 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 54308242 Common - dihydrolipoamide acetyltransferase PBPRA1049 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 54309753 Common - Putative selenophosphate synthase PBPRA2592 131 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 54307376 Common - RNA polymerase factor sigma-32 PBPRA0155 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 54307494 Common - DNA-binding transcriptional regulator OxyR PBPRA0273 190 COG0583 LysR, Transcriptional regulator Transcription 54309595 Common - DNA-binding transcriptional regulator HexR PBPRA2430 97 COG1737 RpiR, Transcriptional regulators Transcription 54308612 Nonpathogen - hypothetical protein PBPRA1419 1 None None None 54309946 Common - hypothetical iron-regulated protein PBPRA2792 29 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 54310021 Common - lipoyl synthase PBPRA2896 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 54310093 Common - hypothetical protein PBPRA2977 23 None None None 54308163 Common - putative transcriptional regulator, AsnC family PBPRA0970 162 COG1522 Lrp, Transcriptional regulators Transcription 54310267 Common - putative Carbonic anhydrase PBPRA3179 148 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 54308258 Common - hypothetical protein PBPRA1065 20 COG3102 COG3102, Uncharacterized protein conserved in bacteria Function unknown 54309967 Common - hypothetical sugar nucleotide epimerase PBPRA2813 108 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 54307807 Common - putative RNA-binding protein PBPRA0602 97 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 161936301 Common cysB transcriptional regulator CysB PBPRA2470 189 COG0583 LysR, Transcriptional regulator Transcription 161936288 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase PBPRA3210 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 54309385 Common - putative transporter PBPRA2207 30 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54310257 Common - hypothetical protein PBPRA3169 14 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 54310318 Common - hypothetical hemolysin PBPRA3230 63 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 54310167 Common - putative CinA-related protein PBPRA3069 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 54309939 Common - putative protein yhfU PBPRA2785 11 None None None 54308715 Common - dsDNA-mimic protein PBPRA1522 18 COG3099 COG3099, Uncharacterized protein conserved in bacteria Function unknown 54310636 Nonpathogen - Hypothetical transcriptional regulator PBPRA3598 1 COG1476 COG1476, Predicted transcriptional regulators Transcription 54308097 Common flgE flagellar hook protein FlgE PBPRA0904 126 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 54310147 Common - putative carbon starvation protein A PBPRA3037 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 54309960 Common - hypothetical Y4jO PBPRA2806 11 None None None 54307672 Common - hypothetical protein PBPRA0459 95 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 54309061 Common - Hypothetical D-alanyl-D-alanine endopeptidase PBPRA1875 152 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 54310085 Common - methionine aminopeptidase PBPRA2969 246 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 54310253 Common - putative membrane-bound lytic mureintransglycosylase C PBPRA3156 131 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 54309339 Common - putative tRNA synthetase PBPRA2159 248 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54308925 Nonpathogen - hypothetical protein PBPRA1736 3 None None None 54309289 Common - putative transcriptional regulator, LacI family PBPRA2109 129 COG1609 PurR, Transcriptional regulators Transcription 54309607 Common - putative peptide ABC transporter, permease protein PBPRA2442 219 COG4168 SapB, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 54310532 Common - putative general secretion pathway protein F PBPRA3479 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 54310226 Common - hypothetical protein PBPRA3129 208 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 54308888 Nonpathogen - hypothetical protein PBPRA1699 1 None None None 54307714 Common - hypothetical protein PBPRA0509 2 None None None 54307272 Common - Putative FlgG flagellar basal-body rod protein PBPRA0035 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 54310496 Common - anti-RNA polymerase sigma 70 factor PBPRA3430 24 COG3160 Rsd, Regulator of sigma D Transcription 54307555 Common rpsH 30S ribosomal protein S8 PBPRA0334 232 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 54308396 Common - glucose-specific PTS system IIBC components PBPRA1203 49 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 54308876 Common - putative immunogenic protein PBPRA1687 86 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 54308555 Common - putative transposase and inactivate derivatives PBPRA1362 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310404 Nonpathogen - hypothetical protein PBPRA3324 1 None None None 54309678 Common - hypothetical protein PBPRA2514 23 COG3915 COG3915, Uncharacterized protein conserved in bacteria Function unknown 54309806 Common - putative transcriptional regulator PBPRA2646 133 COG0583 LysR, Transcriptional regulator Transcription 54309093 Common - hypothetical protein PBPRA1907 12 None None None 54309921 Common - hypothetical protein PBPRA2767 20 COG3235 COG3235, Predicted membrane protein Function unknown 54309885 Common - hypothetical protein PBPRA2731 16 COG3457 COG3457, Predicted amino acid racemase Amino acid transport and metabolism 54308809 Nonpathogen - hypothetical protein PBPRA1616 1 None None None 54307938 Common tgt queuine tRNA-ribosyltransferase PBPRA0743 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 54309412 Common - putative xanthine dehydrogenase, XdhB subunit PBPRA2244 109 COG4631 XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit B Nucleotide transport and metabolism 54307298 Common - Putative transcriptional regulator, LysR family PBPRA0061 91 COG0583 LysR, Transcriptional regulator Transcription 54307291 Common avtA valine--pyruvate transaminase PBPRA0054 183 COG3977 COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase Amino acid transport and metabolism 54308733 Common - putative heavy metal membrane efflux protein PBPRA1540 132 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 54308403 Common - D-lactate dehydrogenase PBPRA1210 229 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 54307582 Common - transposase and inactivated derivative PBPRA0368 28 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308385 Common - fatty acid/phospholipid synthesis protein PBPRA1192 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 54309680 Common - putative transporter, BCCT family PBPRA2516 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 54310367 Common - putative MSHA biogenesis protein MshG PBPRA3279 148 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 54307535 Common - 30S ribosomal protein S7 PBPRA0314 246 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 54309419 Common - hypothetical ABC transporter, periplasmic solute-binding protein, family 5 PBPRA2251 183 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 54310293 Common - hypothetical protein PBPRA3205 44 COG4582 COG4582, Uncharacterized protein conserved in bacteria Function unknown 54308261 Common - hypothetical protein PBPRA1068 3 None None None 54307265 Nonpathogen - Hypothetical flagellar protein PBPRA0028 2 None None None 54310333 Common - hypothetical protein PBPRA3245 64 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 54308551 Nonpathogen - hypothetical protein PBPRA1358 1 None None None 54307678 Common - hypothetical protein PBPRA0465 20 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 54307943 Common - putative RNA methyltransferase, TrmH family PBPRA0748 155 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 54307626 Common thiP thiamin transporter membrane protein PBPRA0412 200 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 54310106 Common - DNA-binding transcriptional activator GcvA PBPRA2990 186 COG0583 LysR, Transcriptional regulator Transcription 54310528 Common - putative Type II secretory pathway, component EpsJ PBPRA3475 30 COG4795 PulJ, Type II secretory pathway, component PulJ Intracellular trafficking and secretion 54309328 Common - putative PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities PBPRA2148 232 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 54308899 Common - hypothetical protein PBPRA1710 8 None None None 54310172 Common surE stationary phase survival protein SurE PBPRA3074 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 54307436 Common - hypothetical glycosyl transferase PBPRA0215 186 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54308281 Common hisH imidazole glycerol phosphate synthase subunit HisH PBPRA1088 216 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 54307825 Common - putative acetyltransferase PBPRA0622 92 COG3153 COG3153, Predicted acetyltransferase General function prediction only 54308589 Common - hypothetical transcriptional regulator, LysR family PBPRA1396 179 COG0583 LysR, Transcriptional regulator Transcription 161936293 Common - D-erythrose 4-phosphate dehydrogenase PBPRA3132 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 54308376 Common - hypothetical protein PBPRA1183 10 None None None 54309201 Common - hypothetical protein PBPRA2016 9 None None None 54309394 Nonpathogen - hypothetical protein PBPRA2216 2 None None None 54308956 Common - dihydroorotate dehydrogenase 2 PBPRA1767 234 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 54308620 Common nirD nitrite reductase small subunit PBPRA1427 47 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 54310601 Nonpathogen - hypothetical protein PBPRA3549 2 None None None 54308999 Nonpathogen - hypothetical protein PBPRA1812 3 COG4688 COG4688, Uncharacterized protein conserved in bacteria Function unknown 54308771 Nonpathogen - hypothetical SulA, SOS-response cell division inhibitor, blocks FtsZring formation PBPRA1578 1 COG5404 SulA, SOS-response cell division inhibitor, blocks FtsZ ring formation Cell division and chromosome partitioning 54309271 Common - hypothetical protein PBPRA2087 191 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 54308569 Common - hypothetical protein PBPRA1376 2 None None None 54309813 Common truA tRNA pseudouridine synthase A PBPRA2653 236 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 54308935 Common - hypothetical protein PBPRA1746 38 COG3148 COG3148, Uncharacterized conserved protein Function unknown 54310426 Common - hypothetical protein PBPRA3346 21 COG3242 COG3242, Uncharacterized protein conserved in bacteria Function unknown 54307730 Common - putative peptide ABC transporter, periplasmicpeptide-binding protein PBPRA0525 177 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 54308219 Common - Putative inosine-guanosine kinase PBPRA1026 50 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 54309768 Common - hypothetical protein PBPRA2607 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 54310412 Common - hypothetical protein PBPRA3332 25 COG3137 COG3137, Putative salt-induced outer membrane protein Cell envelope biogenesis, outer membrane 54308212 Common recR recombination protein RecR PBPRA1019 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 54309312 Common - putative sodium/alanine symporter PBPRA2132 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 54310321 Common - putative ubiquinol--cytochrome c reductase, cytochrome c1 PBPRA3233 70 COG2857 CYT1, Cytochrome c1 Energy production and conversion 54308027 Common - DNA polymerase IV PBPRA0832 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 54310430 Common hfq RNA-binding protein Hfq PBPRA3350 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 54307854 Common - hypothetical protein PBPRA0651 4 None None None 54307971 Common - hypothetical protein PBPRA0776 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54308368 Common - hypothetical protein PBPRA1175 107 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 54309638 Common - hypothetical metal-dependent amidase/aminoacylase/carboxypeptidase PBPRA2474 165 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 54308139 Common - putative purine-binding chemotaxis protein CheW PBPRA0946 139 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 54308060 Common - putative sulfate transport protein CysZ PBPRA0865 42 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 54308942 Common - hypothetical AraC-family transcriptionalregulatory protein PBPRA1753 71 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54310017 Common - hypothetical rare lipoprotein A PBPRA2892 137 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 54308949 Common - putative PTS system, glucose-specific IIBCcomponent PBPRA1760 52 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 54310180 Common - putative GTP pyrophosphokinase PBPRA3082 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 54308865 Common - hypothetical transcriptional regulator, AraC family PBPRA1672 93 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54308892 Common - hypothetical protein PBPRA1703 10 None None None 54310561 Common - ATP-dependent DNA helicase RecQ PBPRA3508 236 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 54309350 Common - formimidoylglutamase PBPRA2171 47 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 54309792 Common - hypothetical protein PBPRA2631 19 COG3615 TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance Inorganic ion transport and metabolism 54308492 Common - putative CG2 omega domain PBPRA1299 2 None None None 54310604 Common - Y4jO PBPRA3552 11 None None None 54307784 Common - hypothetical protein PBPRA0579 75 COG0730 COG0730, Predicted permeases General function prediction only 54309706 Common - hypothetical protein PBPRA2545 4 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 54307709 Common - putative 6-phospho-beta-glucosidase PBPRA0497 54 COG1486 CelF, Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases Carbohydrate transport and metabolism 54307728 Common - putative peptide ABC transporter, permeaseprotein PBPRA0523 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54310003 Common - putative 2-methylthioadenine synthetase PBPRA2878 234 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 54310632 Common - branched-chain amino acid aminotransferase PBPRA3594 219 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 54309360 Common - putative chitinase PBPRA2181 17 COG3979 COG3979, Uncharacterized protein contain chitin-binding domain type 3 General function prediction only 54310010 Common leuS leucyl-tRNA synthetase PBPRA2885 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54308455 Common - hypothetical cytochrome c-type biogenesis protein CcmF PBPRA1262 130 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 54308815 Common - hypothetical protein PBPRA1622 26 COG1474 CDC6, Cdc6-related protein, AAA superfamily ATPase DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones 54309865 Nonpathogen - hypothetical protein PBPRA2705 6 None None None 54310454 Common groEL chaperonin GroEL PBPRA3387 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 54308582 Nonpathogen - hypothetical protein PBPRA1389 2 None None None 54310064 Common - hypothetical protein PBPRA2948 6 None None None 54310443 Common - putative carbonic anhydrase PBPRA3376 52 COG3338 Cah, Carbonic anhydrase Inorganic ion transport and metabolism 54310113 Common - putative exodeoxyribonuclease V, 67 kDa subunit PBPRA2997 128 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 54309897 Common - hypothetical peptide ABC transporter, periplasmic peptide-binding protein PBPRA2743 163 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 54308001 Common - putative geranyltranstransferase PBPRA0806 242 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 54310079 Common - putative phosphatidate cytidylyltransferase PBPRA2963 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 54310468 Common - DNA polymerase III subunit epsilon PBPRA3402 71 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 54309019 Common - putative cytochrome c oxidase, subunit CcoQ PBPRA1833 14 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 54307951 Common - hypothetical protein PBPRA0756 43 COG2975 COG2975, Uncharacterized protein conserved in bacteria Function unknown 54309803 Common rfaH transcriptional activator RfaH PBPRA2643 62 COG0250 NusG, Transcription antiterminator Transcription 54309663 Common - putative Flp pilus assembly protein PBPRA2499 158 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 54309919 Common - putative transcriptional regulator, LysR family PBPRA2765 189 COG0583 LysR, Transcriptional regulator Transcription 54308978 Common - ribosome-associated GTPase PBPRA1789 163 COG1162 COG1162, Predicted GTPases General function prediction only 54307358 Common - putative lysophospholipase PBPRA0137 99 COG2267 PldB, Lysophospholipase Lipid metabolism 54307396 Common - putative DNA-damage-inducible protein F PBPRA0175 159 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 54310473 Common - hypothetical protein PBPRA3407 21 COG3924 COG3924, Predicted membrane protein Function unknown 54307923 Common - hypothetical phosphate ABC transporter, permease protein PBPRA0728 221 COG4590 COG4590, ABC-type uncharacterized transport system, permease component General function prediction only 54307945 Common - cysteine desulfurase PBPRA0750 240 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 54309366 Common - putative amino acid ABC transporter, ATP-binding protein PBPRA2188 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 54310046 Common - hypothetical membrane-bound lytic murein transglycosylase D PBPRA2921 132 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 54308366 Common - hypothetical AsmA protein PBPRA1173 14 None None None 54309816 Common - erythronate-4-phosphate dehydrogenase PBPRA2656 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 54310328 Common - putative DegQ serine protease PBPRA3240 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 54307901 Common - putative DnaJ protein, DnaJ-class molecular chaperone with C-terminal Zn finger domain PBPRA0698 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 54308322 Common - putative transcriptional regulator PBPRA1129 49 COG0789 SoxR, Predicted transcriptional regulators Transcription 161936337 Common - dihydrolipoamide dehydrogenase PBPRA0271 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 54307683 Common - Putative translation initiation inhibitor PBPRA0470 188 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 54308723 Common - hypothetical protein PBPRA1530 8 None None None 54308817 Nonpathogen - hypothetical protein PBPRA1624 3 None None None 54310001 Common - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase PBPRA2876 133 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 54309445 Common - hypothetical protein PBPRA2277 48 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 54309458 Common - hypothetical citG protein PBPRA2290 48 COG1767 CitG, Triphosphoribosyl-dephospho-CoA synthetase Coenzyme metabolism 54309074 Common - putative sigma-54 dependent response regulator PBPRA1888 219 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54309124 Common - putative short-chain dehydrogenase PBPRA1938 160 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 54309788 Common - hypothetical protein PBPRA2627 29 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 54309053 Common - hypothetical protein PBPRA1867 7 None None None 54309948 Common - putative ABC transporter, permease protein PBPRA2794 51 COG4120 COG4120, ABC-type uncharacterized transport system, permease component General function prediction only 54308622 Nonpathogen - hypothetical protein PBPRA1429 1 None None None 54307687 Common pyrB aspartate carbamoyltransferase catalytic subunit PBPRA0474 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 54309901 Nonpathogen - hypothetical protein PBPRA2747 1 None None None 54310015 Common - putative penicillin-binding protein 2 PBPRA2890 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 54310630 Common - Putative ComM-related protein PBPRA3592 204 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 54309978 Common - hypothetical cation-transporting ATPase PBPRA2824 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 54309858 Common - putative mannosyl-transferase PBPRA2698 173 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54308853 Common - hypothetical protein PBPRA1660 234 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 54307522 Common - putative ABC transporter, ATP-binding protein PBPRA0301 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 54308283 Common - histidinol-phosphate aminotransferase PBPRA1090 232 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 54310111 Common - hypothetical protein PBPRA2995 2 None None None 54308171 Common - hypothetical protein PBPRA0978 3 None None None 54308906 Common - hypothetical protein PBPRA1717 16 None None None 54308782 Common - hypothetical protein PBPRA1589 28 COG5433 COG5433, Transposase DNA replication, recombination, and repair 54307513 Common - hypothetical protein PBPRA0292 21 None None None 54307961 Common - outer membrane protein assembly complex subunit YfgL PBPRA0766 125 COG1520 COG1520, FOG: WD40-like repeat Function unknown 54308548 Common - Hypothetical phage portal protein PBPRA1355 49 COG4695 COG4695, Phage-related protein Function unknown 54308985 Nonpathogen - hypothetical protein PBPRA1798 1 None None None 54307267 Common flgB flagellar basal body rod protein FlgB PBPRA0030 78 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 54307832 Common - putative NupC family protein PBPRA0629 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 54309661 Nonpathogen - hypothetical protein PBPRA2497 2 None None None 54309722 Common - electron transport complex protein RnfB PBPRA2561 133 COG2878 COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB Energy production and conversion 54309004 Common - hypothetical cell division protein PBPRA1817 3 None None None 54309891 Common - exonuclease III PBPRA2737 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 54308293 Common glpQ glycerophosphodiester phosphodiesterase PBPRA1100 118 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 54310126 Common - transposase and inactivated derivative PBPRA3010 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309748 Common - hypothetical hydrolase of alkaline phosphatase superfamily PBPRA2587 60 COG3083 COG3083, Predicted hydrolase of alkaline phosphatase superfamily General function prediction only 54309735 Common - hypothetical lipase PBPRA2574 9 None None None 54309883 Common - hypothetical protein PBPRA2729 51 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 54307665 Common - hypothetical protein PBPRA0452 26 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 54307463 Nonpathogen - hypothetical protein PBPRA0242 1 None None None 54307516 Common - Putative phosphoribulokinase PBPRA0295 54 COG3954 PrkB, Phosphoribulokinase Energy production and conversion 54308593 Common - hypothetical protein PBPRA1400 4 COG1359 COG1359, Uncharacterized conserved protein Function unknown 54308537 Common tnaA tryptophanase PBPRA1344 44 COG3033 TnaA, Tryptophanase Amino acid transport and metabolism 54309321 Nonpathogen - hypothetical protein PBPRA2141 1 None None None 54308756 Common - iron-hydroxamate transporter permease subunit PBPRA1563 192 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 54309291 Nonpathogen - hypothetical protein PBPRA2111 1 None None None 54309676 Common - Putative sodium-dependent transporter PBPRA2512 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 54310615 Common - Hypothetical Smf protein PBPRA3577 210 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 54307326 Common - hypothetical protein PBPRA0105 6 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 54309971 Nonpathogen - hypothetical protein PBPRA2817 2 None None None 54309983 Common - hypothetical transcriptional regulator, LysR family PBPRA2834 144 COG0583 LysR, Transcriptional regulator Transcription 54309799 Common tig trigger factor PBPRA2638 215 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 54307846 Common - NTPase PBPRA0643 34 COG1986 COG1986, Uncharacterized conserved protein Function unknown 54309640 Common - hypothetical protein PBPRA2476 22 None None None 54307886 Common - hypothetical protein PBPRA0683 3 None None None 54309849 Nonpathogen - hypothetical protein PBPRA2689 1 None None None 54307836 Common deoD purine nucleoside phosphorylase PBPRA0633 99 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 54307313 Common - hypothetical protein PBPRA0086 37 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 54309770 Common nhaB sodium/proton antiporter PBPRA2609 38 COG3067 NhaB, Na+/H+ antiporter Inorganic ion transport and metabolism 54308596 Common - hypothetical permease protein PBPRA1403 73 COG4665 FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component Secondary metabolites biosynthesis, transport, and catabolism 54309965 Common - hypothetical PTS system mannose-specific, factor IIC PBPRA2811 23 None None None 54310315 Common - hypothetical lipoprotein PBPRA3227 44 COG3107 LppC, Putative lipoprotein General function prediction only 54310503 Common nusG transcription antitermination protein NusG PBPRA3437 215 COG0250 NusG, Transcription antiterminator Transcription 54308208 Common - hypothetical protein PBPRA1015 64 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 54308404 Common - putative response regulator PBPRA1211 75 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54309501 Common - hyothetical protein PBPRA2334 2 None None None 54307592 Common - putative peptide methionine sulfoxide reductase PBPRA0378 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 54308233 Common - phosphoglucomutase PBPRA1040 225 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 54309437 Common - hypothetical esterase of the alpha-beta hydrolase superfamily PBPRA2269 35 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 54309779 Common - hypothetical protein PBPRA2618 22 COG2314 XynA, Predicted membrane protein Function unknown 54307894 Common - hypothetical protein PBPRA0691 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 54308092 Common - putative chemotaxis CheV PBPRA0899 177 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 54308070 Common - hypothetical outer membrane protein PBPRA0876 20 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 161936311 Common tdh L-threonine 3-dehydrogenase PBPRA1730 208 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 54309187 Common - Hypothetical transmembrane transportprotein PBPRA2002 103 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 54307274 Common - Hypothetical flagellar protein PBPRA0037 10 COG3951 COG3951, Rod binding protein Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 54309645 Common - short chain dehydrogenase PBPRA2481 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 54308473 Common - hypothetical protein PBPRA1280 5 None None None 54310556 Common - DNA polymerase I PBPRA3503 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 54307305 Common - transposase and inactivated derivative PBPRA0078 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310137 Common - hypothetical LytS, regulator of cell autolysis PBPRA3027 105 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 54308140 Common - hypothetical protein PBPRA0947 11 None None None 54309629 Common - putative tyrosine-specific transport protein PBPRA2465 43 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 54310077 Common - putative membrane-associated Zn-dependent protease PBPRA2961 211 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 54309386 Common - glyceraldehyde-3-phosphate dehydrogenase PBPRA2208 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 54308530 Nonpathogen - hypothetical protein PBPRA1337 1 None None None 54308609 Common - hypothetical protein PBPRA1416 3 None None None 54310215 Common - 2-octaprenyl-6-methoxyphenyl hydroxylase PBPRA3118 119 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 54307426 Common - hypothetical protein PBPRA0205 2 None None None 54309076 Common - Putative ABC transporter, permease protein PBPRA1890 181 COG4662 TupA, ABC-type tungstate transport system, periplasmic component Coenzyme metabolism 54307421 Common slmA nucleoid occlusion protein PBPRA0200 75 COG1309 AcrR, Transcriptional regulator Transcription 54308576 Common - hypothetical protein PBPRA1383 3 None None None 54308774 Common - similar to transposase PBPRA1581 7 None None None 54307875 Common - hypothetical protein PBPRA0672 46 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 54308663 Common - hypothetical protein PBPRA1470 227 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 54310580 Common - putative porphobilinogen deaminase PBPRA3527 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 54307982 Common - putative transglycosylase, Slt family PBPRA0787 145 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 54307337 Common - putative ubiquinone/menaquinone biosynthesis methlytransferase UbiE PBPRA0116 210 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 54307411 Common rpoZ DNA-directed RNA polymerase subunit omega PBPRA0190 109 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 54308969 Nonpathogen - hypothetical protein PBPRA1780 1 None None None 54307374 Common - putative cell division protein FtsY PBPRA0153 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 54310197 Common - hypothetical protein PBPRA3099 43 COG2938 COG2938, Uncharacterized conserved protein Function unknown 54307659 Common - hypothetical potassium channel protein PBPRA0446 99 None None None 54309404 Common - putative CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase PBPRA2236 206 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 54309511 Common - hypothetical protein PBPRA2344 8 None None None 54309465 Nonpathogen - hypothetical protein PBPRA2297 1 None None None 54308434 Common - hypothetical protein PBPRA1241 110 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 54308379 Common - Putative ribonuclease E PBPRA1186 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 54309397 Common - putative transcriptional regulator, LysR family PBPRA2222 190 COG0583 LysR, Transcriptional regulator Transcription 54308033 Common - DNA-binding transcriptional regulator Crl PBPRA0838 13 None None None 54308198 Common - hypothetical outer membrane cation efflux protein PBPRA1005 38 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 54308933 Common - hypothetical sensory box/GGDEF family protein PBPRA1744 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 54308789 Common - hypothetical protein PBPRA1596 15 COG3793 TerB, Tellurite resistance protein Inorganic ion transport and metabolism 54307488 Common - acetylglutamate kinase PBPRA0267 209 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 54310169 Common - putative RNA polymerase sigma-38 factor PBPRA3071 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 54307622 Common - putative ribosomal large subunit pseudouridine synthase A PBPRA0408 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 54310236 Common - hypothetical protein PBPRA3139 121 COG1678 COG1678, Putative transcriptional regulator Transcription 54308563 Common glpC sn-glycerol-3-phosphate dehydrogenase subunit C PBPRA1370 171 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 54309250 Common - hypothetical protein PBPRA2066 5 None None None 54307721 Common - putative phosphoglucomutase/phosphomannomutase PBPRA0516 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 54309470 Nonpathogen - hypothetical protein PBPRA2302 1 None None None 54310243 Common - hypothetical protein PBPRA3146 76 COG1872 COG1872, Uncharacterized conserved protein Function unknown 54309671 Common - putative acyl-CoA hydrolase PBPRA2507 137 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 54307309 Common - transposase and inactivated derivative PBPRA0082 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307797 Common lspA lipoprotein signal peptidase PBPRA0592 197 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 54308316 Common - hypothetical protein PBPRA1123 2 None None None 54308077 Common - hypothetical type I restriction-modification system specificity determinant PBPRA0883 83 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 54308960 Common - ABC transporter ATPase component PBPRA1771 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 54309954 Nonpathogen - hypothetical protein PBPRA2800 2 None None None 54310540 Common - hypothetical protein PBPRA3487 52 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 54310366 Nonpathogen - hypothetical protein PBPRA3278 2 None None None 54308998 Common - hypothetical protein PBPRA1811 6 None None None 54309237 Nonpathogen - hypothetical protein PBPRA2053 1 None None None 54309371 Common - hypothetical methyl-accepting chemotaxis protein PBPRA2193 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309959 Common - hypothetical transposase PBPRA2805 19 None None None 54308012 Common - putative peptidyl-prolyl cis-trans isomerase A PBPRA0817 185 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 54308828 Common - hypothetical transposase PBPRA1635 3 None None None 54307780 Common - hypothetical protein PBPRA0575 2 None None None 54310296 Common - preprotein translocase subunit SecA PBPRA3208 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 54310370 Common - hypothetical type II secretory pathway, component ExeA PBPRA3282 71 COG3267 ExeA, Type II secretory pathway, component ExeA (predicted ATPase) Intracellular trafficking and secretion 54308871 Common - hypothetical protein PBPRA1682 22 None None None 54307674 Common - putative xylosidase PBPRA0461 148 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 54308838 Nonpathogen - hypothetical protein PBPRA1645 4 None None None 54310210 Common - hypothetical protein PBPRA3113 4 COG1433 COG1433, Uncharacterized conserved protein Function unknown 54307757 Common thrA bifunctional aspartokinase I/homeserine dehydrogenase I PBPRA0552 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 54310230 Common - transketolase PBPRA3133 221 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 54310260 Common - glutamyl-Q tRNA(Asp) synthetase PBPRA3172 242 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 54310597 Common - putative oligopeptidase A PBPRA3544 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 54309378 Common - hypothetical protein PBPRA2200 25 None None None 54307661 Common - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase PBPRA0448 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 54307654 Common - hypothetical protein PBPRA0441 13 None None None 54307452 Common - hypothetical transcriptional regulator CpxR PBPRA0231 205 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54308837 Common - hypothetical protein PBPRA1644 3 None None None 54310421 Common - putative Exoribonuclease R PBPRA3341 202 COG0557 VacB, Exoribonuclease R Transcription 54310286 Common - N-acetyl-anhydromuranmyl-L-alanine amidase PBPRA3198 107 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 54307986 Common - hypothetical protein PBPRA0791 48 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308042 Common - hypothetical protein PBPRA0847 9 COG4519 COG4519, Uncharacterized protein conserved in bacteria Function unknown 54307866 Common - hypothetical protein PBPRA0663 22 COG3913 SciT, Uncharacterized protein conserved in bacteria Function unknown 54310356 Common - rod shape-determining protein MreD PBPRA3268 52 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 54308692 Common - hypothetical periplasmic protein PBPRA1499 6 None None None 54307524 Common - glutathione-regulated potassium-efflux system protein KefB PBPRA0303 191 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 54310160 Common - putative oxaloacetate decarboxylase, beta subunit PBPRA3050 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 54309220 Common - putative DnaK-related protein (Molecular chaperone) PBPRA2035 64 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 54310116 Common - hypothetical protein PBPRA3000 46 COG1275 TehA, Tellurite resistance protein and related permeases Inorganic ion transport and metabolism 54309743 Common - hypothetical protein PBPRA2582 16 COG0700 SpmB, Uncharacterized membrane protein Function unknown 54308150 Common - putative long-chain fatty acid transport protein PBPRA0957 76 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 54308878 Common - cytidine deaminase PBPRA1689 74 COG0295 Cdd, Cytidine deaminase Nucleotide transport and metabolism 54310008 Common - hypothetical protein PBPRA2883 30 COG2930 COG2930, Uncharacterized conserved protein Function unknown 54308256 Common - hypothetical GGDEF family protein PBPRA1063 175 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54310387 Common - putative sulfite synthesis pathway protein PBPRA3307 176 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 54307418 Common - hypothetical protein PBPRA0197 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 54308488 Common - aquaporin Z PBPRA1295 133 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 54307768 Common - hypothetical O-methyltransferase PBPRA0563 56 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 54308901 Common - hypothetical protein PBPRA1712 49 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309261 Common - hypothetical methyl-accepting chemotaxis protein PBPRA2077 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54310450 Common - hypothetical protein PBPRA3383 126 COG1509 KamA, Lysine 2,3-aminomutase Amino acid transport and metabolism 54310278 Common - putative glycerate kinase PBPRA3190 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 54307892 Common - hypothetical protein PBPRA0689 42 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 54307604 Common - arginine repressor PBPRA0390 56 COG1438 ArgR, Arginine repressor Transcription 54309148 Common - Putative cold shock-like protein cspG PBPRA1962 184 COG1278 CspC, Cold shock proteins Transcription 54309784 Common - acyl-CoA thioester hydrolase YfbB PBPRA2623 104 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54308446 Common - hypothetical protein PBPRA1253 53 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 54310069 Common dnaE DNA polymerase III subunit alpha PBPRA2953 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 54309218 Common - hypothetical protein PBPRA2033 26 None None None 54309016 Common - hypothetical protein PBPRA1830 5 None None None 54309027 Common - Putative ATPase PBPRA1841 166 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 54309479 Common - putative ABC-type multidrug transport system, ATPase component PBPRA2312 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 54309873 Common - hypothetical membrane protein PBPRA2713 133 COG2860 COG2860, Predicted membrane protein Function unknown 54310179 Common mazG nucleoside triphosphate pyrophosphohydrolase PBPRA3081 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 54309452 Common - N-acetylmannosamine kinase PBPRA2284 159 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 54310461 Common - putative transcriptional regulator, LuxR family PBPRA3395 197 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 54309701 Common - hypothetical protein PBPRA2539 4 None None None 54308743 Common - Hypothetical glycine betaine transporter PBPRA1550 95 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 54308183 Common - Hypothetical transporter PBPRA0990 80 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 54308329 Common - putative methyl-accepting chemotaxis protein PBPRA1136 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54308481 Nonpathogen - hypothetical protein PBPRA1288 2 None None None 54309050 Common - hypothetical chaperone PBPRA1864 36 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 54309211 Common - hypothetical pirin-related protein PBPRA2026 148 COG1741 COG1741, Pirin-related protein General function prediction only 54309823 Common - hypothetical undecaprenylphosphateN-acetylglucosamine 1-phosphate transferase PBPRA2663 187 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 54308177 Common - hypothetical protein PBPRA0984 2 None None None 54308159 Common - hypothetical protein PBPRA0966 70 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 54308653 Common - omega-3 polyunsaturated fatty acid synthase PfaA PBPRA1460 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 54309081 Common - hypothetical protein PBPRA1895 101 COG0583 LysR, Transcriptional regulator Transcription 54310134 Common - putative chorismate mutase/prephenate dehydratase PBPRA3024 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 54308416 Common treR trehalose repressor PBPRA1223 126 COG1609 PurR, Transcriptional regulators Transcription 54307747 Common - putative glutamate synthase, large subunit PBPRA0542 202 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 54307257 Common - Hypothetical two-component response regulator PBPRA0020 170 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54309139 Common - hypothetical protein PBPRA1953 175 COG0073 ARC1, EMAP domain General function prediction only 54309589 Common - hypothetical protein PBPRA2423 25 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 54307289 Nonpathogen - hypothetical protein PBPRA0052 1 None None None 54309337 Common rplT 50S ribosomal protein L20 PBPRA2157 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 54309928 Common - putative hydrolase PBPRA2774 35 COG1735 Php, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 54308585 Common - putative phosphate ABC transporter, permease protein PBPRA1392 233 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 54307542 Common rplD 50S ribosomal protein L4 PBPRA0321 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 54310294 Common - zinc-binding protein PBPRA3206 59 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 54310308 Common - putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase PBPRA3220 210 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 54308494 Common - putative outer membrane phospholipase A precursor PBPRA1301 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 54308108 Common - putative flagellar hook-associated protein 2 PBPRA0915 99 COG1345 FliD, Flagellar capping protein Cell motility and secretion 54309504 Common - hydroxyethylthiazole kinase PBPRA2337 77 COG2145 ThiM, Hydroxyethylthiazole kinase, sugar kinase family Coenzyme metabolism 54309636 Common - putative tRNA-(MSIO[6]A)-hydroxylase PBPRA2472 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 54307726 Common - putative ABC-type oligopeptide transport system, ATPase component PBPRA0521 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 54310207 Nonpathogen - hypothetical protein PBPRA3110 1 None None None 54309593 Common - putative transposase PBPRA2428 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309755 Common - putative 2,4-dienoyl-CoA reductase PBPRA2594 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 54308822 Common - hypothetical recombinase PBPRA1629 47 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 54309253 Common - hypothetical protein PBPRA2069 4 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 54307637 Common leuO leucine transcriptional activator PBPRA0423 151 COG0583 LysR, Transcriptional regulator Transcription 54307809 Common - putative cell division protein FtsH PBPRA0604 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 54307485 Common - Putative transcriptional regulator PBPRA0264 40 COG1695 COG1695, Predicted transcriptional regulators Transcription 54307550 Common - putative ribosomal protein S17 PBPRA0329 237 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 54308647 Nonpathogen - hypothetical protein PBPRA1454 1 None None None 54307404 Common greB transcription elongation factor GreB PBPRA0183 202 COG0782 GreA, Transcription elongation factor Transcription 54309383 Nonpathogen - hypothetical protein PBPRA2205 1 None None None 54308526 Common - hypothetical protein PBPRA1333 6 None None None 54310095 Common - hypothetical Tn5 transposase PBPRA2979 30 None None None 54309043 Common - putative transposase PBPRA1857 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307588 Common - hypothetical protein PBPRA0374 7 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 161936313 Common - 50S ribosomal protein L25 PBPRA1534 109 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 54310031 Common - hypothetical protein PBPRA2906 21 COG3249 COG3249, Uncharacterized protein conserved in bacteria Function unknown 54308886 Common - putative transposase, IS91 family PBPRA1697 31 None None None 54310247 Nonpathogen - hypothetical protein PBPRA3150 1 None None None 54307580 Common - putative transposase and inactivated derivative PBPRA0366 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309179 Common - hypothetical protein PBPRA1994 231 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 54308343 Common - putative cold shock-like protein CspD PBPRA1150 178 COG1278 CspC, Cold shock proteins Transcription 54310374 Common - hypothetical MSHA biogenesis protein MshI PBPRA3286 11 None None None 54310087 Common - hypothetical protein PBPRA2971 17 None None None 54310220 Common - putative phosphoglycerate dehydrogenase PBPRA3123 225 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 54310649 Common - F0F1 ATP synthase subunit I PBPRA3611 13 COG3312 AtpI, F0F1-type ATP synthase, subunit I Energy production and conversion 54309643 Common - hypothetical protein PBPRA2479 40 COG3152 COG3152, Predicted membrane protein Function unknown 54308095 Common flgC flagellar basal body rod protein FlgC PBPRA0902 123 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 54309256 Nonpathogen - hypothetical protein PBPRA2072 1 None None None 54307702 Common - hypothetical Tn5 transposase PBPRA0489 11 None None None 54310534 Common - putative type II secretory pathway, component EpsD PBPRA3481 142 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 54308128 Common flhB flagellar biosynthesis protein FlhB PBPRA0935 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 54309115 Common - putative xanthine/uracil permease PBPRA1929 134 COG2252 COG2252, Permeases General function prediction only 54308129 Common flhA flagellar biosynthesis protein A PBPRA0936 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 54309537 Common - putative transposase PBPRA2370 19 None None None 54308319 Common moaD molybdopterin synthase small subunit PBPRA1126 65 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 54309068 Nonpathogen - hypothetical protein PBPRA1882 1 None None None 54308312 Common - putative repressor protein luxO PBPRA1119 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54308849 Common - putative glutathione S-transferase PBPRA1656 28 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 54307476 Common - hypothetical cell division protein PBPRA0255 47 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 54308959 Common - hypothetical protein PBPRA1770 4 None None None 54309231 Common - Putative sodium:alanine symporter family protein PBPRA2047 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 54310577 Common cyaY frataxin-like protein PBPRA3524 44 COG1965 CyaY, Protein implicated in iron transport, frataxin homolog Inorganic ion transport and metabolism 54309521 Common - hypothetical protein PBPRA2354 143 COG0730 COG0730, Predicted permeases General function prediction only 54307557 Common rplR 50S ribosomal protein L18 PBPRA0336 119 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 54309196 Common - molybdopterin biosynthesis protein MoeB PBPRA2011 223 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 54310526 Common - hypothetical general secretion pathway protein L PBPRA3473 25 COG3297 PulL, Type II secretory pathway, component PulL Intracellular trafficking and secretion 54310552 Common - hypothetical protein PBPRA3499 23 COG3078 COG3078, Uncharacterized protein conserved in bacteria Function unknown 54308974 Common - hypothetical protein PBPRA1785 3 None None None 54307430 Common - putative lipopolysaccharide biosynthesis protein PBPRA0209 112 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 54309306 Common - hypothetical protein PBPRA2126 137 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54309199 Common - hypothetical oligopeptide ABC transporter, periplasmic oligopeptide-binding protein PBPRA2014 209 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 54309553 Common - hypothetical Rec2-related protein PBPRA2386 179 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 54307293 Common glyQ glycyl-tRNA synthetase subunit alpha PBPRA0056 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 54307506 Common - phosphoglycolate phosphatase PBPRA0285 191 COG0546 Gph, Predicted phosphatases General function prediction only 54309931 Common - hypothetical phosphotransferase systemcellobiose-specific component IIC PBPRA2777 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 54308056 Common - glucose-specific PTS system component PBPRA0861 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 54309143 Nonpathogen - hypothetical transposase PBPRA1957 3 None None None 54310187 Common rnc ribonuclease III PBPRA3089 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 54307328 Common thiE thiamine-phosphate pyrophosphorylase PBPRA0107 206 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 54307732 Common - hypothetical 16S RNA G1207 methylase RsmC PBPRA0527 102 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 54308541 Common - hypothetical protein PBPRA1348 17 COG3969 COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase General function prediction only 54309491 Common - Putative sulfate permease PBPRA2324 150 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 54309904 Common - putative formate acetyltransferase PBPRA2750 57 COG1882 PflD, Pyruvate-formate lyase Energy production and conversion 54308673 Common - putative alcohol dehydrogenase class III PBPRA1480 194 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 54309163 Common - putative transposase PBPRA1978 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309330 Nonpathogen - hypothetical protein PBPRA2150 1 None None None 54308038 Common - putative D,D-carboxypeptidase-related protein PBPRA0843 24 COG1876 VanY, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 54309685 Common - Hypothetical nitrate transporter PBPRA2521 156 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 54309417 Common - Hypothetical merR protein PBPRA2249 100 COG0789 SoxR, Predicted transcriptional regulators Transcription 54308185 Common - hypothetical transcriptional regulator PBPRA0992 47 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54310053 Common - putative peptide ABC transporter,permease protein PBPRA2937 220 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 54309122 Common - hypothetical ATP-binding component of ABC transporter PBPRA1936 246 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 54309333 Common - succinylglutamate desuccinylase PBPRA2153 24 COG2988 COG2988, Succinylglutamate desuccinylase Amino acid transport and metabolism 54309977 Common - hypothetical SoxR, transcriptional regulators PBPRA2823 130 COG0789 SoxR, Predicted transcriptional regulators Transcription 54310300 Common ftsA cell division protein FtsA PBPRA3212 187 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 54307827 Common - putative ribosomal-protein-alanine acetyltransferase PBPRA0624 189 COG0456 RimI, Acetyltransferases General function prediction only 54309600 Common - hypothetical protein PBPRA2435 42 COG3768 COG3768, Predicted membrane protein Function unknown 54308617 Common - hypothetical protein PBPRA1424 3 None None None 54307907 Common - putative transposase PBPRA0712 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308992 Common - hypothetical protein PBPRA1805 50 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 54309346 Common - hypothetical protein PBPRA2167 43 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 54307963 Common - hypothetical metal-dependent hydrolase PBPRA0768 5 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 54310324 Common - putative 30S ribosomal subunit protein S9 PBPRA3236 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 54307812 Common - putative protein export-membrane protein PBPRA0607 72 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 54308453 Common - putative nitrite reductase, Fe-S protein (NrfC) PBPRA1260 164 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 54310626 Common - Putative FixG-related protein PBPRA3588 80 COG0348 NapH, Polyferredoxin Energy production and conversion 54309344 Nonpathogen - hypothetical protein PBPRA2164 2 None None None 54307276 Common flgL flagellar hook-associated protein FlgL PBPRA0039 99 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 54309137 Common - Putative haemagglutinin associated protein PBPRA1951 115 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 54308149 Common - Hypothetical VacJ lipoprotein PBPRA0956 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 54307786 Common thyA thymidylate synthase PBPRA0581 136 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 54308240 Common sdhB succinate dehydrogenase iron-sulfur subunit PBPRA1047 199 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 54310115 Common recC exonuclease V subunit gamma PBPRA2999 67 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 54310452 Common alr alanine racemase PBPRA3385 199 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 54307238 Common - flavodoxin PBPRA0001 75 COG0716 FldA, Flavodoxins Energy production and conversion 54307679 Common - putative xylose operon regulatory protein PBPRA0466 34 COG1609 PurR, Transcriptional regulators Transcription 54309447 Common - putative TRAP-type C4-dicarboxylate transport system, large permease component PBPRA2279 124 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 54308109 Nonpathogen - Hypothetical flagellar rod protein FlaI PBPRA0916 1 None None None 54310044 Common - hypothetical SAM-dependent methyltransferase PBPRA2919 54 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 54310646 Common - F0F1 ATP synthase subunit B PBPRA3608 126 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 54310386 Common - putative transposase and inactivated derivative PBPRA3299 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309481 Common - putative FAD-dependent dehydrogenase PBPRA2314 81 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 54310395 Common - putative ElaA-like protein PBPRA3315 76 COG2153 ElaA, Predicted acyltransferase General function prediction only 54307398 Common - predicted gluconate transport-associated protein PBPRA0177 68 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 54308927 Common - hypothetical protein PBPRA1738 97 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 54307356 Common - hypothetical protein PBPRA0135 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 54309879 Common - putative phosphotransferase system fructose-specific component IIB PBPRA2719 68 COG1445 FrwB, Phosphotransferase system fructose-specific component IIB Carbohydrate transport and metabolism 54309944 Common - putative outer membrane protein PBPRA2790 20 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 54309895 Common - putative amino acid ABC transporter, periplasmic amino acid-binding protein PBPRA2741 171 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 54307605 Common - malate dehydrogenase PBPRA0391 197 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 54310062 Common - hypothetical protein PBPRA2946 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54310606 Common - putative transposase and inactivated derivative PBPRA3554 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309368 Common - putative carrier/transport protein PBPRA2190 110 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 54309548 Common - putative sodium/dicarboxylate symporter PBPRA2381 159 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 54309410 Common - putative transcriptional regulator, GntR family PBPRA2242 135 COG1802 GntR, Transcriptional regulators Transcription 54308052 Common - hypothetical protein PBPRA0857 7 None None None 54310466 Common - putative 3-phenylpropionic acid transporter PBPRA3400 74 None None None 54310156 Common - hypothetical protein PBPRA3046 38 COG4764 COG4764, Uncharacterized protein conserved in bacteria Function unknown 54307716 Common - putative transposase PBPRA0511 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307734 Common - glutamate-1-semialdehyde aminotransferase PBPRA0529 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 54308685 Common - hypothetical protein PBPRA1492 2 None None None 54308326 Common - Putative oligopeptide ABC transporter PBPRA1133 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54308634 Common - hypothetical protein PBPRA1441 9 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 54309176 Common - dihydropyrimidinase PBPRA1991 209 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 54310005 Common - hypothetical protein PBPRA2880 151 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 54309918 Common - putative formate-tetrahydrofolate ligase PBPRA2764 89 COG2759 MIS1, Formyltetrahydrofolate synthetase Nucleotide transport and metabolism 54307925 Common - putative ABC-type phosphate transport system,ATPase component PBPRA0730 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 54308304 Common - hypothetical protein PBPRA1111 99 COG1801 COG1801, Uncharacterized conserved protein Function unknown 54309429 Common - allantoicase PBPRA2261 15 COG4266 Alc, Allantoicase Nucleotide transport and metabolism 54308029 Common - hypothetical transposase PBPRA0834 21 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308214 Common - ToxS PBPRA1021 2 None None None 54310495 Common nudC NADH pyrophosphatase PBPRA3429 113 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 54308394 Common - hypothetical DNA polymerase III, delta prime subunit PBPRA1201 214 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 54310335 Common - hypothetical protein PBPRA3247 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 54308401 Common - DNA-binding transcriptional dual regulator PBPRA1208 175 COG0583 LysR, Transcriptional regulator Transcription 54308506 Common - hypothetical protein PBPRA1313 9 None None None 54309721 Common - Na(+)-translocating NADH-quinone reductase subunit E PBPRA2560 76 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 54308937 Common - putative ATP-dependent RNA helicase, DEAD boxfamily PBPRA1748 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 54309843 Common - hypothetical protein PBPRA2683 32 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 54309887 Common - hypothetical protein PBPRA2733 9 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 54308279 Common - imidazole glycerol phosphate synthase subunit HisF PBPRA1086 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 54309146 Common - hypothetical protein PBPRA1960 9 COG3713 OmpV, Outer membrane protein V Cell envelope biogenesis, outer membrane 54309296 Common - putative ABC-type uncharacterized transport system ATPase component PBPRA2116 249 COG4136 COG4136, ABC-type uncharacterized transport system, ATPase component General function prediction only 54307941 Common secF preprotein translocase subunit SecF PBPRA0746 214 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 54310402 Common - hypothetical protein PBPRA3322 2 None None None 54307628 Common - hypothetical protein PBPRA0414 24 None None None 54310104 Common - hypothetical protein PBPRA2988 71 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 54308165 Common - Putative ATP-binding component of a transport system PBPRA0972 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 54310642 Common - F0F1 ATP synthase subunit beta PBPRA3604 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 54307802 Common carB carbamoyl phosphate synthase large subunit PBPRA0597 237 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 54308268 Common - long-chain-fatty-acid--CoA ligase PBPRA1075 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54310445 Common - fumarate reductase flavoprotein subunit PBPRA3378 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 54308958 Common - hypothetical N6-adenine-specific DNA methylase PBPRA1769 160 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 54308735 Common - putative arsenical pump-driving ATPase(Arsenite-translocating ATPase) PBPRA1542 84 COG0003 ArsA, Predicted ATPase involved in chromosome partitioning Cell division and chromosome partitioning 54308270 Common minE cell division topological specificity factor MinE PBPRA1077 75 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 54310369 Common - hypothetical protein PBPRA3281 26 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 54308116 Common fliF flagellar MS-ring protein PBPRA0923 124 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 54308780 Common - Putative transposase PBPRA1587 30 COG5433 COG5433, Transposase DNA replication, recombination, and repair 54308863 Common - hypothetical outer membrane receptor PBPRA1670 104 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 54308205 Common - OmpH porin-like protein H precursor PBPRA1012 16 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 161936330 Common - aerobic respiration control sensor protein ArcB PBPRA0545 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54308983 Common - hypothetical protein PBPRA1796 35 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 54307389 Common - putative cytochrome c oxidase, subunit I PBPRA0168 174 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 54308856 Common - hypotetical anthranilate synthase PBPRA1663 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 54309407 Common - hypothetical protein PBPRA2239 13 COG4720 COG4720, Predicted membrane protein Function unknown 54309617 Common - putative 3-phosphoshikimate 1-carboxyvinyltransferase PBPRA2452 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 54307931 Common - Putative transcriptional regulator, LysR family PBPRA0736 183 COG0583 LysR, Transcriptional regulator Transcription 54309564 Common - hypothetical protein PBPRA2397 20 COG3150 COG3150, Predicted esterase General function prediction only 54307245 Common dnaA chromosomal replication initiation protein PBPRA0008 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 54310360 Common - hypothetical protein PBPRA3272 9 None None None 54308306 Common - hypothetical protein PBPRA1113 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 54310174 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PBPRA3076 188 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 54309326 Common - putative transcriptional regulator PBPRA2146 125 COG1609 PurR, Transcriptional regulators Transcription 54310603 Common - Transposase and inactivated derivatives PBPRA3551 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308553 Nonpathogen - hypothetical protein PBPRA1360 1 None None None 54310291 Common - putative leader peptidase PilD PBPRA3203 128 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 54307576 Nonpathogen - hypothetical protein PBPRA0355 1 None None None 54308507 Nonpathogen - hypothetical protein PBPRA1314 2 None None None 54310024 Common - hypothetical glycine cleavage system transcriptional repressor PBPRA2899 33 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 54310190 Common - hypothetical protein PBPRA3092 40 COG3086 RseC, Positive regulator of sigma E activity Signal transduction mechanisms 54309528 Common - Hypothetical transcriptional regulator, LysR family PBPRA2361 178 COG0583 LysR, Transcriptional regulator Transcription 54308778 Common - hypothetical protein PBPRA1585 5 None None None 54310514 Common - hypothetical RNA-binding protein PBPRA3461 65 COG0724 COG0724, RNA-binding proteins (RRM domain) General function prediction only 54308557 Common - hypothetical protein PBPRA1364 27 COG2606 EbsC, Uncharacterized conserved protein Function unknown 54307641 Common - putative LuxZ PBPRA0427 125 COG1802 GntR, Transcriptional regulators Transcription 54309797 Common clpX ATP-dependent protease ATP-binding subunit PBPRA2636 227 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 54310348 Common - putative magnesium transporter PBPRA3260 170 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 54308885 Common - hypothetical protein PBPRA1696 12 COG3668 ParE, Plasmid stabilization system protein General function prediction only 54309579 Common - putative L-serine dehydratase 1 PBPRA2413 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 54309674 Common - hypothetical protein PBPRA2510 135 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 54308090 Common - putative negative regulator of flagellin synthesis FlgM PBPRA0897 9 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 54308203 Common - hypothetical primosomal replication protein N`` PBPRA1010 16 COG3923 PriC, Primosomal replication protein N'' DNA replication, recombination, and repair 54310493 Common - hypothetical protein PBPRA3427 62 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 54310573 Common xerC site-specific tyrosine recombinase XerC PBPRA3520 229 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 54308147 Common - hypothetical cytochrome c-type biogenesis protein PBPRA0954 91 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 54308539 Nonpathogen - hypothetical protein PBPRA1346 4 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 54308573 Common - putative heat shock protein HslJ PBPRA1380 5 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 54308793 Nonpathogen - hypothetical protein PBPRA1600 1 None None None 54308384 Common rpmF 50S ribosomal protein L32 PBPRA1191 84 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 54309772 Common - putative preprotein translocase SecA PBPRA2611 6 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 54310070 Common rnhB ribonuclease HII PBPRA2954 238 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 54309981 Common - hypothetical protein PBPRA2832 97 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 54309488 Common - putative MFS transporter PBPRA2321 144 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54310212 Common - hypothetical protein PBPRA3115 14 None None None 54310262 Common - putative 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase PBPRA3174 203 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 54308067 Common - hypothetical protein PBPRA0872 12 None None None 54308231 Common - hypothetical esterase/lipase ybfF PBPRA1038 178 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54308114 Common - putative response regulator PBPRA0921 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54310579 Common cyaA adenylate cyclase PBPRA3526 25 COG3072 CyaA, Adenylate cyclase Nucleotide transport and metabolism 54309439 Common - hypothetical protein PBPRA2271 5 None None None 54308605 Common - Putative transcriptional regulator, LysR family PBPRA1412 165 COG0583 LysR, Transcriptional regulator Transcription 54307916 Common - putative DNA-binding response regulator PhoB PBPRA0721 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54307779 Common - putative oxidoreductase Tas, aldo/keto reductase family PBPRA0574 199 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 54308003 Common - flagellar motor protein PomA PBPRA0808 106 COG1291 MotA, Flagellar motor component Cell motility and secretion 54308431 Common - Predicted transcriptional regulator PBPRA1238 7 None None None 54310139 Common - hypothetical protein PBPRA3029 4 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 54308598 Common - hypothetical protein PBPRA1405 9 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54308607 Nonpathogen - hypothetical protein PBPRA1414 1 None None None 54307415 Common - hypothetical protein PBPRA0194 23 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 54307307 Common - Transposase and inactivated derivatives PBPRA0080 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307933 Common - isocitrate lyase PBPRA0738 128 COG2224 AceA, Isocitrate lyase Energy production and conversion 54309668 Common - hypothetical protein PBPRA2504 5 COG4961 TadG, Flp pilus assembly protein TadG Intracellular trafficking and secretion 54308034 Common - gamma-glutamyl kinase PBPRA0839 189 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 54309615 Common rpsA 30S ribosomal protein S1 PBPRA2450 216 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 54307324 Common ccrB camphor resistance protein CrcB PBPRA0103 88 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 54309072 Common - hypothetical drug transport transmembrane protein PBPRA1886 50 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 54308475 Common - hypothetical protein PBPRA1282 98 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 54307428 Common - putative nucleotide sugar epimerase PBPRA0207 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54307460 Common - hypothetical protein PBPRA0239 53 COG2345 COG2345, Predicted transcriptional regulator Transcription 54307602 Common - putative TRAP-type uncharacterized transport system, fused permease component PBPRA0388 95 COG4666 COG4666, TRAP-type uncharacterized transport system, fused permease components General function prediction only 54307877 Common - hypothetical protein PBPRA0674 20 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 54309659 Common - hypothetical protein PBPRA2495 3 COG3745 CpaB, Flp pilus assembly protein CpaB Intracellular trafficking and secretion 54310218 Common - hypothetical 5-formyltetrahydrofolatecyclo-ligase-family protein PBPRA3121 186 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 54308624 Common - putative uridine phosphorylase PBPRA1431 96 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 54310634 Common - threonine dehydratase PBPRA3596 216 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 54309587 Common - putative transcriptional regulatory protein PhoP PBPRA2421 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54308704 Common - hypothetical protein PBPRA1511 5 None None None 54308851 Common - hypothetical protein PBPRA1658 14 COG1409 Icc, Predicted phosphohydrolases General function prediction only 54310013 Common - hypothetical protein PBPRA2888 201 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 54307903 Common - hypothetical type IV pilin PBPRA0700 3 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 54308591 Common - hypothetical protein PBPRA1398 7 None None None 161936339 Common glpX fructose 1,6-bisphosphatase II PBPRA0240 112 COG1494 GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins Carbohydrate transport and metabolism 54307469 Common glpK glycerol kinase PBPRA0248 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 54307578 Common - Putative membrane protein of ExoQ family, involved in exopolysaccharide production PBPRA0357 35 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 54309168 Nonpathogen - hypothetical transcriptional regulator PBPRA1983 1 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 54309324 Common - hypothetical protein PBPRA2144 58 COG2985 COG2985, Predicted permease General function prediction only 54308295 Common - hypothetical protein PBPRA1102 158 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 54309848 Common - putative capsular polysaccharide transport protein PBPRA2688 126 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 54307681 Common - putative 1-acyl-sn-glycerol-3-phosphateacyltransferase PBPRA0468 116 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 54309856 Common - putative transporting ATPase PBPRA2696 31 COG3101 COG3101, Uncharacterized protein conserved in bacteria Function unknown 54309716 Common - hypothetical protein PBPRA2555 13 COG3790 COG3790, Predicted membrane protein Function unknown 54310259 Common - putative DnaK suppressor protein PBPRA3171 140 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 54309002 Common - putative ATP-dependent exoDNAse (exonuclease V), alpha subunit PBPRA1815 135 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 54307685 Nonpathogen - hypothetical protein PBPRA0472 2 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 54309342 Nonpathogen - hypothetical protein PBPRA2162 1 None None None 54308918 Common - 2-amino-3-ketobutyrate coenzyme A ligase PBPRA1729 191 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 54307680 Common - putative xylulose kinase PBPRA0467 183 COG1070 XylB, Sugar (pentulose and hexulose) kinases Carbohydrate transport and metabolism 54307830 Common - putative glycogen operon protein PBPRA0627 166 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 54309033 Common - hypothetical protein PBPRA1847 13 COG3965 COG3965, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 54309786 Common - menaquinone-specific isochorismate synthase PBPRA2625 222 COG1169 MenF, Isochorismate synthase Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54309264 Common - galactokinase PBPRA2080 91 COG0153 GalK, Galactokinase Carbohydrate transport and metabolism 54308784 Common - hypothetical protein PBPRA1591 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308308 Common - hypothetical methyl-accepting chemotaxis protein PBPRA1115 118 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54310199 Common - hypothetical protein PBPRA3101 107 COG2606 EbsC, Uncharacterized conserved protein Function unknown 54307856 Common - hypothetical protein PBPRA0653 12 None None None 54308904 Common - hypothetical protein PBPRA1715 10 None None None 54307440 Common - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase PBPRA0219 89 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 54309724 Common - putative RnfD-related protein PBPRA2563 76 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 54309304 Common - hypothetical protein PBPRA2124 6 None None None 54310393 Common cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein PBPRA3313 128 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 54308754 Common - hypothetical protein PBPRA1561 19 None None None 54308496 Common - hypothetical integrase for prophage CP-933V PBPRA1303 80 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 54307511 Common - putative arginine/ornithine succinyltransferase PBPRA0290 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 54308690 Common - DNA-binding response regulator in two-component regulatory system with TorS PBPRA1497 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54308010 Common - putative ampG protein PBPRA0815 104 None None None 161936325 Common rdgC recombination associated protein PBPRA0718 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 54307890 Common - hypothetical protein PBPRA0687 16 COG3854 SpoIIIAA, ncharacterized protein conserved in bacteria Function unknown 54308180 Common - hypothetical two component sensor protein PBPRA0987 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54308535 Nonpathogen - hypothetical protein PBPRA1342 1 None None None 54309654 Common - tryptophan synthase subunit beta PBPRA2490 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 54310121 Common - hypothetical protein PBPRA3005 2 None None None 54309276 Nonpathogen - hypothetical transposase PBPRA2096 3 None None None 54309532 Common - hypothetical protein PBPRA2365 188 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 54310042 Common - DNA polymerase III subunit epsilon PBPRA2917 186 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 54308083 Nonpathogen - hypothetical protein PBPRA0889 1 None None None 54307514 Common - cAMP-regulatory protein PBPRA0293 168 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 54310118 Common - hypothetical protein PBPRA3002 31 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 54308254 Common - hypothetical diadenosine tetraphosphate hydrolase PBPRA1061 66 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 54309933 Common - hypothetical protein PBPRA2779 12 None None None 54308643 Common - hypothetical protein PBPRA1450 13 None None None 54309881 Common - putative multidrug resistance protein PBPRA2721 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 54308132 Common fliA flagellar biosynthesis sigma factor PBPRA0939 216 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 54307663 Common tolC outer membrane channel protein PBPRA0450 136 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 54307774 Common - putative peptide chain release factor 2 PBPRA0569 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 54310273 Common - putative ammonium transporter PBPRA3185 201 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 54309992 Common - hypothetical protein PBPRA2843 31 COG3094 COG3094, Uncharacterized protein conserved in bacteria Function unknown 54307888 Common - hypothetical protein PBPRA0685 212 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54310477 Common fis DNA-binding protein Fis PBPRA3411 97 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 54308338 Common - adenylosuccinate lyase PBPRA1145 231 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 54310595 Common - ATP-dependent RNA helicase RhlB PBPRA3542 239 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 54308191 Common - hypothetical protein PBPRA0998 33 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 54309104 Common - putative glyoxalase family protein PBPRA1918 39 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 54309741 Common - putative Na+/H+ antiporter PBPRA2580 55 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 54308040 Common - hypothetical arsenate reductase PBPRA0845 104 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 54309746 Common - nucleoid-associated protein NdpA PBPRA2585 31 COG3081 COG3081, Nucleoid-associated protein General function prediction only 54307694 Common - hypothetical transcriptional regulator, MarR family PBPRA0481 64 COG1846 MarR, Transcriptional regulators Transcription 54308979 Nonpathogen - hypothetical protein PBPRA1790 3 None None None 54308801 Common - Hypothetical transposase PBPRA1608 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307454 Common cpxP periplasmic repressor CpxP PBPRA0233 21 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 54309694 Common tnaA tryptophanase PBPRA2532 44 COG3033 TnaA, Tryptophanase Amino acid transport and metabolism 54309245 Common - hypothetical polypeptide deformylase PBPRA2061 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 54308869 Common - hypothetical protein PBPRA1680 19 None None None 54308689 Common - hypotetical trimethylamine N-oxide reductase,cytochrome c-type subunit PBPRA1496 52 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 54308821 Nonpathogen - hypothetical protein PBPRA1628 1 None None None 54309782 Common - O-succinylbenzoic acid--CoA ligase PBPRA2621 210 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54310541 Common - D-tyrosyl-tRNA deacylase PBPRA3488 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 54307624 Common - hypothetical protein PBPRA0410 198 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 54307772 Common - hypothetical protein PBPRA0567 59 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 54309222 Common - putative ABC transporter PBPRA2037 6 None None None 54310067 Common - hypothetical cell cycle protein MesJ PBPRA2951 210 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 54308812 Nonpathogen - hypothetical protein PBPRA1619 2 None None None 54310558 Common - hypothetical protein PBPRA3505 6 COG3375 COG3375, Uncharacterized conserved protein Function unknown 54309683 Common - putative alcohol dehydrogenase PBPRA2519 175 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 54308021 Common - Na(+)-translocating NADH-quinone reductase subunit D PBPRA0826 76 COG1347 NqrD, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD Energy production and conversion 54310612 Common - Hypothetical phosphoribosylaminoimidazole carboxylase, catalytic subunit PBPRA3574 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 54308764 Common - hypothetical protein PBPRA1571 23 COG3596 COG3596, Predicted GTPase General function prediction only 54308565 Common glpA sn-glycerol-3-phosphate dehydrogenase subunit A PBPRA1372 167 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 54309150 Common - hypothetical D-alanine-D-alanine ligase B PBPRA1964 213 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 54310038 Common gmhA phosphoheptose isomerase PBPRA2913 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 54308179 Common - Putative two component response regulator transcription regulator protein PBPRA0986 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54309376 Common - putative chitinase PBPRA2198 43 COG3325 ChiA, Chitinase Carbohydrate transport and metabolism 54308860 Common - putative Beta-ketoacyl synthase PBPRA1667 213 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 54307368 Common - hypothetical protein PBPRA0147 36 COG3714 COG3714, Predicted membrane protein Function unknown 54308086 Common - hypothetical protein PBPRA0893 11 None None None 54308651 Common - omega-3 polyunsaturated fatty acid synthase PfaC PBPRA1458 209 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 54307540 Common rpsJ 30S ribosomal protein S10 PBPRA0319 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 54308444 Common - hypothetical protein PBPRA1251 67 COG1355 COG1355, Predicted dioxygenase General function prediction only 54307711 Common - putative transcription regulator LacI family PBPRA0499 126 COG1609 PurR, Transcriptional regulators Transcription 54308344 Common clpS ATP-dependent Clp protease adaptor protein ClpS PBPRA1151 122 COG2127 COG2127, Uncharacterized conserved protein Function unknown 54307548 Common rplP 50S ribosomal protein L16 PBPRA0327 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 54309477 Common - putative transposase PBPRA2310 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308157 Common - hypothetical phosphohistidine phosphatase PBPRA0964 56 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 54307800 Common - dihydrodipicolinate reductase PBPRA0595 216 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 54307980 Nonpathogen - hypothetical protein PBPRA0785 1 None None None 54308725 Nonpathogen - hypothetical protein PBPRA1532 1 None None None 54307989 Common - hypothetical protein PBPRA0794 37 COG1284 COG1284, Uncharacterized conserved protein Function unknown 54309475 Common - hypothetical transcriptional regulator PBPRA2308 207 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 54309079 Common - putative molybdopterin biosynthesis MoeAprotein PBPRA1893 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 54307878 Common - hypothetical protein PBPRA0675 66 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 54308943 Nonpathogen - hypothetical protein PBPRA1754 1 None None None 54309864 Common - putative transposase PBPRA2704 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307696 Common valS valyl-tRNA synthetase PBPRA0483 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54308511 Common - hypotethical transposase PBPRA1318 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307335 Common - hypothetical protein PBPRA0114 57 COG2510 COG2510, Predicted membrane protein Function unknown 54308632 Common - hypothetical protein PBPRA1439 175 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54308422 Common - hypothetical protein PBPRA1229 188 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 54308432 Common - putative oxidoreductase, aldo/keto reductase 2 PBPRA1239 176 COG4989 COG4989, Predicted oxidoreductase General function prediction only 54309242 Common - putative b-type cytochrome PBPRA2058 45 COG3658 COG3658, Cytochrome b Energy production and conversion 54308713 Common - hypothetical protein PBPRA1520 32 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 54309906 Common pflA pyruvate formate lyase-activating enzyme 1 PBPRA2752 113 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 54310482 Common - hypothetical protein PBPRA3416 52 COG3123 COG3123, Uncharacterized protein conserved in bacteria Function unknown 54308324 Common - putative oligopeptide ABC transporter,periplasmic oligopeptide-binding protein PBPRA1131 212 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 54308695 Common - hypothetical protein PBPRA1502 2 None None None 54307533 Common - hypothetical protein PBPRA0312 32 COG2168 DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur Inorganic ion transport and metabolism 54309790 Common - hypothetical protein PBPRA2629 39 COG3148 COG3148, Uncharacterized conserved protein Function unknown 54310209 Common - hypothetical protein PBPRA3112 22 COG2991 COG2991, Uncharacterized protein conserved in bacteria Function unknown 54310140 Common - hypothetical protein PBPRA3030 3 None None None 54308370 Common - hypothetical protein PBPRA1177 34 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 54309319 Common - hypothetical protein PBPRA2139 22 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 54307372 Common - hypothetical protein PBPRA0151 8 COG3776 COG3776, Predicted membrane protein Function unknown 54309390 Common - hypothetical alcohol dehydrogenase PBPRA2212 95 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 54310281 Common - putative methyl-accepting chemotaxis protein PBPRA3193 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54307759 Common - threonine synthase PBPRA0554 198 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 54307552 Common rplX 50S ribosomal protein L24 PBPRA0331 190 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 54309431 Common - putative polysaccharide deacetylase family protein PBPRA2263 77 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 54307561 Common secY preprotein translocase subunit SecY PBPRA0340 236 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 54309535 Nonpathogen - hypothetical protein PBPRA2368 2 None None None 54308075 Common - Hypothetical transposase PBPRA0881 69 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310341 Common - hypotetical protein yhbN precursor PBPRA3253 59 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 54308225 Common - putative PTS permease for N-acetylglucosamine and glucose PBPRA1032 51 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 54310464 Common - putative sodium/solute symporter PBPRA3398 152 COG4147 DhlC, Predicted symporter General function prediction only 54309234 Nonpathogen - hypothetical protein PBPRA2050 1 None None None 54309463 Common - hypothetical citrate (pro-3S)-lyase ligase PBPRA2295 25 COG3053 CitC, Citrate lyase synthetase Energy production and conversion 54307300 Common fadA 3-ketoacyl-CoA thiolase PBPRA0063 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 54307634 Common - putative transcriptional regulator PBPRA0420 36 COG1309 AcrR, Transcriptional regulator Transcription 54308079 Common - hypothetical protein PBPRA0885 54 COG1479 COG1479, Uncharacterized conserved protein Function unknown 54310501 Common rplA 50S ribosomal protein L1 PBPRA3435 246 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 54309020 Common - putative cytochrome c oxidase, subunit CcoP PBPRA1834 80 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 54307658 Common - hypothetical protein PBPRA0445 58 COG3025 COG3025, Uncharacterized conserved protein Function unknown 54308266 Common - hypothetical starvation-inducible outer membrane lipoprotein PBPRA1073 30 COG3065 Slp, Starvation-inducible outer membrane lipoprotein Cell envelope biogenesis, outer membrane 54308962 Common - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase PBPRA1773 84 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 54309517 Common - hypothetical outer membrane protein PBPRA2350 63 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 54307640 Common - acetolactate synthase III small subunit PBPRA0426 191 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 54308831 Common - hypothetical protein PBPRA1638 138 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 54308873 Common - thiopurine S-methyltransferase PBPRA1684 33 None None None 54308847 Common - hypothetical protein PBPRA1654 17 COG0456 RimI, Acetyltransferases General function prediction only 54308073 Nonpathogen - hypothetical protein PBPRA0879 1 None None None 54308964 Common - hypothetical protein PBPRA1775 17 COG3120 COG3120, Uncharacterized protein conserved in bacteria Function unknown 54308156 Common - putative peptidase, insulinase family PBPRA0963 195 COG1025 Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like Posttranslational modification, protein turnover, chaperones 54307778 Common - hypothetical protein PBPRA0573 2 None None None 54307612 Common - hypothetical protein PBPRA0398 45 COG2966 COG2966, Uncharacterized conserved protein Function unknown 54309090 Nonpathogen - hypothetical protein PBPRA1904 1 None None None 54307528 Common - hypothetical protein PBPRA0307 52 COG2319 COG2319, FOG: WD40 repeat General function prediction only 54309578 Common - putative serine transporter PBPRA2412 38 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 54309449 Common - putative TRAP-type C4-dicarboxylate transport system, periplasmic component PBPRA2281 102 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 54310487 Common - hypothetical protein PBPRA3421 2 None None None 54307997 Common - thiamine monophosphate kinase PBPRA0802 203 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 54309433 Common - putative transporter PBPRA2265 165 COG2252 COG2252, Permeases General function prediction only 54308683 Common - hypothetical protein PBPRA1490 12 None None None 54309859 Common - hypothetical nucleoside-diphosphate-sugar epimerase PBPRA2699 211 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54308921 Common - hypothetical protein PBPRA1732 9 None None None 54308719 Common - hypothetical protein PBPRA1526 23 COG1901 COG1901, Uncharacterized conserved protein Function unknown 54308310 Common ruvB Holliday junction DNA helicase B PBPRA1117 231 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 54307796 Common ileS isoleucyl-tRNA synthetase PBPRA0591 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54310554 Common - putative cytochrome c4 PBPRA3501 60 COG2863 COG2863, Cytochrome c553 Energy production and conversion 54309688 Common - putative uroporphyrin-III C-methyltransferase PBPRA2524 204 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 54309950 Common - hypothetical protein PBPRA2796 12 None None None 54308430 Common - hypothetical protein PBPRA1237 13 None None None 54307934 Common - hypothetical protein PBPRA0739 33 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 54310258 Common - sugar fermentation stimulation protein A PBPRA3170 107 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 54309112 Common - hypothetical paraquat-inducible protein B PBPRA1926 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 54308009 Common - putative outer membrane protein OmpK PBPRA0814 20 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 54308930 Common - hypothetical protein PBPRA1741 10 None None None 54308700 Nonpathogen - hypothetical protein PBPRA1507 1 None None None 54308710 Common - putative prolyl aminopeptidase PBPRA1517 66 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54308388 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase PBPRA1195 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 54307318 Common - putative ATP-dependent DNA helicase Rep PBPRA0091 229 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 54309841 Common - hypothetical glycosyl transferase PBPRA2681 12 None None None 54310276 Common - putative sugar diacid utilization regulator PBPRA3188 43 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 54307652 Common cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase PBPRA0439 212 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 54309022 Common - putative cation transport ATPase, E1-E2 family PBPRA1836 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 54309825 Common - hypothetical undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase PBPRA2665 148 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 54310099 Common - hypothetical protein PBPRA2983 6 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54307457 Common - putative 5-carboxymethyl-2-hydroxymuconate delta isomerase PBPRA0236 35 COG3232 HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase Amino acid transport and metabolism 54308167 Common - hypothetical lipoprotein-related protein PBPRA0974 31 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 54309781 Common - Hypothetical acyltransferase protein PBPRA2620 178 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 54309764 Common - hypothetical protein PBPRA2603 63 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 54309566 Common - hypothetical protein PBPRA2400 40 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 54308805 Common - hypothetical protein PBPRA1612 2 None None None 54309773 Common - hypothetical protein PBPRA2612 44 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54309461 Common - putative citrate lyase, beta subunit PBPRA2293 112 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 54310362 Common - hypothetical pilin protein PBPRA3274 8 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 54308389 Common acpP acyl carrier protein PBPRA1196 209 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54309249 Common - hypothetical protein PBPRA2065 2 None None None 54310193 Common - RNA polymerase sigma factor RpoE PBPRA3095 174 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 54307574 Common - Putative glycosyltransferase PBPRA0353 219 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54309542 Common - hypothetical protein PBPRA2375 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309591 Common - hypothetical transposase PBPRA2426 16 None None None 54309955 Nonpathogen - hypothetical protein PBPRA2801 1 None None None 54308357 Common - recombination factor protein RarA PBPRA1164 218 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 54309852 Common - hypothetical protein PBPRA2692 22 None None None 54308089 Common - putative chaperone FlgN PBPRA0896 6 COG3418 COG3418, Flagellar biosynthesis/type III secretory pathway chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 54308066 Common - hypothetical protein PBPRA0871 45 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307366 Common - hypothetical protein PBPRA0145 7 None None None 54307976 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein PBPRA0781 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 54307805 Common - ompL_phopr porin-like protein L precursor PBPRA0600 25 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 54309212 Common - putative lipid A biosynthesis lauroylacyltransferase PBPRA2027 108 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 54310205 Common - hypothetical protein PBPRA3107 2 None None None 54308249 Common - hypothetical zinc ABC transporter, periplasmiczinc-binding protein PBPRA1056 149 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 54310593 Common rho transcription termination factor Rho PBPRA3540 201 COG1158 Rho, Transcription termination factor Transcription 54310232 Common - hypothetical protein PBPRA3135 26 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 54308438 Common - hypothetical protein PBPRA1245 9 None None None 54308347 Common - arginyl-tRNA-protein transferase PBPRA1154 85 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 54309141 Nonpathogen - putative Tn5 transposase PBPRA1955 4 None None None 54307547 Common rpsC 30S ribosomal protein S3 PBPRA0326 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 54308327 Common oppD oligopeptide transporter ATP-binding component PBPRA1134 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 161936289 Common aceF dihydrolipoamide acetyltransferase PBPRA3195 196 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 54308577 Common - hypothetical protein PBPRA1384 8 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 54309440 Common - putative hydroxypyruvate reductase PBPRA2272 86 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 54310559 Common - hypothetical protein PBPRA3506 82 COG1738 COG1738, Uncharacterized conserved protein Function unknown 54310041 Common - hypothetical protein PBPRA2916 12 None None None 54308811 Nonpathogen - hypothetical protein PBPRA1618 1 None None None 54307642 Common - pyruvate kinase PBPRA0428 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 54308335 Common - hypothetical protein PBPRA1142 102 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54308018 Common - Na(+)-translocating NADH-quinone reductase subunit A PBPRA0823 39 COG1726 NqrA, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA Energy production and conversion 54307787 Common - putative sodium-dependent phosphate pump NptA PBPRA0582 29 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 54307246 Common - DNA polymerase III subunit beta PBPRA0009 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 54309239 Common - putative PTS system, fructose-specific IIABC component PBPRA2055 136 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 54308748 Common - hypothetical secreted hydrolase PBPRA1555 50 COG5621 COG5621, Predicted secreted hydrolase General function prediction only 54308134 Common - putative chemotaxis protein CheZ PBPRA0941 45 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309182 Common - putative malate oxidoreductase PBPRA1997 192 COG0281 SfcA, Malic enzyme Energy production and conversion 54309322 Common - hypothetical protein PBPRA2142 212 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 54308761 Common - hypothetical protein PBPRA1568 11 None None None 161936328 Common - ssDNA exonuclease RecJ PBPRA0568 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 54307736 Common - putative HesB family protein PBPRA0531 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 54308824 Common - Hypothetical acyltransferase family protein PBPRA1631 34 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 161936282 Common prmA ribosomal protein L11 methyltransferase PBPRA3409 175 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 54308193 Common - hypothetical signal transduction protein PBPRA1000 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54309702 Common - hypothetical protein PBPRA2540 4 None None None 54307769 Common - putative branched chain amino acid transport system II carrier protein PBPRA0564 50 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 54310492 Common - putative D-isomer specific 2-hydroxyacid dehydrogenase family protein PBPRA3426 227 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 54309796 Common - putative ATP-dependent protease LA PBPRA2635 213 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 54309699 Common - hypothetical protein PBPRA2537 3 None None None 54309265 Common - galactose-1-phosphate uridylyltransferase PBPRA2081 79 COG1085 GalT, Galactose-1-phosphate uridylyltransferase Energy production and conversion 54309166 Nonpathogen - hypothetical protein PBPRA1981 3 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 54310108 Common - hypothetical protein PBPRA2992 98 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 54308479 Common - hypothetical protein PBPRA1286 10 None None None 54309088 Common - Hypothetical phosphatidylglycerophosphatase B PBPRA1902 21 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 54308835 Common - hypothetical protein PBPRA1642 4 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54308802 Common - hypothetical protein PBPRA1609 2 None None None 54308636 Common - 6-phosphogluconolactonase PBPRA1443 124 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 54308909 Common bcsA cellulose synthase catalytic subunit PBPRA1720 122 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 54309420 Common - hypothetical ABC transporter, permease protein PBPRA2252 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54309000 Nonpathogen - hypothetical protein PBPRA1813 3 None None None 54309987 Common - putative methyl-accepting chemotaxis protein PBPRA2838 153 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54310332 Common - hypothetical anti-sigma B factor antagonist PBPRA3244 17 COG3113 COG3113, Predicted NTP binding protein (contains STAS domain) General function prediction only 54309144 Common acpD azoreductase PBPRA1958 98 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 54307467 Common - hypothetical toxin secretion, membrane fusionprotein PBPRA0246 100 None None None 54309730 Common - Putative manganese superoxide dismutase PBPRA2569 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 54307914 Common - hypothetical exonuclease SbcD PBPRA0719 102 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 54308627 Nonpathogen - hypothetical Ap4A phosphorylase II PBPRA1434 12 COG4360 APA2, ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) Nucleotide transport and metabolism 54308011 Nonpathogen - hypothetical protein PBPRA0816 1 None None None 54308221 Common - putative glutathione-regulated potassium-efflux system protein KefB PBPRA1028 132 COG4651 RosB, Kef-type K+ transport system, predicted NAD-binding component Inorganic ion transport and metabolism 54308317 Common moaA molybdenum cofactor biosynthesis protein A PBPRA1124 204 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 54307859 Common - hypothetical protein PBPRA0656 57 COG3542 COG3542, Uncharacterized conserved protein Function unknown 54310185 Common recO DNA repair protein RecO PBPRA3087 93 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 54308022 Common - Na(+)-translocating NADH-quinone reductase subunit E PBPRA0827 76 COG2209 NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE Energy production and conversion 54309185 Common - putative oxidoreductase ygjR PBPRA2000 170 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 54310057 Common - putative ABC-type metal ion transport system,permease component PBPRA2941 215 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 54309038 Common potA putrescine/spermidine ABC transporter ATPase protein PBPRA1852 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 54308448 Nonpathogen - hypothetical protein PBPRA1255 1 None None None 54308897 Common - hypothetical protein PBPRA1708 8 COG4469 CoiA, Competence protein General function prediction only 54307851 Common - hypothetical protein PBPRA0648 16 None None None 161936278 Common - predicted kinase PBPRA3589 51 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 54310123 Nonpathogen - hypothetical protein PBPRA3007 1 None None None 54307918 Common - putative phosphate-binding protein PBPRA0723 113 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 161936333 Common tbpA thiamin transporter substrate binding subunit PBPRA0413 52 COG4143 TbpA, ABC-type thiamine transport system, periplasmic component Coenzyme metabolism 54309058 Common - hypothetical transcriptional regulator PBPRA1872 54 COG1309 AcrR, Transcriptional regulator Transcription 54307434 Common - putative lipopolysaccharide biosynthesis glycosyltransferase PBPRA0213 128 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 54308599 Common - hypothetical protein PBPRA1406 20 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 54308818 Common - putative reverse transcriptase/maturase family protein PBPRA1625 92 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 54307752 Common - DNA-binding response regulator in two-component regulatory system with ArcB or CpxA PBPRA0547 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54310379 Common - putative Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase PBPRA3292 164 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 54309278 Common - hypothetical transposase PBPRA2098 134 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308590 Common - Hypothetical NupC family protein PBPRA1397 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 54307412 Common gmk guanylate kinase PBPRA0191 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 54309880 Common - putative 16S rRNA uridine-516 pseudouridylate synthase PBPRA2720 205 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 54308173 Common - hypothetical transposase PBPRA0980 21 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308471 Common - hypothetical amino acid carrier protein(sodium/alanine symporter) PBPRA1278 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 54307669 Common - DNA topoisomerase IV subunit A PBPRA0456 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 54310465 Common - putative Signal transduction histidinekinase PBPRA3399 215 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 54310141 Common - putative translation initiation inhibitor, yjgF family PBPRA3031 182 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 54309292 Common - hypothetical protein PBPRA2112 76 COG2128 COG2128, Uncharacterized conserved protein Function unknown 54308953 Common - putative aminopeptidase N PBPRA1764 161 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 54309833 Common - hypothetical undecaprenylphosphateN-acetylglucosamine 1-phosphate transferase PBPRA2673 173 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 54307393 Common - hypothetical protein PBPRA0172 12 None None None 161936292 Common - hypothetical protein PBPRA3137 205 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 54310570 Common - hypothetical protein PBPRA3517 29 None None None 54307883 Common - hypothetical protein PBPRA0680 67 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 54307615 Common apaG ApaG PBPRA0401 89 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 54308994 Common - putative transcriptional regulator PBPRA1807 22 COG1396 HipB, Predicted transcriptional regulators Transcription 54309712 Common - hypothetical tolA protein PBPRA2551 23 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 54307422 Common - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase PBPRA0201 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 54307311 Common - DNA-binding transcriptional regulator IlvY PBPRA0084 190 COG0583 LysR, Transcriptional regulator Transcription 54309298 Common - putative alcohol dehydrogenase, zinc-containing PBPRA2118 166 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 54310326 Common - hypothetical ATPase PBPRA3238 99 COG1485 COG1485, Predicted ATPase General function prediction only 54310583 Common - hypothetical uroporphyrin-III C-methyltransferase PBPRA3530 55 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 54310507 Common - biotin--protein ligase PBPRA3445 217 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 54307845 Common - Trp operon repressor PBPRA0642 25 COG2973 TrpR, Trp operon repressor Transcription 54309051 Common - hypothetical iron-sulfur cluster-binding protein PBPRA1865 54 COG1146 COG1146, Ferredoxin Energy production and conversion 54307553 Common rplE 50S ribosomal protein L5 PBPRA0332 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 54307635 Common - hypothetical protein PBPRA0421 88 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 54310263 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase PBPRA3175 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 54309644 Common - predicted inner membrane peptidase PBPRA2480 189 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 54307597 Common - inorganic pyrophosphatase PBPRA0383 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 54309649 Common - 3-deoxy-7-phosphoheptulonate synthase PBPRA2485 182 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 54308760 Common - putative hemolysin secretion ATP-binding protein PBPRA1567 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 54310576 Common - putative diaminopimelate decarboxylase PBPRA3523 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 54309552 Common - lipid transporter ATP-binding/permease protein PBPRA2385 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 161936320 Common sdhA succinate dehydrogenase flavoprotein subunit PBPRA1046 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 54309819 Common mnmC 5-methylaminomethyl-2-thiouridine methyltransferase PBPRA2659 70 COG4121 COG4121, Uncharacterized conserved protein Function unknown 54307402 Common - hypothetical protein PBPRA0181 2 None None None 54307301 Common fadB multifunctional fatty acid oxidation complex subunit alpha PBPRA0064 189 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 54308084 Nonpathogen - hypothetical protein PBPRA0890 1 None None None 54308409 Common - putative transporter PBPRA1216 113 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 54310072 Common - UDP-N-acetylglucosamine acyltransferase PBPRA2956 166 COG1043 LpxA, Acyl- acyl carrier protein 54308559 Common dcuC C4-dicarboxylate transporter DcuC PBPRA1366 24 COG3069 DcuC, C4-dicarboxylate transporter Energy production and conversion 54307880 Common - hypothetical protein PBPRA0677 3 None None None 54308944 Common - hypothetical protein PBPRA1755 11 None None None 54308751 Common - putative outer membrane protein PBPRA1558 115 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 54307296 Common - Hypothetical NADH dehydrogenase subunit II-related protein PBPRA0059 2 None None None 54308296 Common - putative alcohol dehydrogenase/acetaldehyde dehydrogenase PBPRA1103 196 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 54307704 Nonpathogen - hypothetical protein PBPRA0492 1 None None None 54308230 Common - hypothetical protein PBPRA1037 8 None None None 54308531 Nonpathogen - hypothetical protein PBPRA1338 2 None None None 54309657 Common - hypothetical protein PBPRA2493 173 COG0583 LysR, Transcriptional regulator Transcription 54310216 Common - hypothetical protein PBPRA3119 36 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 54307323 Common - putative peptide ABC transporter, permease protein PBPRA0101 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54310628 Common - Putative thiol:disulfide interchange protein PBPRA3590 67 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 54309469 Common - putative transcriptional regulator CitB PBPRA2301 182 COG4565 CitB, Response regulator of citrate/malate metabolism Transcription / Signal transduction mechanisms 54308486 Common - hypothetical protein PBPRA1293 42 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 54307897 Common - recombination and repair protein PBPRA0694 206 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 54308036 Common - hypothetical protein PBPRA0841 3 COG3710 CadC, DNA-binding winged-HTH domains Transcription 54307898 Common ppnK inorganic polyphosphate/ATP-NAD kinase PBPRA0695 211 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 54309486 Common - Hypothetical membrane-fusion protein PBPRA2319 149 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54308428 Common - hypothetical protein PBPRA1235 66 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 54310319 Common - ClpXP protease specificity-enhancing factor PBPRA3231 64 COG2969 SspB, Stringent starvation protein B General function prediction only 54307483 Common metL bifunctional aspartate kinase II/homoserine dehydrogenase II PBPRA0262 217 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 54308363 Common - uridine kinase PBPRA1170 91 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 54310143 Common - putative transposase PBPRA3033 26 COG3316 COG3316, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310609 Common aroE shikimate 5-dehydrogenase PBPRA3571 212 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 54307538 Common - putative bacterioferritin-associated ferredoxin PBPRA0317 23 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 54308749 Common - hypothetical hydrolase PBPRA1556 175 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 54310409 Common - hypothetical protein PBPRA3329 4 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 54307333 Common - Putative transcriptional regulator, LysR family PBPRA0112 91 COG0583 LysR, Transcriptional regulator Transcription 54307609 Common rpmA 50S ribosomal protein L27 PBPRA0395 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 54309415 Nonpathogen - hypothetical protein PBPRA2247 1 None None None 54308545 Common - hypothetical protein PBPRA1352 30 COG1403 McrA, Restriction endonuclease Defense mechanisms 54308872 Nonpathogen - hypothetical protein PBPRA1683 1 None None None 161936309 Common - universal stress protein UspE PBPRA1839 60 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 54309317 Common - putative chaperone PBPRA2137 226 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 54308372 Common - hypothetical protein PBPRA1179 5 COG3223 COG3223, Predicted membrane protein Function unknown 54309976 Common - hypothetical protein PBPRA2822 3 COG3710 CadC, DNA-binding winged-HTH domains Transcription 54308288 Common - hypothetical integral membrane protein PBPRA1095 11 None None None 54308730 Common - Hypothetical methylamine metabolism protein PBPRA1537 37 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 54309584 Common - putative iron-containing alcohol dehydrogenase PBPRA2418 170 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 54309718 Common - putative cytochrome d ubiquinol oxidase, subunit II PBPRA2557 156 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 54310446 Common - fumarate reductase iron-sulfur subunit PBPRA3379 208 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 54307826 Common - Putative DNA polymerase III, psi subunit PBPRA0623 15 COG3050 HolD, DNA polymerase III, psi subunit DNA replication, recombination, and repair 54309408 Common - putative ABC transporter, ATP-binding protein PBPRA2240 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 54309941 Common - hypothetical protein PBPRA2787 9 None None None 54310025 Common bcp thioredoxin-dependent thiol peroxidase PBPRA2900 211 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 54308399 Common - hypothetical protein PBPRA1206 28 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 54308516 Common - hypothetical protein PBPRA1323 56 COG2856 COG2856, Predicted Zn peptidase Amino acid transport and metabolism 54309818 Common - putative 3-oxoacyl- synthase I PBPRA2658 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54307717 Common - putative transposase PBPRA0512 31 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308939 Common - hypothetical protein PBPRA1750 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 54308644 Common - hypothetical protein PBPRA1451 5 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 54308854 Common - hypothetical ABC transporterATP-binding/transmembrane protein PBPRA1661 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 54309545 Common - condesin subunit F PBPRA2378 19 COG3006 MukF, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 54308503 Common - Hypothetical bacteriophage replication protein P PBPRA1310 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 54308668 Common - hypothetical binding protein component ofABC transporter PBPRA1475 179 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 54308265 Common - hypothetical protein PBPRA1072 2 None None None 54308216 Common - heat shock protein 90 PBPRA1023 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 54308512 Common - hypothetical protein PBPRA1319 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309999 Common - peptidyl-tRNA hydrolase PBPRA2850 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 54310163 Common - carbon storage regulator PBPRA3065 80 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 54308298 Common - hypothetical protein PBPRA1105 5 None None None 54308213 Common - hypothetical protein PBPRA1020 21 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 54307947 Common - Putative hesB family protein PBPRA0752 165 COG0316 IscA, Uncharacterized conserved protein Function unknown 54308797 Common - hypothetical Fe-S oxidoreductase PBPRA1604 89 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 54309801 Common - putative methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase PBPRA2641 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 54309573 Common - hypothetical periplasmic linker protein PBPRA2407 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54308737 Common - hypothetical 16S rRNA uridine-516 pseudouridylate synthase PBPRA1544 179 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 54309660 Common - hypothetical Flp pilus assembly protein PBPRA2496 142 COG4964 CpaC, Flp pilus assembly protein, secretin CpaC Intracellular trafficking and secretion 54308867 Common - hypothetical signal peptide protein PBPRA1678 15 COG4875 COG4875, Uncharacterized protein conserved in bacteria with a cystatin-like fold Function unknown 54307632 Common - 3-isopropylmalate dehydrogenase PBPRA0418 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 54309391 Common - short chain dehydrogenase PBPRA2213 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 54310363 Nonpathogen - hypothetical protein PBPRA3275 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 161936306 Common ebgA cryptic beta-D-galactosidase subunit alpha PBPRA2084 69 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 54309914 Common - putative ThiJ/PfpI family protein PBPRA2760 104 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 54310103 Common - putative SAM-dependentmethyltransferase PBPRA2987 45 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 54307940 Common secD preprotein translocase subunit SecD PBPRA0745 207 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 54308291 Common cysS cysteinyl-tRNA synthetase PBPRA1098 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309060 Common - hypothetical protein PBPRA1874 38 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 54309614 Common - putative integration host factor, beta subunit PBPRA2449 204 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 54309009 Common - hypothetical protein PBPRA1823 4 None None None 54307692 Common - hypothetical protein PBPRA0479 23 COG3076 COG3076, Uncharacterized protein conserved in bacteria Function unknown 54307929 Common - hypothetical copper homeostasis protein PBPRA0734 59 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 54310128 Common - putative clpB, ATPase with chaperone activity PBPRA3018 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 54309355 Common - riboflavin synthase subunit alpha PBPRA2176 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 54310459 Common - anaerobic C4-dicarboxylate transporter PBPRA3392 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 54308995 Nonpathogen - hypothetical protein PBPRA1808 2 None None None 54308758 Common - putative iron(III) ABC transporter, ATP-binding protein PBPRA1565 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 54308468 Common - Hypothetical 2-dehydro-3-deoxygluconokinase PBPRA1275 126 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 54307259 Common fliF flagellar MS-ring protein PBPRA0022 123 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 54310479 Nonpathogen - hypothetical protein PBPRA3413 1 None None None 54309418 Common - hypothetical replication initiation protein PBPRA2250 22 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 54308790 Common - hypothetical protein PBPRA1597 28 None None None 54310524 Common - hypothetical general secretion pathway protein N PBPRA3471 11 None None None 54307738 Common - tyrosyl-tRNA synthetase PBPRA0533 242 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309294 Common - hypothetical protein PBPRA2114 28 COG4134 COG4134, ABC-type uncharacterized transport system, periplasmic component General function prediction only 54309422 Common - hypothetical oligopeptide transport ATP-binding protein PBPRA2254 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 54309990 Common - 2-dehydro-3-deoxyphosphooctonate aldolase PBPRA2841 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 54310623 Common - Putative SpoOM-related protein PBPRA3585 19 COG4326 Spo0M, Sporulation control protein General function prediction only 54308785 Common - hypothetical protein PBPRA1592 4 None None None 54309217 Common - hypothetical protein PBPRA2032 20 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 54309696 Common - putative pyridoxine kinase PBPRA2534 87 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 54309442 Common - putative hydroxypyruvate isomerase PBPRA2274 87 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 54309365 Common - putative ABC-type amino acid transport system, permease component PBPRA2187 188 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 54308895 Common - Transposase and inactivated derivatives PBPRA1706 54 None None None 54310441 Nonpathogen - hypothetical protein PBPRA3374 1 None None None 54310154 Common - putative Mg2+ and Co2+ transporter CorB PBPRA3044 219 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 54307958 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase PBPRA0763 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 54308687 Common torD chaperone protein TorD PBPRA1494 27 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 54307725 Common - putative endoglucanase-related protein PBPRA0520 9 None None None 54309205 Common - hypothetical protein PBPRA2020 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 54309010 Common - hypothetical protein PBPRA1824 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309524 Common - putative L-lactate permease, LctP PBPRA2357 101 COG1620 LldP, L-lactate permease Energy production and conversion 54309310 Nonpathogen - hypothetical protein PBPRA2130 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 54307449 Common cysE serine acetyltransferase PBPRA0228 205 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 161936299 Common - glyceraldehyde-3-phosphate dehydrogenase PBPRA2602 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 54308458 Common - hypothetical beta-lactamase PBPRA1265 43 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 54307355 Common - hypothetical protein PBPRA0134 4 COG3650 COG3650, Predicted membrane protein Function unknown 54307284 Common - Hypothetical flagellar-specific transcription initiation factor sigma, LafS PBPRA0047 164 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 54307531 Common - hypothetical protein PBPRA0310 43 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 54308951 Common - hypothetical protein PBPRA1762 28 None None None 54310418 Common - primosomal replication protein N PBPRA3338 26 COG2965 PriB, Primosomal replication protein N DNA replication, recombination, and repair 54308661 Common - putative cytochrome c-type protein TorC PBPRA1468 51 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 54308235 Common - hypothetical protein PBPRA1042 113 COG0327 COG0327, Uncharacterized conserved protein Function unknown 54309134 Nonpathogen - hypothetical protein PBPRA1948 1 None None None 54309533 Common - hypothetical protein PBPRA2366 83 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 54309389 Common - hypothetical protein PBPRA2211 18 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 54308670 Common - Putative amino acid ABC transporter PBPRA1477 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 54308286 Common - hypothetical protein PBPRA1093 86 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 54308777 Common - hypothetical protein PBPRA1584 69 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 54309069 Common - Hypothetical membrane-bound lytic murein transglycosylase D PBPRA1883 95 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 54307282 Common - Hypothetical flagellar hook control length protein PBPRA0045 12 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 54309665 Common - hypothetical Flp pilus assembly protein TadC PBPRA2501 72 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 54308677 Common dnaK molecular chaperone DnaK PBPRA1484 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 54308039 Common - succinyl-diaminopimelate desuccinylase PBPRA0844 210 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 54309560 Common - hypothetical protein PBPRA2393 9 None None None 54308499 Nonpathogen - hypothetical protein PBPRA1306 1 None None None 54309870 Common - putative FlmB PBPRA2710 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 54310050 Common - putative ABC-type oligopeptide transportsystem, ATPase component PBPRA2934 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 54308124 Common fliN flagellar motor switch protein PBPRA0931 122 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 54309359 Common - multidrug efflux protein PBPRA2180 175 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 54310225 Common - hypothetical DNA-binding protein PBPRA3128 31 COG2606 EbsC, Uncharacterized conserved protein Function unknown 54307401 Common - hypothetical protein PBPRA0180 3 None None None 54307760 Common - hypothetical sodium:dicarboxylate symporter PBPRA0555 123 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 54307341 Common - sec-independent translocase PBPRA0120 41 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 54307567 Common rplQ 50S ribosomal protein L17 PBPRA0346 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 54309604 Common - putative phage shock protein A PBPRA2439 82 COG1842 PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription Transcription / Signal transduction mechanisms 54309495 Common - 8-amino-7-oxononanoate synthase PBPRA2328 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 54307244 Common - Putative amino acid ABC transporter, periplasmic amino acid-binding portion PBPRA0007 175 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 54309567 Common - hypothetical protein PBPRA2401 13 COG5633 COG5633, Predicted periplasmic lipoprotein General function prediction only 54308463 Common - hypothetical protein PBPRA1270 62 COG3616 COG3616, Predicted amino acid aldolase or racemase Amino acid transport and metabolism 54310602 Common - transposase PBPRA3550 23 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308188 Common - hypothetical protein PBPRA0995 2 None None None 54308990 Common - putative type I restriction enzyme EcoEI Mprotein PBPRA1803 160 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 54308252 Common - Putative ferrous iron transport protein B PBPRA1059 188 COG0370 FeoB, Fe2+ transport system protein B Inorganic ion transport and metabolism 54309012 Common - hypothetical protein PBPRA1826 4 COG4889 COG4889, Predicted helicase General function prediction only 54309455 Common - putative N-acetylneuraminate lyase PBPRA2287 199 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 54307348 Common - universal stress protein UspB PBPRA0127 12 None None None 54307978 Common - putative esterase PBPRA0783 106 COG0627 COG0627, Predicted esterase General function prediction only 54309331 Common - vitamin B12-transporter ATPase PBPRA2151 249 COG4138 BtuD, ABC-type cobalamin transport system, ATPase component Coenzyme metabolism 54309827 Common - hypothetical protein PBPRA2667 141 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 54307500 Common - putative fimbrial assembly protein PBPRA0279 140 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 54307474 Common hslU ATP-dependent protease ATP-binding subunit PBPRA0253 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 54309508 Common - aromatic amino acid aminotransferase PBPRA2341 71 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 54307563 Common rpsM 30S ribosomal protein S13 PBPRA0342 242 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 54309095 Common - putative Cold shock-like protein PBPRA1909 182 COG1278 CspC, Cold shock proteins Transcription 54310543 Common - putative transcriptional regulator PBPRA3490 32 COG3911 COG3911, Predicted ATPase General function prediction only 54307965 Common - hypothetical protein PBPRA0770 95 COG1609 PurR, Transcriptional regulators Transcription 54308382 Common - Hypothetical Maf-like protein PBPRA1189 191 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 54308110 Common fliS flagellar protein FliS PBPRA0917 83 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 54309303 Nonpathogen - hypothetical outer membrane lipoprotein PBPRA2123 1 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 54310512 Common - putative transposase PBPRA3450 14 None None None 54309605 Common - putative psp operon transcriptional activator PBPRA2440 171 COG1221 PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain Transcription / Signal transduction mechanisms 54307740 Common - hypothetical protein PBPRA0535 133 COG2860 COG2860, Predicted membrane protein Function unknown 54310645 Common - F0F1 ATP synthase subunit delta PBPRA3607 172 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 54307862 Common - hypothetical protein PBPRA0659 30 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 54308619 Common - nitrite transporter NirC PBPRA1426 94 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 54309558 Common - hypothetical protein PBPRA2391 9 None None None 54308305 Common aspS aspartyl-tRNA synthetase PBPRA1112 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309195 Common - Putative molybdopterin biosynthesis protein MoeA PBPRA2010 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 54310435 Common - hypothetical protein PBPRA3355 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 54308004 Common motB flagellar motor protein MotB PBPRA0809 143 COG1360 MotB, Flagellar motor protein Cell motility and secretion 54307785 Common - prolipoprotein diacylglyceryl transferase PBPRA0580 209 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 54309762 Common - methionine sulfoxide reductase B PBPRA2601 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 54307261 Common fliH flagellar assembly protein H PBPRA0024 16 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 54310536 Common - putative heat shock protein 15 PBPRA3483 107 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 54307350 Common - hypothetical protein PBPRA0129 136 COG2081 COG2081, Predicted flavoproteins General function prediction only 54310011 Common - hypothetical rare lipoprotein B PBPRA2886 28 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 54307386 Common - LexA repressor PBPRA0165 168 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 54307250 Common - Hypothetical FlhB flagellar biosynthetic protein PBPRA0013 129 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 54307278 Common - Hypothetical flagellin type B PBPRA0041 122 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 54307407 Common - putative xanthine/uracil permease PBPRA0186 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 54309775 Common - hypothetical protein PBPRA2614 75 COG2983 COG2983, Uncharacterized conserved protein Function unknown 54308681 Nonpathogen - putative transposase PBPRA1488 4 None None None 54308145 Common - Putative cytochrome c-type biogenesis protein CcmF PBPRA0952 143 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 54310385 Common - putative transposase and inactivated derivative PBPRA3298 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308928 Nonpathogen - hypothetical protein PBPRA1739 1 None None None 54309284 Common - putative ExbB-like protein PBPRA2104 4 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 54309065 Common - hypothetical protein PBPRA1879 2 None None None 54307909 Common - putative transcriptional regulator, SorC family PBPRA0714 69 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 54307927 Common - hypothetical protein PBPRA0732 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 54307489 Common - argininosuccinate synthase PBPRA0268 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 54309925 Common - phosphoglycerate transport system transcription regulator PBPRA2771 214 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54309964 Common - putative nitrogen regulatory protein P-II family protein PBPRA2810 15 None None None 54309372 Common - putative SAM-dependent methyltransferase PBPRA2194 145 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 54309757 Common ansA cytoplasmic asparaginase I PBPRA2596 135 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 54310467 Common - hypothetical protein PBPRA3401 78 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 54308127 Common fliR flagellar biosynthesis protein FliR PBPRA0934 113 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 54308415 Common - hypothetical protein PBPRA1222 5 None None None 54308679 Common - hypothetical protein PBPRA1486 10 None None None 54310567 Common - putative signal peptide protein PBPRA3514 30 COG5572 COG5572, Predicted integral membrane protein Function unknown 54307821 Common - putative protease PBPRA0618 46 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 54308303 Common - hypothetical protein PBPRA1110 52 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 54309100 Common - hypothetical protein PBPRA1914 64 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 54310305 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase PBPRA3217 209 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 54309177 Common - peptidase PBPRA1992 194 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 54310086 Common - PII uridylyl-transferase PBPRA2970 123 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 54310081 Common frr ribosome recycling factor PBPRA2965 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 54308845 Common - hypothetical protein PBPRA1652 10 COG1276 PcoD, Putative copper export protein Inorganic ion transport and metabolism 54309255 Common - hypothetical protein PBPRA2071 3 None None None 54308571 Common - putative transcriptional activator PBPRA1378 184 COG0583 LysR, Transcriptional regulator Transcription 54308884 Common - hypothetical protein PBPRA1695 25 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 54307698 Common - putative permease PBPRA0485 87 COG0795 COG0795, Predicted permeases General function prediction only 54307993 Common - riboflavin synthase subunit alpha PBPRA0798 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 54309192 Common - Hypothetical pyruvate formate lyase activating enzyme PBPRA2007 65 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 54309159 Nonpathogen - hypothetical protein PBPRA1974 1 None None None 54310572 Common - hypothetical protein PBPRA3519 80 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 54310588 Common - DNA-binding transcriptional regulator AsnC PBPRA3535 135 COG1522 Lrp, Transcriptional regulators Transcription 54308803 Common - hypothetical protein PBPRA1610 22 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 54310036 Common - putative phosphoribosylglycinamide formyltransferase 2 PBPRA2911 223 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 54310222 Common - hypothetical protein PBPRA3125 94 COG2968 COG2968, Uncharacterized conserved protein Function unknown 54310183 Common acpS 4'-phosphopantetheinyl transferase PBPRA3085 161 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 54309988 Common - putative methyl-accepting chemotaxis protein PBPRA2839 153 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54310338 Common - hypothetical sugar phosphate isomerase PBPRA3250 162 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 54307497 Common - hypothetical fimbrial assembly protein PilN PBPRA0276 39 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 54308611 Nonpathogen - hypothetical protein PBPRA1418 1 None None None 54309380 Common - hypothetical protein PBPRA2202 147 COG1213 COG1213, Predicted sugar nucleotidyltransferases Cell envelope biogenesis, outer membrane 54309625 Common - Hypothetical iron-sulfur cluster-binding protein PBPRA2461 41 COG0633 Fdx, Ferredoxin Energy production and conversion 54310560 Common - hypothetical gene 3 protein-related protein PBPRA3507 4 None None None 54309258 Common - putative ABC-type amino acid transport/signaltransduction system PBPRA2074 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 54308649 Nonpathogen - hypothetical protein PBPRA1456 1 None None None 54309497 Common - adenosylmethionine--8-amino-7-oxononanoate transaminase PBPRA2330 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 54307645 Common - hypothetical protein PBPRA0432 152 COG1610 COG1610, Uncharacterized conserved protein Function unknown 54307840 Common - DNA repair protein RadA PBPRA0637 221 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 54309846 Common - hypothetical tyrosine-protein kinase Wzc PBPRA2686 147 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 54308272 Common minC septum formation inhibitor PBPRA1079 86 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 54307817 Common truB tRNA pseudouridine synthase B PBPRA0614 245 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 54307545 Common rpsS 30S ribosomal protein S19 PBPRA0324 246 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 54310063 Common - hypothetical protein PBPRA2947 12 None None None 54310344 Common - putative sigma-54 modulation protein PBPRA3256 131 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 54307587 Common - putative ABC transporter PBPRA0373 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 54309152 Common - hypothetical protein PBPRA1966 25 COG4283 COG4283, Uncharacterized conserved protein Function unknown 54310389 Common - putative sodium/sulfate symporter PBPRA3309 115 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 54308333 Common - hypothetical protein PBPRA1140 62 None None None 54310320 Common sspA stringent starvation protein A PBPRA3232 72 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 54307861 Common - hypothetical protein PBPRA0658 25 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 54308359 Common - hypothetical protein PBPRA1166 2 None None None 54309867 Common - putative polysaccharide biosynthesis protein, NeuB PBPRA2707 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 54307459 Common - hypothetical ferredoxin-NADP reductase PBPRA0238 113 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 54309831 Nonpathogen - Hypothetical cell growth regulatory protein mazE PBPRA2671 2 COG2336 MazE, Growth regulator Signal transduction mechanisms 54310048 Common - hypothetical protein PBPRA2923 32 COG3021 COG3021, Uncharacterized protein conserved in bacteria Function unknown 54309581 Common - hypothetical protein PBPRA2415 52 COG1584 COG1584, Predicted membrane protein Function unknown 54308190 Common - hypothetical protein PBPRA0997 7 None None None 54309214 Common - Hypothetical periplasmic nitrate reductase small subunit precursor PBPRA2029 37 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 161936296 Common metN DL-methionine transporter ATP-binding subunit PBPRA2940 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 54309876 Common - putative mannose-6-phosphate isomer PBPRA2716 41 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 54308864 Common - hypothetical transcriptional regulator PBPRA1671 125 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54308923 Common - hypothetical protein PBPRA1734 207 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 54308575 Nonpathogen - hypothetical protein PBPRA1382 1 None None None 54308482 Common - hypothetical protein PBPRA1289 3 None None None 54309510 Common - hypothetical protein PBPRA2343 2 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 54309690 Common - hypotetical protein similar to lipase PBPRA2526 122 COG0657 Aes, Esterase/lipase Lipid metabolism 54307983 Common - phosphoribosylformylglycinamidine synthase PBPRA0788 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 54308016 Common - hypothetical extracellular solute-binding protein, family 7 PBPRA0821 99 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 54309907 Nonpathogen - hypothetical protein PBPRA2753 1 None None None 54309392 Common - Hypothetical Acyl-CoA-binding protein PBPRA2214 20 COG4281 ACB, Acyl-CoA-binding protein Lipid metabolism 54308160 Common - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase PBPRA0967 224 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 54308247 Common - Putative zinc ABC transporter, ATP-binding protein PBPRA1054 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 54308746 Common - putative ABC transporter, ATP-binding protein PBPRA1553 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 54308874 Common purT phosphoribosylglycinamide formyltransferase 2 PBPRA1685 204 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 54309180 Common - putative transcriptional regulator PBPRA1995 171 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 54307969 Common - hypothetical chemotaxis histidine protein kinase, CheA PBPRA0774 150 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 54310285 Common pdhR transcriptional regulator PdhR PBPRA3197 138 COG2186 FadR, Transcriptional regulators Transcription 54310591 Common - putative 3-polyprenyl-4-hydroxybenzoate decarboxylase PBPRA3538 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 54310346 Common - hypothetical protein PBPRA3258 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 54308263 Common - putative ATP-dependent helicase, DinG family PBPRA1070 147 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 54307378 Common - hypothetical GlpG protein PBPRA0157 90 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 54307656 Common - putative phosphate/sulphate permease PBPRA0443 172 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 54309737 Common - putative permease PBPRA2576 34 COG2056 COG2056, Predicted permease General function prediction only 54309320 Common - hypothetical major outer membrane protein OmpU PBPRA2140 16 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 54309280 Common - putative HugZ protein PBPRA2100 25 COG0748 HugZ, Putative heme iron utilization protein Inorganic ion transport and metabolism 54307756 Common aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein PBPRA0551 29 COG4579 COG4579, Isocitrate dehydrogenase kinase/phosphatase Signal transduction mechanisms 54307248 Common gyrB DNA gyrase subunit B PBPRA0011 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 54310090 Common - hypothetical protein PBPRA2974 32 COG3098 COG3098, Uncharacterized protein conserved in bacteria Function unknown 54310463 Common - hypothetical protein PBPRA3397 54 COG4327 COG4327, Predicted membrane protein Function unknown 54308561 Common - putative multidrug resistance protein PBPRA1368 95 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54308348 Common aat leucyl/phenylalanyl-tRNA--protein transferase PBPRA1155 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 54308436 Common - hypothetical protein PBPRA1243 30 COG4461 LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein Function unknown 54308477 Common - hypothetical protein PBPRA1284 12 COG1163 DRG, Predicted GTPase General function prediction only 54309086 Common - hypothetical transposase PBPRA1900 6 None None None 54307536 Common - elongation factor G PBPRA0315 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 54307782 Common - dinucleoside polyphosphate hydrolase PBPRA0577 115 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 54308223 Common nagA N-acetylglucosamine-6-phosphate deacetylase PBPRA1030 118 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 54310480 Nonpathogen - hypothetical protein PBPRA3414 1 None None None 54310392 Common - putative siroheme synthase PBPRA3312 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 54310271 Common - putative iron(III) ABC transporter, permease protein PBPRA3183 166 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 54309084 Common - Hypothetical muconate cycloisomerase I PBPRA1898 115 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 54310619 Common - Putative Sun protein PBPRA3581 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 54307987 Nonpathogen - hypothetical protein PBPRA0792 1 None None None 54307675 Common xylF D-xylose transporter subunit XylF PBPRA0462 101 COG4213 XylF, ABC-type xylose transport system, periplasmic component Carbohydrate transport and metabolism 54310299 Common - cell division protein FtsZ PBPRA3211 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 54309726 Common - SoxR-reducing system protein RsxE PBPRA2565 76 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 54309435 Common - hydroxydechloroatrazine ethylaminohydrolase PBPRA2267 173 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 54310165 Common alaS alanyl-tRNA synthetase PBPRA3067 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309672 Common - YciI-like protein PBPRA2508 64 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 54307512 Common - putative succinylglutamate 5-semialdehyde dehydrogenase PBPRA0291 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 54310498 Common rpoB DNA-directed RNA polymerase subunit beta PBPRA3432 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 54307252 Common - putative flagellar biosynthetic protein PBPRA0015 113 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 54307991 Common - hypothetical protein PBPRA0796 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 54308269 Common - hypothetical ribonuclease D PBPRA1076 119 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 54308154 Common fadI 3-ketoacyl-CoA thiolase PBPRA0961 179 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 54307776 Common - putative Sodium/glutamate symporter PBPRA0571 164 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 54310382 Common - putative Na+/H+ antiporter PBPRA3295 138 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 54309540 Common - putative transposase and inactivated derivative PBPRA2373 21 None None None 54309576 Common - para-aminobenzoate synthase component I PBPRA2410 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 54309957 Nonpathogen - hypothetical protein PBPRA2803 2 None None None 54309240 Common - hypothetical protein PBPRA2056 8 None None None 54310651 Common - Putative ParA family protein PBPRA3613 230 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54307321 Common - putative peptide ABC transporter,periplasmic peptide-binding protein PBPRA0099 206 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 54309969 Common - putative ABC transporter ATP-binding protein PBPRA2815 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 54307660 Common - Putative methyl-accepting chemotaxis protein PBPRA0447 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309132 Common - hypothetical protein PBPRA1946 11 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 54310641 Common atpC F0F1 ATP synthase subunit epsilon PBPRA3603 176 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 54310351 Common - putative TldD, Zn-dependent protease and theirinactivated homologs PBPRA3263 169 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 54307381 Common glpD glycerol-3-phosphate dehydrogenase PBPRA0160 147 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 54307936 Common - Hypothetical trypsin-like serine protease PBPRA0741 21 COG5640 COG5640, Secreted trypsin-like serine protease Posttranslational modification, protein turnover, chaperones 54309172 Common - hypotehtical ygfJ PBPRA1987 34 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 54307303 Common - Putative potassium uptake protein TrkH PBPRA0066 125 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 54308717 Nonpathogen - hypothetical protein PBPRA1524 1 None None None 54308122 Common fliL flagellar basal body-associated protein FliL PBPRA0929 29 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 54307995 Common ribH riboflavin synthase subunit beta PBPRA0800 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 54307744 Common gltD glutamate synthase subunit beta PBPRA0539 213 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 54308827 Common - hypothetical protein PBPRA1634 3 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 54309224 Common - hypothetical transcriptional regulator,GntR family PBPRA2039 102 COG1725 COG1725, Predicted transcriptional regulators Transcription 54308202 Common - hypothetical protein PBPRA1009 14 None None None 54307873 Common - hypothetical protein PBPRA0670 13 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 54308568 Nonpathogen - hypothetical protein PBPRA1375 2 None None None 54309686 Common - putative nitrite reductase NADPH PBPRA2522 46 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 54309024 Common - fumarate/nitrate reduction transcriptional regulator PBPRA1838 156 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 54308702 Common - hypothetical protein PBPRA1509 6 None None None 54308966 Common - hypothetical DNA binding protein PBPRA1777 26 COG1661 COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif General function prediction only 54308386 Common - 3-oxoacyl-(acyl carrier protein) synthase III PBPRA1193 224 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 54310028 Common - Putative arsenate reductase ArsC PBPRA2903 111 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 54307764 Common - hypothetical protein PBPRA0559 15 COG3945 COG3945, Uncharacterized conserved protein Function unknown 54309840 Common - putative glycosyltransferase PBPRA2680 165 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54310428 Common - putative Membrane protease subunits PBPRA3348 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 54308169 Common - hypothetical protein PBPRA0976 2 None None None 54310239 Common - putative twitching motility protein PilT PBPRA3142 218 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 54310491 Common - hypothetical protein PBPRA3425 26 COG3068 COG3068, Uncharacterized protein conserved in bacteria Function unknown 54307241 Common rnpA ribonuclease P PBPRA0004 73 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 54307838 Common serB phosphoserine phosphatase PBPRA0635 147 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 54307617 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PBPRA0403 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 54308852 Common - hypothetical protein PBPRA1659 40 COG1288 COG1288, Predicted membrane protein Function unknown 54309473 Common - hypothetical protein PBPRA2306 4 None None None 54308373 Common - cob(I)yrinic acid a,c-diamide adenosyltransferase PBPRA1180 142 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 54307572 Common - hypothetical anti-anti-sigma regulatory factor PBPRA0351 32 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 54309766 Common - putative Ser protein kinase PBPRA2605 70 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 54307792 Common - putative ribosomal protein S20 PBPRA0587 209 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 54310289 Common - putative type IV pilin assembly protein PilB PBPRA3201 217 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 54307370 Common - hypothetical protein PBPRA0149 13 None None None 54310195 Common - L-aspartate oxidase PBPRA3097 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 54310581 Common - hypothetical protein PBPRA3528 164 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 54308881 Nonpathogen - hypothetical protein PBPRA1692 1 COG3710 CadC, DNA-binding winged-HTH domains Transcription 54307843 Common - putative ABC transporter ATP-binding protein PBPRA0640 243 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 54308550 Common - hypothetical protein PBPRA1357 45 COG4653 COG4653, Predicted phage phi-C31 gp36 major capsid-like protein General function prediction only 54308104 Common flgL flagellar hook-associated protein FlgL PBPRA0911 85 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 54309714 Common - Putative TolQ protein PBPRA2553 149 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 54308787 Common - hypothetical protein PBPRA1594 5 None None None 54308728 Common - hypothetical heme receptor PBPRA1535 133 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 54309128 Common - putative chlorohydrolase/aminohydrolase PBPRA1942 132 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 54308218 Common hemH ferrochelatase PBPRA1025 159 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 54307316 Common - hypothetical protein PBPRA0089 139 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54307424 Common - putative ribosomal protein L28 PBPRA0203 164 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 54310211 Common - hypothetical protein PBPRA3114 40 COG1342 COG1342, Predicted DNA-binding proteins General function prediction only 54307644 Common dnaG DNA primase PBPRA0431 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 54307519 Common - hypothetical transcriptional regulator PBPRA0298 183 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 54308081 Nonpathogen - hypothetical protein PBPRA0887 1 None None None 54308443 Common - hypothetical protein PBPRA1250 74 COG2078 AMMECR1, Uncharacterized conserved protein Function unknown 54310639 Common glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase PBPRA3601 231 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 54309642 Common - hypothetical protein PBPRA2478 13 None None None 54307706 Common - putative deacetylase DA1 PBPRA0494 8 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 54308143 Common - Putative heme exporter protein C PBPRA0950 125 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 54309624 Common nrdB ribonucleotide-diphosphate reductase subunit beta PBPRA2460 152 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 54310610 Common - coproporphyrinogen III oxidase PBPRA3572 113 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 54309484 Nonpathogen - hypothetical protein PBPRA2317 1 None None None 161936322 Common - replication initiation regulator SeqA PBPRA1039 23 COG3057 SeqA, Negative regulator of replication initiationR DNA replication, recombination, and repair 54308484 Common - hypothetical pirin-related protein PBPRA1291 131 COG1741 COG1741, Pirin-related protein General function prediction only 54310399 Common - phosphoadenosine phosphosulfate reductase PBPRA3319 154 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 54308406 Common - hypothetical protein PBPRA1213 3 COG5339 COG5339, Uncharacterized protein conserved in bacteria Function unknown 54307895 Common - hypothetical protein PBPRA0692 60 COG2914 COG2914, Uncharacterized protein conserved in bacteria Function unknown 161936316 Common - cysteine/glutathione ABC transporter membrane/ATP-binding component PBPRA1157 249 COG4987 CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 54309078 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A PBPRA1892 141 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 54310214 Common - 2-octaprenyl-6-methoxyphenol hydroxylase PBPRA3117 133 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 54309107 Common - carboxy-terminal protease PBPRA1921 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 54308071 Common - hypothetical integrase PBPRA0877 88 COG0582 XerC, Integrase DNA replication, recombination, and repair 54310074 Common - putative UDP-3-O- glucosamine N-acyltransferase PBPRA2958 158 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 54308425 Common - Hypothetical sensor protein TorS PBPRA1232 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54309837 Common - hypotetical teichoic acid biosynthesis protein A PBPRA2677 22 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 54309985 Common ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor PBPRA2836 141 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 54310489 Common - hypothetical protein PBPRA3423 216 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 54309467 Common - Putative oxaloacetate decarboxylase, beta subunit PBPRA2299 56 COG1883 OadB, Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit Energy production and conversion 54308030 Common - putative xanthine/uracil permease family protein PBPRA0835 135 COG2252 COG2252, Permeases General function prediction only 54309655 Common trpA tryptophan synthase subunit alpha PBPRA2491 215 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 54309962 Common - phosphodiesterase PBPRA2808 44 COG0622 COG0622, Predicted phosphoesterase General function prediction only 54307900 Common dnaK molecular chaperone DnaK PBPRA0697 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 54308209 Common - adenine phosphoribosyltransferase PBPRA1016 187 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 54308501 Nonpathogen - hypothetical protein PBPRA1308 1 None None None 54307464 Common - hypothetical protein PBPRA0243 5 None None None 54309267 Common - DNA-binding transcriptional repressor PBPRA2083 124 COG1609 PurR, Transcriptional regulators Transcription 54307451 Common cpxA two-component sensor protein PBPRA0230 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54309761 Common - hypothetical ISSod3, transposase PBPRA2600 16 None None None 54307893 Common smpB SsrA-binding protein PBPRA0690 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 54309402 Common - putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase PBPRA2230 238 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 54310125 Common - transposase PBPRA3009 133 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307470 Common - putative glycerol uptake facilitator protein PBPRA0249 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 54307794 Common - hypothetical protein PBPRA0589 149 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 54310436 Common - putative iron-sulfur cluster-binding protein PBPRA3356 137 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 54308392 Common - hypothetical protein PBPRA1199 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 54310448 Common - fumarate reductase subunit D PBPRA3381 24 COG3080 FrdD, Fumarate reductase subunit D Energy production and conversion 54310034 Common upp uracil phosphoribosyltransferase PBPRA2909 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 54308024 Common - Putative thiamin biosynthesis lipoprotein ApbE PBPRA0829 139 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 54308629 Common - hypothetical Cell wall-associated hydrolase PBPRA1436 106 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 54309341 Common - putative threonyl-tRNA synthetase PBPRA2161 224 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309994 Common prfA peptide chain release factor 1 PBPRA2845 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 54307445 Common - phosphoglyceromutase PBPRA0224 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 54307823 Common - putative c-di-GMP phosphodiesterase A-related protein PBPRA0620 180 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 54308913 Common - glyceraldehyde-3-phosphate dehydrogenase PBPRA1724 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 161936290 Common - hypoxanthine-guanine phosphoribosyltransferase PBPRA3180 146 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 161936284 Common - elongation factor P PBPRA3382 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 54307885 Nonpathogen - hypothetical protein PBPRA0682 1 None None None 54307438 Common - Putative Lex2B protein (lipooligosaccharide 5G8 epitope biosynthesis-associated protein) PBPRA0217 30 COG3306 COG3306, Glycosyltransferase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 54309301 Common - inner membrane transport protein YdhC PBPRA2121 177 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54309973 Common - putative thioredoxin-like protein PBPRA2819 195 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 54309031 Common - hypothetical protein PBPRA1845 27 None None None 54307364 Common - putative oxidoreductase, short-chain dehydrogenase/reductase family PBPRA0143 234 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 54308657 Common - peptide synthase PBPRA1464 205 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54308765 Common - DNA-binding transcriptional regulator FruR PBPRA1572 125 COG1609 PurR, Transcriptional regulators Transcription 54308352 Common - putative thioredoxin reductase PBPRA1159 248 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 54309056 Common - short chain dehydrogenase PBPRA1870 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 54309650 Common - anthranilate synthase component I PBPRA2486 221 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 54308175 Common - hypothetical copper resistance protein B precursor PBPRA0982 42 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 54308068 Common - hypothetical protein PBPRA0873 2 None None None 54308907 Nonpathogen - hypothetical protein PBPRA1718 1 None None None 54310242 Common - hypothetical protein PBPRA3145 78 COG0762 COG0762, Predicted integral membrane protein Function unknown 161936335 Common rpsD 30S ribosomal protein S4 PBPRA0344 218 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 54309900 Common - hypothetical protein PBPRA2746 194 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 54309647 Common - putative translation factor PBPRA2483 144 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 54309353 Common - hypothetical protein PBPRA2174 70 COG3001 COG3001, Uncharacterized protein conserved in bacteria Function unknown 54307395 Common - protoheme IX farnesyltransferase PBPRA0174 183 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 54309102 Common - hypothetical protein PBPRA1916 3 None None None 54309219 Common - hypothetical protein PBPRA2034 19 None None None 54307526 Common - putative peptidyl-prolyl cis-trans isomerase PBPRA0305 118 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 54310470 Common - 3-dehydroquinate dehydratase PBPRA3404 169 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 54307939 Common yajC preprotein translocase subunit YajC PBPRA0744 170 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 54308947 Common - putative collagenase family protease PBPRA1758 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 54308112 Common - hypothetical transposase PBPRA0919 14 None None None 54308975 Common - hypothetical transcriptional regulator PBPRA1786 39 COG0789 SoxR, Predicted transcriptional regulators Transcription 54307766 Common - hypothetical protein PBPRA0561 90 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 54309794 Common - putative peptidyl-prolyl cis-trans isomerase D PBPRA2633 163 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 54307671 Common - putative symporter YagG PBPRA0458 81 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 54310522 Common - putative CysQ protein PBPRA3469 203 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 54308940 Common - phosphoenolpyruvate synthase PBPRA1751 234 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 54307954 Common ndk nucleoside diphosphate kinase PBPRA0759 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 54309996 Common - hypothetical outer membrane lipoprotein LolB PBPRA2847 34 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 161936297 Common rrmA 23S rRNA methyltransferase A PBPRA2791 56 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 54307967 Common - putative chemotaxis protein CheY PBPRA0772 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54310159 Common - hypothetical protein PBPRA3049 79 COG1238 COG1238, Predicted membrane protein Function unknown 54309861 Nonpathogen - hypothetical protein PBPRA2701 9 None None None 54308390 Common - 3-oxoacyl-(acyl carrier protein) synthase II PBPRA1197 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54310354 Common - ribonuclease G PBPRA3266 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 54310400 Common - putative sulfite reductase (NADPH) hemoprotein beta-component PBPRA3320 143 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 54307920 Common - hypotetical protein PBPRA0725 32 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 54309363 Common - putative amino acid ABC transporter, periplasmic amino acid-binding protein PBPRA2185 116 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 54308792 Nonpathogen - hypothetical protein PBPRA1599 1 None None None 54308046 Common - Hypothetical iron-sulfur cluster-binding protein NapF PBPRA0851 65 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 54307432 Common - 3-deoxy-D-manno-octulosonic-acid transferase PBPRA0211 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 54309728 Common - putative lactoylglutathione lyase PBPRA2567 123 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 54308274 Common - putative lytic murein transglycosylase PBPRA1081 106 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 54309413 Common - hypothetical xanthine dehydrogenase accessory factor XdhC PBPRA2245 104 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 54310059 Common - hypothetical protein PBPRA2943 90 COG1720 COG1720, Uncharacterized conserved protein Function unknown 54310006 Common - putative hemolysin PBPRA2881 218 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 54310555 Common - GTPase EngB PBPRA3502 174 COG0218 COG0218, Predicted GTPase General function prediction only 54308237 Common sdhC succinate dehydrogenase cytochrome b556 large membrane subunit PBPRA1044 51 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 54309526 Common - putative electron transport protein ykgF PBPRA2359 95 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 54308378 Common - putative sulfate permease family protein PBPRA1185 171 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 54310564 Common - hypothetical threonine efflux protein PBPRA3511 44 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54308767 Common - Putative 1-phosphofructokinase PBPRA1574 139 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 54308102 Common flgJ peptidoglycan hydrolase PBPRA0909 74 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 54308514 Nonpathogen - hypothetical protein PBPRA1321 1 None None None 54310177 Common eno phosphopyruvate hydratase PBPRA3079 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 54310152 Common - putative signal recognition particle protein PBPRA3042 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 54308631 Common - hypothetical protein PBPRA1438 62 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 54307286 Common - Hypothetical chemotaxis LafU protein PBPRA0049 103 COG1360 MotB, Flagellar motor protein Cell motility and secretion 54309207 Common - hypothetical protein PBPRA2022 170 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 54307353 Common - putative aldehyde dehydrogenase PBPRA0132 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 54309835 Common - Putative nucleotide sugar dehydrogenase PBPRA2675 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 54308988 Common - hypothetical protein PBPRA1801 11 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 54310416 Common rplI 50S ribosomal protein L9 PBPRA3336 213 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 54308659 Common - putative methyl-accepting chemotaxis protein PBPRA1466 156 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309612 Common - hypothetical protein PBPRA2447 70 COG2956 COG2956, Predicted N-acetylglucosaminyl transferase Carbohydrate transport and metabolism 54309711 Common tolB translocation protein TolB PBPRA2550 158 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 54309938 Common - putative transport system permease protein PBPRA2784 11 None None None 54310255 Common - putative penicillin-binding protein 1B PBPRA3167 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 54308614 Common - putative NADH oxidase PBPRA1421 237 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 54307956 Common - Hypothetical fimbrial biogenesis and twitching motility protein PBPRA0761 90 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 54309744 Common - putative carboxypeptidase G2 PBPRA2583 165 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 54310145 Common - putative two-component response-regulatory protein YehT PBPRA3035 207 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 54309893 Common - putative ABC-type arginine/histidine transport system, permease component PBPRA2739 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 161936304 Common - glyoxylate carboligase PBPRA2275 221 COG3960 COG3960, Glyoxylate carboligase General function prediction only 54308518 Common - hypothetical protein PBPRA1325 6 None None None 54308932 Common - hypothetical CheY-like receiver protein PBPRA1743 169 COG4753 COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Signal transduction mechanisms 54308699 Common - hypothetical protein PBPRA1506 14 COG3668 ParE, Plasmid stabilization system protein General function prediction only 54309286 Common - hypothetical hemin ABC transporter, periplasmichemin-binding protein HutB PBPRA2106 99 COG4558 ChuT, ABC-type hemin transport system, periplasmic component Inorganic ion transport and metabolism 54308276 Common - putative Na+/H+ antiporter PBPRA1083 72 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 54309348 Common - putative histidine utilization repressor PBPRA2169 121 COG2188 PhnF, Transcriptional regulators Transcription 54308451 Common nrfA cytochrome c nitrite reductase PBPRA1258 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 54308600 Common - putative ferredoxin PBPRA1407 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 54308967 Nonpathogen - hypothetical protein PBPRA1778 1 None None None 54308543 Common - hypothetical biphenyl-2,3-diol 1,2-dioxygenase III-related protein PBPRA1350 43 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 54308721 Common - hypothetical transposase PBPRA1528 69 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309586 Common - hypothetical protein PBPRA2420 58 COG2985 COG2985, Predicted permease General function prediction only 54310624 Common - Hypothetical GntR-famly transcriptional regulator PBPRA3586 118 COG2186 FadR, Transcriptional regulators Transcription 54309315 Nonpathogen - hypothetical protein PBPRA2135 9 COG0546 Gph, Predicted phosphatases General function prediction only 54308117 Common fliG flagellar motor switch protein G PBPRA0924 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 54310407 Common - hypothetical protein PBPRA3327 26 COG1406 COG1406, Predicted inhibitor of MCP methylation, homolog of CheC Cell motility and secretion 54307719 Common - hypothetical protein PBPRA0514 6 None None None 54308739 Common - hypothetical protein PBPRA1546 8 None None None 54309812 Common - acetyl-CoA carboxylase subunit beta PBPRA2652 176 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 54310546 Common - hypothetical protein PBPRA3493 13 None None None 54308799 Common - hypothetical protein PBPRA1606 4 None None None 54310371 Common - putative MSHA biogenesis protein MshL PBPRA3283 143 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 54309571 Common - dihydroorotase PBPRA2405 90 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 54308361 Common metG methionyl-tRNA synthetase PBPRA1168 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309175 Common - carbamate kinase PBPRA1990 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 161936307 Common galM aldose 1-epimerase PBPRA2079 89 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 54307263 Common - hypothetical protein PBPRA0026 2 None None None 54307383 Common - hypothetical chorismate-pyruvate lyase PBPRA0162 45 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 54307853 Common - putative ABC transporter ATP-binding protein PBPRA0650 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 54308427 Common - elongation factor G PBPRA1234 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 54308063 Common - hypothetical protein PBPRA0868 12 None None None 54309556 Common - putative ABC transporter ATP-binding protein PBPRA2389 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 54308152 Common - hypothetical protein PBPRA0959 8 None None None 54309951 Common - hypothetical protein PBPRA2797 23 COG3092 COG3092, Uncharacterized protein conserved in bacteria Function unknown 54309807 Common - hypothetical protein PBPRA2647 24 None None None 54310170 Common - hypothetical lipoprotein NlpD PBPRA3072 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 54309092 Common - hypothetical protein PBPRA1906 5 None None None 54309912 Common - hypothetical protein PBPRA2758 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 54309099 Nonpathogen - hypothetical protein PBPRA1913 2 None None None 54309543 Common mukB cell division protein MukB PBPRA2376 23 COG3096 MukB, Uncharacterized protein involved in chromosome partitioning Cell division and chromosome partitioning 54310365 Common - putative MSHA pilin protein MshB PBPRA3277 7 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 54308638 Common - putative sodium/alanine symporter PBPRA1445 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 54309513 Common - sensory histidine kinase UhpB PBPRA2346 148 COG3851 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific Signal transduction mechanisms 54310383 Common - hypothetical protein PBPRA3296 7 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310101 Common - hypothetical protein PBPRA2985 47 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 54309007 Nonpathogen - hypothetical protein PBPRA1821 2 None None None 54309800 Nonpathogen - hypothetical protein PBPRA2639 1 None None None 54309427 Common - conserved hypothetical protein, membrane protein PBPRA2259 41 COG3748 COG3748, Predicted membrane protein Function unknown 54309466 Common - pyruvate carboxylase subunit B PBPRA2298 206 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 54309026 Common - hypothetical protein PBPRA1840 2 None None None 54310377 Common uvrA excinuclease ABC subunit A PBPRA3290 241 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 54308250 Common - conserved hypothetical protein, possible membrane protein PBPRA1057 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 54308397 Common - hypothetical protein PBPRA1204 49 COG2431 COG2431, Predicted membrane protein Function unknown 54307487 Common argC N-acetyl-gamma-glutamyl-phosphate reductase PBPRA0266 214 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 54310088 Common - flavodoxin PBPRA2972 67 COG0716 FldA, Flavodoxins Energy production and conversion 54308490 Common - hypothetical cation efflux system component PBPRA1297 29 COG3965 COG3965, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 54310565 Common - putative gamma-glutamyltranspeptidase PBPRA3512 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 54308301 Common - hypothetical protein PBPRA1108 38 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 54310586 Common - hypothetical protein PBPRA3533 51 None None None 54309063 Common - hypothetical protein PBPRA1877 11 None None None 54309821 Common - hypothetical protein PBPRA2661 136 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 54307427 Common - formamidopyrimidine-DNA glycosylase PBPRA0206 182 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 54307849 Common - hypothetical protein PBPRA0646 102 COG3275 LytS, Putative regulator of cell autolysis Signal transduction mechanisms 54309438 Common - putative transposase PBPRA2270 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310148 Common rplS 50S ribosomal protein L19 PBPRA3038 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 54310203 Common - hypothetical protein PBPRA3105 2 None None None 54307608 Common rplU 50S ribosomal protein L21 PBPRA0394 215 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 54307490 Common - bifunctional argininosuccinate lyase/N-acetylglutamate synthase PBPRA0269 232 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 54308981 Nonpathogen - hypothetical protein PBPRA1792 1 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 54308549 Common - hypothetical protease/scaffold protein PBPRA1356 39 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 54309759 Common - hypothetical protein PBPRA2598 26 COG3139 COG3139, Uncharacterized protein conserved in bacteria Function unknown 54308843 Nonpathogen - hypothetical protein PBPRA1650 2 None None None 54308125 Common fliP flagellar biosynthesis protein FliP PBPRA0932 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 54310060 Common - prolyl-tRNA synthetase PBPRA2944 246 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54308570 Common - hypothetical protein PBPRA1377 5 None None None 54309040 Common potC spermidine/putrescine ABC transporter membrane protein PBPRA1854 216 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 54309777 Common - putative transcriptional regulator PBPRA2616 8 None None None 54310131 Common rluD 23S rRNA pseudouridine synthase D PBPRA3021 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 54309493 Common bioD dithiobiotin synthetase PBPRA2326 151 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 54308330 Common - hypothetical protein PBPRA1137 176 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54307585 Common - hypothetical protein PBPRA0371 21 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 54308613 Nonpathogen - hypothetical protein PBPRA1420 2 None None None 54307810 Common - putative dihydropteroate synthase PBPRA0605 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 54310227 Common - fructose-bisphosphate aldolase PBPRA3130 172 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 54309272 Nonpathogen - hypothetical protein PBPRA2088 1 None None None 54309229 Common - Hypothetical transposase PBPRA2045 134 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310023 Common dapA dihydrodipicolinate synthase PBPRA2898 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 54307871 Common - hypothetical protein PBPRA0668 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 54308195 Common - hypothetical protein PBPRA1002 27 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 54308950 Common - hypothetical protein PBPRA1761 7 None None None 54308181 Nonpathogen - hypothetical protein PBPRA0988 1 None None None 54309922 Common - hypothetical protein PBPRA2768 18 COG3013 COG3013, Uncharacterized conserved protein Function unknown 54308413 Common zntA zinc/cadmium/mercury/lead-transporting ATPase PBPRA1220 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 54308915 Common - maltodextrin glucosidase PBPRA1726 166 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 54307742 Common - adenosylcobinamide-phosphate synthase PBPRA0537 62 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 54307723 Common - hypothetical N-acetyl-beta-hexosaminidase PBPRA0518 57 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 54310251 Common - putative A/G-specific adenine glycosylase PBPRA3154 232 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 54310265 Common - putative permease PBPRA3177 135 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 54307495 Common - putative penicillin-binding protein 1A PBPRA0274 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 161936318 Common ruvA Holliday junction DNA helicase motor protein PBPRA1116 211 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 54307590 Common - hypothetical transcriptional regulator PBPRA0376 18 COG3054 COG3054, Predicted transcriptional regulator General function prediction only 54307447 Common - preprotein translocase subunit SecB PBPRA0226 108 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 54309598 Common - hypothetical 6-O-methylguanine-DNA methyltransferase PBPRA2433 208 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 54310411 Common - replicative DNA helicase PBPRA3331 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 54307819 Common - polynucleotide phosphorylase/polyadenylase PBPRA0616 243 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 54310313 Common - hypothetical protein PBPRA3225 7 None None None 54308709 Nonpathogen - hypothetical protein PBPRA1516 1 None None None 54307314 Common - putative multidrug resistance protein PBPRA0087 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 54308058 Common - putative phosphocarrier protein HPr PBPRA0863 142 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 54310538 Common - phosphoenolpyruvate carboxykinase PBPRA3485 97 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 54309974 Common - Hypothetical heat shock protein PBPRA2820 4 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 54309878 Common - hypothetical protein PBPRA2718 19 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 54307647 Common - putative O-sialoglycoprotein endopeptidase PBPRA0434 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 54309562 Common - putative peptidyl-prolyl cis-trans isomerase, FKBP-type PBPRA2395 138 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 54307569 Common - hypothetical protein PBPRA0348 2 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54307599 Common - putative UDP-N-acetylmuramate-alanine ligase PBPRA0385 209 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 54307749 Common - hypothetical sensory box/GGDEF family protein PBPRA0544 189 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 54309045 Common - NAD-dependent deacetylase PBPRA1859 152 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 54309014 Common - hypothetical protein PBPRA1828 29 COG3287 COG3287, Uncharacterized conserved protein Function unknown 54309569 Common - putative Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase PBPRA2403 231 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 54309871 Common - hypothetical polysaccharide biosynthesis protein PBPRA2711 205 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54308776 Common - hypothetical protein PBPRA1583 15 None None None 54309750 Common - hypothetical protein PBPRA2589 176 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 54309109 Common - hypothetical protein PBPRA1923 82 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 54310188 Common - putative signal peptidase I PBPRA3090 210 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 54308882 Common sbcB exonuclease I PBPRA1693 51 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 54307271 Common - Hypothetical FlgF flagellar basal-body rod protein PBPRA0034 125 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 54309126 Common - hypothetical CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs PBPRA1940 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 54307922 Common - hypothetical protein PBPRA0727 30 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 54307346 Common - putative universal stress protein A PBPRA0125 21 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 54307520 Common - hypothetical protein PBPRA0299 102 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54307472 Common - ribonuclease activity regulator protein RraA PBPRA0251 69 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 54308098 Common flgF flagellar basal body rod protein FlgF PBPRA0905 125 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 54309406 Common - response regulator PBPRA2238 219 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 54309118 Common - putative dehydrogenase PBPRA1932 112 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 54310269 Common - hypothetical OpaR PBPRA3181 8 COG1309 AcrR, Transcriptional regulator Transcription 54309639 Common - hypothetical protein PBPRA2475 20 None None None 54310518 Common - tRNA (uracil-5-)-methyltransferase PBPRA3465 163 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 54310457 Common fxsA FxsA PBPRA3390 59 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 54307754 Common - ribonuclease activity regulator protein RraA PBPRA0549 68 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 54307799 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase PBPRA0594 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 54310303 Common murG N-acetylglucosaminyl transferase PBPRA3215 207 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 54308666 Common - hypothetical protein PBPRA1473 28 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 54308136 Common - chemotaxis-specific methylesterase PBPRA0943 203 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 54309110 Common - putative ABC transporter, ATP-binding protein PBPRA1924 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 54309282 Common - coproporphyrinogen III oxidase PBPRA2102 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 54308461 Common - hypothetical protein PBPRA1268 58 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 54307828 Common - putative peptide chain release factor RF-3 PBPRA0625 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 54307677 Common - putative inner membrane permease of D-xyloseABC transporter PBPRA0464 110 COG4214 XylH, ABC-type xylose transport system, permease component Carbohydrate transport and metabolism 54307504 Common - putative DNA adenine methylase PBPRA0283 101 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 54309923 Common - hypothetical phosphoglycerate transport regulatory protein PgtC PBPRA2769 42 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 54309097 Common - hypothetical protein PBPRA1911 2 None None None 54310433 Common - putative N-acetylmuramoyl-L-alanine amidase PBPRA3353 185 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 54308524 Common - hypothetical protein PBPRA1331 4 None None None 54308456 Common - Hypothetical thiol:disulfide interchange protein DsbE PBPRA1263 134 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 54307462 Nonpathogen - hypothetical protein PBPRA0241 1 None None None 54307910 Common mepA penicillin-insensitive murein endopeptidase PBPRA0715 39 COG3770 MepA, Murein endopeptidase Cell envelope biogenesis, outer membrane 54307266 Common - hypothetical protein PBPRA0029 40 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 54307619 Common - organic solvent tolerance protein PBPRA0405 123 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 54308791 Common - hypothetical ATP-dependent helicase PBPRA1598 202 COG1201 Lhr, Lhr-like helicases General function prediction only 54309471 Common - hypothetical hemolysin secretion protein HylB PBPRA2303 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54310127 Common - transposase and inactivated derivative PBPRA3011 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309034 Common - peptidase T PBPRA1848 60 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 54310339 Common - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase PBPRA3251 103 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 54308292 Nonpathogen - hypothetical protein PBPRA1099 1 None None None 54309723 Common - electron transport complex protein RnfC PBPRA2562 80 COG4656 RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC Energy production and conversion 54308773 Common - Putative transposase PBPRA1580 6 None None None 54310120 Common - putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase PBPRA3004 48 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 54307327 Common - thiamine biosynthesis protein ThiC PBPRA0106 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 54308755 Common - hypothetical protein PBPRA1562 59 COG0628 PerM, Predicted permease General function prediction only 54307666 Common - cyclic 3',5'-adenosine monophosphate phosphodiesterase PBPRA0453 85 COG1409 Icc, Predicted phosphohydrolases General function prediction only 54310181 Common rumA 23S rRNA 5-methyluridine methyltransferase PBPRA3083 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 54309734 Common - putative long-chain fatty acid transport protein PBPRA2573 82 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 54308905 Common - hypothetical protein PBPRA1716 18 None None None 54307887 Common - hypothetical protein PBPRA0684 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 54310516 Common - hypothetical protein PBPRA3463 28 COG2102 COG2102, Predicted ATPases of PP-loop superfamily General function prediction only 54308594 Common - Hypothetical transcriptional regulator, LysR family PBPRA1401 179 COG0583 LysR, Transcriptional regulator Transcription 54309884 Common - putative glutathione S-transferase PBPRA2730 79 COG0435 ECM4, Predicted glutathione S-transferase Posttranslational modification, protein turnover, chaperones 54307359 Common rhtB homoserine/homoserine lactone efflux protein PBPRA0138 122 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54309898 Common - hypothetical transcriptional regulator, ArsR family PBPRA2744 73 COG0640 ArsR, Predicted transcriptional regulators Transcription 54308693 Common - hypothetical protein PBPRA1500 2 None None None 161936338 Common - phosphoenolpyruvate carboxylase PBPRA0265 117 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 54309857 Common - putative galactosyl-transferase PBPRA2697 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 54307684 Common - hypothetical arginine repressor PBPRA0471 33 COG1438 ArgR, Arginine repressor Transcription 54308441 Common - putative alkylated DNA repair protein PBPRA1248 40 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 54309054 Common - Putative formate dehydrogenase accessory protein PBPRA1868 134 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 54310437 Common - oligoribonuclease PBPRA3370 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 54307891 Common - Putative transposase of Tn5 PBPRA0688 7 None None None 54309444 Common - malate synthase PBPRA2276 96 COG2225 AceB, Malate synthase Energy production and conversion 54307855 Common - hypothetical protein PBPRA0652 13 None None None 54308595 Common - hypothetical extracellular solute-binding protein,family 7 PBPRA1402 105 COG4663 FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 54308814 Common - hypothetical protein PBPRA1621 59 None None None 54308781 Common - hypothetical transposase PBPRA1588 26 COG5433 COG5433, Transposase DNA replication, recombination, and repair 54307688 Common - ornithine carbamoyltransferase PBPRA0475 238 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 54309169 Nonpathogen - hypothetical protein PBPRA1984 1 None None None 54309902 Common - hypothetical protein PBPRA2748 39 COG1944 COG1944, Uncharacterized conserved protein Function unknown 54310112 Common - N-acetylglutamate synthase PBPRA2996 190 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 54309125 Common - hypothetical dehydrogenase PBPRA1939 94 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 54310171 Common pcm protein-L-isoaspartate O-methyltransferase PBPRA3073 155 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 54308234 Common - hypothetical protein PBPRA1041 17 COG3782 COG3782, Uncharacterized protein conserved in bacteria Function unknown 54309789 Common - deoxyguanosinetriphosphate triphosphohydrolase-like protein PBPRA2628 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 54309318 Common - hypothetical disulfide oxidoreductase PBPRA2138 33 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 54308623 Common - putative nicotinamide mononucleotide transporter PBPRA1430 61 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 54307382 Common - flagellar basal body-associated protein FliL-like protein PBPRA0161 19 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 54308282 Common - imidazole glycerol-phosphate dehydratase/histidinol phosphatase PBPRA1089 218 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 54310574 Common - hypothetical protein PBPRA3521 45 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 54307593 Common - hypothetical outer membrane protein PBPRA0379 132 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 54309251 Common - hypothetical phosphatase/phosphohexomutase PBPRA2067 182 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 54308151 Common - putative long-chain fatty acid transport protein PBPRA0958 74 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 54307523 Common - glutathione-regulated potassium-efflux system ancillary protein KefG PBPRA0302 63 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 161936324 Common - chemotaxis-specific methylesterase PBPRA0778 164 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 54308606 Common - hypothetical protein PBPRA1413 7 None None None 54309531 Common - putative cytochrome c-type protein TorC PBPRA2364 50 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 54308035 Common proA gamma-glutamyl phosphate reductase PBPRA0840 188 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 54310557 Common - isoprenoid biosynthesis protein with amidotransferase-like domain PBPRA3504 39 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 54308032 Common frsA fermentation/respiration switch protein PBPRA0837 33 None None None 54308538 Common - Hypothetical tryptophan-specific transport protein PBPRA1345 31 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 54309073 Common - putative sensor histidine kinase PBPRA1887 219 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 54309075 Common - Hypothetical extracellular tungstate binding protein PBPRA1889 62 COG2998 TupB, ABC-type tungstate transport system, permease component Coenzyme metabolism 54309692 Nonpathogen - hypothetical protein PBPRA2528 2 None None None 54308820 Common - hypothetical protein PBPRA1627 6 None None None 54309482 Common - hypothetical protein PBPRA2315 13 None None None 54310322 Common - putative Ubiquinol-cytochrome c reductase, cytochrome B PBPRA3234 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 54308002 Common - exodeoxyribonuclease VII small subunit PBPRA0807 127 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 161936319 Common - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase PBPRA1087 215 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 54310136 Common - phospho-2-dehydro-3-deoxyheptonate aldolase PBPRA3026 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 54310327 Common - cytochrome d ubiquinol oxidase subunit III PBPRA3239 18 COG3105 COG3105, Uncharacterized protein conserved in bacteria Function unknown 54310637 Common - D-fructose-6-phosphate amidotransferase PBPRA3599 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 54308662 Common hemH phosphoribosylaminoimidazole-succinocarboxamide synthase PBPRA1469 100 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 54307304 Common hemG protoporphyrinogen oxidase PBPRA0067 33 COG4635 HemG, Flavodoxin Energy production and conversion / Coenzyme metabolism 54310066 Common - putative cytochrome PBPRA2950 19 COG2863 COG2863, Cytochrome c553 Energy production and conversion 54310607 Common - Putative carbonic anhydrase, family 3 PBPRA3569 186 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 54308948 Common - hypothetical protein PBPRA1759 11 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 54309039 Common potB spermidine/putrescine ABC transporter membrane protein PBPRA1853 214 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 54307639 Common - acetolactate synthase 3 catalytic subunit PBPRA0425 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 54309970 Common - putative arylesterase PBPRA2816 102 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 54307482 Common - cystathionine gamma-synthase PBPRA0261 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 54309993 Common - putative HemK protein, Methylase of polypeptide chain release factors PBPRA2844 213 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 54310427 Common - putative hflC protein PBPRA3347 197 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 54309717 Common - hypothetical protein PBPRA2556 22 COG4890 COG4890, Predicted outer membrane lipoprotein Function unknown 54309899 Common - hypothetical membrane protein PBPRA2745 39 COG1288 COG1288, Predicted membrane protein Function unknown 54309909 Common - putative tricarboxylic transport TctB PBPRA2755 7 None None None 54309982 Common - Putative threonine efflux protein PBPRA2833 25 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54307534 Common rpsL 30S ribosomal protein S12 PBPRA0313 237 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 54309502 Common asnC asparaginyl-tRNA synthetase PBPRA2335 176 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 54308472 Nonpathogen - hypothetical protein PBPRA1279 1 COG4402 COG4402, Uncharacterized protein conserved in bacteria Function unknown 54308207 Common - hypothetical dksA-type zinc finger protein PBPRA1014 4 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 54310396 Common - hypothetical protein PBPRA3316 12 COG3061 OapA, Cell envelope opacity-associated protein A Cell envelope biogenesis, outer membrane 54310071 Common lpxB lipid-A-disaccharide synthase PBPRA2955 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 54309186 Common - 3-oxoacyl-(acyl carrier protein) synthase III PBPRA2001 202 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 161936310 Common - ATP-dependent RNA helicase HrpA PBPRA1757 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 54309778 Common - hypothetical protein PBPRA2617 34 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 54308093 Common - putative chemotaxis protein methyltransferase CheR PBPRA0900 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 54307824 Common - putative lipid carrier protein PBPRA0621 34 COG3154 COG3154, Putative lipid carrier protein Lipid metabolism 54309387 Common - hypothetical phosphatase PBPRA2209 24 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 54309684 Common - hypothetical protein PBPRA2520 148 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 54308997 Common - hypothetical protein PBPRA1810 7 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 54308076 Common - putative DNA methylase HsdM PBPRA0882 154 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 54308879 Common - Putative yohK (seritonin transporter) PBPRA1690 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 54309260 Common artM arginine transporter permease subunit ArtM PBPRA2076 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 54308162 Common - putative cysteine synthase/cystathionine (CysK) PBPRA0969 218 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 54310237 Common - Holliday junction resolvase-like protein PBPRA3140 80 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 54309236 Common - hypothetical PTS system, cellobiose-specific IIB component PBPRA2052 31 COG1440 CelA, Phosphotransferase system cellobiose-specific component IIB Carbohydrate transport and metabolism 54309555 Common - outer membrane-specific lipoprotein transporter subunit LolE PBPRA2388 152 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 54309670 Common - intracellular septation protein A PBPRA2506 92 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 54308315 Common - hypothetical protein PBPRA1122 15 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 54309189 Common - hypothetical amidase PBPRA2004 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 54307621 Common - D-lactate dehydrogenase PBPRA0407 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 54310653 Common - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA PBPRA3615 192 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 54309235 Common - putative homoserine/homoserine lactoneefflux protein PBPRA2051 115 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54309936 Common - putative mutase PBPRA2782 73 COG1015 DeoB, Phosphopentomutase Carbohydrate transport and metabolism 54308633 Common - putative RNA methyltransferase, TrmH family PBPRA1440 21 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 54307649 Common - putative Dihydroneopterin aldolase PBPRA0436 110 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 54309396 Common - hypothetical protein PBPRA2220 53 COG0784 CheY, FOG: CheY-like receiver Signal transduction mechanisms 54308982 Common - hypothetical protein PBPRA1793 2 None None None 54308961 Common - hypothetical protein PBPRA1772 6 None None None 54310297 Common - hypothetical protein PBPRA3209 15 COG4701 COG4701, Uncharacterized protein conserved in bacteria Function unknown 54308705 Common - hypothetical esterase of the alpha-betahydrolase superfamily PBPRA1512 30 COG4667 COG4667, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 54310084 Common rpsB 30S ribosomal protein S2 PBPRA2968 225 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 54310355 Common maf Maf-like protein PBPRA3267 198 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 54308839 Common - conservaed hypothetical protein PBPRA1646 12 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54309379 Common - putative alanine dehydrogenase PBPRA2201 164 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 54309519 Common - putative transcription regulator, MarR family PBPRA2352 34 COG1846 MarR, Transcriptional regulators Transcription 54307758 Common - homoserine kinase PBPRA0553 124 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 54308830 Common - hypothetical transposase PBPRA1637 6 None None None 54307308 Common - transposase and inactivated derivative PBPRA0081 29 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309089 Common - hypothetical protein PBPRA1903 2 None None None 54310231 Common - S-adenosylmethionine synthetase PBPRA3134 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 54310254 Common - hypothetical HD-GYP hydrolase domain containing protein PBPRA3166 118 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 54307375 Common - hypothetical cell division protein FtsX PBPRA0154 120 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 54308178 Nonpathogen - hypothetical protein PBPRA0985 2 None None None 54307453 Common - putative transcriptional regulator CpxR PBPRA0232 215 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54309822 Common - hypothetical protein PBPRA2662 11 None None None 54309619 Common - phosphoserine aminotransferase PBPRA2455 116 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 54310340 Common - hypothetical protein PBPRA3252 28 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 54308744 Common - hypothetical nucleoside-diphosphate-sugar epimerase PBPRA1551 97 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54308722 Common - putative PTR2 family transport protein PBPRA1529 81 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 54308698 Common - Putative DNA-damage-inducible protein J PBPRA1505 2 None None None 54308850 Common - putative Uup, ATPase components of ABC transporters with duplicated ATPase domains PBPRA1657 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 161936285 Common - ribosome-associated GTPase PBPRA3371 163 COG1162 COG1162, Predicted GTPases General function prediction only 54307336 Common - hypothetical protein PBPRA0115 139 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 54309241 Common - hypotehtical protein PBPRA2057 6 COG3909 COG3909, Cytochrome c556 Energy production and conversion 54309646 Common - putative pseudouridine synthase family 1 protein PBPRA2482 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 54310198 Common - hypothetical protein PBPRA3100 99 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 54309005 Common - hypothetical protein PBPRA1818 2 None None None 54308197 Common - putative cation efflux system transmembrane protein PBPRA1004 165 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54307362 Common - putative transcriptional regulator, LysR family PBPRA0141 188 COG0583 LysR, Transcriptional regulator Transcription 54308829 Nonpathogen - hypothetical protein PBPRA1636 1 None None None 54308062 Common ligA NAD-dependent DNA ligase LigA PBPRA0867 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 54310168 Common - DNA mismatch repair protein PBPRA3070 204 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 54308323 Nonpathogen - hypothetical protein PBPRA1130 1 None None None 54309042 Common - putative permidine/putrescine ABC transporter,periplasmic spermidine/putrescine-binding protein PBPRA1856 143 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 54308435 Common - hypothetical protein PBPRA1242 33 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 54308934 Common - hypothetical protein PBPRA1745 7 None None None 54310279 Common - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase PBPRA3191 222 COG1049 AcnB, Aconitase B Energy production and conversion 54309228 Common - putative transposase PBPRA2043 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307741 Common - hypothetical protein PBPRA0536 148 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 54309149 Common - putative Cold shock-like protein PBPRA1963 182 COG1278 CspC, Cold shock proteins Transcription 54308339 Common - hypothetical protein PBPRA1146 41 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 54310460 Common - putative transcriptional regulator, LysR family PBPRA3393 168 COG0583 LysR, Transcriptional regulator Transcription 54308226 Common - putative beta-N-acetylhexosaminidase PBPRA1033 43 COG3525 Chb, N-acetyl-beta-hexosaminidase Carbohydrate transport and metabolism 54309785 Common - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase PBPRA2624 77 COG1165 MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Coenzyme metabolism 54308646 Common - alkaline serine protease PBPRA1453 134 COG4935 COG4935, Regulatory P domain of the subtilisin-like proprotein convertases and other proteases Posttranslational modification, protein turnover, chaperones 54308353 Common - putative alanine dehydrogenase PBPRA1160 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 54309178 Common - diaminopropionate ammonia-lyase PBPRA1993 100 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 54310178 Common - CTP synthetase PBPRA3080 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 54308480 Common - hypothetical long-chain-fatty-acid-CoAligase PBPRA1287 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 54309082 Common - hypothetical transcription regulator protein PBPRA1896 18 COG0583 LysR, Transcriptional regulator Transcription 54307818 Common rpsO 30S ribosomal protein S15 PBPRA0615 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 54310272 Common - putative ABC transporter, periplasmic iron-compound-binding protein PBPRA3184 106 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 54307543 Common rplW 50S ribosomal protein L23 PBPRA0322 218 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 54308642 Common - hypothetical protein PBPRA1449 54 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54308200 Common - putative cation efflux family protein PBPRA1007 175 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 54310616 Common - hypothetical protein PBPRA3578 47 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 54307771 Common xerD site-specific tyrosine recombinase XerD PBPRA0566 227 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 54309153 Common - putative carboxymuconolactone decarboxylase family protein PBPRA1967 98 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 54307801 Common - carbamoyl phosphate synthase small subunit PBPRA0596 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 54307499 Common - hypothetical fimbrial assembly protein PilP PBPRA0278 38 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 54307410 Common - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase PBPRA0189 208 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 54310648 Common - F0F1 ATP synthase subunit A PBPRA3610 207 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 54309874 Common - chorismate synthase PBPRA2714 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 54310598 Common - glutathione reductase PBPRA3546 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 54307981 Common - Putative cytosine/adenosine deaminase PBPRA0786 207 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 54310548 Common - putative nitrogen regulation protein PBPRA3495 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54309103 Common - hypothetical protein PBPRA1917 45 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 54310390 Common cysN sulfate adenylyltransferase subunit 1 PBPRA3310 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 54308189 Common - hypothetical protein PBPRA0996 2 None None None 54309244 Nonpathogen - hypothetical protein PBPRA2060 1 None None None 54309512 Common - regulatory protein UhpC PBPRA2345 165 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 54310476 Common - putative Dihydrouridine synthase PBPRA3410 211 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 54308558 Common - hypothetical protein PBPRA1365 24 COG3369 COG3369, Uncharacterized conserved protein Function unknown 54307525 Common - hypothetical protein PBPRA0304 14 COG3529 COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain General function prediction only 54307985 Common - putative transposase PBPRA0790 74 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309830 Common - hypothetical protein PBPRA2670 31 None None None 54308604 Common - putative L-lactate permease PBPRA1411 104 COG1620 LldP, L-lactate permease Energy production and conversion 54307767 Common - ATP-dependent RNA helicase SrmB PBPRA0562 244 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 54310287 Common - quinolinate phosphoribosyltransferase PBPRA3199 204 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 54308045 Common - nitrate/nitrite sensor protein NarQ PBPRA0850 148 COG3850 NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific Signal transduction mechanisms 54310213 Common - glycine cleavage system protein H PBPRA3116 187 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 54310009 Common - hypothetical protein PBPRA2884 21 None None None 54307662 Common - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase PBPRA0449 142 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 54309742 Common - hypothetical protein PBPRA2581 12 COG3314 COG3314, Uncharacterized protein conserved in bacteria Function unknown 54309171 Common - hypothetical protein PBPRA1986 20 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 54309877 Common - putative transcriptional regulator PBPRA2717 105 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 54308902 Nonpathogen - hypothetical protein PBPRA1713 1 None None None 54310397 Common - putative peptidyl-prolyl cis-trans isomerase PBPRA3317 135 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 54309252 Common - hypothetical protein PBPRA2068 3 None None None 54308192 Common - hypothetical protein PBPRA0999 2 None None None 54310117 Common - hypothetical transcriptional regulator PBPRA3001 192 COG0583 LysR, Transcriptional regulator Transcription 54309131 Common - hypothetical protein PBPRA1945 48 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 54307417 Common - hypothetical protein PBPRA0196 18 COG1700 COG1700, Uncharacterized conserved protein Function unknown 54309191 Common - hypothetical protein PBPRA2006 14 None None None 54308912 Common - hypothetical protein PBPRA1723 35 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 54307493 Common - Putative peroxiredoxin/glutaredoxin family protein PBPRA0272 112 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 54307872 Common - hypothetical protein PBPRA0669 23 COG4455 ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion General function prediction only 54308000 Common - 1-deoxy-D-xylulose-5-phosphate synthase PBPRA0805 229 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 54309563 Common - putative NADH dehydrogenase PBPRA2396 181 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 54308017 Nonpathogen - hypothetical protein PBPRA0822 1 None None None 54310208 Common - hypothetical LysR-like regular protein PBPRA3111 89 COG0583 LysR, Transcriptional regulator Transcription 54308588 Common - putative methyl-accepting chemotaxis protein PBPRA1395 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54308674 Common - inner membrane protein YjeH PBPRA1481 74 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 54307344 Common - delta-aminolevulinic acid dehydratase PBPRA0123 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 54307974 Common xseA exodeoxyribonuclease VII large subunit PBPRA0779 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 54308616 Common - hypothetical protein PBPRA1423 63 COG2391 COG2391, Predicted transporter component General function prediction only 54309160 Common - Hypothetical oxidoreductase PBPRA1975 62 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 54309451 Common - putative sodium/glucose cotransporter PBPRA2283 168 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 54309123 Common - hypothetical protein PBPRA1937 11 None None None 54308119 Common fliI flagellum-specific ATP synthase PBPRA0926 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 54309669 Common - Conserved hypothetical outer membrane protein PBPRA2505 164 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54309288 Common - Hypothetical hemin ABC transporter, ATP-binding protein HutD PBPRA2108 249 COG4559 COG4559, ABC-type hemin transport system, ATPase component Inorganic ion transport and metabolism 54310381 Common metH B12-dependent methionine synthase PBPRA3294 178 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 161936342 Common recF recombination protein F PBPRA0010 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 54307240 Common - putative inner membrane protein translocase component YidC PBPRA0003 213 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 54307331 Common thiH thiamine biosynthesis protein ThiH PBPRA0110 55 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 54308051 Common - hypothetical protein PBPRA0856 19 COG4446 COG4446, Uncharacterized protein conserved in bacteria Function unknown 54309920 Common - hypothetical formate transporter 1 PBPRA2766 91 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 54310221 Common - putative D-3-phosphoglycerate dehydrogenase PBPRA3124 229 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 54307338 Common - hypothetical protein PBPRA0117 47 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 54309116 Common - guanine deaminase PBPRA1930 162 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 54307273 Common flgI flagellar basal body P-ring protein PBPRA0036 104 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 54308806 Nonpathogen - hypothetical protein PBPRA1613 1 None None None 54308026 Common - putative transcriptional regulator PBPRA0831 221 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 54309518 Common - hypothetical protein PBPRA2351 74 COG2989 COG2989, Uncharacterized protein conserved in bacteria Function unknown 54309307 Common - hypothetical protein PBPRA2127 9 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 54310301 Common - hypothetical cell division protein FtsQ PBPRA3213 88 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 54309133 Nonpathogen - hypothetical protein PBPRA1947 1 None None None 54307477 Common - DNA-binding transcriptional regulator CytR PBPRA0256 130 COG1609 PurR, Transcriptional regulators Transcription 54307509 Common - para-aminobenzoate synthase component II PBPRA0288 238 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 54308055 Common - putative TyrA protein PBPRA0860 53 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 54309637 Common - transcriptional regulator CysB-like protein PBPRA2473 187 COG0583 LysR, Transcriptional regulator Transcription 54308278 Common - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein PBPRA1085 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 54308848 Common - hypothetical protein PBPRA1655 12 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 54309230 Common - hypothetical ribonuclease PBPRA2046 24 COG3719 Rna, Ribonuclease I Translation, ribosomal structure and biogenesis 54310054 Common - putative transmembrane ABC transporterprotein PBPRA2938 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 54307329 Common - Putative molybdopterin biosynthesis MoeB protein PBPRA0108 211 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 54309709 Common - hypothetical protein PBPRA2548 96 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 54310249 Common trmB tRNA (guanine-N(7))-methyltransferase PBPRA3152 179 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 54308467 Common - putative Na+/proline symporter PBPRA1274 178 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 54310431 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase PBPRA3351 213 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 54309173 Common - putative pyruvate oxidoreductase PBPRA1988 125 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 54310415 Nonpathogen - putative transposase PBPRA3335 2 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309221 Common - putative DnaK-related protein PBPRA2036 217 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 54309530 Common - putative trimethylamine-N-oxide reductase PBPRA2363 161 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54309554 Common - hypothetical protein PBPRA2387 48 COG3216 COG3216, Uncharacterized protein conserved in bacteria Function unknown 161936279 Common tuf elongation factor Tu PBPRA3439 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 54309596 Common - putative pyruvate kinase II PBPRA2431 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 54310336 Common - putative ABC transporter, ATP-binding protein PBPRA3248 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 54307564 Common - 30S ribosomal protein S11 PBPRA0343 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 54309198 Common - hypothetical protein PBPRA2013 19 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 54310240 Common - Predicted enzyme with a TIM-barrel fold PBPRA3143 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 54308971 Common - hypothetical protein PBPRA1782 2 None None None 54307781 Common - DNA mismatch repair protein PBPRA0576 28 COG3066 MutH, DNA mismatch repair protein DNA replication, recombination, and repair 54309492 Common - hypothetical protein B PBPRA2325 54 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 54308259 Common purU formyltetrahydrofolate deformylase PBPRA1066 220 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 54308696 Nonpathogen - hypothetical protein PBPRA1503 1 None None None 54308410 Common - Hypothetical sensor histidine kinase PBPRA1217 137 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 161936287 Common - single-strand DNA-binding protein PBPRA3289 213 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 54309860 Common - hypothetical protein PBPRA2700 11 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 54310256 Common - ATP-dependent RNA helicase HrpB PBPRA3168 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 54309262 Common - putative transcriptional regulator, LacI family PBPRA2078 128 COG1609 PurR, Transcriptional regulators Transcription 54309968 Common - hypothetical permease PBPRA2814 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 54307869 Common - hypothetical protein PBPRA0666 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 54310531 Common - putative type II secretory pathway, pseudopilin EpsG PBPRA3478 109 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 54308714 Common emrD multidrug resistance protein D PBPRA1521 225 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54308924 Common - hypothetical protein PBPRA1735 38 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 54309384 Common - hypothetical phosphatase/phosphohexomutase PBPRA2206 173 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 54308096 Common flgD flagellar basal body rod modification protein PBPRA0903 108 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 54307673 Common - hypothetical protein PBPRA0460 104 COG1609 PurR, Transcriptional regulators Transcription 54310146 Common - hypothetical protein PBPRA3036 3 None None None 54310082 Common pyrH uridylate kinase PBPRA2966 233 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 54310020 Common lipB lipoyltransferase PBPRA2895 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 54308369 Nonpathogen - hypothetical protein PBPRA1176 1 None None None 54308889 Nonpathogen - hypothetical protein PBPRA1700 1 None None None 54308164 Common - Putative transport ATP-binding protein MsbA PBPRA0971 239 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 54309609 Common - putative peptide ABC transporter, ATP-binding protein PBPRA2444 249 COG4170 SapD, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 54308141 Common - Putative heme exporter protein A PBPRA0948 249 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 54307708 Common - putative Phosphotransferase system cellobiose-specific component IIC PBPRA0496 38 COG1455 CelB, Phosphotransferase system cellobiose-specific component IIC Carbohydrate transport and metabolism 54307360 Common - hypothetical protein PBPRA0139 43 COG3434 COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains Signal transduction mechanisms 54310133 Common - hypothetical sigma-54 modulation protein PBPRA3023 28 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 54309154 Common - hypothetical protein PBPRA1968 11 None None None 54307556 Common rplF 50S ribosomal protein L6 PBPRA0335 233 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 54308841 Common - hypothetical protein PBPRA1648 121 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 54307254 Common - putative flagellar motor switch protein PBPRA0017 118 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 54309151 Common - hypothetical protein PBPRA1965 107 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54308355 Common - Hypothetical cell division protein FtsK PBPRA1162 198 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 54307369 Common - hypothetical protein PBPRA0148 19 None None None 54307813 Common - hypothetical protein PBPRA0610 177 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 54310032 Common - putative uracil permease PBPRA2907 124 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 54307638 Common - putative long-chain-fatty-acid-CoAligase PBPRA0424 216 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 54309505 Common - hypothetical protein PBPRA2338 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 54309917 Common - hypothetical signal transduction histidine kinase regulating citrate/malate metabolism PBPRA2763 111 COG3290 CitA, Signal transduction histidine kinase regulating citrate/malate metabolism Signal transduction mechanisms 54307405 Common ompR osmolarity response regulator PBPRA0184 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 54310310 Common - putative cell division protein FtsL PBPRA3222 37 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 54309929 Common - hypothetical protein yhfZ PBPRA2775 12 COG1802 GntR, Transcriptional regulators Transcription 54307455 Common pfkA 6-phosphofructokinase PBPRA0234 161 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 54308120 Common fliJ flagellar biosynthesis chaperone PBPRA0927 23 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 54308064 Common - hypothetical protein PBPRA0869 29 COG5433 COG5433, Transposase DNA replication, recombination, and repair 54310309 Common - putative division protein FtsI; penicillin-binding protein PBPRA3221 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 54310206 Nonpathogen - hypothetical protein PBPRA3108 2 None None None 54307798 Common - putative peptidyl-prolyl cis-trans isomerase, FKBP-type PBPRA0593 132 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 54308419 Common - hypothetical protein PBPRA1226 114 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54308495 Common - hypothetical protein PBPRA1302 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 54309588 Common - hypothetical sensor protein PhoQ PBPRA2422 214 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54307583 Common - homoserine O-succinyltransferase PBPRA0369 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 54309527 Common - hypothetical ykgG family protein PBPRA2360 70 COG1556 COG1556, Uncharacterized conserved protein Function unknown 54308228 Common fur ferric uptake regulator PBPRA1035 197 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 54307480 Common - putative malate oxidoreductase PBPRA0259 202 COG0281 SfcA, Malic enzyme Energy production and conversion 54308955 Common - putative NAD-glutamate dehydrogenase PBPRA1766 77 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 54309972 Common - hypothetical oxidoreductase, short-chain dehydrogenase/reductase family PBPRA2818 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 54310173 Common truD tRNA pseudouridine synthase D PBPRA3075 88 COG0585 COG0585, Uncharacterized conserved protein Function unknown 54308898 Common - hypothetical transposase PBPRA1709 5 None None None 54309277 Common - hypothetical transposase PBPRA2097 19 None None None 54309769 Common - fatty acid metabolism regulator PBPRA2608 51 COG2186 FadR, Transcriptional regulators Transcription 54310525 Common - putative general secretion pathway protein M PBPRA3472 20 COG3149 PulM, Type II secretory pathway, component PulM Intracellular trafficking and secretion 54307959 Common hisS histidyl-tRNA synthetase PBPRA0764 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54307806 Common greA transcription elongation factor GreA PBPRA0601 202 COG0782 GreA, Transcription elongation factor Transcription 54307618 Common - putative survival protein SurA PBPRA0404 156 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 54310092 Common - hypothetical protein PBPRA2976 7 None None None 54308772 Common - hypothetical protein PBPRA1579 6 None None None 161936302 Common grxA glutaredoxin 1 PBPRA2419 35 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 161936336 Common aroK shikimate kinase I PBPRA0280 198 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 54307579 Common - hypothetical transposase PBPRA0358 26 None None None 54309270 Common - putative oxidoreductase PBPRA2086 56 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 54309395 Common - hypothetical protein PBPRA2217 59 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 54307713 Common - hypothetical protein PBPRA0501 33 COG2979 COG2979, Uncharacterized protein conserved in bacteria Function unknown 54308640 Common - hypothetical protein PBPRA1447 17 None None None 54309664 Common - hypothetical Flp pilus assembly protein TadB PBPRA2500 74 COG4965 TadB, Flp pilus assembly protein TadB Intracellular trafficking and secretion 54310157 Common - glutamate--cysteine ligase PBPRA3047 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 54310018 Common - putative D-alanyl-D-alanine carboxypeptidase PBPRA2893 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 54309549 Common - 3-deoxy-manno-octulosonate cytidylyltransferase PBPRA2382 144 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 54308424 Common - periplasmic sensory protein associated with the TorRS two-component regulatory system PBPRA1231 23 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 54309814 Common - hypothetical protein PBPRA2654 21 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 54310488 Common - putative DNA-binding protein HU-alpha PBPRA3422 212 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 54308367 Common - hypothetical protein PBPRA1174 60 COG1295 Rbn, Predicted membrane protein Function unknown 54308656 Common - putative haloalkane dehalogenase PBPRA1463 156 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54307924 Common - putative phosphate ABC transporter, permease protein PBPRA0729 226 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 54309338 Common - putative initiation factor IF3 PBPRA2158 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 54309679 Common - hypothetical GGDEF family protein PBPRA2515 174 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54308664 Common - hypothetical transcriptional regulator, LysR family PBPRA1471 137 COG0583 LysR, Transcriptional regulator Transcription 54309886 Common - hypothetical transcriptional regulator PBPRA2732 157 COG0583 LysR, Transcriptional regulator Transcription 54309094 Common - putative inosine-guanosine kinase PBPRA1908 48 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 54308395 Common - putative deoxyribonuclease PBPRA1202 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 54308880 Common - hypothetical protein PBPRA1691 58 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 54308245 Common - hypothetical protein PBPRA1052 4 None None None 54309805 Common - hypothetical response regulator PBPRA2645 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54307275 Common - Hypothetical flagellar hook-associated protein PBPRA0038 125 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 54310292 Common - hypothetical dephospho-CoA kinase PBPRA3204 193 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 54308579 Nonpathogen - hypothetical protein PBPRA1386 3 None None None 54310107 Common - putative aminotransferase, class V PBPRA2991 238 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 54308402 Common - hypothetical protein PBPRA1209 2 None None None 54307944 Common - hypothetical transcriptional regulator PBPRA0749 174 COG1959 COG1959, Predicted transcriptional regulator Transcription 54308454 Common - Putative nitrate reductase, formate dependent (NrfD) PBPRA1261 25 COG3301 NrfD, Formate-dependent nitrite reductase, membrane component Inorganic ion transport and metabolism 54307292 Common glyS glycyl-tRNA synthetase subunit beta PBPRA0055 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 54309411 Common - putative xanthine dehydrogenase, XdhA subunit PBPRA2243 122 COG4630 XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A Nucleotide transport and metabolism 54307570 Common - putative periplasmic protein involved in polysaccharide export PBPRA0349 81 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 54309910 Common - putative tricarboxylic transport TctA PBPRA2756 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 54307822 Common - putative protease PBPRA0619 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 54308260 Common - hypothetical protein PBPRA1067 7 None None None 54309426 Common - hypothetical protein PBPRA2258 5 None None None 54308862 Common - hypothetical protein PBPRA1669 64 None None None 54307439 Common - Putative O-antigen ligase PBPRA0218 10 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 54307299 Common - Putative zinc-binding alcohol dehydrogenase PBPRA0062 97 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 54310201 Common - hypothetical protein PBPRA3103 2 None None None 54307748 Common - putative Fe-S oxidoreductase PBPRA0543 91 COG1242 COG1242, Predicted Fe-S oxidoreductase General function prediction only 54308552 Common - hypothetical protein PBPRA1359 6 COG5614 COG5614, Bacteriophage head-tail adaptor General function prediction only 54308986 Common - hypothetical protein PBPRA1799 66 COG1479 COG1479, Uncharacterized conserved protein Function unknown 54310002 Common - hypothetical transglycosylase PBPRA2877 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 54307397 Nonpathogen - hypothetical protein PBPRA0176 7 COG3584 COG3584, Uncharacterized protein conserved in bacteria Function unknown 54309414 Common - guanine deaminase PBPRA2246 171 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 54308977 Nonpathogen - hypothetical transposase PBPRA1788 3 None None None 54310150 Common rimM 16S rRNA-processing protein PBPRA3040 173 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 54309681 Common - DNA polymerase III subunit epsilon PBPRA2517 80 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 54309329 Common - Hypothetical outer membrane protein PBPRA2149 72 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 54309200 Common - hypothetical protein PBPRA2015 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 54310194 Nonpathogen - hypothetical protein PBPRA3096 1 None None None 54307876 Common - putative ATPase with chaperone activity PBPRA0673 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 54307952 Common - aminopeptidase B PBPRA0757 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 54307733 Common - putative permease PBPRA0528 104 COG0628 PerM, Predicted permease General function prediction only 54309015 Common - hypothetical oxidoreductase, short chaindehydrogenase/reductase family PBPRA1829 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 54307606 Common - hypothetical transposase PBPRA0392 19 None None None 54307962 Common engA GTP-binding protein EngA PBPRA0767 240 COG1160 COG1160, Predicted GTPases General function prediction only 54310045 Common - putative hydroxyacylglutathione hydrolase GloB PBPRA2920 150 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 54310472 Common - acetyl-CoA carboxylase biotin carboxylase subunit PBPRA3406 233 COG0439 AccC, Biotin carboxylase Lipid metabolism 54308970 Common - hypothetical protein PBPRA1781 3 COG3710 CadC, DNA-binding winged-HTH domains Transcription 54308547 Common - hypothetical terminase encoded by prophage PBPRA1354 35 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 54307946 Common - scaffold protein PBPRA0751 152 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 54309361 Common - hypothetical protein PBPRA2182 58 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 54310562 Common - putative RarD PBPRA3509 96 COG2962 RarD, Predicted permeases General function prediction only 54308107 Common - flagellar protein FlaG PBPRA0914 12 COG1334 FlaG, Uncharacterized flagellar protein FlaG Cell motility and secretion 54308991 Common - putative type I restriction enzyme R protein PBPRA1804 150 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 54309520 Common - putative transcriptional regulator, LysR family PBPRA2353 57 COG0583 LysR, Transcriptional regulator Transcription 54308891 Common - hypothetical protein PBPRA1702 43 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309457 Common - hypothetical protein PBPRA2289 14 None None None 54309351 Common - urocanate hydratase PBPRA2172 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 54309844 Common - hypothetical protein PBPRA2684 29 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 54309209 Common - nucleotide-binding protein PBPRA2024 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 54308048 Common - Putative periplasmic nitrate reductase PBPRA0853 184 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54308080 Common - putative type I restriction enzyme HsdR PBPRA0886 123 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 54310605 Common - transposase and inactivated derivative PBPRA3553 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309047 Common - putative formate dehydrogenase, iron-sulfur subunit PBPRA1861 168 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 54308597 Common - hypothetical permease component of C4 dicarboxylatetransporter PBPRA1404 129 COG4664 FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component Secondary metabolites biosynthesis, transport, and catabolism 54310405 Common - tRNA-dihydrouridine synthase A PBPRA3325 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 54308581 Nonpathogen - hypothetical transposase PBPRA1388 4 None None None 54310442 Common - putative methyl-accepting chemotaxis protein PBPRA3375 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54309632 Common - hypothetical protein PBPRA2468 32 COG0730 COG0730, Predicted permeases General function prediction only 54310569 Common - hypothetical protein PBPRA3516 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 54307902 Common - hypothetical fimbrial assembly protein PilE PBPRA0699 43 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 54309866 Nonpathogen - hypothetical protein PBPRA2706 2 None None None 54308148 Common - Hypothetical cytochrome c-type biogenesis protein PBPRA0955 55 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 54307306 Common - transposase and inactivated derivative PBPRA0079 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309590 Common - acyl-CoA dehydrogenase PBPRA2424 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 54309618 Common - hypothetical lipoprotein PBPRA2454 7 COG1750 COG1750, Archaeal serine proteases General function prediction only 54308574 Common - hypothetical protein PBPRA1381 228 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 54310138 Common - hypothetical DNA-binding protein PBPRA3028 44 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 54310469 Common - acetyl-CoA synthetase PBPRA3403 215 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 54309421 Common - hypothetical ABC transporter permease PBPRA2253 218 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54308360 Common - Putative proton/glutamate symporter PBPRA1167 164 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 161936331 Common - xylose isomerase PBPRA0457 68 COG2115 XylA, Xylose isomerase Carbohydrate transport and metabolism 54310219 Common - ribose-5-phosphate isomerase A PBPRA3122 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 54309327 Common - putative Na+/H+ antiporter PBPRA2147 48 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 161936326 Common deoA thymidine phosphorylase PBPRA0631 118 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 54308037 Common - hypothetical protein PBPRA0842 2 None None None 54307420 Common pyrE orotate phosphoribosyltransferase PBPRA0199 151 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 54309653 Common - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase PBPRA2489 220 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 54309071 Common - hypothetical protein PBPRA1885 11 None None None 54309374 Common - hypothetical protein PBPRA2196 18 COG3110 COG3110, Uncharacterized protein conserved in bacteria Function unknown 54310635 Common - Hypothetical transcriptional regulator PBPRA3597 5 COG1476 COG1476, Predicted transcriptional regulators Transcription 54309480 Common - hypothetical membrane protein PBPRA2313 100 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 54309824 Common - hypothetical undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase PBPRA2664 32 None None None 54309966 Common - putative PTS system mannose-specific, factor IIC PBPRA2812 23 None None None 54307904 Common - hypothetical protein PBPRA0701 4 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 54310274 Common - putative nitrogen regulatory protein P-II PBPRA3186 188 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 54309550 Common - hypothetical protein PBPRA2383 99 COG2835 COG2835, Uncharacterized conserved protein Function unknown 54308602 Common - conserved hypothetical iron-sulphur protein PBPRA1409 95 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 54309246 Common rihA ribonucleoside hydrolase 1 PBPRA2062 88 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 54310494 Common hemE uroporphyrinogen decarboxylase PBPRA3428 182 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 54308091 Common flgA flagellar basal body P-ring biosynthesis protein FlgA PBPRA0898 18 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 54307325 Common - hypothetical protein PBPRA0104 6 None None None 54310504 Common secE preprotein translocase subunit SecE PBPRA3438 51 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 54310513 Common - putative transposase PBPRA3451 6 None None None 54308794 Nonpathogen - hypothetical protein PBPRA1601 1 None None None 54309500 Common - putative organic radical activating enzyme PBPRA2333 161 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 54310614 Common - hypothetical protein PBPRA3576 39 COG2922 Smg, Uncharacterized protein conserved in bacteria Function unknown 161936312 Common - putative reductase component PBPRA1665 15 COG4693 PchG, Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 54309980 Common - conserved hypothetical protei PBPRA2831 4 None None None 54310403 Common - hypothetical protein PBPRA3323 17 None None None 54307915 Common - hypotehtical exonuclease PBPRA0720 82 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 54310065 Common - putative sodium-dependent transporter PBPRA2949 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 54309704 Common - hypothetical protein PBPRA2542 3 None None None 54310394 Common - putative cAMP-binding proteins PBPRA3314 27 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 54308113 Common - putative sensory box sensor histidine kinase PBPRA0920 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54308980 Common - hypothetical protein PBPRA1791 2 None None None 54309719 Common - putative cytochrome d ubiquinol oxidase, subunit I PBPRA2558 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 54308489 Common - hypothetical transcriptional regulator PBPRA1296 167 COG0583 LysR, Transcriptional regulator Transcription 54309991 Common - hypothetical protein PBPRA2842 59 COG2912 COG2912, Uncharacterized conserved protein Function unknown 54310424 Common - putative sodium-type flagellar protein MotX PBPRA3344 56 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 54309695 Common - putative tryptophan-specific transport protein PBPRA2533 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 54308669 Common - hypothetical amino acid ABC transporter, permease protein PBPRA1476 175 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 54307473 Common - 1,4-dihydroxy-2-naphthoate octaprenyltransferase PBPRA0252 83 COG1575 MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase Coenzyme metabolism 54308172 Common - putative transposase PBPRA0979 54 None None None 54307857 Common - hypothetical TagE protein PBPRA0654 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 54308753 Common - hypothetical protein PBPRA1560 151 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 54307668 Common - DNA topoisomerase IV subunit B PBPRA0455 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 54309725 Common - electron transport complex protein RnfG PBPRA2564 59 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 54309345 Nonpathogen - hypothetical protein PBPRA2166 1 None None None 54307441 Common rfaD ADP-L-glycero-D-mannoheptose-6-epimerase PBPRA0220 215 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 54307847 Nonpathogen - hypothetical transcriptional regulator PBPRA0644 1 COG1396 HipB, Predicted transcriptional regulators Transcription 54307414 Common - hypothetical protein PBPRA0193 54 COG3550 HipA, Uncharacterized protein related to capsule biosynthesis enzymes General function prediction only 54309274 Common - hypothetical protein PBPRA2090 7 None None None 54309305 Common - hypothetical transcriptional regulator, TetR family PBPRA2125 40 COG1309 AcrR, Transcriptional regulator Transcription 54309052 Common - hypothetical protein PBPRA1866 11 None None None 54309620 Common - putative DNA topoisomerase (ATP-hydrolyzing) PBPRA2456 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 54307429 Common coaD phosphopantetheine adenylyltransferase PBPRA0208 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 54308536 Common - hypothetical protein PBPRA1343 32 COG1403 McrA, Restriction endonuclease Defense mechanisms 54308859 Common - putative AMP-binding enzyme PBPRA1666 193 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 54307515 Common - hypothetical protein PBPRA0294 86 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 54309882 Common - hypothetical HlyD family secretion protein PBPRA2722 157 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 54310030 Common - hypothetical protein PBPRA2905 17 COG3308 COG3308, Predicted membrane protein Function unknown 54308625 Common - putative cyclic nucleotide binding protein PBPRA1432 5 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 54309377 Common - Hypothetical protein with chitinase domain PBPRA2199 23 COG3325 ChiA, Chitinase Carbohydrate transport and metabolism 54308497 Common - hypothetical protein PBPRA1304 3 None None None 54309732 Common - Putative sodium-type flagellar protein MotY PBPRA2571 121 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54309036 Common - Hypothetical bax protein PBPRA1850 31 COG2992 Bax, Uncharacterized FlgJ-related protein General function prediction only 54307682 Common - hypothetical isopentenyldiphosphate isomerase PBPRA0469 47 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 54308452 Common - cytochrome c-type protein NrfB PBPRA1259 17 None None None 54309613 Common - hypothetical protein PBPRA2448 23 COG3771 COG3771, Predicted membrane protein Function unknown 54309855 Common - putative transporting ATPase PBPRA2695 31 COG3101 COG3101, Uncharacterized protein conserved in bacteria Function unknown 54308307 Common ruvC Holliday junction resolvase PBPRA1114 195 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 54308691 Common - hypothetical Glutamate decarboxylase PBPRA1498 122 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 54307468 Common - putative toxin transporter PBPRA0247 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 54309297 Common - putative phosphatidylglycerophosphate synthase PBPRA2117 43 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 54308917 Common - putative transcriptional regulator, LysR family PBPRA1728 179 COG0583 LysR, Transcriptional regulator Transcription 54309347 Common - hypothetical protein PBPRA2168 16 COG3097 COG3097, Uncharacterized protein conserved in bacteria Function unknown 54309771 Common - disulfide bond formation protein B PBPRA2610 43 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 54307889 Common - hypothetical protein PBPRA0686 25 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 54309749 Common - hypothetical protein PBPRA2588 4 None None None 54307312 Common - ketol-acid reductoisomerase PBPRA0085 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 54308332 Common - hypothetical protein PBPRA1139 64 COG2850 COG2850, Uncharacterized conserved protein Function unknown 54308325 Common oppB oligopeptide transporter permease PBPRA1132 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 54309369 Common - putative sulfite reductase PBPRA2191 60 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 54307686 Common - aspartate carbamoyltransferase regulatory subunit PBPRA0473 64 COG1781 PyrI, Aspartate carbamoyltransferase, regulatory subunit Nucleotide transport and metabolism 54309184 Common - putative transporter, NadC family PBPRA1999 168 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 54307966 Common - hypothetical methyl-accepting chemotaxis protein PBPRA0771 135 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54310453 Common - putative ribosomal protein S6 modification protein PBPRA3386 143 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 54308462 Common - hypothetical transposase PBPRA1269 21 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 54307833 Common - deoxyribose-phosphate aldolase PBPRA0630 137 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 54308894 Common - hypothetical transposase PBPRA1705 19 None None None 54308724 Common - DNA polymerase II PBPRA1531 65 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 54309787 Common - aminotransferase AlaT PBPRA2626 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 54308783 Common - hypotethical transposase PBPRA1590 63 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309783 Common - O-succinylbenzoate synthase PBPRA2622 73 COG1441 MenC, O-succinylbenzoate synthase Coenzyme metabolism 54310004 Common - putative phoH family protein PBPRA2879 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 54310191 Common rseB periplasmic negative regulator of sigmaE PBPRA3093 48 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 54309316 Common - hypothetical protein PBPRA2136 8 None None None 54309854 Common - hypothetical protein PBPRA2694 18 None None None 54309254 Common - hypothetical protein PBPRA2070 6 None None None 54310613 Common - putative DNA topoisomerase I-related protein PBPRA3575 136 COG0551 TopA, Zn-finger domain associated with topoisomerase type I DNA replication, recombination, and repair 54308158 Nonpathogen - hypothetical protein PBPRA0965 1 None None None 54310529 Common - putative type II secretory pathway, pseudopilin EpsI PBPRA3476 17 None None None 54308087 Common - hypothetical protein PBPRA0894 12 COG5616 COG5616, Predicted integral membrane protein Function unknown 54308813 Nonpathogen - hypothetical protein PBPRA1620 1 None None None 54307720 Common - hypothetical transposase PBPRA0515 19 None None None 54309017 Common - putative cytochrome c oxidase, subunit CcoN PBPRA1831 146 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 54307990 Common glyA serine hydroxymethyltransferase PBPRA0795 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 54310509 Common - hypothetical protein PBPRA3447 6 None None None 54310578 Common - hypothetical protein PBPRA3525 10 None None None 54308903 Nonpathogen - hypothetical protein PBPRA1714 1 None None None 54309080 Common - hypothetical protein PBPRA1894 8 None None None 54309210 Common - hypothetical DnaJ-class molecular chaperone with C-terminal Zn finger domain PBPRA2025 13 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 54308648 Common - hypothetical protein PBPRA1455 4 None None None 54307448 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase PBPRA0227 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 54308584 Common - putative phosphate ABC transporter, ATP-binding protein PBPRA1391 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 54307541 Common rplC 50S ribosomal protein L3 PBPRA0320 242 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 54307603 Common - putative immunogenic protein PBPRA0389 90 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 54309049 Common - hypothetical protein PBPRA1863 2 None None None 54309478 Common - putative transmembrane protein PBPRA2311 182 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 54308345 Common clpA ATP-dependent Clp protease ATP-binding subunit PBPRA1152 220 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 54309476 Common - hypothetical protein PBPRA2309 19 None None None 54307549 Common - putative ribosomal protein L29 PBPRA0328 159 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 54308742 Common - hypothetical protein PBPRA1549 8 None None None 54308763 Common - hypothetical protein PBPRA1570 11 COG3596 COG3596, Predicted GTPase General function prediction only 54310261 Common - putative polyA polymerase PBPRA3173 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 54307977 Common - putative p-aminobenzoyl-glutamatetransporter PBPRA0782 42 COG2978 AbgT, Putative p-aminobenzoyl-glutamate transporter Coenzyme metabolism 54308533 Common - hypothetical protein PBPRA1340 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310596 Common - guanosine pentaphosphate phosphohydrolase PBPRA3543 182 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 54308131 Common - Putative MinD-related protein PBPRA0938 146 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 54309140 Common - hypothetical protein PBPRA1954 4 COG1714 COG1714, Predicted membrane protein/domain Function unknown 54309028 Common - putative D-alanyl-D-alanine carboxypeptidase PBPRA1842 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 54309798 Common clpP ATP-dependent Clp protease proteolytic subunit PBPRA2637 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 54307664 Common - Putative MutT/nudix family protein PBPRA0451 115 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 54308294 Common - Putative potassium channel PBPRA1101 104 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 54307693 Common - putative beta-mannosidase precursor PBPRA0480 38 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 54307837 Common - putative SerB-cotransposed membrane protein precursor PBPRA0634 20 COG3726 AhpA, Uncharacterized membrane protein affecting hemolysin expression General function prediction only 54309464 Common - putative citrate-sodium symporter PBPRA2296 30 COG3493 CitS, Na+/citrate symporter Energy production and conversion 54308832 Common - hypothetical protein PBPRA1639 2 None None None 54309740 Common - aspartate-semialdehyde dehydrogenase PBPRA2579 196 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 54310478 Common - putative transposase PBPRA3412 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308337 Common - anaerobic nitric oxide reductase flavorubredoxin PBPRA1144 125 COG0426 FpaA, Uncharacterized flavoproteins Energy production and conversion 161936280 Common rplJ 50S ribosomal protein L10 PBPRA3434 194 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 54310550 Common - coproporphyrinogen III oxidase PBPRA3497 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 54308800 Common - hypothetical protein PBPRA1607 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309164 Common - hypothetical Lysophospholipase PBPRA1979 10 COG2267 PldB, Lysophospholipase Lipid metabolism 54310568 Common - putative signal peptide protein PBPRA3515 27 COG5572 COG5572, Predicted integral membrane protein Function unknown 54309934 Common - hypothetical protein PBPRA2780 10 COG3896 COG3896, Chloramphenicol 3-O-phosphotransferase Defense mechanisms 54308043 Common - hypothetical outer membrane lipoprotein PBPRA0848 4 None None None 54308868 Common - Hypothetical transport protein PBPRA1679 63 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 54308900 Nonpathogen - hypothetical protein PBPRA1711 1 None None None 54307808 Common rrmJ 23S rRNA methyltransferase J PBPRA0603 139 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 54309430 Common - hypothetical protein PBPRA2262 46 COG3195 COG3195, Uncharacterized protein conserved in bacteria Function unknown 54307589 Nonpathogen - hypothetical protein PBPRA0375 1 None None None 54309989 Common - putative serine transporter PBPRA2840 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 54309233 Nonpathogen - hypothetical protein PBPRA2049 1 None None None 54308823 Common - hypothetical transposase PBPRA1630 69 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 54309398 Common - hypothetical L-lactate permease (lctP) PBPRA2223 103 COG1620 LldP, L-lactate permease Energy production and conversion 54309503 Common - hypothetical Na+/H+-dicarboxylate symporter PBPRA2336 106 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 54310342 Common - putative ABC transporter, ATP-binding protein PBPRA3254 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 54308013 Common - Hypothetical lipoprotein PBPRA0818 7 COG3056 COG3056, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 54310451 Common - hypothetical Methyl-accepting chemotaxis protein PBPRA3384 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54308170 Nonpathogen - hypothetical protein PBPRA0977 1 None None None 54307999 Common - hypothetical protein PBPRA0804 2 None None None 54308732 Common - putative ATP-dependent helicase PBPRA1539 148 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 54309682 Common - hypothetical protein PBPRA2518 98 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 54308082 Common - Hypothetical resolvase PBPRA0888 140 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 54307653 Common - putative general secretion pathway protein A PBPRA0440 73 COG3267 ExeA, Type II secretory pathway, component ExeA (predicted ATPase) Intracellular trafficking and secretion 54309953 Common - phosphate acetyltransferase PBPRA2799 171 COG0280 Pta, Phosphotransacetylase Energy production and conversion 54308078 Common - hypothetical protein PBPRA0884 51 COG1479 COG1479, Uncharacterized conserved protein Function unknown 54310235 Common - glutathione synthetase PBPRA3138 127 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 54308267 Common - hypothetical hydrolase/acyltransferase PBPRA1074 137 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 54309536 Common - hypothetical transposase and inactivated derivatives PBPRA2369 91 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 54308870 Common - hypothetical spore germination protein PBPRA1681 2 None None None 54309290 Common - hypothetical protein PBPRA2110 28 COG3070 TfoX, Regulator of competence-specific genes Transcription 54307657 Common - putative phosphate transport regulator PBPRA0444 38 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 54308707 Common - hypothetical protein PBPRA1514 6 None None None 54309003 Nonpathogen - hypothetical protein PBPRA1816 3 None None None 54309096 Common - putative chemotaxis protein CheV PBPRA1910 147 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 54307879 Common - hypothetical protein PBPRA0676 39 COG4104 COG4104, Uncharacterized conserved protein Function unknown 54309863 Common - Putative glycerol-3-phosphate cytidyltransferase PBPRA2703 120 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 54308433 Common - putative thiosulfate sulfur transferase PBPRA1240 102 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 54309791 Common - hypothetical protein PBPRA2630 27 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 54309446 Nonpathogen - hypothetical protein PBPRA2278 1 None None None 54307334 Common - putative multidrug resistance protein PBPRA0113 164 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 54307712 Common - hypothetical protein PBPRA0500 19 COG1609 PurR, Transcriptional regulators Transcription 54308199 Nonpathogen - hypothetical protein PBPRA1006 1 None None None 54307970 Nonpathogen - hypothetical protein PBPRA0775 1 None None None 54310161 Common - pyruvate carboxylase subunit B PBPRA3051 202 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 54307614 Common apaH diadenosine tetraphosphatase PBPRA0400 85 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 54307373 Common - hypothetical protein PBPRA0152 210 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 54308421 Common helD DNA helicase IV PBPRA1228 231 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 54310485 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PBPRA3419 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 54308650 Common - omega-3 polyunsaturated fatty acid synthase PfaD PBPRA1457 22 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 54309223 Common - hypothetical ABC transporter ATP-binding protein PBPRA2038 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 54307695 Common - hypothetical membrane protein PBPRA0482 26 COG3205 COG3205, Predicted membrane protein Function unknown 54309243 Common - transcriptional regulator PBPRA2059 151 COG1846 MarR, Transcriptional regulators Transcription 54308313 Common - hypothetical phosphorelay protein PBPRA1120 3 None None None 54310280 Common - hypothetical protein PBPRA3192 121 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 54307623 Common - ATP-dependent helicase HepA PBPRA0409 134 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 54308564 Common - anaerobic glycerol-3-phosphate dehydrogenase subunit B PBPRA1371 32 COG3075 GlpB, Anaerobic glycerol-3-phosphate dehydrogenase Amino acid transport and metabolism 54310549 Common - adenosine deaminase PBPRA3496 112 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 54308688 Common - putative trimethylamine-N-oxide reductase 1 precursor PBPRA1495 162 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 54307560 Common rplO 50S ribosomal protein L15 PBPRA0339 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 54307551 Common rplN 50S ribosomal protein L14 PBPRA0330 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 54309044 Nonpathogen - hypothetical protein PBPRA1858 1 None None None 54308525 Common - hypothetical protein PBPRA1332 18 COG4333 COG4333, Uncharacterized protein conserved in bacteria Function unknown 54309067 Common - hypothetical protein PBPRA1881 3 None None None 54308447 Common - putative methyl-accepting chemotaxis protein PBPRA1254 152 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54307423 Common radC DNA repair protein RadC PBPRA0202 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 54307783 Common - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain PBPRA0578 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 54307319 Common - putative cytochrome c5 PBPRA0092 47 COG3245 CycB, Cytochrome c5 Energy production and conversion 54309559 Common - putative transcription-repair coupling factor PBPRA2392 230 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 54307503 Common - hypothetical DamX-related protein PBPRA0282 15 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 54307595 Common - hypothetical protein PBPRA0381 23 COG2105 COG2105, Uncharacterized conserved protein Function unknown 54308166 Common - putative acyl-CoA thioesterase II PBPRA0973 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 54308694 Common - hypothetical protein PBPRA1501 2 None None None 161936314 Common mgsA methylglyoxal synthase PBPRA1230 87 COG1803 MgsA, Methylglyoxal synthase Carbohydrate transport and metabolism 54307815 Common infB translation initiation factor IF-2 PBPRA0612 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 54307701 Common - hypothetical protein PBPRA0488 27 None None None 54307558 Common - putative ribosomal subunit protein S5 PBPRA0337 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 54307906 Common - hypothetical type IV pilin PBPRA0703 2 COG4967 PilV, Tfp pilus assembly protein PilV Cell motility and secretion / Intracellular trafficking and secretion 54310317 Common - putative phosphoheptose isomerase PBPRA3229 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 54309062 Common - hypothetical ribonuclease HI PBPRA1876 179 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 54307581 Common - putative transposase and inactivated derivative PBPRA0367 22 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310533 Common - putative general secretion pathway protein E PBPRA3480 217 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 54308342 Common - isocitrate dehydrogenase PBPRA1149 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 54308094 Common flgB flagellar basal body rod protein FlgB PBPRA0901 82 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 54308554 Common - hypothetical homoserine/homoserine lactone efflux protein PBPRA1361 128 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 54308887 Common - hypothetical integrase-recombinase PBPRA1698 221 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 54309424 Common - hypothetical maltose operon periplasmic protein PBPRA2256 17 None None None 54309138 Common - hypothetical protein PBPRA1952 35 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 54309956 Nonpathogen - hypothetical protein PBPRA2802 1 None None None 54308993 Common - hypothetical protein PBPRA1806 7 None None None 54310621 Common - Putative potassium uptake protein TrkH PBPRA3583 156 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 54307390 Common - cytochrome C oxidase assembly protein PBPRA0169 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 54307384 Common ubiA 4-hydroxybenzoate octaprenyltransferase PBPRA0163 164 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 54307746 Common gltD glutamate synthase subunit beta PBPRA0541 193 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 54309720 Common - peptidase E PBPRA2559 25 COG3340 PepE, Peptidase E Amino acid transport and metabolism 54307288 Common - hypothetical protein PBPRA0051 4 None None None 54310307 Common - hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase PBPRA3219 207 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 54309499 Common - putative transcriptional regulator, ROK family PBPRA2332 171 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 54307710 Common - hypothetical protein PBPRA0498 31 COG3394 COG3394, Uncharacterized protein conserved in bacteria Function unknown 54308015 Common - putative cell division protein BolA PBPRA0820 108 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 54307972 Common - hypothetical chemotaxis protein methyltransferase PBPRA0777 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 54309602 Common - hypothetical phage shock protein C PBPRA2437 32 COG1983 PspC, Putative stress-responsive transcriptional regulator Transcription / Signal transduction mechanisms 54308652 Common - omega-3 polyunsaturated fatty acid synthase PfaB PBPRA1459 21 COG3321 COG3321, Polyketide synthase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 54308417 Common - trehalose(maltose)-specific PTS system components IIBC PBPRA1224 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 54309332 Common - vtamin B12-transporter permease PBPRA2152 188 COG4139 BtuC, ABC-type cobalamin transport system, permease component Coenzyme metabolism 54307491 Common - hypothetical protein PBPRA0270 2 None None None 54307867 Common - hypothetical serine/threonine protein phosphatase PBPRA0664 134 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 54309927 Common - hypothetical protein PBPRA2773 11 None None None 54310228 Common pgk phosphoglycerate kinase PBPRA3131 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 54309630 Common - hypothetical protein PBPRA2466 12 None None None 54307844 Common - hypothetical soluble lytic murein transglycosylase PBPRA0641 163 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 54309926 Common - hypothetical transport system permease protein PBPRA2772 11 None None None 54307367 Common - hypothetical protein PBPRA0146 2 None None None 54308257 Common argS arginyl-tRNA synthetase PBPRA1064 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54308893 Common - putative transposase PBPRA1704 134 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 54310483 Common - hypothetical protein PBPRA3417 2 None None None 54309490 Common - putative sulfate permease PBPRA2323 95 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 54310444 Common - lysyl-tRNA synthetase PBPRA3377 224 COG2269 COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 54310295 Common - hypothetical mutator MutT protein PBPRA3207 150 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 54307443 Common - hypothetical protein PBPRA0222 61 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 54307636 Common - putative Cation/multidrug efflux pump PBPRA0422 179 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 54310312 Nonpathogen - hypothetical protein PBPRA3224 1 None None None 54309156 Common - hypothetical protein PBPRA1970 183 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 54308957 Common - hypothetical protein PBPRA1768 17 None None None 54309382 Common - hypothetical protein PBPRA2204 153 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 54307727 Common - putative peptide ABC transporter, ATP-binding protein PBPRA0522 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 54308100 Common flgH flagellar basal body L-ring protein PBPRA0907 98 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 54309627 Nonpathogen - hypothetical protein PBPRA2463 1 None None None 54308672 Common - hypothetical Na+/H+-dicarboxylate symporters PBPRA1479 155 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 54308186 Common - hypothetical amidinotransferase family protein PBPRA0993 21 COG1834 COG1834, N-Dimethylarginine dimethylaminohydrolase Amino acid transport and metabolism 54307731 Common - hypothetical sensory box sensor histidine kinase/response regulator PBPRA0526 226 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54309565 Common - hypothetical protein PBPRA2399 19 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 54309903 Common - hypothetical integral membrane protein PBPRA2749 9 None None None 54310094 Common - hypothetical protein PBPRA2978 4 None None None 54309842 Nonpathogen - hypothetical protein PBPRA2682 2 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 54307912 Common - putative protease PBPRA0717 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 54310600 Common - hypothetical transposase PBPRA3548 24 None None None 54309105 Common - hypothetical protein PBPRA1919 5 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 54309529 Common - hypothetical protein PBPRA2362 63 COG2346 COG2346, Truncated hemoglobins General function prediction only 54307431 Common - 3-deoxy-D-manno-octulosonic-acid kinase PBPRA0210 20 COG0478 COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain Signal transduction mechanisms 54308542 Common - hypothetical protein PBPRA1349 17 COG1475 Spo0J, Predicted transcriptional regulators Transcription 54310246 Common - coproporphyrinogen III oxidase PBPRA3149 206 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 54310027 Common - hypothetical Zn-dependent protease PBPRA2902 126 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 54309121 Common - hypothetical transposase PBPRA1935 21 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 161936340 Common - tRNA guanosine-2'-O-methyltransferase PBPRA0188 207 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 54309834 Common - putative UTP-glucose-1-phosphateuridylyltransferase, galU PBPRA2674 230 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 54309667 Common - hypothetical protein PBPRA2503 7 None None None 54308635 Common - glucose-6-phosphate 1-dehydrogenase PBPRA1442 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 54308284 Common hisD histidinol dehydrogenase PBPRA1091 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 54308618 Common - putative Uroporphyrinogen-III methylase PBPRA1425 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 54309162 Nonpathogen - hypothetical protein PBPRA1977 1 None None None 54308726 Common - Hypothetical Fe-S protein PBPRA1533 25 COG3313 COG3313, Predicted Fe-S protein General function prediction only 54307294 Common - Putative OmpA family protein PBPRA0057 145 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54308465 Common - Putative N-acyl-D-aspartate/D-glutamate deacylase PBPRA1272 60 COG3653 COG3653, N-acyl-D-aspartate/D-glutamate deacylase Secondary metabolites biosynthesis, transport, and catabolism 54307281 Nonpathogen - hypothetical protein PBPRA0044 1 None None None 54307342 Common - hypothetical protein PBPRA0121 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 54308053 Common - hypothetical protein PBPRA0858 13 None None None 54310186 Common era GTP-binding protein Era PBPRA3088 239 COG1159 Era, GTPase General function prediction only 54307349 Common - hypothetical protein PBPRA0128 222 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 54310594 Common - putative thioredoxin PBPRA3541 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 54307475 Common - ATP-dependent protease peptidase subunit PBPRA0254 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 54307949 Common hscA chaperone protein HscA PBPRA0754 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 54309635 Common - hypothetical protein PBPRA2471 7 None None None 54309114 Nonpathogen - hypothetical protein PBPRA1928 1 None None None 54310052 Common - putative binding protein component ofABC transporter PBPRA2936 161 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 54308926 Common - putative ABC transporter, ATP-binding protein PBPRA1737 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 54308528 Common - putative transposase, IS91 family PBPRA1335 31 None None None 54309142 Common - hypothetical protein PBPRA1956 11 None None None 54308522 Nonpathogen - hypothetical protein PBPRA1329 1 None None None 54308057 Common - phosphoenolpyruvate-protein phosphotransferase PBPRA0862 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 54310039 Common - putative sulfate transporter YchM PBPRA2914 158 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 54308243 Common sucC succinyl-CoA synthetase subunit beta PBPRA1050 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 54308734 Common - hypothetical repressor protein PBPRA1541 31 None None None 54309516 Common - hypothetical glyoxylase II family protein PBPRA2349 219 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 54307566 Common - DNA-directed RNA polymerase subunit alpha PBPRA0345 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 54307437 Common - putative capsular polysaccharide biosynthesis protein PBPRA0216 154 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54308973 Common - hypothetical transposase PBPRA1784 6 None None None 54309570 Common - hypothetical methyl-accepting chemotaxis protein PBPRA2404 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 54307268 Common - Hypothetical FlgC flagellar basal-body rod protein PBPRA0031 126 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 54307507 Common - tryptophanyl-tRNA synthetase PBPRA0286 234 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 54309197 Common - putative NupC, nucleoside permease PBPRA2012 68 COG1972 NupC, Nucleoside permease Nucleotide transport and metabolism 54310599 Common - hypothetical protein PBPRA3547 20 COG3314 COG3314, Uncharacterized protein conserved in bacteria Function unknown 54309896 Common - putative ABC-type histidine transport system, ATPase component PBPRA2742 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 54309489 Common - heat shock protein HtpX PBPRA2322 191 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 54308796 Nonpathogen - hypothetical protein PBPRA1603 1 None None None 54307735 Common - chloride channel protein PBPRA0530 156 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 54310043 Common - putative ribonuclease HI PBPRA2918 176 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 54308560 Common - putative transcriptional regulator, LysR family PBPRA1367 193 COG0583 LysR, Transcriptional regulator Transcription 54307239 Common trmE tRNA modification GTPase TrmE PBPRA0002 226 COG0486 ThdF, Predicted GTPase General function prediction only 54307510 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein PBPRA0289 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 54309804 Common - putative dipeptide/Tripeptide permease PBPRA2644 89 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 54307399 Common - hypothetical ComF-related protein PBPRA0178 169 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 54310114 Common - putative exodeoxyribonuclease V PBPRA2998 217 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 54309739 Common - putative superoxide dismutase PBPRA2578 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 54309202 Common - hypothetical protein PBPRA2017 7 None None None 54310329 Common - putative DegS serine protease PBPRA3241 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 54309522 Common - hypothetical transcriptional regulator LYSR-type PBPRA2355 148 COG0583 LysR, Transcriptional regulator Transcription 54310551 Common - hypothetical protein PBPRA3498 12 None None None 54308684 Nonpathogen - hypothetical protein PBPRA1491 2 None None None 54309313 Nonpathogen - hypothetical protein PBPRA2133 1 None None None 54310474 Common panF sodium/panthothenate symporter PBPRA3408 185 COG4145 PanF, Na+/panthothenate symporter Coenzyme metabolism 54308133 Common - putative chemotaxis protein CheY PBPRA0940 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 54309815 Common - putative aspartate-semialdehyde dehydrogenase PBPRA2655 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 54307950 Common - putative ferredoxin PBPRA0755 77 COG0633 Fdx, Ferredoxin Energy production and conversion 54308808 Nonpathogen - hypothetical protein PBPRA1615 1 None None None 54308519 Nonpathogen - hypothetical protein PBPRA1326 1 None None None 54308028 Common - putative aminoacyl-histidine dipeptidase PBPRA0833 62 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 54309677 Common cls cardiolipin synthetase PBPRA2513 153 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 54309915 Common - hypothetical transcriptional regulator PBPRA2761 184 COG0583 LysR, Transcriptional regulator Transcription 54307762 Common - endonuclease IV PBPRA0557 101 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 54308105 Common - flagellin PBPRA0912 123 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 54307964 Nonpathogen - hypothetical protein PBPRA0769 1 None None None 54308592 Common - hypothetical protein PBPRA1399 5 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 54308779 Nonpathogen - hypothetical protein PBPRA1586 1 None None None 54309213 Common - Putative cytochrome c-type protein NapC PBPRA2028 44 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 54308984 Common - hypothetical protein PBPRA1797 18 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 54309752 Common - tRNA 2-selenouridine synthase PBPRA2591 65 COG2603 COG2603, Predicted ATPase General function prediction only 54310358 Common - putative MreB, Actin-like ATPase involved in cell morphogenesis PBPRA3270 235 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 54310076 Common - outer membrane protein assembly factor YaeT PBPRA2960 161 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 54308654 Common - hypothetical protein PBPRA1461 64 COG0824 FcbC, Predicted thioesterase General function prediction only 54307979 Common - putative alcohol dehydrogenase class III PBPRA0784 196 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 54309136 Common - hypothetical acetyltransferase PBPRA1950 5 COG3153 COG3153, Predicted acetyltransferase General function prediction only 54307277 Common - hypothetical protein PBPRA0040 8 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 54308375 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase PBPRA1182 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 54309547 Common - hypothetical protein PBPRA2380 81 COG1434 COG1434, Uncharacterized conserved protein Function unknown 54309453 Common - N-acetylmannosamine-6-phosphate 2-epimerase PBPRA2285 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 54308474 Common - hypothetical protein PBPRA1281 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 54308846 Common - putative transposase PBPRA1653 90 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 161936294 Common - hybrid sensory histidine kinase BarA PBPRA3084 224 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 54307403 Common - hypothetical protein PBPRA0182 173 COG2183 Tex, Transcriptional accessory protein Transcription 54307932 Common - malate synthase PBPRA0737 92 COG2225 AceB, Malate synthase Energy production and conversion 54310330 Common - UDP-N-acetylglucosamine 1-carboxyvinyltransferase PBPRA3242 211 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 54307357 Common - hypothetical protein PBPRA0136 114 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 54309662 Common - hypothetical protein PBPRA2498 116 COG4963 CpaE, Flp pilus assembly protein, ATPase CpaE Intracellular trafficking and secretion 54307256 Common - hypothetical protein PBPRA0019 109 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 54308358 Common - seryl-tRNA synthetase PBPRA1165 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 54310290 Common - putative Type IV pilin biogenesis protein PBPRA3202 143 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 54308936 Common - N-acetyl-D-glucosamine kinase PBPRA1747 133 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 54308365 Common - Hypothetical AsmA protein PBPRA1172 62 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 54310175 Common - putative 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase PBPRA3077 195 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 54307242 Common - Putative amino acid ABC transporter, ATP-binding protein PBPRA0005 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 54309279 Nonpathogen - hypothetical protein PBPRA2099 1 None None None 54310135 Common tyrA bifunctional chorismate mutase/prephenate dehydrogenase PBPRA3025 91 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 54307577 Common - hypothetical glycosyltransferas PBPRA0356 52 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 54308393 Common - putative thymidylate kinase PBPRA1200 226 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 54308400 Common - hypothetical protein PBPRA1207 18 COG3070 TfoX, Regulator of competence-specific genes Transcription 54310016 Common - putative rod shape-determining protein RodA PBPRA2891 208 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 54309293 Common - hypothetical protein PBPRA2113 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 54308712 Common - Hypothetical GTP cyclohydrolase II PBPRA1519 171 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 54308211 Common - hypothetical protein PBPRA1018 93 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 54308500 Nonpathogen - hypothetical protein PBPRA1307 1 None None None 54308508 Nonpathogen - hypothetical protein PBPRA1315 1 None None None 54307517 Common - hypothetical protein PBPRA0296 30 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 54309448 Common - putative TRAP-type C4-dicarboxylate transport system, small permease component PBPRA2280 48 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 54308770 Common - putative arginine/ornithine antiporter PBPRA1577 134 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 54310097 Common - SecY interacting protein Syd PBPRA2981 20 None None None 54310413 Nonpathogen - hypothetical protein PBPRA3333 1 None None None 54308023 Common - Na(+)-translocating NADH-quinone reductase subunit F PBPRA0828 154 COG2871 NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF Energy production and conversion 54310375 Common - regulatory protein CsrD PBPRA3287 162 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 54308138 Common - hypothetical protein PBPRA0945 14 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 54307942 Common - putative inositol monophosphate family protein PBPRA0747 208 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 54307715 Common - Hypothetical transposase PBPRA0510 98 None None None 54308505 Nonpathogen - hypothetical protein PBPRA1312 1 None None None 54310508 Common - putative UDP-N-acetylpyruvoylglucosamine reductase PBPRA3446 206 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 54310368 Common - putative MSHA biogenesis protein MshE PBPRA3280 221 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 54307388 Common - putative cytochrome c oxidase, subunit II PBPRA0167 149 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 54309707 Common - hypothetical Na+-dependent transporter PBPRA2546 67 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 54309943 Common - hypothetical protein PBPRA2789 13 COG3110 COG3110, Uncharacterized protein conserved in bacteria Function unknown 54309462 Nonpathogen - hypothetical protein PBPRA2294 1 None None None 54308007 Common - 2-dehydropantoate 2-reductase PBPRA0812 109 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 54310647 Common - F0F1 ATP synthase subunit C PBPRA3609 116 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 54310631 Common - acetolactate synthase 2 catalytic subunit PBPRA3593 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 54307803 Common - hypothetical protein PBPRA0598 147 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 54307864 Common - hypothetical protein PBPRA0661 135 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 54309021 Common - hypothetical protein PBPRA1835 22 COG3198 COG3198, Uncharacterized protein conserved in bacteria Function unknown 54309839 Nonpathogen - Predicted membrane protein PBPRA2679 1 None None None 54310105 Common - hypothetical protein PBPRA2989 36 COG3571 COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 54310643 Common - F0F1 ATP synthase subunit gamma PBPRA3605 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 54307917 Common phoR phosphate regulon sensor protein PBPRA0722 222 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 54308206 Common - hypothetical protein PBPRA1013 19 COG3110 COG3110, Uncharacterized protein conserved in bacteria Function unknown 161936300 Common trpD anthranilate phosphoribosyltransferase PBPRA2488 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 54309888 Common - hypothetical ISSod3, transposase PBPRA2734 16 None None None 54308271 Common - putative septum site-determining protein MinD PBPRA1078 140 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning