Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome NC_005364 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 42561499 Common oppF Oligopeptide ABC transporter, ATP-binding component MSC_0983 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 42560907 Common tnp IS1634AE transposase MSC_0363 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560900 Common cdsA Phosphatidate cytidylyltransferase MSC_0356 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 42561137 Common rpsB 30S ribosomal protein S2 MSC_0608 216 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 42561054 Pathogen lppB Prolipoprotein B MSC_0519 1 None None None 42561503 Common epsG Glycosyltransferase MSC_0987 38 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42561517 Common tnp IS1634BG transposase MSC_1003 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561536 Pathogen - hypothetical protein MSC_1023 1 None None None 42560784 Common pepA leucyl aminopeptidase MSC_0235 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 161723280 Common rpsT 30S ribosomal protein S20 MSC_0086 138 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 42561229 Common arcB putrescine carbamoyltransferase MSC_0703 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 42561279 Pathogen - hypothetical protein MSC_0754 1 None None None 42561423 Common tnpA IS1296DS transposase protein A MSC_0905 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560654 Common - hypothetical protein MSC_0095 2 None None None 42560953 Common - Conserved putative prolipoprotein MSC_0418 15 None None None 42561389 Pathogen - hypothetical protein MSC_0870 1 None None None 42561412 Common glyA glycine hydroxymethyltransferase MSC_0894 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 42560647 Pathogen - hypothetical protein MSC_0088 1 None None None 42560613 Common - AhpC/TSA family protein MSC_0053 199 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 42560958 Common ffh Signal recognition particle M54 protein MSC_0423 246 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 42561221 Pathogen - hypothetical protein MSC_0695 1 None None None 42561329 Common patB aminotransferase (PLP-dependent) MSC_0806 207 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 42561357 Common pnp Purine nucleoside phosphorylase MSC_0835 80 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 42560695 Common - hypothetical protein MSC_0143 8 None None None 42560562 Common dnaN DNA POLYMERASE III, BETA CHAIN MSC_0002 214 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 42560755 Common - hypothetical protein MSC_0203 15 None None None 42560949 Common - DNA-binding protein HU (HB) MSC_0410 190 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 42561543 Pathogen - hypothetical protein MSC_1030 1 None None None 42560750 Pathogen - hypothetical protein MSC_0198 1 None None None 42560874 Common proS prolyl-tRNA synthetase MSC_0327 162 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561459 Common uvrA excinuclease ABC subunit A MSC_0943 239 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 42560816 Common pdhD dihydrolipoamide dehydrogenase MSC_0268 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 42560685 Common gltX glutamate-tRNA ligase MSC_0131 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42561073 Pathogen lpp Prolipoprotein MSC_0540 1 None None None 42561028 Common cut COPPER HOMEOSTASIS PROTEIN MSC_0493 58 COG3142 CutC, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 42560844 Common greA transcription elongation factor MSC_0296 202 COG0782 GreA, Transcription elongation factor Transcription 42561211 Common tnp IS1634BL transposase MSC_0685 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561483 Common oppD Oligopeptide ABC transporter, ATP-binding component MSC_0967 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 42561560 Pathogen - hypothetical protein MSC_1049 1 None None None 42560983 Common - hypothetical protein MSC_0448 2 COG1614 CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit Energy production and conversion 42561167 Common - hypothetical protein MSC_0639 4 None None None 42561567 Common tnp Transposase ISMmy1I MSC_1056 6 None None None 42561179 Pathogen - hypothetical protein MSC_0651 1 None None None 42560742 Common - hypothetical protein MSC_0190 6 None None None 42561550 Pathogen - hypothetical protein MSC_1039 1 None None None 42561092 Common nal N-acetylneuraminate lyase MSC_0559 234 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 42561238 Common rpsI 30S ribosomal protein S9 MSC_0712 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 42561331 Common tnp TRANSPOSASE ISMmy1C MSC_0808 5 None None None 42561250 Common adk ADENYLATE KINASE MSC_0725 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 42560848 Common - hypothetical protein MSC_0300 148 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 42561116 Common - hypothetical protein MSC_0586 36 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42560779 Pathogen chrA Chromate transport protein MSC_0229 1 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 42561525 Pathogen - hypothetical protein MSC_1012 1 None None None 42560923 Common - hypothetical protein MSC_0383 2 COG1480 COG1480, Predicted membrane-associated HD superfamily hydrolase General function prediction only 42561257 Common rplE 50S ribosomal protein L5 MSC_0732 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 42560574 Pathogen p72 IMMUNODOMINANT PROTEIN P72 PRECURSOR MSC_0014 1 None None None 42561172 Common fbaA1 Fructose-bisphosphate aldolase class-II MSC_0644 177 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 42560960 Common rpsP 30S ribosomal protein S16 MSC_0425 213 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 42561021 Common pstCA phosphate ABC transport system, permease component MSC_0486 226 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 42561011 Common - P115-like protein with SMC_C motif MSC_0476 198 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42560737 Common - Restriction endonuclease MSC_0185 4 None None None 42560864 Common - hypothetical protein MSC_0316 6 None None None 42561297 Common - hypothetical protein MSC_0772 15 None None None 42561044 Common gapN glyceraldehyde-3-phosphate dehydrogenase (NADP) MSC_0509 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 42561047 Common recD Exodeoxyribonuclease V alpha subunit MSC_0512 126 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 42561205 Common gap glyceraldehyde-3-phosphate dehydrogenase MSC_0679 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 42561453 Common - hypothetical protein MSC_0937 2 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 42560778 Common - hypothetical protein MSC_0228 30 COG4823 AbiF, Abortive infection bacteriophage resistance protein Defense mechanisms 42561285 Common - hypothetical protein MSC_0760 79 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 42561494 Common galE UDP-glucose 4-epimerase MSC_0978 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 42560723 Pathogen - hypothetical protein MSC_0171 1 None None None 42560780 Common tnp Transposase ISMmy1B MSC_0230 6 None None None 42561194 Pathogen - hypothetical protein MSC_0667 1 None None None 42560796 Common murQ N-acetylmuramic acid-6-phosphate etherase MSC_0248 83 COG2103 COG2103, Predicted sugar phosphate isomerase General function prediction only 42561107 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase MSC_0577 120 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 42561129 Common argS arginine-tRNA ligase MSC_0599 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561416 Common tnpA IS1296AC_R transposase protein A MSC_0898 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560931 Pathogen - hypothetical protein MSC_0391 1 None None None 42560941 Pathogen lpp Prolipoprotein MSC_0401 1 None None None 42561402 Common atpC ATP synthase epsilon chain MSC_0884 8 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 42561530 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA MSC_1017 192 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 42561433 Common - hypothetical protein MSC_0915 118 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 42561083 Common - hypothetical protein MSC_0550 7 COG4870 COG4870, Cysteine protease Posttranslational modification, protein turnover, chaperones 42560626 Common serS seryl-tRNA synthetase MSC_0066 248 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561216 Common - hypothetical protein MSC_0690 19 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 42561309 Pathogen - hypothetical protein MSC_0784 1 None None None 127763383 Common lepA GTP-binding protein LepA MSC_0330 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 42560999 Common glyS glycyl-tRNA synthetase MSC_0464 90 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 42561068 Pathogen - hypothetical protein MSC_0535 1 None None None 42561302 Pathogen - hypothetical protein MSC_0777 1 None None None 42561520 Common rplJ 50S ribosomal protein L10 MSC_1006 207 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 42561557 Common lppQ Prolipoprotein Q MSC_1046 16 None None None 42560876 Common - hypothetical protein MSC_0329 5 None None None 42560822 Common crr PTS SYSTEM, GLUCOSE-SPECIFIC IIA COMPONENT MSC_0274 60 COG2190 NagE, Phosphotransferase system IIA components Carbohydrate transport and metabolism 42561271 Common rpsJ 30S ribosomal protein S10 MSC_0746 246 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 42560909 Pathogen - hypothetical prolipoprotein MSC_0367 1 None None None 42561463 Common - Deoxyribonuclease, TatD related MSC_0947 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 42560933 Pathogen - hypothetical protein MSC_0393 1 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 42561124 Common - hypothetical protein MSC_0594 2 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 42560913 Common - hypothetical protein MSC_0371 6 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 42560793 Common tnp IS1634AC transposase MSC_0245 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561537 Pathogen - hypothetical protein MSC_1024 1 None None None 42561184 Common - hypothetical protein MSC_0656 69 None None None 42560827 Common - hypothetical protein MSC_0279 10 None None None 42560670 Pathogen - hypothetical protein MSC_0111 1 None None None 42560853 Common rpe ribulose-phosphate 3-epimerase MSC_0305 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 42561330 Common - translation initiation inhibitor MSC_0807 181 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 42561242 Common abc ABC transporter, permease component (vitamin B12?) MSC_0716 75 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 42560831 Pathogen - hypothetical protein MSC_0283 1 None None None 42561100 Pathogen lpp Prolipoprotein MSC_0570 1 None None None 42560609 Common codA CYTOSINE DEAMINASE MSC_0049 81 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 42561350 Common deoC deoxyribose-phosphate aldolase MSC_0828 138 COG0274 DeoC, Deoxyribose-phosphate aldolase Nucleotide transport and metabolism 42561348 Common - hypothetical protein MSC_0826 24 None None None 42560716 Pathogen - hypothetical protein MSC_0164 1 None None None 42561438 Common tnp IS1634CD transposase MSC_0921 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561450 Common tnp IS1634BY transposase MSC_0934 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560979 Common - Deoxynucleoside kinase MSC_0444 16 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 42560586 Common ssb Single-strand binding protein MSC_0026 148 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 42560705 Common - hypothetical protein MSC_0153 13 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 42561142 Common clpB ATP dependant protease ClpB MSC_0613 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 42560966 Common lpp Prolipoprotein MSC_0431 11 None None None 42561428 Common - Amino acid permease MSC_0910 6 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42560990 Common - recombination factor protein RarA MSC_0455 243 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 42561312 Common phnC alkylphosphonate ABC transporter, ATP-binding component MSC_0789 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 42560768 Common gmk Guanylate kinase MSC_0218 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 42561445 Pathogen - hypothetical protein MSC_0928 1 None None None 42560630 Common tnp IS1634BA transposase MSC_0070 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560564 Common ksgA dimethyladenosine transferase MSC_0004 247 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 42561511 Common rplA 50S ribosomal protein L1 MSC_0995 246 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 42561541 Pathogen - hypothetical protein MSC_1028 1 None None None 42560872 Common - hypothetical protein MSC_0325 2 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 42560803 Common - hypothetical protein MSC_0255 105 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 42561095 Common rplU 50S ribosomal protein L21 MSC_0562 211 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 42560565 Common - Hypothetical purine NTPase MSC_0005 2 None None None 42561327 Pathogen abc ABC TRANSPORTER, substrate-binding component MSC_0804 1 None None None 42560905 Common - hypothetical protein MSC_0361 116 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 42561200 Common tnpA IS1296QT transposase protein A MSC_0674 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561231 Pathogen - hypothetical protein MSC_0705 1 None None None 42561288 Common gatC Glutamyl-tRNA (Gln) amidotransferase, subunit C MSC_0763 9 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 42561213 Common pncB nicotinate phosphoribosyltransferase MSC_0687 95 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 42561421 Common uhpT Hexose phosphate transport protein MSC_0903 6 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 42560786 Common pepF Oligoendopeptidase F MSC_0237 85 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 42560774 Common potA spermidine/putrescine ABC transporter ATP-binding component MSC_0224 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 42561277 Pathogen - hypothetical protein MSC_0752 1 None None None 42560640 Common - putative hydrolase of the HAD family MSC_0081 94 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42560649 Common pepQ Proline dipeptidase MSC_0090 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 42561442 Pathogen - hypothetical protein MSC_0925 2 None None None 42561320 Common tnp IS1634AU transposase MSC_0797 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561488 Pathogen - hypothetical protein MSC_0972 1 None None None 42560921 Pathogen - hypothetical protein MSC_0379 2 None None None 42561053 Common gtsC Glycerol ABC transporter, permease component MSC_0518 49 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 42560618 Pathogen - hypothetical protein MSC_0058 1 None None None 42560731 Common - hypothetical protein MSC_0179 2 COG4956 COG4956, Integral membrane protein (PIN domain superfamily) General function prediction only 42561170 Common - hypothetical protein MSC_0642 4 None None None 42560951 Common recU Recombination protein U MSC_0416 17 COG3331 PrfA, Penicillin-binding protein-related factor A, putative recombinase General function prediction only 42561136 Common tsf elongation factor Ts MSC_0607 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 42561519 Common lpp Putative variable surface prolipoprotein MSC_1005 15 None None None 42560576 Common tnpA IS1296SQ transposase protein A MSC_0016 11 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560656 Common tnp IS1634BO transposase MSC_0097 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561383 Common arcC carbamate kinase MSC_0864 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 42561319 Common tnp TRANSPOSASE ISMmy1G MSC_0796 6 None None None 42561042 Common - hypothetical protein MSC_0507 7 COG4508 COG4508, Uncharacterized protein conserved in bacteria Function unknown 42561457 Common - hypothetical protein MSC_0941 6 COG4720 COG4720, Predicted membrane protein Function unknown 42560597 Common - hypothetical protein MSC_0037 6 None None None 42561071 Common tnp IS1634AB transposase MSC_0538 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560911 Pathogen - hypothetical protein MSC_0369 1 None None None 42561333 Common - Putative variable surface protein MSC_0810 15 None None None 42560846 Pathogen - hypothetical protein MSC_0298 1 COG4652 COG4652, Uncharacterized protein conserved in bacteria Function unknown 42560692 Common tnpA IS1296MP transposase protein A MSC_0138 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560639 Common asnC asparaginyl-tRNA synthetase MSC_0080 208 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 42561009 Common apt adenine phosphoribosyltransferase MSC_0474 190 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 42561002 Common - hypothetical protein MSC_0467 31 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 42560687 Common - hypothetical protein MSC_0133 2 COG3343 RpoE, DNA-directed RNA polymerase, delta subunit Transcription 42560833 Pathogen lpp Prolipoprotein MSC_0285 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42561565 Pathogen - hypothetical protein MSC_1054 1 None None None 42560744 Common fic Conserved hypothetical protein, Fic protein family MSC_0192 87 COG3177 COG3177, Uncharacterized conserved protein Function unknown 42560837 Common ctp cation-transporting ATPase MSC_0289 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42561161 Pathogen - Hypothetical prolipoprotein MSC_0632 1 None None None 42560894 Common - hypothetical protein MSC_0350 9 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 42561114 Common lsp Signal peptidase II MSC_0584 11 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 42561465 Common - hypothetical protein MSC_0949 3 None None None 42560981 Pathogen - hypothetical protein MSC_0446 1 None None None 42561435 Common - hypothetical protein MSC_0918 4 COG1288 COG1288, Predicted membrane protein Function unknown 42561559 Pathogen - hypothetical protein MSC_1048 1 None None None 42560817 Common pta phosphate acetyltransferase MSC_0269 157 COG0280 Pta, Phosphotransacetylase Energy production and conversion 42561303 Common - hypothetical protein MSC_0778 52 COG1479 COG1479, Uncharacterized conserved protein Function unknown 42560943 Common ppa inorganic pyrophosphatase MSC_0404 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 42560989 Common lon endopeptidase La MSC_0454 211 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 42560879 Common tnp IS1634AW transposase MSC_0332 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560782 Common - hypothetical protein MSC_0233 39 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 42561314 Pathogen - hypothetical protein MSC_0791 1 None None None 42560733 Common oppC Oligopeptide ABC transporter, permease component I MSC_0181 202 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42560964 Common - Conserved hypothetical GTP-binding protein MSC_0429 86 COG1161 COG1161, Predicted GTPases General function prediction only 42560725 Common tnpA IS1296UK transposase MSC_0173 12 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561201 Pathogen - hypothetical protein MSC_0675 1 None None None 42560772 Common rpmI 50S ribosomal protein L35 MSC_0222 94 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 42560866 Pathogen - hypothetical protein MSC_0318 1 None None None 42561410 Common - hypothetical protein MSC_0892 2 None None None 42561299 Common msrA PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSC_0774 206 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 42561061 Common - hypothetical protein MSC_0528 9 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 42561400 Common mgtA MG(2+) TRANSPORT ATPASE MSC_0881 179 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42561000 Common dnaG DNA primase MSC_0465 217 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 42561196 Pathogen - hypothetical protein MSC_0669 1 None None None 42560595 Common - MALATE PERMEASE MSC_0035 21 COG0679 COG0679, Predicted permeases General function prediction only 42561291 Common rluC RNA pseudouridylate synthase MSC_0766 163 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42561192 Pathogen - hypothetical protein MSC_0664 1 COG3654 Doc, Prophage maintenance system killer protein General function prediction only 42560996 Common - hypothetical protein MSC_0461 47 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 42561492 Common tnp IS1634BN transposase MSC_0976 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560766 Common dcm Cytosine-specific DNA-methyltransferase Sau96I MSC_0216 129 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 42561485 Common tnp IS1634BQ transposase MSC_0969 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561252 Common rplO 50S ribosomal protein L15 MSC_0727 216 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 42561355 Common fruR transcription repressor of fructose operon MSC_0833 108 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 42560703 Common hemK protoporphyrinogen oxidase MSC_0151 206 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 42561223 Common tnp IS1634BM transposase MSC_0697 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561085 Common udk uridine kinase MSC_0552 87 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 42561007 Common - hypothetical protein MSC_0472 3 None None None 42561322 Pathogen - hypothetical protein MSC_0799 1 None None None 42560957 Common - hypothetical protein MSC_0422 76 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 42561038 Common - 5-formyltetrahydrofolate cyclo-ligase MSC_0503 119 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 42561497 Common tnp IS1634AV transposase MSC_0981 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560584 Common - hypothetical protein MSC_0024 15 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 42560761 Common - Conserved hypothetical prolipoprotein MSC_0209 16 None None None 42561122 Common - hypothetical protein MSC_0592 94 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 42561244 Common abc ABC transporter, ATP-binding component (vitamin B12?) MSC_0718 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 42560798 Common pts PTS system, sucrose-specific IIC component (trunca MSC_0250 39 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561364 Common tnpB IS1296HV transposase protein B MSC_0844 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561470 Common pth peptidyl-tRNA hydrolase MSC_0954 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 42561263 Common rplP 50S ribosomal protein L16 MSC_0738 217 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 42561031 Common ung uracil-DNA glycosylase MSC_0496 128 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 42561158 Common tnpB IS1296LL transposase protein B MSC_0629 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560628 Common - Transcriptional regulator (involved in nitrogen regulation; NifR3 family MSC_0068 205 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 42560672 Common abc ABC transporter, ATP-binding protein MSC_0113 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 42561564 Pathogen - hypothetical protein MSC_1053 1 None None None 42560616 Common tnpA IS1296IE transposase protein A MSC_0056 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560870 Common abc ABC transporter, ATP-binding component (Na+?) MSC_0323 248 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42560674 Pathogen - hypothetical protein MSC_0115 1 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 42561259 Common rplX 50S ribosomal protein L24 MSC_0734 200 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 42560607 Common recR DNA REPAIR PROTEIN RecR MSC_0047 176 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 42561112 Common - hypothetical protein MSC_0582 2 None None None 42561477 Common - hypothetical protein MSC_0961 2 None None None 42560829 Common - hypothetical protein MSC_0281 37 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42560746 Common - Putative prophage protein (ps3) MSC_0194 21 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 42561561 Pathogen - hypothetical protein MSC_1050 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42561479 Common - hypothetical protein MSC_0963 31 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 42560577 Common mtlD MANNITOL-1-PHOSPHATE 5-DEHYDROGENASE MSC_0017 33 COG0246 MtlD, Mannitol-1-phosphate/altronate dehydrogenases Carbohydrate transport and metabolism 42561337 Common - putative variable surface protein MSC_0815 13 None None None 42561160 Pathogen - hypothetical protein MSC_0631 2 None None None 42561468 Common prs ribose-phosphate pyrophosphokinase MSC_0952 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 42560918 Pathogen - hypothetical protein MSC_0376 1 None None None 42560615 Common tnpB IS1296IE transposase protein B MSC_0055 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561024 Common ftsY Cell division protein FtsY MSC_0489 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 42560896 Common nusA transcription elongation factor NusA MSC_0352 216 COG0195 NusA, Transcription elongation factor Transcription 42561396 Common arcC carbamate kinase MSC_0877 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 42560987 Common - hypothetical protein MSC_0452 2 None None None 42561051 Common gtsA Glycerol ABC transporter, ATP-binding component MSC_0516 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 42561132 Common tnp IS1634CA transposase MSC_0602 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560594 Common ldh D-lactate dehydrogenase MSC_0034 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 42560886 Common tnp IS1634BR transposase MSC_0342 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560927 Common rluB Ribosomal large subunit pseudouridine synthase B MSC_0387 192 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 42560632 Common - Putative hydrolase of the HAD family MSC_0073 82 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42560741 Pathogen - hypothetical protein MSC_0189 1 None None None 42560600 Pathogen - hypothetical protein MSC_0040 1 None None None 42560686 Common - Conserved hypothetical protein with HD domain MSC_0132 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 42561016 Common - PREDICTED KINASE RELATED TO HYDROXYACETONE KINASE MSC_0481 50 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 42561370 Common purA adenylosuccinate synthase MSC_0850 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 42561150 Pathogen - hypothetical protein MSC_0621 2 None None None 42561385 Common - hypothetical protein MSC_0866 2 COG1288 COG1288, Predicted membrane protein Function unknown 42561371 Common tnpA IS1296GZ transposase protein A MSC_0851 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560738 Common - DNA methylase MSC_0186 145 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 42560805 Common glpF glycerol uptake facilitator MSC_0257 100 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 42561202 Common - hypothetical protein MSC_0676 14 None None None 42560570 Common rbsA Ribose/Galactose ABC transporter, ATP-binding component MSC_0010 249 COG3845 COG3845, ABC-type uncharacterized transport systems, ATPase components General function prediction only 42561176 Common - hypothetical protein MSC_0648 6 None None None 42561008 Common - hypothetical protein MSC_0473 2 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 42561027 Common metK S-adenosylmethionine synthetase MSC_0492 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 42560712 Common tufA elongation factor Tu MSC_0160 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 42560662 Pathogen - hypothetical protein MSC_0103 1 None None None 42560904 Pathogen - hypothetical protein MSC_0360 1 None None None 42560788 Common tnpB IS1296FJ transposase protein B MSC_0239 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560701 Common tdk thymidine kinase MSC_0149 71 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 42561506 Common galU UTP-glucose-1-phosphate uridylyltransferase MSC_0990 233 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 42561380 Common - hypothetical protein MSC_0861 53 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42561286 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B MSC_0761 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 42560696 Pathogen - hypothetical protein MSC_0144 1 None None None 42560975 Common nadE NH(3)-dependent NAD(+) synthetase MSC_0440 194 COG0171 NadE, NAD synthase Coenzyme metabolism 42560582 Pathogen - hypothetical protein MSC_0022 1 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 42561418 Common - hypothetical protein MSC_0900 14 None None None 42561440 Pathogen - hypothetical protein MSC_0923 2 None None None 42560667 Common epsG Glycosyltransferase MSC_0108 56 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42560770 Common pdf Peptide deformylase MSC_0220 120 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 42561126 Common pheS Phenylalanine-tRNA ligase alpha subunit MSC_0596 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 42560800 Pathogen - hypothetical protein MSC_0252 1 None None None 42560965 Common rnhB ribonuclease H II MSC_0430 233 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 42561225 Common tnp IS1138 transposase MSC_0699 119 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560643 Common - hypothetical protein MSC_0084 8 None None None 42561262 Common rpmC 50S ribosomal protein L29 MSC_0737 2 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 42561427 Common - hypothetical protein MSC_0909 2 None None None 42560781 Common tnpA IS1296PX transposase protein A MSC_0232 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561183 Pathogen - hypothetical protein MSC_0655 1 None None None 42561546 Pathogen - hypothetical protein MSC_1034 1 None None None 42560651 Common - hypothetical protein MSC_0092 2 None None None 42560929 Common - hypothetical protein MSC_0389 2 None None None 42561449 Common - hypothetical protein MSC_0933 7 None None None 42561218 Common - hypothetical protein MSC_0692 2 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 42560699 Common - hypothetical protein MSC_0147 2 None None None 42561317 Common patB aminotransferase (PLP-dependent) MSC_0794 223 COG1168 MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities Amino acid transport and metabolism 42561269 Common rplD 50S ribosomal protein L4 MSC_0744 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 42561156 Pathogen lpp Prolipoprotein MSC_0627 2 None None None 42560567 Common gyrA DNA Gyrase Subunit A MSC_0007 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 42561325 Common tnp IS1634AY transposase MSC_0802 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560680 Common tnp transposase ISMmy1E MSC_0123 6 None None None 42560690 Common - hypothetical protein MSC_0136 14 None None None 42560658 Common hlyA hemolysin A MSC_0099 131 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 42561352 Common deoA thymidine phosphorylase MSC_0830 120 COG0213 DeoA, Thymidine phosphorylase Nucleotide transport and metabolism 42561267 Common rplB 50S ribosomal protein L2 MSC_0742 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 42560623 Common - hypothetical protein MSC_0063 2 COG4720 COG4720, Predicted membrane protein Function unknown 42560605 Common holB DNA polymerase III delta subunit MSC_0045 65 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 42561128 Common - hypothetical protein MSC_0598 4 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 42561086 Pathogen - hypothetical protein MSC_0553 1 None None None 42560799 Common gntR Transcription regulator gntR MSC_0251 34 COG1737 RpiR, Transcriptional regulators Transcription 42560676 Pathogen lpp putative variable prolipoprotein MSC_0117 1 None None None 42560823 Pathogen - hypothetical protein MSC_0275 1 None None None 42560593 Common - Predicted permease MSC_0033 7 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42561354 Common fruB 1-PHOSPHOFRUCTOKINASE MSC_0832 83 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 42561188 Pathogen - hypothetical protein MSC_0660 1 None None None 42561334 Common - putative variable surface protein MSC_0812 13 None None None 42560751 Pathogen - hypothetical protein MSC_0199 1 None None None 42561472 Common dnaC replicative DNA helicase DnaC MSC_0956 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 42560856 Common - protein phosphatase MSC_0308 32 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 42560728 Common - hypothetical protein MSC_0176 10 None None None 42561344 Common tnp IS1634CI transposase MSC_0822 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560812 Common lplA lipoate protein ligase MSC_0264 75 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 42561260 Common rplN 50S ribosomal protein L14 MSC_0735 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 42560589 Common acpD Acyl carrier protein phosphodiesterase MSC_0029 72 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 42560889 Common - hypothetical protein MSC_0345 3 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42560861 Pathogen - hypothetical protein MSC_0313 1 None None None 42561037 Common nifU NITROGEN FIXATION PROTEIN NIFU MSC_0502 11 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 42561133 Pathogen - hypothetical protein MSC_0604 1 None None None 161723275 Common rpsU 30S ribosomal protein S21 MSC_0541 2 None None None 42561058 Common - hypothetical protein MSC_0523 17 COG5373 COG5373, Predicted membrane protein Function unknown 42560962 Common trmD tRNA (guanine-N1)-methyltransferase MSC_0427 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 42561147 Common atpD F0F1 ATP synthase subunit beta MSC_0618 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 42560882 Common rbfA Ribosome-binding factor A MSC_0335 3 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 42561490 Pathogen cps Glycosyltransferase MSC_0974 1 None None None 42561198 Common - hypothetical protein MSC_0671 2 None None None 42560868 Pathogen - hypothetical protein MSC_0321 2 None None None 42560792 Common - hypothetical protein MSC_0243 39 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 42561283 Common folD methylenetetrahydrofolate dehydrogenase (NADP+)/ methenyltetrahydrofolate cyclohydrolase MSC_0758 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 42561521 Common rplL 50S ribosomal protein L7/L12 MSC_1007 213 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 42560757 Pathogen - hypothetical protein MSC_0205 1 None None None 42560838 Common - GTPase EngB MSC_0290 193 COG0218 COG0218, Predicted GTPase General function prediction only 42561204 Common pgk phosphoglycerate kinase MSC_0678 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 42561293 Common ptsH phosphocarrier protein HPr MSC_0768 125 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 42560970 Common abc ABC transporter, permease and ATP-binding componen MSC_0435 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42561553 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA MSC_1042 192 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 42561102 Pathogen - hypothetical protein MSC_0572 1 None None None 42561064 Common lip3 triacylglycerol lipase MSC_0531 11 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42561377 Pathogen - hypothetical protein MSC_0858 1 None None None 161723273 Common rpmH 50S ribosomal protein L34 MSC_1068 189 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 42561534 Common lppQ Prolipoprotein Q MSC_1021 16 None None None 42560938 Common natA Na+ ABC transporter, ATP-binding component MSC_0398 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42560579 Common EIIA-mtl PTS SYSTEM, MANNITOL-PERMEASE IIA COMPONENT MSC_0019 41 COG4668 MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain Carbohydrate transport and metabolism 42561233 Pathogen - hypothetical protein MSC_0707 1 None None None 42560995 Common - hypothetical protein MSC_0460 2 None None None 42560945 Common - hypothetical protein MSC_0406 3 None None None 42561219 Pathogen lpp Prolipoprotein MSC_0693 1 None None None 42561306 Common tnp Transposase ISMmy1D MSC_0781 6 None None None 42561152 Pathogen - hypothetical protein MSC_0623 2 None None None 42560753 Pathogen - hypothetical protein MSC_0201 1 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 42561130 Common frr ribosome recycling factor MSC_0600 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 42561174 Common pts PTS system, sucrose-specific IIBC component MSC_0646 42 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561341 Pathogen - hypothetical protein MSC_0819 1 None None None 42561014 Common rnc ribonuclease III MSC_0479 215 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 42560775 Common potB spermidine/putrescine ABC transporter permease component MSC_0225 201 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 42561373 Common nrdI ribonucleotide reductase stimulatory protein MSC_0854 37 COG1780 NrdI, Protein involved in ribonucleotide reduction Nucleotide transport and metabolism 42561284 Common - Sodium transport protein MSC_0759 98 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 42561255 Common rplF 50S ribosomal protein L6 MSC_0730 242 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 42561006 Common - hypothetical protein MSC_0471 2 COG1284 COG1284, Uncharacterized conserved protein Function unknown 42560808 Common pfk 6-phosphofructokinase MSC_0260 154 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 42560572 Common metS methionyl-tRNA synthetase MSC_0012 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561436 Pathogen - hypothetical protein MSC_0919 2 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 42560758 Pathogen - hypothetical protein MSC_0206 1 None None None 42561049 Pathogen - hypothetical protein MSC_0514 1 None None None 42560920 Common - hypothetical protein MSC_0378 61 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 42561178 Pathogen - hypothetical protein MSC_0650 1 None None None 42561461 Common - hypothetical protein MSC_0945 27 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 42561162 Pathogen - hypothetical protein MSC_0633 2 None None None 42561382 Common glk GLUCOKINASE MSC_0863 160 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42561139 Common dnaK HEAT SHOCK PROTEIN 70 (CHAPERONE) MSC_0610 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 42561165 Pathogen - hypothetical protein MSC_0637 2 None None None 42561110 Pathogen - hypothetical protein MSC_0580 1 None None None 42560985 Common fmt methionyl-tRNA formyltransferase MSC_0450 214 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 42560955 Common cinA competence-damage inducible protein MSC_0420 164 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 42560841 Common - hypothetical protein MSC_0293 2 None None None 42561398 Common - hypothetical protein MSC_0879 2 COG1288 COG1288, Predicted membrane protein Function unknown 42561104 Common - hypothetical protein MSC_0574 13 None None None 42561315 Common - hypothetical protein MSC_0792 2 None None None 42560688 Common ctrA CTP synthetase MSC_0134 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 42561241 Common truA tRNA pseudouridine synthase A MSC_0715 207 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 42561076 Common ruvB Holliday junction DNA helicase B MSC_0543 221 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 42561169 Common - hypothetical protein MSC_0641 6 COG5293 COG5293, Uncharacterized protein conserved in bacteria Function unknown 42560748 Pathogen - hypothetical protein MSC_0196 1 None None None 42561118 Common ftsZ cell division protein FtsZ MSC_0588 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 42561361 Common bgl beta-glucosidase MSC_0840 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 42561515 Pathogen lpp Prolipoprotein MSC_1001 1 None None None 42561082 Common dinP DNA polymerase IV MSC_0549 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 42561574 Common - putative inner membrane protein translocase component YidC MSC_1066 4 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 42560561 Common dnaA Chromosomal replication initiator protein DnaA MSC_0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 42561531 Common - proton/glutamate symporter MSC_1018 131 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 42560814 Common pdhB Pyruvate dehydrogenase (lipoamide), beta chain MSC_0266 173 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 42561323 Pathogen - hypothetical protein MSC_0800 1 None None None 42561022 Common pstB Phosphate ABC transporter, ATP-binding component MSC_0487 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 42561455 Common lgt(-rpoD) Prolipoprotein diacylglyceryl transferase and tran MSC_0939 85 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 42560611 Pathogen - hypothetical protein MSC_0051 1 COG2433 COG2433, Uncharacterized conserved protein Function unknown 42561538 Pathogen - hypothetical protein MSC_1025 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42560902 Common trpS tryptophan-tRNA ligase MSC_0358 230 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42560891 Common rpsO 30S ribosomal protein S15 MSC_0347 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 42561425 Common mgtA Mg2+ transport ATPase, P-type 1 MSC_0907 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42561446 Pathogen - hypothetical protein MSC_0929 1 None None None 42561508 Pathogen - hypothetical protein MSC_0992 1 None None None 42561227 Common - hypothetical protein MSC_0701 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 42560653 Common - hypothetical protein MSC_0094 20 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 42560802 Common - Hypothetical transmembrane protein related to PAP2 family MSC_0254 2 None None None 42560810 Common thrS threonine-tRNA ligase MSC_0262 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561509 Common epsG Glycosyltransferase MSC_0993 65 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42560669 Common galU UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE MSC_0110 234 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 42561032 Common cbf CMP-BINDING-FACTOR MSC_0497 46 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 42560678 Pathogen - hypothetical protein MSC_0119 1 None None None 42561527 Pathogen - hypothetical protein MSC_1014 1 None None None 42560858 Common - hypothetical protein MSC_0310 3 None None None 42561207 Common dnaB Chromosome replication initiation/membrane attachment protein MSC_0681 8 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 42560952 Common - hypothetical protein MSC_0417 12 COG3599 DivIVA, Cell division initiation protein Cell division and chromosome partitioning 42560718 Common - METHYLTRANSFERASE MSC_0166 159 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 42560707 Common - hypothetical protein MSC_0155 2 None None None 42561004 Common deaD ATP-dependent RNA helicase MSC_0469 236 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 42560887 Common - hypothetical protein MSC_0343 2 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42560969 Common abc ABC transporter, permease and ATP-binding componen MSC_0434 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 42561035 Common - Hypothetical prolipoprotein MSC_0500 3 None None None 42561359 Common fic cell filamentation protein Fic-related protein MSC_0838 32 COG2184 Fic, Protein involved in cell division Cell division and chromosome partitioning 42560992 Common - hypothetical protein MSC_0457 3 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42561145 Common - Ham1 family protein MSC_0616 230 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 42560664 Common nfo endodeoxyribonuclease IV MSC_0105 99 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 42560580 Common srlD sorbitol-6-phosphate dehydrogenase MSC_0020 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 42561144 Common spoU rRNA Methylase (Spou-family) MSC_0615 157 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 42560591 Common hsp33 HEAT SHOCK PROTEIN (33 kDa chaperonin) MSC_0031 78 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 42561090 Common - hypothetical protein MSC_0557 7 COG2731 EbgC, Beta-galactosidase, beta subunit Carbohydrate transport and metabolism 42560828 Common thiI Thiamin biosynthesis protein MSC_0280 93 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 42560671 Common - hypothetical protein MSC_0112 170 COG0344 COG0344, Predicted membrane protein Function unknown 42560603 Common - hypothetical protein MSC_0043 5 COG1737 RpiR, Transcriptional regulators Transcription 42561368 Common hpt hypoxanthine phosphoribosyltransferase MSC_0848 150 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 161723277 Common rpmB 50S ribosomal protein L28 MSC_0483 27 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 42560765 Pathogen sau96I-like type II site-specific deoxyribonuclease (Sau96I-li MSC_0215 2 None None None 42560825 Common - hypothetical protein MSC_0277 45 COG3412 COG3412, Uncharacterized protein conserved in bacteria Function unknown 42561310 Common tnp IS1634AM transposase MSC_0785 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561265 Common rplV 50S ribosomal protein L22 MSC_0740 215 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 42561245 Common rplQ 50S ribosomal protein L17 MSC_0720 215 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 42561409 Common atpB F0F1 ATP synthase subunit A MSC_0891 10 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 42561088 Common - N-acetylmannosamine-6-phosphate 2-epimerase MSC_0555 43 COG3010 NanE, Putative N-acetylmannosamine-6-phosphate epimerase Carbohydrate transport and metabolism 42561105 Common - Hypothetical prolipoprotein MSC_0575 2 None None None 42560625 Pathogen - hypothetical protein MSC_0065 1 COG2364 COG2364, Predicted membrane protein Function unknown 42561274 Common pts PTS system, trehalose-specific IIBC component MSC_0749 44 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561481 Common oppB oligopeptide ABC transporter, permease component MSC_0965 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42560898 Common - nitroreductase family protein MSC_0354 11 COG0778 NfnB, Nitroreductase Energy production and conversion 42560634 Common - hypothetical protein MSC_0075 13 None None None 42561474 Common - hypothetical protein MSC_0958 3 None None None 42561181 Common lpp Prolipoprotein MSC_0653 15 None None None 42560621 Pathogen lpp Prolipoprotein MSC_0061 1 None None None 42561300 Pathogen lpp Prolipoprotein MSC_0775 2 None None None 42561154 Pathogen lpp Prolipoprotein MSC_0625 2 COG2433 COG2433, Uncharacterized conserved protein Function unknown 42561555 Common nox NADH oxidase MSC_1044 244 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 42560875 Common rnh ribonuclease H-related protein MSC_0328 19 COG3341 COG3341, Predicted double-stranded RNA/RNA-DNA hybrid binding protein General function prediction only 42561099 Pathogen - hypothetical protein MSC_0569 1 None None None 42561307 Pathogen lpp Prolipoprotein MSC_0782 1 None None None 42561407 Common atpF ATP SYNTHASE B CHAIN MSC_0889 109 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 42560719 Common mgtE MG2+ TRANSPORT PROTEIN MSC_0167 185 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 42560947 Common engA GTP-binding protein EngA MSC_0408 228 COG1160 COG1160, Predicted GTPases General function prediction only 42561431 Common - hypothetical protein MSC_0913 6 COG4481 COG4481, Uncharacterized protein conserved in bacteria Function unknown 42560880 Common aspS aspartyl-tRNA synthetase MSC_0333 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561281 Pathogen - hypothetical protein MSC_0756 1 None None None 42561414 Common - hypothetical protein MSC_0896 4 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 42560569 Common rbsC-1 Ribose/Galactose ABC transporter, permease component I MSC_0009 121 COG4603 COG4603, ABC-type uncharacterized transport system, permease component General function prediction only 42561149 Pathogen - hypothetical protein MSC_0620 2 COG1512 COG1512, Beta-propeller domains of methanol dehydrogenase type General function prediction only 42561186 Common - hypothetical protein MSC_0658 71 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 42561392 Common ptsG PTS system, glucose-specific, IIBC component MSC_0873 53 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561278 Pathogen - hypothetical protein MSC_0753 1 None None None 42561295 Common - hypothetical protein MSC_0770 2 COG1714 COG1714, Predicted membrane protein/domain Function unknown 42560721 Common - hypothetical protein MSC_0169 6 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 42560598 Common tnp IS1634BT transposase MSC_0038 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560925 Common - hypothetical protein MSC_0385 136 COG1354 COG1354, Uncharacterized conserved protein Function unknown 42560734 Common oppD Oligopeptide ABC transporter, ATP-binding component MSC_0182 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 42560851 Common valS valyl-tRNA synthetase MSC_0303 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561195 Pathogen - hypothetical protein MSC_0668 1 None None None 42560745 Pathogen - hypothetical protein MSC_0193 1 None None None 42561417 Common tnpB IS1296AC_R transposase protein B MSC_0899 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560998 Common recO DNA repair protein recO MSC_0463 11 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 42561311 Common phnB Alkylphosphonate ABC transporter, permease component MSC_0788 33 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 42561296 Common cps glycosyltransferase MSC_0771 21 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42561301 Pathogen - Conserved hypothetical prolipoprotein MSC_0776 1 None None None 42561403 Common atpD F0F1 ATP synthase subunit beta MSC_0885 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 42561379 Common ptsG PTS system, glucose-specific IIBC component MSC_0860 53 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561558 Pathogen - hypothetical protein MSC_1047 1 None None None 42560790 Common - hypothetical protein MSC_0241 67 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42560852 Common - hypothetical protein MSC_0304 18 COG1564 THI80, Thiamine pyrophosphokinase Coenzyme metabolism 42561495 Pathogen - hypothetical protein MSC_0979 1 None None None 42560863 Common - Predicted permease MSC_0315 2 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 42561187 Common - Fic family protein MSC_0659 62 COG3177 COG3177, Uncharacterized conserved protein Function unknown 42561191 Common tnpB IS1296AB_B transposase protein B MSC_0663 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561304 Pathogen - hypothetical protein MSC_0779 1 None None None 42560724 Common tnp IS1634BP transposase MSC_0172 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561091 Common - Sodium:solute symporter family MSC_0558 99 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 42561106 Pathogen - hypothetical protein MSC_0576 1 None None None 42561568 Pathogen lpp Putative variable prolipoprotein MSC_1058 1 None None None 42561067 Common - hypothetical protein MSC_0534 2 None None None 42561215 Common - hypothetical protein MSC_0689 33 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 42560940 Common - hypothetical protein MSC_0400 2 None None None 42560997 Common era GTP-binding protein Era MSC_0462 224 COG1159 Era, GTPase General function prediction only 42561230 Common abc ABC transporter, ATP-binding component (Na+?) MSC_0704 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42561528 Common asnA asparagine synthetase AsnA MSC_1015 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 42560717 Common - hypothetical protein MSC_0165 2 None None None 42560675 Common - hypothetical protein MSC_0116 5 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42560936 Common rpe ribulose-phosphate 3-epimerase MSC_0396 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 42560673 Common ilvA threonine dehydratase MSC_0114 230 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 42561075 Common ruvA holliday junction DNA helicase RuvA MSC_0542 43 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 42561476 Common spoU rRNA Methylase MSC_0960 209 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42561484 Common oppF oligopeptide ABC transporter, ATP-binding component MSC_0968 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 42561432 Common - translation-associated GTPase MSC_0914 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 42561462 Common - hypothetical protein MSC_0946 2 None None None 42560769 Common - DNA METHYLASE MSC_0219 36 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 42561159 Common tnpA IS1296LL transposase protein A MSC_0630 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 161723279 Common nagB glucosamine-6-phosphate deaminase MSC_0129 80 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 42561358 Common pldB lysophospholipase MSC_0837 67 COG2267 PldB, Lysophospholipase Lipid metabolism 42561340 Common - putative variable surface protein MSC_0818 14 None None None 42561030 Common pmi mannose-6-phosphate isomerase MSC_0495 47 COG1482 ManA, Phosphomannose isomerase Carbohydrate transport and metabolism 42560636 Common phnE phosphonate ABC transporter, permease component MSC_0077 88 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 42560760 Common - hypothetical protein MSC_0208 15 None None None 42561420 Common pyrG CTP synthetase MSC_0902 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 42561123 Common rpmF 50S ribosomal protein L32 MSC_0593 45 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 42560794 Common tnpB IS1296OD transposase protein B MSC_0246 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561249 Common map methionyl aminopeptidase MSC_0724 248 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 42561143 Common - Putative hydrolase of the HAD family MSC_0614 79 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42561243 Common abc ABC transporter, ATP-binding component (vitamin B12?) MSC_0717 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 42561429 Common pgsA CDPdiacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase MSC_0911 206 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 42560590 Common abc ABC TRANSPORTER, ATP-BINDING PROTEIN (Antibiotic?) MSC_0030 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 42561270 Common rplC 50S ribosomal protein L3 MSC_0745 248 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 42561084 Common tnp IS1634AA transposase MSC_0551 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560587 Common rpsF 30S ribosomal protein S6 MSC_0027 62 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 42560859 Common - hypothetical protein MSC_0311 176 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 42560777 Pathogen - hypothetical protein MSC_0227 1 None None None 42561138 Common dnaJ heat shock protein DnaJ (chaperone) MSC_0609 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 42561365 Common - Glycosyl hydrolase family protein MSC_0845 36 COG0383 AMS1, Alpha-mannosidase Carbohydrate transport and metabolism 42561057 Common - Hypothetical surface located membrane protein MSC_0522 17 None None None 42560646 Pathogen - hypothetical protein MSC_0087 1 None None None 42561422 Common tnpB IS1296DS transposase protein B MSC_0904 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560706 Common - hypothetical protein MSC_0154 7 None None None 42561388 Pathogen - hypothetical protein MSC_0869 1 None None None 42561451 Common - hypothetical protein MSC_0935 36 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 42561012 Pathogen - hypothetical protein MSC_0477 1 None None None 42561020 Common pstS Phosphate ABC transporter, substrate-binding component MSC_0485 3 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 42561276 Common lacI transcription regulator, LacI family MSC_0751 17 COG1609 PurR, Transcriptional regulators Transcription 42561415 Pathogen lpp Prolipoprotein MSC_0897 2 None None None 42561502 Pathogen - hypothetical protein MSC_0986 1 None None None 42561489 Common epsG Glycosyltransferase MSC_0973 35 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42561023 Common phoU phosphate transport system regulator PhoU MSC_0488 130 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 42561394 Common glk GLUCOKINASE MSC_0875 99 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42561498 Pathogen cps Glycosyltransferase MSC_0982 1 None None None 42561247 Common rpsK 30S ribosomal protein S11 MSC_0722 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 42561444 Pathogen - Hypothetical prolipoprotein MSC_0927 1 None None None 42561572 Common - LICA protein MSC_1064 13 COG0510 CotS, Predicted choline kinase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 42560916 Common - hypothetical protein MSC_0374 3 None None None 42560631 Common trxA THIOREDOXIN MSC_0072 236 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 42561510 Common rplK 50S ribosomal protein L11 MSC_0994 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 42561222 Common pepO endopeptidase O MSC_0696 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 42560783 Common - hypothetical protein MSC_0234 2 None None None 42561055 Common tnp IS1634AD transposase MSC_0520 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560804 Common hpt hypoxanthine phosphoribosyltransferase MSC_0256 155 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 42560908 Pathogen lpp putative variable prolipoprotein MSC_0364 1 None None None 42560763 Common tnpB IS1296JI transposase protein B MSC_0211 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561212 Common tyrS tyrosine-tRNA ligase MSC_0686 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42560815 Common pdhC branched-chain alpha-keto acid dehydrogenase subunit E2 MSC_0267 202 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 42560873 Common - hypothetical protein MSC_0326 2 None None None 42560641 Common - Putative hydrolase from alpha/beta family MSC_0082 20 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42561232 Pathogen - hypothetical protein MSC_0706 1 None None None 42561456 Common ptsK HPr kinase/phosphorylase MSC_0940 73 COG1493 HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism Signal transduction mechanisms 42561362 Common suk Sugar kinase, ROK family MSC_0841 28 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42560612 Pathogen - hypothetical protein MSC_0052 2 None None None 42560694 Common tnpA IS1296EH transposase protein A MSC_0141 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560847 Common - hypothetical protein MSC_0299 14 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42560934 Common pts PTS system, IIA component MSC_0394 33 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 42561235 Common leuS leucyl-tRNA synthetase MSC_0709 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561081 Common - Conserved hypothetical GTPase of unknown function MSC_0548 26 COG1161 COG1161, Predicted GTPases General function prediction only 42560563 Common - Primase-related protein MSC_0003 21 COG1658 COG1658, Small primase-like proteins (Toprim domain) DNA replication, recombination, and repair 127763382 Common trsE transfer complex protein TrsE MSC_0191 29 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 42560948 Common gpsA GLYCEROL-3-PHOSPHATE DEHYDROGENASE NAD(P)+ MSC_0409 182 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 42561166 Common - hypothetical protein MSC_0638 3 None None None 42561109 Pathogen - hypothetical protein MSC_0579 1 None None None 42561272 Common dhaK1 glycerone kinase MSC_0747 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 42561019 Pathogen - hypothetical protein MSC_0484 1 None None None 42560573 Pathogen lpp Prolipoprotein MSC_0013 1 None None None 42561464 Pathogen - hypothetical protein MSC_0948 1 None None None 42561173 Common - Sucrose PTS repressor, DeoR family MSC_0645 114 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 42561072 Common - hypothetical protein MSC_0539 5 None None None 42561339 Pathogen - Putative variable surface protein MSC_0817 1 None None None 42560736 Common oppA OLIGOPEPTIDE ABC transporter, substrate-binding component MSC_0184 6 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 42560901 Common pepQ Xaa-Pro dipeptidase MSC_0357 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 42560843 Common - OXIDOREDUCTASE MSC_0295 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 42561518 Pathogen - hypothetical protein MSC_1004 1 None None None 42560982 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase MSC_0447 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 42561399 Common - hypothetical protein MSC_0880 2 COG1288 COG1288, Predicted membrane protein Function unknown 42561298 Pathogen - hypothetical protein MSC_0773 1 None None None 42560950 Common - hypothetical protein MSC_0411 2 None None None 42560682 Pathogen - hypothetical protein MSC_0126 1 None None None 42561206 Common dnaI PRIMOSOMAL PROTEIN MSC_0680 37 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 42560619 Pathogen - hypothetical protein MSC_0059 1 None None None 42561045 Common parE DNA TOPOISOMERASE IV SUBUNIT B MSC_0510 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 42561405 Common atpA F0F1 ATP synthase subunit alpha MSC_0887 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 42561264 Common rpsC 30S ribosomal protein S3 MSC_0739 217 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 42561115 Common ileS isoleucyl-tRNA synthetase MSC_0585 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42560924 Common - hypothetical protein MSC_0384 2 None None None 42561258 Pathogen - hypothetical protein MSC_0733 1 None None None 42560893 Common infB translation initiation factor IF-2 MSC_0349 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 42561001 Common rpoD RNA polymerase sigma-A factor MSC_0466 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 42561094 Common - hypothetical protein MSC_0561 4 COG2868 COG2868, Predicted ribosomal protein Translation, ribosomal structure and biogenesis 42560959 Common - hypothetical protein MSC_0424 147 COG1576 COG1576, Uncharacterized conserved protein Function unknown 42560961 Common rimM 16S RRNA PROCESSING PROTEIN RIMM MSC_0426 18 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 42561552 Pathogen - hypothetical protein MSC_1041 1 None None None 42560932 Pathogen lpp Prolipoprotein MSC_0392 1 None None None 42560980 Pathogen - hypothetical protein MSC_0445 1 None None None 42560818 Common ackA acetate kinase MSC_0270 162 COG0282 ackA, Acetate kinase Energy production and conversion 42560752 Common mod adenine-specific DNA-methyltransferase MSC_0200 11 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 42560836 Pathogen - hypothetical protein MSC_0288 1 None None None 42561069 Pathogen - hypothetical protein MSC_0536 1 None None None 42560978 Common pfs 5-methylthioadenosine nucleosidase/S-adenosylhomocystein nucleosidase MSC_0443 72 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 42560939 Common - hypothetical protein MSC_0399 2 None None None 42561434 Common - hypothetical protein MSC_0916 38 COG1288 COG1288, Predicted membrane protein Function unknown 42561526 Pathogen - hypothetical protein MSC_1013 1 None None None 42561493 Common glf UDP-galactopuranose mutase MSC_0977 53 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 42561217 Common fur Ferric uptake regulator MSC_0691 17 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 42560988 Common - FKBP-type peptidyl-prolyl isomerase MSC_0453 210 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 42561486 Common glf UDP-galactopyranose mutase MSC_0970 53 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 42560715 Common pepA LEUCYL AMINOPEPTIDASE MSC_0163 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 42561401 Pathogen - hypothetical protein MSC_0882 1 None None None 42560795 Pathogen - hypothetical protein MSC_0247 1 None None None 42560884 Common ribF Riboflavin kinase MSC_0337 160 COG0196 RibF, FAD synthase Coenzyme metabolism 42561120 Pathogen - hypothetical protein MSC_0590 1 None None None 42561411 Common upp uracil phosphoribosyltransferase MSC_0893 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 42561171 Pathogen - hypothetical protein MSC_0643 3 None None None 42560865 Pathogen lpp Prolipoprotein MSC_0317 1 None None None 42561193 Common - hypothetical protein MSC_0665 4 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 42561313 Pathogen phnD Alkylphosphonate ABC transporter, substrate-bindin MSC_0790 1 None None None 42561093 Common rpmA 50S ribosomal protein L27 MSC_0560 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 42560730 Common alaS alanine-tRNA ligase MSC_0178 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42560726 Common tnpB IS1296UK transposase protein B MSC_0174 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560771 Common infC translation initiation factor IF-3 MSC_0221 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 42561060 Common lplA lipoate-protein ligase A MSC_0527 72 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 42560854 Common - hypothetical protein MSC_0306 161 COG1162 COG1162, Predicted GTPases General function prediction only 42561141 Common hrcA heat-inducible transcription repressor HrcA MSC_0612 151 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 42560956 Common recA recombinase A MSC_0421 245 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 42561036 Common nifS nitrogen fixation protein class-V pyridoxal-phosph MSC_0501 234 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 42560585 Common rpsR 30S ribosomal protein S18 MSC_0025 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 42561290 Common - hypothetical protein MSC_0765 3 None None None 42561363 Common frvA PTS system, fructose-specific IIA component MSC_0842 136 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 42561039 Common - peptidase MSC_0504 63 COG3590 PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones 42561321 Pathogen lpp Prolipoprotein MSC_0798 1 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 42560727 Common - hypothetical protein MSC_0175 19 None None None 42561251 Common secY preprotein translocase subunit SecY MSC_0726 216 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 42561197 Common - hypothetical protein MSC_0670 156 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 42561347 Common gpm phosphoglyceromutase MSC_0825 126 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 42560627 Common - hypothetical protein MSC_0067 2 None None None 42560677 Common uhpT HEXOSEPHOSPHATE TRANSPORT PROTEIN MSC_0118 5 None None None 42560704 Common - hypothetical protein MSC_0152 2 None None None 42560660 Common xseA exodeoxyribonuclease VII large subunit MSC_0101 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 42561478 Common nusG TRANSCRIPTION ANTITERMINATION PROTEIN NUSG MSC_0962 215 COG0250 NusG, Transcription antiterminator Transcription 42560967 Common aspS Aspartate-tRNA ligase MSC_0432 211 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561121 Common - MraW methylase family protein MSC_0591 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 42561563 Pathogen - hypothetical protein MSC_1052 1 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561157 Pathogen - hypothetical protein MSC_0628 2 None None None 42560821 Common ptsI PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE MSC_0273 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 42561108 Common acpS holo-[acyl-carrier-protein] synthase MSC_0578 17 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 42561140 Common grpE heat shock protein GrpE MSC_0611 169 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 42561548 Pathogen - hypothetical protein MSC_1037 1 None None None 42561390 Common tnp IS1634CE transposase MSC_0871 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560617 Pathogen - hypothetical protein MSC_0057 1 None None None 42561356 Common - hypothetical protein MSC_0834 2 None None None 42561185 Pathogen - hypothetical protein MSC_0657 1 None None None 42561335 Common - putative variable surface protein MSC_0813 15 None None None 42560606 Common tmk THYMIDYLATE KINASE MSC_0046 230 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 42560972 Pathogen - hypothetical protein MSC_0437 1 None None None 42561214 Common pheT phenylalanine-tRNA ligase MSC_0688 167 COG0073 ARC1, EMAP domain General function prediction only 42561346 Common - Putative hydrolase of the HAD family MSC_0824 67 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42560871 Pathogen abc ABC transporter, permease component (Na+?) MSC_0324 3 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 42561234 Common - hypothetical protein MSC_0708 2 None None None 42560977 Common nadD putative nicotinate-nucleotide adenylyltransferase MSC_0442 156 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 42560809 Common pyk pyruvate kinase MSC_0261 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 42561504 Common cps Glycosyltransferase MSC_0988 67 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42561542 Pathogen - hypothetical protein MSC_1029 1 None None None 42560754 Pathogen - hypothetical protein MSC_0202 1 None None None 42561063 Common lip2 triacylglycerol lipase MSC_0530 24 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42561448 Pathogen - hypothetical protein MSC_0932 2 COG1737 RpiR, Transcriptional regulators Transcription 42561535 Pathogen - hypothetical protein MSC_1022 1 None None None 42560575 Common tnpB IS1296SQ transposase protein B MSC_0015 142 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561512 Pathogen - hypothetical protein MSC_0996 1 None None None 42560655 Common coaE DEPHOSPHO-COA KINASE MSC_0096 3 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 42560785 Common - hypothetical protein MSC_0236 2 None None None 42561443 Common abc ABC transporter, ATP-binding component MSC_0926 63 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 42560739 Pathogen - hypothetical protein MSC_0187 1 None None None 42561513 Common - Transglutaminase MSC_0997 8 COG5279 CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain Cell division and chromosome partitioning 42561413 Common rpiB ribose 5-phosphate isomerase, RpiB MSC_0895 128 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 42560608 Common dnaX DNA polymerase III gamma-tau subunits MSC_0048 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 42560895 Common - hypothetical protein MSC_0351 19 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 42561496 Common epsG Glycosyltransferase MSC_0980 38 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42561253 Common rpsE 30S ribosomal protein S5 MSC_0728 236 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 42560648 Common secA preprotein translocase subunit SecA MSC_0089 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 42560578 Common - Transcriptional regulator, RpiR family MSC_0018 36 COG1737 RpiR, Transcriptional regulators Transcription 42561549 Pathogen - hypothetical protein MSC_1038 1 None None None 42560684 Common nagE PTS system, N-acetylglucosamine-specific IIBC component MSC_0130 50 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42560665 Common ribC/ribF Riboflavin kinase / FAD synthetase MSC_0106 148 COG0196 RibF, FAD synthase Coenzyme metabolism 42560906 Pathogen - hypothetical protein MSC_0362 1 None None None 42560633 Common tnp IS1634BV transposase MSC_0074 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560914 Common tkt transketolase MSC_0372 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 42561224 Pathogen - hypothetical protein MSC_0698 1 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 42561570 Common - AAA family ATPase MSC_1062 236 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 42561328 Common had Hydrolase of the HAD family MSC_0805 95 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42561282 Pathogen - hypothetical protein MSC_0757 1 COG0730 COG0730, Predicted permeases General function prediction only 42561491 Common oppF oligopeptide ABC transporter, permease component MSC_0975 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 42561010 Common relA GTP diphosphokinase MSC_0475 206 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 42561566 Pathogen - hypothetical protein MSC_1055 1 None None None 42560806 Common glpK glycerol kinase MSC_0258 178 COG0554 GlpK, Glycerol kinase Energy production and conversion 42560596 Common - hypothetical protein MSC_0036 24 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 42561043 Common spoU rRNA methylase MSC_0508 174 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 42561375 Common rnr Ribonulease R MSC_0856 194 COG0557 VacB, Exoribonuclease R Transcription 42560922 Pathogen - hypothetical protein MSC_0382 1 None None None 42561551 Common asnA asparagine synthetase AsnA MSC_1040 31 COG2502 AsnA, Asparagine synthetase A Amino acid transport and metabolism 42561052 Pathogen gtsB Glycerol ABC transporter, permease component MSC_0517 1 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 42561040 Common pgi glucose-6-phosphate isomerase MSC_0505 148 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 42561096 Common - hypothetical protein MSC_0563 2 None None None 42560714 Common xylS alpha-xylosidase or alpha-glucosidase MSC_0162 81 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 42561135 Common - hypothetical protein MSC_0606 2 None None None 42560834 Common - Hypothetical prolipoprotein MSC_0286 9 None None None 42560849 Common - oxidoreductase MSC_0301 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 42561029 Common gid tRNA (uracil-5-)-methyltransferase Gid MSC_0494 169 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 42560566 Common gyrB DNA Gyrase Subunit B MSC_0006 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 42561523 Common rpoC DNA-directed RNA polymerase beta' chain MSC_1009 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 42561237 Pathogen lpp Prolipoprotein MSC_0711 1 None None None 42561466 Common dcm Cytosine-specific DNA-methyltransferase MSC_0950 82 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 42560845 Common uvrC excinuclease ABC subunit C MSC_0297 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 42561332 Common - putative variable surface protein MSC_0809 15 None None None 42561079 Pathogen - hypothetical protein MSC_0546 1 None None None 42560638 Common phnD? prolipoprotein, putative phosphonate ABC transport MSC_0079 3 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 42560942 Common - hypothetical protein MSC_0402 5 None None None 42560919 Pathogen - hypothetical prolipoprotein MSC_0377 1 None None None 42561070 Pathogen - hypothetical protein MSC_0537 1 None None None 42561155 Pathogen - hypothetical protein MSC_0626 2 None None None 42561127 Common - hypothetical protein MSC_0597 2 None None None 42561473 Common - hypothetical prolipoprotein MSC_0957 2 None None None 42561208 Common fpg formamidopyrimidine-DNA glycosylase MSC_0682 180 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 42560824 Common dhaK2 glycerone kinase MSC_0276 77 COG2376 DAK1, Dihydroxyacetone kinase Carbohydrate transport and metabolism 42561391 Pathogen - hypothetical protein MSC_0872 1 None None None 42560622 Pathogen - hypothetical protein MSC_0062 1 None None None 42561182 Pathogen - hypothetical protein MSC_0654 1 None None None 42561406 Common atpH ATP SYNTHASE DELTA CHAIN MSC_0888 28 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 42561113 Common rluD ribosomal large subunit pseudouridylate synthase D MSC_0583 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 42560732 Common oppB Oligopeptide ABC transporter, permease component MSC_0180 215 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42561275 Pathogen - hypothetical protein MSC_0750 1 None None None 42560604 Common - Methyltransferase MSC_0044 105 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 42561078 Pathogen - hypothetical protein MSC_0545 1 None None None 42561467 Common dam Adenine-specific DNA-methyltransferase MSC_0951 84 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 161723276 Common gcdH Glycine cleavage system H protein MSC_0529 13 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 42561254 Common rplR 50S ribosomal protein L18 MSC_0729 216 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 42561148 Common atpA F0F1 ATP synthase subunit alpha MSC_0619 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 42561034 Common lpp Prolipoprotein MSC_0499 2 None None None 42561134 Common tnp IS1634BH transposase MSC_0605 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560976 Pathogen - hypothetical protein MSC_0441 1 None None None 42561017 Common - hypothetical protein MSC_0482 2 None None None 42560679 Pathogen lppC Prolipoprotein lppC MSC_0122 1 None None None 42561529 Pathogen - hypothetical protein MSC_1016 1 None None None 42560764 Common - ELONGATION FACTOR TU FAMILY PROTEIN MSC_0214 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 42561261 Common rpsQ 30S ribosomal protein S17 MSC_0736 217 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 42561369 Common purB adenylosuccinate lyase MSC_0849 238 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 42560811 Common nox NADH OXIDASE MSC_0263 243 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 42560855 Common pkn serine/threonine protein kinase MSC_0307 147 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 42561226 Common arcC carbamate kinase MSC_0700 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 42560663 Pathogen - Hypothetical prolipoprotein MSC_0104 1 None None None 42560583 Common recG probable DNA recombinase recG MSC_0023 36 COG2865 COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen Transcription 42561353 Common frvB PTS system, fructose-specific IIBC component MSC_0831 131 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 42561246 Common rpoA DNA-directed RNA polymerase subunit alpha MSC_0721 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 42561480 Common oppA Oligopeptide ABC transporter, substrate-binding component MSC_0964 9 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 42561203 Common - hypothetical protein MSC_0677 3 None None None 42560713 Common ptsG PTS SYSTEM, GLUCOSE-SPECIFIC IIBC COMPONENT MSC_0161 6 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561199 Common tnp IS1634AS transposase MSC_0672 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560720 Common tnp IS1634BZ transposase MSC_0168 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561524 Common tnp IS1634BX transposase MSC_1011 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560830 Common - hypothetical protein MSC_0282 19 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42560819 Pathogen lpp Prolipoprotein MSC_0271 2 None None None 42560797 Common tnp IS1634AG transposase MSC_0249 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561280 Common - hypothetical protein MSC_0755 15 None None None 42560883 Common truB tRNA pseudouridine synthase B MSC_0336 243 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 42560930 Pathogen vmm Variable surface protein vmm (prolipoprotein) MSC_0390 1 None None None 42560867 Pathogen - hypothetical protein MSC_0320 2 None None None 42561097 Common - Tetrapyrrole methylas family protein MSC_0564 207 COG0313 COG0313, Predicted methyltransferases General function prediction only 42561292 Common - Conserved hypothetical transmembrane protein, CAAX amino terminal protease family MSC_0767 9 None None None 42560629 Common lysS Lysine-tRNA ligase MSC_0069 240 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 42560993 Common - ThiJ/PfpI family protein MSC_0458 121 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 42560878 Common - hypothetical protein MSC_0331 2 None None None 42561305 Pathogen - Putative C5 methylase (MAV1virus-like) MSC_0780 1 None None None 42560944 Common - hypothetical protein MSC_0405 2 COG1906 COG1906, Uncharacterized conserved protein Function unknown 42561308 Pathogen - hypothetical protein MSC_0783 1 None None None 42560860 Common - hypothetical protein MSC_0312 7 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 161723274 Common rpsH 30S ribosomal protein S8 MSC_0731 227 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 42560840 Pathogen - hypothetical protein MSC_0292 1 None None None 42561376 Common smpB SsrA-binding protein MSC_0857 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 42560971 Common - hypothetical protein MSC_0436 2 None None None 42560729 Common lppC Prolipoprotein C MSC_0177 15 None None None 42560937 Pathogen lpp Prolipoprotein MSC_0397 1 None None None 42561101 Common tnp Transposase ISMmy1F MSC_0571 6 None None None 42561533 Common pncA pyrazinamidase/nicotinamidase MSC_1020 129 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 42561345 Common tpi TRIOSEPHOSPHATE ISOMERASE MSC_0823 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 42561554 Common - proton/glutamate symporter MSC_1043 130 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 42561318 Common - translation initiation inhibitor MSC_0795 181 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 42561372 Common nrdE ribonucleotide-diphosphate reductase subunit alpha MSC_0853 220 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 42561239 Common rplM 50S ribosomal protein L13 MSC_0713 220 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 42561268 Common rplW 50S ribosomal protein L23 MSC_0743 211 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 42561487 Common galE UDP-glucose 4-epimerase MSC_0971 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 42561547 Common tnp IS1634CM transposase MSC_1036 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561395 Common tnp IS1634AZ transposase MSC_0876 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560986 Common efp Elongation factor P MSC_0451 217 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 42561111 Common dctD dCMP deaminase MSC_0581 92 COG2131 ComEB, Deoxycytidylate deaminase Nucleotide transport and metabolism 42561289 Common ligA DNA ligase MSC_0764 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 42561460 Common uvrB excinuclease ABC subunit B MSC_0944 228 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 42561177 Common recD EXODEOXYRIBONUCLEASE V ALPHA CHAIN MSC_0649 130 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 42560994 Common abc ABC transporter, ATP-binding and permease protein MSC_0459 13 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 42561381 Common tnp IS1634AX transposase MSC_0862 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561562 Common - hypothetical protein MSC_1051 50 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42561163 Pathogen lpp Prolipoprotein MSC_0635 2 None None None 42560839 Pathogen - hypothetical protein MSC_0291 1 None None None 42560917 Common gidA tRNA (uracil-5-)-methyltransferase Gid MSC_0375 151 COG1206 Gid, NAD(FAD)-utilizing enzyme possibly involved in translation Translation, ribosomal structure and biogenesis 42561336 Common tnp IS1634CHBZ transposase MSC_0814 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561077 Common pdhD dihydrolipoamide dehydrogenase MSC_0544 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 42560693 Common fbaA2 fructose-bisphosphate aldolase class II MSC_0139 177 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 42560614 Common ptsG PTS system, glucose-specific IIABC component MSC_0054 50 COG1263 PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Carbohydrate transport and metabolism 42561471 Common rplI 50S ribosomal protein L9 MSC_0955 138 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 42560773 Common rplT 50S ribosomal protein L20 MSC_0223 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 42561119 Common - hypothetical protein MSC_0589 2 None None None 42560954 Common lpp prolipoprotein MSC_0419 20 None None None 42561048 Pathogen - hypothetical protein MSC_0513 1 None None None 42561026 Common - hypothetical protein MSC_0491 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 42561569 Common - hypothetical protein MSC_1061 25 None None None 42561005 Common - hypothetical protein MSC_0470 3 COG1284 COG1284, Uncharacterized conserved protein Function unknown 42560711 Common fusA elongation factor G MSC_0159 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 42560747 Pathogen - hypothetical protein MSC_0195 1 None None None 42561050 Pathogen - hypothetical protein MSC_0515 1 None None None 42560601 Pathogen - hypothetical protein MSC_0041 1 None None None 42560928 Common - deoxyguanosine kinase MSC_0388 40 COG1428 COG1428, Deoxynucleoside kinases Nucleotide transport and metabolism 42560885 Pathogen - hypothetical protein MSC_0338 1 None None None 42561454 Common trxB thioredoxin reductase (NADPH) MSC_0938 249 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 42561190 Common tnpA IS1296AB_B transposase protein A MSC_0662 13 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560767 Common sun Sun family protein MSC_0217 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 42561131 Common pyrH Uridylate kinase MSC_0601 214 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 42561342 Common - hypothetical protein MSC_0820 4 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 42560756 Pathogen - hypothetical protein MSC_0204 1 None None None 42561505 Common tnp IS1634CB transposase MSC_0989 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561015 Common plsX fatty acid/phospholipid synthesis protein MSC_0480 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 42561209 Common polA DNA POLYMERASE I MSC_0683 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 42561469 Pathogen - hypothetical protein MSC_0953 1 None None None 42561098 Pathogen - hypothetical protein MSC_0568 1 None None None 42561041 Pathogen - hypothetical protein MSC_0506 1 None None None 42560657 Common tnp IS1634AP transposase MSC_0098 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561426 Common - Amino acid permease MSC_0908 4 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42560912 Common - hypothetical protein MSC_0370 6 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 42560650 Common polA DNA POLYMERASE I, 5'-3' exonuclease MSC_0091 216 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 42560666 Common - hypothetical protein MSC_0107 54 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 42560661 Common nusB transcription termination factor nusB MSC_0102 32 COG0781 NusB, Transcription termination factor Transcription 42560787 Common tnpA IS1296FJ transposase protein A MSC_0238 7 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 42561514 Pathogen - hypothetical protein MSC_0998 1 None None None 42560974 Common obgE GTPase ObgE MSC_0439 249 COG0536 Obg, Predicted GTPase General function prediction only 42560842 Common - hypothetical protein MSC_0294 2 None None None 42561575 Common rnpA Ribonuclease P (protein C5) MSC_1067 32 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 42561326 Common phnC alkylphosphonate ABC transporter, ATP-binding component MSC_0803 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 42560642 Common gcp O-SIALOGLYCOPROTEIN ENDOPEPTIDASE MSC_0083 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 42560698 Common rpmE 50S ribosomal protein L31 MSC_0146 125 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 42560702 Common prfA peptide chain release factor 1 MSC_0150 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 42561540 Pathogen - hypothetical protein MSC_1027 1 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 42560807 Common glpO glycerol-3-phospate oxidase MSC_0259 113 COG0579 COG0579, Predicted dehydrogenase General function prediction only 42561367 Pathogen lpp Putative variable prolipoprotein MSC_0847 1 None None None 42561384 Common - Putative membrane arginine transporter MSC_0865 23 COG1288 COG1288, Predicted membrane protein Function unknown 42561087 Common - Xaa-His dipeptidase MSC_0554 153 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 42560568 Common rbsC-2 Ribose/Galactose ABC transporter, permease component II MSC_0008 109 COG1079 COG1079, Uncharacterized ABC-type transport system, permease component General function prediction only 42561441 Pathogen - Hypothetical prolipoprotein MSC_0924 2 None None None 42561351 Common manB phosphoglucomutase or phosphomannomutase MSC_0829 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 42560592 Common - hypothetical protein MSC_0032 11 None None None 42560581 Common EIIBC-mtl PTS SYSTEM, MANNITOL-PERMEASE IIBC COMPONENT MSC_0021 41 COG2213 MtlA, Phosphotransferase system, mannitol-specific IIBC component Carbohydrate transport and metabolism 42561189 Pathogen - hypothetical protein MSC_0661 1 None None None 42560963 Common rplS 50S ribosomal protein L19 MSC_0428 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 42561366 Common frvB PTS system, fructose-specific IIBC component MSC_0846 68 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 42561033 Common hit histidine triad protein MSC_0498 229 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 42561146 Pathogen lpp Prolipoprotein MSC_0617 1 None None None 42560735 Common oppF Oligopeptide ABC transporter, ATP-binding component MSC_0183 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 42560968 Common - hypothetical protein MSC_0433 2 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 42560644 Common trmE tRNA modification GTPase TrmE MSC_0085 224 COG0486 ThdF, Predicted GTPase General function prediction only 42560708 Common cls cardiolipin synthetase MSC_0156 137 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 42561003 Common - hypothetical protein MSC_0468 23 COG0327 COG0327, Uncharacterized conserved protein Function unknown 42561343 Common nagB GLUCOSAMINE-6-PHOSPHATE DEAMINASE MSC_0821 87 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 42561089 Common - ROK family protein MSC_0556 27 COG1940 NagC, Transcriptional regulator/sugar kinase Transcription / Carbohydrate transport and metabolism 42561378 Common tnp IS1634AL transposase MSC_0859 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42560888 Pathogen - hypothetical protein MSC_0344 1 None None None 42560857 Pathogen - hypothetical protein MSC_0309 1 None None None 42561482 Common oppC oligopeptide ABC transporter, permease component MSC_0966 212 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 42560915 Pathogen - hypothetical protein MSC_0373 1 None None None 42560820 Common kdtB PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE MSC_0272 208 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 42561522 Common rpoB DNA-directed RNA polymerase subunit beta MSC_1008 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 42560588 Common csp COLD SHOCK PROTEIN MSC_0028 177 COG1278 CspC, Cold shock proteins Transcription 42561180 Common - hypothetical protein MSC_0652 4 COG4487 COG4487, Uncharacterized protein conserved in bacteria Function unknown 42560635 Common comEC competence protein ComEC MSC_0076 94 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 42561236 Common - hypothetical protein MSC_0710 3 None None None 42561475 Common cysS cysteine-tRNA ligase MSC_0959 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42560862 Common - hypothetical protein MSC_0314 2 None None None 42560890 Pathogen - hypothetical protein MSC_0346 1 None None None 42561273 Common aglA Alpha-glucosidase MSC_0748 133 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 42560850 Common - hypothetical protein MSC_0302 87 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 42561153 Pathogen - hypothetical protein MSC_0624 2 COG3356 COG3356, Predicted membrane protein Function unknown 161723278 Common rpsL 30S ribosomal protein S12 MSC_0157 244 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 42561387 Common mgtA Mg(2+) transport ATPase, P-type MSC_0868 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 42560624 Common ald alanine dehydrogenase MSC_0064 167 COG0686 Ald, Alanine dehydrogenase Amino acid transport and metabolism 42561266 Common rpsS 30S ribosomal protein S19 MSC_0741 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 42561125 Common pheT phenylalanine-tRNA ligase beta subunit MSC_0595 217 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 42560602 Common - hypothetical protein MSC_0042 153 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 42560826 Common rpsD 30S ribosomal protein S4 MSC_0278 245 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 42560897 Common - hypothetical protein MSC_0353 11 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 42561393 Common - hypothetical protein MSC_0874 53 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 42561240 Common - Predicted permease MSC_0714 9 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 42561544 Common tnp Transposase ISMmy1A MSC_1031 6 None None None 42560946 Common cmk cytidylate kinase MSC_0407 204 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 42561059 Common - NADH dependent flavin oxidoreductase MSC_0526 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 42560991 Common lpp Prolipoprotein MSC_0456 4 None None None 42560832 Pathogen - hypothetical protein MSC_0284 1 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 42561080 Common - hypothetical protein MSC_0547 2 None None None 42561556 Common pncA Pyrazinamidase/nicotinamidase MSC_1045 129 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 42560599 Common ftsH ATP-dependent zinc metallopeptidase FtsH MSC_0039 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 42560791 Common - hypothetical protein MSC_0242 10 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 42561439 Pathogen - hypothetical prolipoprotein MSC_0922 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42561103 Pathogen - hypothetical protein MSC_0573 1 None None None 42560620 Common tnp IS1634BK transposase MSC_0060 29 COG5421 COG5421, Transposase DNA replication, recombination, and repair 42561248 Common rpsM 30S ribosomal protein S13 MSC_0723 241 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 42560722 Pathogen - hypothetical protein MSC_0170 1 None None None 42560571 Common rbsB Ribose/galactose ABC transporter, substrate-binding component MSC_0011 6 COG1744 Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein General function prediction only 42560835 Common - hypothetical protein MSC_0287 8 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 42561571 Common - Conserved hypothetical prolipoprotein MSC_1063 2 None None None 42560973 Common - hypothetical protein MSC_0438 2 None None None 42560762 Pathogen - hypothetical protein MSC_0210 1 None None None 42561430 Common gidB glucose-inhibited division protein B MSC_0912 198 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 42560710 Common rpsG 30S ribosomal protein S7 MSC_0158 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 42560869 Common - conserved hypothetical prolipoprotein (abc transporter?) MSC_0322 8 None None None 42560881 Common hisS histidyl-tRNA synthetase MSC_0334 240 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 42561065 Common ldh L-lactate dehydrogenase MSC_0532 166 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 42561404 Common atpG F0F1 ATP synthase subunit gamma MSC_0886 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 42560759 Common - hypothetical protein MSC_0207 2 None None None 42561294 Common pcrA ATP-dependent DNA helicase MSC_0769 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 42561046 Common parC TOPOISOMERASE IV SUBUNIT A MSC_0511 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 42561437 Pathogen - hypothetical protein MSC_0920 2 None None None 42561397 Common - PUTATIVE MEMBRANE ARGININE TRANSPORTER MSC_0878 12 COG1288 COG1288, Predicted membrane protein Function unknown 42561168 Common - hypothetical protein MSC_0640 4 None None None 42561458 Common folC dihydrofolate:folylpolyglutamate synthase MSC_0942 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 42561151 Pathogen - hypothetical protein MSC_0622 2 None None None 42561516 Pathogen - hypothetical protein MSC_1002 1 None None None 42560926 Common - hypothetical protein MSC_0386 122 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 42561013 Common - hypothetical protein MSC_0478 8 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 42560776 Common potCD Spermidine/putrescine ABC transporter, permease and substrate-binding component MSC_0226 152 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 42561025 Common - gene regulatory 13K protein MSC_0490 21 COG2739 COG2739, Uncharacterized protein conserved in bacteria Function unknown 42561316 Common - hypothetical protein MSC_0793 3 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42561117 Common - hypothetical protein MSC_0587 20 COG1799 COG1799, Uncharacterized protein conserved in bacteria Function unknown 42561386 Common - hypothetical protein MSC_0867 2 COG1288 COG1288, Predicted membrane protein Function unknown 42560689 Common - hypothetical protein MSC_0135 13 None None None 42561539 Common - hypothetical protein MSC_1026 50 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 42560903 Pathogen - hypothetical protein MSC_0359 4 None None None 42561338 Common - putative variable surface protein MSC_0816 15 None None None 42561349 Common - hypothetical protein MSC_0827 3 None None None 42561324 Pathogen abc ABC transporter, permease component MSC_0801 1 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 42561532 Common nox NADH oxidase MSC_1019 244 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 42560984 Common - hypothetical protein MSC_0449 18 None None None 42560637 Common phnC phosphonate ABC transporter, ATP-binding component MSC_0078 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 42560681 Pathogen - hypothetical protein MSC_0124 1 None None None 42561164 Pathogen - hypothetical protein MSC_0636 2 None None None 42560813 Common pdhA pyruvate dehydrogenase (lipoamide), alpha chain MSC_0265 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 42560749 Common - hypothetical protein MSC_0197 5 None None None 42561066 Common nagA N-acetylglucosamine-6-phosphate deacetylase MSC_0533 120 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 42561452 Common - hypothetical protein MSC_0936 2 None None None 42561545 Pathogen lpp Putative variable prolipoprotein MSC_1033 1 None None None 42561360 Common - hypothetical protein MSC_0839 17 COG3589 COG3589, Uncharacterized conserved protein Function unknown 42561056 Pathogen - hypothetical protein MSC_0521 1 None None None 42560892 Common - hypothetical protein MSC_0348 2 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 42560700 Common dhh DHH family protein (MgpA-like protein) MSC_0148 74 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 42561228 Common - Amino acid transporter MSC_0702 111 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 42561210 Common dnaE DNA polymerase III alpha chain MSC_0684 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 42560899 Common polC DNA polymerase III alpha chain MSC_0355 217 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 42561408 Common atpE ATP SYNTHASE C CHAIN MSC_0890 6 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 42560740 Common - hypothetical protein MSC_0188 3 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 42560659 Common xseB Exodeoxyribonuclease VII small subunit MSC_0100 2 None None None 42561220 Pathogen - hypothetical protein MSC_0694 1 None None None 42561500 Common glf UDP-galactopyranose mutase MSC_0984 54 COG0562 Glf, UDP-galactopyranose mutase Cell envelope biogenesis, outer membrane 42561447 Common topA DNA topoisomerase I MSC_0931 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 42560801 Common eno phosphopyruvate hydratase MSC_0253 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 42560935 Common ulaA ascorbate-specific PTS system enzyme IIC/IIB MSC_0395 37 COG3037 SgaT, Uncharacterized protein conserved in bacteria Function unknown 42560668 Common cps Glycosyltransferase MSC_0109 67 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 42561374 Common nrdF ribonucleotide-diphosphate reductase subunit beta MSC_0855 49 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 42561424 Common - hypothetical protein MSC_0906 16 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 42561419 Common - hypothetical protein MSC_0901 13 None None None 42560652 Common - hypothetical protein MSC_0093 32 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 42561287 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A MSC_0762 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 42561507 Pathogen - hypothetical protein MSC_0991 1 None None None 42560691 Common tnpB IS1296MP transposase protein B MSC_0137 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 42560910 Common lip1 triacylglycerol lipase MSC_0368 10 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 42560789 Common p72 IMMUNODOMINANT PROTEIN P72 PRECURSOR MSC_0240 2 None None None 42561573 Common - hypothetical protein MSC_1065 17 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 42561175 Common fruK 1-phosphofructokinase MSC_0647 15 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 42560610 Common guaC guanosine 5'-monophosphate oxidoreductase MSC_0050 233 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 42561501 Common galE UDPglucose 4-epimerase MSC_0985 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 42560697 Common glpQ glycerophosphodiester phosphodiesterase MSC_0145 40 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion