Onion yellows phytoplasma OY-M, complete genome NC_005303 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 39939205 Pathogen - hypothetical protein PAM719 1 None None None 39939054 Pathogen - hypothetical protein PAM568 2 None None None 39938897 Pathogen - hypothetical protein PAM411 1 None None None 39939214 Pathogen - hypothetical protein PAM728 4 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938668 Common - hypothetical protein PAM182 163 COG1162 COG1162, Predicted GTPases General function prediction only 39939114 Common rpoD DNA-directed RNA polymerase sigma subunit PAM628 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39938952 Common trpS tryptophanyl-tRNA synthetase PAM466 232 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938801 Common uvrD ATP-dependent DNA helicase PAM315 112 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938881 Common dam site-specific DNA methylase PAM395 49 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39938890 Pathogen - hypothetical protein PAM404 1 None None None 39939092 Pathogen - hypothetical protein PAM606 2 None None None 39938682 Pathogen - hypothetical protein PAM196 1 None None None 39938871 Common - hypothetical protein PAM385 29 None None None 39938861 Common - hypothetical protein PAM375 9 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938710 Common rpmJ 50S ribosomal protein L36 PAM224 10 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 39939134 Common - hypothetical protein PAM648 6 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39939187 Pathogen - hypothetical protein PAM701 2 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938943 Common artI ABC-type amino acid transport system, periplasmic component PAM457 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39939232 Common - hypothetical protein PAM746 75 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 39938749 Common rpsG 30S ribosomal protein S7 PAM263 239 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 39938965 Pathogen - hypothetical protein PAM479 1 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 39938520 Pathogen - hypothetical protein PAM034 1 None None None 39938719 Common metG methionyl-tRNA synthetase PAM233 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938728 Common himA bacterial nucleoid DNA-binding protein PAM242 205 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939182 Pathogen - hypothetical protein PAM696 2 None None None 39938670 Common ileS isoleucyl-tRNA synthetase PAM184 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938557 Common - hypothetical protein PAM071 8 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39939013 Common uvrD ATP-dependent DNA helicase PAM527 116 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938759 Common - uncharacterized BCR PAM273 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 39938752 Common - hypothetical protein PAM266 21 COG4760 COG4760, Predicted membrane protein Function unknown 39939038 Common - hypothetical protein PAM552 183 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39938787 Common - hypothetical protein PAM301 42 COG2179 COG2179, Predicted hydrolase of the HAD superfamily General function prediction only 39938998 Common ssb single-stranded DNA-binding protein PAM512 134 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938577 Pathogen - hypothetical protein PAM091 2 None None None 39939060 Common tra5 putative transposase PAM574 129 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938622 Common rpsO 30S ribosomal protein S15 PAM136 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 39939119 Common - hypothetical protein PAM633 150 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 39938777 Common - hypothetical protein PAM291 25 None None None 39939088 Common aceF branched-chain alpha-keto acid dehydrogenase subunit E2 PAM602 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 39938730 Common rpmG 50S ribosomal protein L33 PAM244 91 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 39939010 Common dnaG DNA primase PAM524 137 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938826 Pathogen - hypothetical protein PAM340 2 None None None 39938635 Common - hypothetical protein PAM149 3 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 39938591 Common rpmE 50S ribosomal protein L31 PAM105 137 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 39938978 Common - hypothetical protein PAM492 7 None None None 39938514 Common ibpA molecular chaperone PAM028 97 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 39938494 Common rfaG 1,2-diacylglycerol 3-glucosyltransferase PAM008 186 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 39939045 Common uvrD ATP-dependent DNA helicase PAM559 110 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938770 Common eno enolase PAM284 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 39938598 Pathogen - hypothetical protein PAM112 1 None None None 39938824 Pathogen - hypothetical protein PAM338 2 None None None 39938563 Common artM ABC-type amino acid transport system, permease component PAM077 145 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39938836 Common - hypothetical protein PAM350 4 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 39938782 Common - hypothetical protein PAM296 4 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 39938683 Pathogen - hypothetical protein PAM197 1 None None None 39938705 Common rplO 50S ribosomal protein L15 PAM219 179 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 39939152 Common tra5 putative transposase PAM666 124 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938844 Common - hypothetical protein PAM358 74 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39938550 Common hflB ATP-dependent Zn protease PAM064 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39939009 Common dnaB replicative DNA helicase PAM523 196 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938939 Common srmB superfamily II DNA and RNA helicase PAM453 228 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 39938538 Pathogen - hypothetical protein PAM052 2 None None None 39938508 Common dppB ABC-type dipeptide/oligopeptide transport system, permease component PAM022 182 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 39939143 Pathogen - hypothetical protein PAM657 1 None None None 39939000 Common - hypothetical protein PAM514 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938852 Common hflB ATP-dependent Zn protease PAM366 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938873 Common - hypothetical protein PAM387 5 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39939094 Common rnc dsRNA-specific ribonuclease PAM608 216 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 39938582 Common phnL ABC-type transport system, involved in lipoprotein release, ATPase component PAM096 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 39939192 Common hrcA heat-inducible transcription repressor PAM706 150 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 39938739 Common rpmG ribosomal protein L33 PAM253 47 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 39938679 Common - hypothetical protein PAM193 248 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 39938789 Common smtA SAM-dependent methyltransferase PAM303 29 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 39938835 Pathogen - hypothetical protein PAM349 2 None None None 39939157 Common cspC cold shock protein PAM671 158 COG1278 CspC, Cold shock proteins Transcription 39938694 Pathogen rpmC 50S ribosomal protein L29 PAM208 2 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 39939075 Common lysU lysyl-tRNA synthetase class II PAM589 236 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 39938762 Common efp translation elongation factor EF-P PAM276 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 39938906 Common himA bacterial nucleoid DNA-binding protein PAM420 4 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938984 Common gyrB DNA gyrase beta subunit PAM498 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 39939237 Common ugpA ABC-type sugar transport system, permease component PAM751 170 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 39938742 Common rplK 50S ribosomal protein L11 PAM256 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 39938993 Pathogen - hypothetical protein PAM507 2 None None None 39938501 Common sua5 translation factor PAM015 217 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 39938951 Common polC DNA polymerase III alpha subunit PAM465 205 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 39938516 Common mgtA cation transport ATPase PAM030 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 39938543 Pathogen - hypothetical protein PAM057 1 COG1480 COG1480, Predicted membrane-associated HD superfamily hydrolase General function prediction only 39938914 Common dnaB replicative DNA helicase PAM428 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938922 Common - hypothetical protein PAM436 168 COG0344 COG0344, Predicted membrane protein Function unknown 39938619 Pathogen nlpA ABC-type uncharacterized transport system, periplasmic component PAM133 4 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 39938888 Pathogen himA bacterial nucleoid DNA-binding protein PAM402 4 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939023 Pathogen - hypothetical protein PAM537 2 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 39938658 Common fba fructose/tagatose bisphosphate aldolase PAM172 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 39938589 Common - cytosine/adenosine deaminase PAM103 211 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 39939086 Common acoA thiamine pyrophosphate-dependent dehydrogenase, E1 component alpha subunit PAM600 155 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 39938754 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA PAM268 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 39938612 Common spoT guanosine polyphosphate pyrophosphohydrolase/synthetase PAM126 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 39938654 Common frr ribosome recycling factor PAM168 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 39938963 Common - hypothetical protein PAM477 4 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938868 Pathogen - hypothetical protein PAM382 1 None None None 39938971 Pathogen - hypothetical protein PAM485 2 None None None 39939179 Common smc chromosome segregation ATPase homolog PAM693 145 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 39939043 Pathogen - hypothetical protein PAM557 2 COG5280 COG5280, Phage-related minor tail protein Function unknown 39938608 Pathogen amp antigenic membrane protein PAM122 1 None None None 39938502 Common holA DNA polymerase III delta subunit PAM016 22 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 39938899 Common uvrD ATP-dependent DNA helicase PAM413 44 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938958 Common rpsP 30S ribosomal protein S16 PAM472 206 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 39939015 Pathogen - hypothetical protein PAM529 2 None None None 39939175 Pathogen - hypothetical protein PAM689 2 None None None 39939212 Common ssb single-stranded DNA-binding protein PAM726 145 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39939108 Common - hypothetical protein PAM622 10 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39939163 Common - hypothetical protein PAM677 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938933 Common tldD hypothetical protein PAM447 162 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 39939067 Common folP dihydropteroate synthase PAM581 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 39938817 Pathogen - hypothetical protein PAM331 2 None None None 39938627 Common cysS cysteinyl-tRNA synthetase PAM141 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938643 Pathogen - hypothetical protein PAM157 3 None None None 39938886 Pathogen - hypothetical protein PAM400 2 None None None 39938593 Pathogen - hypothetical protein PAM107 1 None None None 39938677 Common oppA ABC-type dipeptide/oligopeptide transport system, periplasmic component PAM191 128 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 39938606 Common groES chaperonin GroES PAM120 9 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 39938496 Common ssb single-stranded DNA-binding protein PAM010 203 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938976 Common artM ABC-type amino acid transport system, permease component PAM490 166 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39939128 Common tra5 putative transposase PAM642 127 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938549 Pathogen himA bacterial nucleoid DNA-binding protein PAM063 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939234 Common - exopolyphosphatase-related protein PAM748 74 COG0618 COG0618, Exopolyphosphatase-related proteins General function prediction only 39938559 Pathogen - hypothetical protein PAM073 2 None None None 39939062 Pathogen - hypothetical protein PAM576 2 None None None 39939077 Common dnaE DNA polymerase III alpha subunit PAM591 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 39939184 Common himA bacterial nucleoid DNA-binding protein PAM698 8 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939031 Common - hypothetical protein PAM545 9 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938620 Common - permease component of an uncharacterized ABC transporter PAM134 83 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 39939189 Common dnaJ molecular chaperone DnaJ PAM703 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 39938794 Pathogen - hypothetical protein PAM308 2 COG3859 COG3859, Predicted membrane protein Function unknown 39938575 Common obgE GTPase ObgE PAM089 249 COG0536 Obg, Predicted GTPase General function prediction only 39938960 Common secA preprotein translocase subunit SecA PAM474 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 39939145 Common potA ABC-type spermidine/putrescine transport systems, ATPase component PAM659 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 39938833 Pathogen - hypothetical protein PAM347 2 None None None 39938523 Pathogen smc chromosome segregation ATPase homolog PAM037 1 None None None 39938854 Pathogen - hypothetical protein PAM368 2 None None None 161611248 Common rplA 50S ribosomal protein L1 PAM257 240 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 39938584 Pathogen - hypothetical protein PAM098 2 None None None 39938808 Pathogen - hypothetical protein PAM322 1 None None None 39938792 Common ksgA dimethyladenosine transferase PAM306 12 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 39938685 Common rpsJ 30S ribosomal protein S10 PAM199 243 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 39938696 Common rplN 50S ribosomal protein L14 PAM210 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 39939002 Pathogen smc chromosome segregation ATPase homolog PAM516 2 None None None 39938764 Common - hypothetical protein PAM278 91 COG1161 COG1161, Predicted GTPases General function prediction only 39938645 Common ackA acetate kinase PAM159 161 COG0282 ackA, Acetate kinase Energy production and conversion 39939224 Common leuS leucyl-tRNA synthetase PAM738 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938799 Pathogen - hypothetical protein PAM313 2 COG5280 COG5280, Phage-related minor tail protein Function unknown 39938819 Common - hypothetical protein PAM333 3 None None None 39938780 Common folA dihydrofolate reductase PAM294 143 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 39938930 Pathogen - hypothetical protein PAM444 2 None None None 39938843 Pathogen himA bacterial nucleoid DNA-binding protein PAM357 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938581 Pathogen - hypothetical protein PAM095 3 None None None 39938732 Common proS prolyl-tRNA synthetase PAM246 238 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39939051 Common dam site-specific DNA methylase PAM565 81 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39938803 Pathogen himA bacterial nucleoid DNA-binding protein PAM317 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938905 Pathogen - hypothetical protein PAM419 2 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 39938504 Common valS valyl-tRNA synthetase PAM018 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938912 Common hflB ATP-dependent Zn protease PAM426 249 COG1222 RPT1, ATP-dependent 26S proteasome regulatory subunit Posttranslational modification, protein turnover, chaperones 39938617 Common rluA pseudouridylate synthase PAM131 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 39938956 Common rplS 50S ribosomal protein L19 PAM470 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 39939150 Common rpt1 ATP-dependent 26S proteasome regulatory subunit PAM664 237 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39939096 Pathogen - hypothetical protein PAM610 2 None None None 39938518 Pathogen - hypothetical protein PAM032 1 None None None 39939203 Common - hypothetical protein PAM717 215 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 39938725 Common cmk cytidylate kinase PAM239 207 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 39939155 Pathogen - hypothetical protein PAM669 1 None None None 39939025 Pathogen - hypothetical protein PAM539 2 None None None 39938772 Common citS malate/citrate symporter PAM286 28 COG3493 CitS, Na+/citrate symporter Energy production and conversion 39939165 Common ftsY signal recognition particle-docking protein FtsY PAM679 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 39939210 Common - hypothetical protein PAM724 7 None None None 39938676 Common dppB ABC-type dipeptide/oligopeptide transport system, permease component PAM190 217 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 39938703 Common rpsE 30S ribosomal protein S5 PAM217 244 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 39938708 Common map methionine aminopeptidase PAM222 245 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 39938610 Common nadE NAD synthase PAM124 10 None None None 39939195 Pathogen - hypothetical protein PAM709 1 None None None 39938879 Common hflB ATP-dependent Zn protease PAM393 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938863 Common - hypothetical protein PAM377 47 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 39938625 Common rpsI 30S ribosomal protein S9 PAM139 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 39938744 Common rplJ 50S ribosomal protein L10 PAM258 179 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 39939112 Common GRS1 glycyl-tRNA synthetase PAM626 92 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 39938630 Common spoU rRNA methylase PAM144 203 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 39938637 Common rbfA ribosome-binding factor A PAM151 110 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 39938791 Common alaS alanyl-tRNA synthetase PAM305 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938624 Common rplM 50S ribosomal protein L13 PAM138 215 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 39938903 Pathogen - hypothetical protein PAM417 2 None None None 39939225 Common acpP acyl carrier protein PAM739 198 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 39939115 Common - hypothetical protein PAM629 18 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 39938594 Pathogen - hypothetical protein PAM108 1 None None None 39939084 Common pheT phenylalanyl-tRNA synthetase beta subunit PAM598 232 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 39938756 Common - uncharacterized BCR PAM270 110 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 39939016 Pathogen - hypothetical protein PAM530 2 None None None 39938779 Common thyA thymidylate synthase PAM293 144 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 39938498 Common - exopolyphosphatase-related protein PAM012 174 COG3887 COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain Signal transduction mechanisms 39938554 Pathogen - hypothetical protein PAM068 2 None None None 39939059 Pathogen - hypothetical protein PAM573 2 None None None 39938818 Pathogen - hypothetical protein PAM332 2 None None None 39938646 Pathogen - hypothetical protein PAM160 2 None None None 39938546 Pathogen - hypothetical protein PAM060 1 None None None 39938850 Common ssb single-stranded DNA-binding protein PAM364 140 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39939239 Pathogen - hypothetical protein PAM753 1 None None None 39939095 Common - hypothetical protein PAM609 15 COG3935 DnaD, Putative primosome component and related proteins DNA replication, recombination, and repair 39939034 Pathogen - hypothetical protein PAM548 2 None None None 39938995 Pathogen - hypothetical protein PAM509 2 None None None 39939209 Common - hypothetical protein PAM723 36 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 39938941 Common argS arginyl-tRNA synthetase PAM455 166 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938717 Common holB DNA polymerase III, delta prime subunit PAM231 40 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 39938974 Common glnQ ABC-type polar amino acid transport system, ATPase component PAM488 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 39938733 Common rpmH 50S ribosomal protein L34 PAM247 187 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 39938767 Common pfkA 6-phosphofructokinase PAM281 148 COG0205 PfkA, 6-phosphofructokinase Carbohydrate transport and metabolism 39939050 Common ssb single-stranded DNA-binding protein PAM564 148 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938893 Pathogen - hypothetical protein PAM407 2 None None None 39939218 Common - regulatory protein SpoVG PAM732 24 COG2088 SpoVG, Uncharacterized protein, involved in the regulation of septum location Cell envelope biogenesis, outer membrane 39939110 Common - hypothetical protein PAM624 197 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 39938651 Common rpsB 30S ribosomal protein S2 PAM165 237 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 39938663 Pathogen - hypothetical protein PAM177 2 None None None 39938604 Pathogen - hypothetical protein PAM118 1 None None None 39939042 Pathogen - hypothetical protein PAM556 2 None None None 39938686 Common rplC ribosomal protein L3 PAM200 217 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 39939166 Pathogen gmk guanylate kinase PAM680 1 None None None 39938969 Pathogen - hypothetical protein PAM483 1 None None None 39939123 Common - hypothetical protein PAM637 150 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 39938865 Pathogen - hypothetical protein PAM379 2 None None None 39938760 Common - hypothetical protein PAM274 81 COG1692 COG1692, Uncharacterized protein conserved in bacteria Function unknown 39939220 Common norM Na+-driven multidrug efflux pump PAM734 69 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 39939064 Common - hypothetical protein PAM578 248 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938874 Common dnaB replicative DNA helicase PAM388 213 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39939177 Pathogen - hypothetical protein PAM691 2 None None None 39939079 Common - hypothetical protein PAM593 26 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 39938524 Pathogen - hypothetical protein PAM038 1 None None None 39938812 Common hflB ATP-dependent Zn protease PAM326 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39939020 Common himA bacterial nucleoid DNA-binding protein PAM534 8 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939170 Pathogen - hypothetical protein PAM684 2 None None None 39938674 Common - Zn-dependent carboxypeptidase PAM188 3 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 39938488 Common dnaN DNA polymerase III beta subunit PAM002 206 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 39938980 Common artM ABC-type amino acid transport system, permease component PAM494 18 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39938925 Common - uncharacterized BCR PAM439 34 COG1481 COG1481, Uncharacterized protein conserved in bacteria Function unknown 39938746 Common rpoB DNA-directed RNA polymerase subunit beta PAM260 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 39938573 Common - hypothetical protein PAM087 7 COG2868 COG2868, Predicted ribosomal protein Translation, ribosomal structure and biogenesis 39939196 Pathogen - hypothetical protein PAM710 1 None None None 39939036 Common dnaB replicative DNA helicase PAM550 212 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39939135 Pathogen - hypothetical protein PAM649 2 None None None 39939121 Pathogen - hypothetical protein PAM635 1 None None None 39938919 Common uvrC nuclease subunit of the excinuclease complex PAM433 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 39938615 Common mesJ hypothetical protein PAM129 178 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 39938805 Common ssb single-stranded DNA-binding protein PAM319 134 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938513 Common - hypothetical protein PAM027 4 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 39938926 Common acpS phosphopantetheinyl transferase PAM440 12 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 39938887 Pathogen - hypothetical protein PAM401 2 None None None 39939089 Common lpd fatty acid/phospholipid biosynthesis enzyme PAM603 242 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 39939082 Common pheS phenylalanyl-tRNA synthetase alpha subunit PAM596 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 39938798 Pathogen - hypothetical protein PAM312 2 None None None 39938680 Pathogen - hypothetical protein PAM194 3 None None None 39938987 Common - hypothetical protein PAM501 69 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 39938691 Common rplV 50S ribosomal protein L22 PAM205 217 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 39939056 Common dnaB replicative DNA helicase PAM570 212 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938841 Common uvrD ATP-dependent DNA helicase PAM355 98 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39939097 Common pyrG CTP synthetase PAM611 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 39938531 Pathogen - hypothetical protein PAM045 2 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 39938527 Common ssb single-stranded DNA-binding protein PAM041 129 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39939090 Pathogen - hypothetical protein PAM604 1 None None None 39938532 Pathogen - hypothetical protein PAM046 2 None None None 39938935 Common tig FKBP-type peptidyl-prolyl cis-trans isomerase PAM449 218 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 39939004 Pathogen - hypothetical protein PAM518 2 None None None 39938490 Pathogen - hypothetical protein PAM004 4 None None None 39938785 Common - N6-adenine-specific methylase PAM299 193 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 39938829 Pathogen - hypothetical protein PAM343 2 None None None 39938831 Common - hypothetical protein PAM345 11 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39938820 Common - hypothetical protein PAM334 9 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938506 Common cbiO ABC-type cobalt transport system, ATPase component PAM020 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 39938857 Pathogen - hypothetical protein PAM371 2 None None None 39938541 Common nrdF ribonucleotide-diphosphate reductase subunit beta PAM055 68 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 39938548 Pathogen - hypothetical protein PAM062 2 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938687 Common rplD 50S ribosomal protein L4 PAM201 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 39938569 Common serS seryl-tRNA synthetase PAM083 244 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938883 Common - hypothetical protein PAM397 36 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39939200 Common srmB superfamily II DNA and RNA helicase PAM714 240 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 39938723 Common truB pseudouridine synthase PAM237 241 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 39938655 Common cdsA CDP-diglyceride synthetase PAM169 89 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 39938946 Pathogen - hypothetical protein PAM460 2 COG5280 COG5280, Phage-related minor tail protein Function unknown 39939227 Pathogen - hypothetical protein PAM741 2 None None None 39938698 Common rplE 50S ribosomal protein L5 PAM212 248 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 39939172 Common dnaB replicative DNA helicase PAM686 210 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39939018 Common - hypothetical protein PAM532 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938909 Pathogen - hypothetical protein PAM423 1 None None None 39938774 Pathogen - hypothetical protein PAM288 2 None None None 39938596 Pathogen - hypothetical protein PAM110 1 None None None 39939132 Pathogen - hypothetical protein PAM646 2 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 39938715 Common truA tRNA pseudouridine synthase A PAM229 231 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 39938825 Pathogen - hypothetical protein PAM339 2 None None None 39938972 Pathogen - hypothetical protein PAM486 2 None None None 39939230 Common infC translation initiation factor IF3 PAM744 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 39938639 Common - hemolysin PAM153 219 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 39938872 Pathogen - hypothetical protein PAM386 2 None None None 39938997 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM511 22 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39938632 Common smpB SsrA-binding protein PAM146 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 39938751 Common tufB elongation factor Tu PAM265 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 39939141 Common ssb single-stranded DNA-binding protein PAM655 125 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938492 Pathogen - hypothetical protein PAM006 1 None None None 39939130 Common dnaG DNA primase PAM644 46 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39939027 Pathogen - hypothetical protein PAM541 2 None None None 39939074 Common artM ABC-type amino acid transport system, permease component PAM588 164 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39939066 Common folK 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase PAM580 194 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 39939057 Common - hypothetical protein PAM571 190 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39939040 Pathogen - hypothetical protein PAM554 2 None None None 39939101 Pathogen - uncharacterized BCR PAM615 2 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 39938895 Common dam site-specific DNA methylase PAM409 81 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39939049 Common himA bacterial nucleoid DNA-binding protein PAM563 153 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938967 Pathogen - hypothetical protein PAM481 1 None None None 39938867 Pathogen - hypothetical protein PAM381 2 None None None 39939216 Common - HD superfamily phosphohydrolase PAM730 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 39938769 Common pgi glucose-6-phosphate isomerase PAM283 183 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 39939228 Common rplT 50S ribosomal protein L20 PAM742 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 39938945 Common - hypothetical protein PAM459 4 None None None 39939154 Pathogen - hypothetical protein PAM668 1 None None None 39938665 Common cbiO ABC-type cobalt transport system, ATPase component PAM179 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 39939139 Common - hypothetical protein PAM653 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938661 Common gapA glyceraldehyde-3-phosphate dehydrogenase PAM175 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 39938602 Pathogen - hypothetical protein PAM116 1 None None None 39938735 Common yidC preprotein translocase subunit YidC PAM249 163 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 39939137 Common - hypothetical protein PAM651 10 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 39938783 Pathogen - hypothetical protein PAM297 2 None None None 39938534 Pathogen - hypothetical protein PAM048 2 None None None 39939046 Pathogen - hypothetical protein PAM560 2 None None None 39938515 Pathogen - hypothetical protein PAM029 1 None None None 39939168 Pathogen - hypothetical protein PAM682 2 None None None 39938613 Common hisS histidyl-tRNA synthetase PAM127 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938917 Pathogen - hypothetical protein PAM431 2 None None None 39938545 Common mdlB ABC-type multidrug/protein/lipid transport system, ATPase component PAM059 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 39938885 Pathogen - hypothetical protein PAM399 1 None None None 39938776 Common argE dipeptidase PepV PAM290 130 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 39939087 Common acoB thiamine pyrophosphate-dependent dehydrogenase, E1 component beta subunit PAM601 189 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 39938990 Pathogen - hypothetical protein PAM504 2 None None None 39938737 Common pnp polynucleotide phosphorylase/polyadenylase PAM251 233 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 39939199 Common hflB ATP-dependent Zn protease PAM713 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938807 Pathogen - hypothetical protein PAM321 1 None None None 39939161 Common polA DNA polymerase I PAM675 8 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 39938648 Pathogen - hypothetical protein PAM162 2 None None None 39938822 Pathogen - hypothetical protein PAM336 2 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938629 Common udk uridine kinase PAM143 93 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 39938814 Pathogen - hypothetical protein PAM328 2 None None None 39939080 Common asnB asparagine synthetase B PAM594 154 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 39938571 Common - hypothetical protein PAM085 124 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 39939233 Common trmE tRNA modification GTPase TrmE PAM747 218 COG0486 ThdF, Predicted GTPase General function prediction only 39938707 Common adk adenylate kinase PAM221 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 39939072 Common rpsD 30S ribosomal protein S4 PAM586 229 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 39939159 Common dnaB replication initiation/membrane attachment protein PAM673 16 COG3611 DnaB, Replication initiation/membrane attachment protein DNA replication, recombination, and repair 39938921 Common nfnB nitroreductase PAM435 74 COG0778 NfnB, Nitroreductase Energy production and conversion 39938741 Common nusG transcription antiterminator PAM255 215 COG0250 NusG, Transcription antiterminator Transcription 39938859 Common - hypothetical protein PAM373 3 None None None 39938849 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM363 19 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39939180 Pathogen - hypothetical protein PAM694 2 None None None 39939190 Common dnaK molecular chaperone DnaK PAM704 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 39938567 Common rpsT 30S ribosomal protein S20 PAM081 24 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 39938910 Pathogen - hypothetical protein PAM424 1 None None None 39939006 Common - hypothetical protein PAM520 8 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39938689 Common rplB 50S ribosomal protein L2 PAM203 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 39939029 Common - hypothetical protein PAM543 6 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39939037 Pathogen - hypothetical protein PAM551 2 None None None 39938587 Common - hypothetical protein PAM101 46 COG3481 COG3481, Predicted HD-superfamily hydrolase General function prediction only 39938928 Common sodA superoxide dismutase PAM442 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 39939022 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM536 16 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39938565 Common glnQ ABC-type polar amino acid transport system, ATPase component PAM079 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 39939148 Common potD spermidine/putrescine-binding periplasmic protein PAM662 119 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 39938982 Pathogen - hypothetical protein PAM496 1 None None None 39938796 Pathogen - hypothetical protein PAM310 1 None None None 39939099 Common pssA phosphatidylserine synthase PAM613 36 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 39938529 Common himA bacterial nucleoid DNA-binding protein PAM043 160 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939207 Common sfcA malic enzyme PAM721 202 COG0281 SfcA, Malic enzyme Energy production and conversion 39938955 Common tyrS tyrosyl-tRNA synthetase PAM469 216 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938989 Pathogen - hypothetical protein PAM503 2 None None None 39938847 Pathogen - hypothetical protein PAM361 1 None None None 39938896 Common ssb single-stranded DNA-binding protein PAM410 119 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938999 Common himA bacterial nucleoid DNA-binding protein PAM513 4 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938536 Pathogen - hypothetical protein PAM050 2 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39938641 Common - hypothetical protein PAM155 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938838 Pathogen - hypothetical protein PAM352 2 None None None 39938839 Pathogen - hypothetical protein PAM353 2 COG5280 COG5280, Phage-related minor tail protein Function unknown 39938916 Common tmk thymidylate kinase PAM430 203 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939001 Pathogen - hypothetical protein PAM515 2 None None None 39938542 Pathogen - hypothetical protein PAM056 1 None None None 39938551 Pathogen - hypothetical protein PAM065 1 None None None 39938649 Common ung uracil-DNA glycosylase PAM163 130 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 39938781 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase PAM295 44 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 39939021 Common ssb single-stranded DNA-binding protein PAM535 160 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938535 Pathogen - hypothetical protein PAM049 2 None None None 39939169 Common tra5 putative transposase PAM683 111 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938702 Common rplR 50S ribosomal protein L18 PAM216 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 39938929 Common nusB transcription termination factor PAM443 72 COG0781 NusB, Transcription termination factor Transcription 39938722 Common trxA thioredoxin PAM236 26 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 39938738 Common mgtA cation transport ATPase PAM252 244 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 39939193 Common - hypothetical protein PAM707 4 None None None 39938671 Pathogen - uncharacterized BCR PAM185 2 COG1284 COG1284, Uncharacterized conserved protein Function unknown 39939174 Common tmk thymidylate kinase PAM688 184 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939076 Pathogen - hypothetical protein PAM590 1 None None None 39938566 Common - hypothetical protein PAM080 2 None None None 39938509 Common - hypothetical protein PAM023 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 39939162 Common exo 5'-3' exonuclease PAM676 217 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 39939144 Common hflB ATP-dependent Zn protease PAM658 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938900 Pathogen - hypothetical protein PAM414 2 None None None 39938878 Pathogen - hypothetical protein PAM392 2 None None None 39938511 Common dppD ABC-type dipeptide/oligopeptide transport system, ATPase component PAM025 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 39938950 Common artM ABC-type amino acid transport system, permease component PAM464 42 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39939204 Common - phosphatidylglycerophosphate synthase PAM718 203 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 39939158 Common dnaC DNA replication protein PAM672 31 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 39938642 Pathogen - hypothetical protein PAM156 1 None None None 39938748 Common rpsL 30S ribosomal protein S12 PAM262 245 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 39938795 Common lplA lipoate-protein ligase A PAM309 75 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 39938503 Common - GTPase EngB PAM017 184 COG0218 COG0218, Predicted GTPase General function prediction only 39938907 Common ssb single-stranded DNA-binding protein PAM421 22 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39939213 Common hflB ATP-dependent Zn protease PAM727 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938855 Pathogen - hypothetical protein PAM369 2 None None None 39938889 Common hflB ATP-dependent Zn protease PAM403 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938537 Common - hypothetical protein PAM051 130 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39939024 Pathogen - hypothetical protein PAM538 2 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 39939085 Common phnL ABC transporter, ATPase component PAM599 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 39938763 Pathogen - hypothetical protein PAM277 2 None None None 39938936 Common uvrA excinuclease ATPase subunit PAM450 244 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 39938800 Pathogen - hypothetical protein PAM314 4 None None None 39938915 Pathogen malK ABC-type sugar transport systems, ATPase components PAM429 2 None None None 39938564 Common - ABC-type amino acid transport system, permease component PAM078 162 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39939047 Common hflB ATP-dependent Zn protease PAM561 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938517 Pathogen - hypothetical protein PAM031 2 None None None 39939194 Pathogen - hypothetical protein PAM708 1 None None None 39938983 Pathogen - hypothetical protein PAM497 1 None None None 39939107 Common uvrD ATP-dependent DNA helicase PAM621 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938578 Common znuA ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding protein PAM092 118 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 39939039 Pathogen - hypothetical protein PAM553 2 None None None 39938869 Pathogen - hypothetical protein PAM383 1 None None None 39938609 Common - hypothetical protein PAM123 124 COG0388 COG0388, Predicted amidohydrolase General function prediction only 39938970 Pathogen - hypothetical protein PAM484 2 None None None 39939091 Common tatD Mg-dependent DNase PAM605 237 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 39938891 Pathogen - hypothetical protein PAM405 1 None None None 39939100 Pathogen - hypothetical protein PAM614 2 None None None 39938953 Common iscU nifU homolog PAM467 119 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 39939105 Common hsdM type I restriction-modification system methyltransferase subunit PAM619 59 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 39939053 Common tra5 putative transposase PAM567 129 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938898 Pathogen - hypothetical protein PAM412 1 None None None 39938659 Pathogen - hypothetical protein PAM173 1 None None None 39939113 Common dnaG DNA primase PAM627 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938942 Common artM ABC-type amino acid transport system, permease component PAM456 171 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39938964 Pathogen - hypothetical protein PAM478 1 None None None 39939068 Pathogen - hypothetical protein PAM582 2 None None None 39938860 Common tmk thymidylate kinase PAM374 43 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39938870 Pathogen - hypothetical protein PAM384 2 None None None 39939149 Pathogen - hypothetical protein PAM663 2 None None None 39939186 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM700 16 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39938758 Common - hypothetical protein PAM272 76 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 39938788 Common greA transcription elongation factor PAM302 198 COG0782 GreA, Transcription elongation factor Transcription 39938720 Common - hypothetical protein PAM234 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938778 Common argE acetylornithine deacetylase PAM292 30 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 39939117 Common - ribonuclease HII Family 2 PAM631 33 COG1039 RnhC, Ribonuclease HIII DNA replication, recombination, and repair 39938834 Common smc chromosome segregation ATPase homolog PAM348 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 39938669 Common - translation-associated GTPase PAM183 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 39938621 Common - hypothetical protein PAM135 20 COG3870 COG3870, Uncharacterized protein conserved in bacteria Function unknown 39938718 Common - hypothetical protein PAM232 209 COG0313 COG0313, Predicted methyltransferases General function prediction only 39939183 Pathogen - hypothetical protein PAM697 2 None None None 39938634 Common nusA transcription elongation factor NusA PAM148 217 COG0195 NusA, Transcription elongation factor Transcription 39939030 Common - hypothetical protein PAM544 4 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939070 Common - uncharacterized ACR PAM584 68 COG1624 COG1624, Uncharacterized conserved protein Function unknown 39938556 Pathogen - hypothetical protein PAM070 2 None None None 39938979 Pathogen - hypothetical protein PAM493 2 None None None 39939131 Common dnaB replicative DNA helicase PAM645 213 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938590 Common tdk thymidine kinase PAM104 94 COG1435 Tdk, Thymidine kinase Nucleotide transport and metabolism 39939129 Pathogen - hypothetical protein PAM643 2 None None None 39938628 Common rplM ribosomal protein L13 PAM142 53 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 39938713 Common rpoA DNA-directed RNA polymerase alpha subunit PAM227 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 39939235 Common ugpB sugar-binding periplasmic protein PAM749 15 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 39939044 Pathogen - hypothetical protein PAM558 4 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 39938597 Pathogen - hypothetical protein PAM111 1 None None None 39939011 Pathogen - hypothetical protein PAM525 2 None None None 39938827 Common - hypothetical protein PAM341 21 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938938 Pathogen - hypothetical protein PAM452 1 None None None 39938695 Common rpsQ 30S ribosomal protein S17 PAM209 227 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 39938552 Pathogen - hypothetical protein PAM066 2 None None None 39938809 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM323 19 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39939078 Pathogen - hypothetical protein PAM592 3 None None None 39938522 Pathogen - hypothetical protein PAM036 1 None None None 39938961 Pathogen - hypothetical protein PAM475 1 None None None 39938832 Pathogen - hypothetical protein PAM346 2 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 39939146 Common potB ABC-type spermidine/putrescine transport system, permease component I PAM660 176 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 39938968 Pathogen - hypothetical protein PAM482 1 None None None 39938948 Pathogen - hypothetical protein PAM462 2 None None None 39939125 Common artM ABC-type amino acid transport system, permease component PAM639 169 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 161611247 Common glnS glutaminyl-tRNA synthetase PAM620 245 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 39938539 Pathogen - hypothetical protein PAM053 2 None None None 39938709 Common infA translation initiation factor IF-1 PAM223 212 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 39939093 Common plsX fatty acid/phospholipid synthesis protein PAM607 176 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 39939202 Common - hypothetical protein PAM716 214 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 39938985 Common gyrA DNA gyrase alpha subunit PAM499 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 39938580 Common znuB ABC-type Mn/Zn transport system, permease component PAM094 190 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 39939052 Pathogen - hypothetical protein PAM566 2 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39938892 Common tra5 putative transposase PAM406 38 None None None 39938497 Common rpsR 30S ribosomal protein S18 PAM011 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 39938842 Common hflB ATP-dependent Zn protease PAM356 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938731 Common pepP xaa-Pro aminopeptidase PAM245 199 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 39938561 Common - hypothetical protein PAM075 5 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938562 Pathogen - hypothetical protein PAM076 2 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 39938845 Common ssb single-stranded DNA-binding protein PAM359 134 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938931 Common lepA GTP-binding protein LepA PAM445 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 39938837 Pathogen - hypothetical protein PAM351 2 None None None 39938678 Common dppD ABC-type dipeptide/oligopeptide transport system, ATPase component PAM192 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 39938684 Pathogen rpmF 50S ribosomal protein L32 PAM198 2 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 39938585 Pathogen - hypothetical protein PAM099 1 None None None 39939236 Common ugpE sugar permease PAM750 145 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 39938618 Common abc uncharacterized ABC-type transport system ATPase component PAM132 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 39939164 Common ffh signal recognition particle GTPase PAM678 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 39939026 Pathogen - hypothetical protein PAM540 2 None None None 39938992 Pathogen - hypothetical protein PAM506 4 None None None 39938765 Common topA topoisomerase IA PAM279 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 39938771 Common gpmI phosphoglyceromutase PAM285 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 39938802 Common hflB ATP-dependent Zn protease PAM316 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938913 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM427 28 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39939083 Common - hypothetical protein PAM597 196 COG0073 ARC1, EMAP domain General function prediction only 39938786 Common - hypothetical protein PAM300 42 COG1713 COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism Coenzyme metabolism 39938821 Pathogen - hypothetical protein PAM335 2 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938500 Common prfA protein chain release factor A PAM014 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 39938876 Common - hypothetical protein PAM390 13 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39938626 Common glnS glutamyl- and glutaminyl-tRNA synthetase PAM140 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 39939156 Pathogen - hypothetical protein PAM670 1 None None None 39938700 Common rpsH 30S ribosomal protein S8 PAM214 247 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 39938923 Pathogen - hypothetical protein PAM437 2 COG0344 COG0344, Predicted membrane protein Function unknown 39938811 Pathogen himA bacterial nucleoid DNA-binding protein PAM325 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938505 Common - hypothetical protein PAM019 13 COG4720 COG4720, Predicted membrane protein Function unknown 39939211 Common - hypothetical protein PAM725 128 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39939111 Common era GTP-binding protein Era PAM625 227 COG1159 Era, GTPase General function prediction only 39938862 Pathogen - hypothetical protein PAM376 2 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938962 Common mutT MutT/nudix family protein PAM476 41 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 39939133 Common - hypothetical protein PAM647 13 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39938880 Common himA bacterial nucleoid DNA-binding protein PAM394 160 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39939222 Pathogen rpoZ DNA-directed RNA polymerase subunit K/omega PAM736 2 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 39939032 Pathogen - hypothetical protein PAM546 2 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938600 Pathogen - hypothetical protein PAM114 1 None None None 39938611 Common trmU tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase PAM125 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 39938650 Common dut dUTPase PAM164 173 COG0756 Dut, dUTPase Nucleotide transport and metabolism 39938653 Common pyrH uridylate kinase PAM167 232 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 39938605 Pathogen - hypothetical protein PAM119 2 None None None 39939033 Common tra5 putative transposase PAM547 128 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938727 Common gpsA glycerol 3-phosphate dehydrogenase PAM241 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 39938576 Pathogen gepA uncharacterized phage-associated protein PAM090 1 COG3600 GepA, Uncharacterized phage-associated protein Function unknown 39938607 Common groEL chaperonin GroEL PAM121 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 39938932 Pathogen - hypothetical protein PAM446 1 None None None 39938959 Common prfB protein chain release factor B PAM473 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 39938519 Pathogen - hypothetical protein PAM033 1 None None None 39939103 Common dnaX DNA polymerase III, gamma/tau subunit PAM617 247 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 39939219 Common zntA cation transport ATPase PAM733 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 39938753 Common gidB S-adenosylmethionine-dependent methyltransferase PAM267 194 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 39939176 Pathogen - hypothetical protein PAM690 2 None None None 39938592 Common rpmB 50S ribosomal protein L28 PAM106 38 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 39938977 Pathogen - hypothetical protein PAM491 1 None None None 39939061 Pathogen - hypothetical protein PAM575 2 None None None 39939127 Common mdoB amino acid transporter, amino acid-binding protein PAM641 11 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 39938816 Pathogen - hypothetical protein PAM330 2 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938599 Pathogen - hypothetical protein PAM113 1 None None None 39938644 Common - hemolysin III homolog PAM158 111 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 39938711 Common rpsM 30S ribosomal protein S13 PAM225 242 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 39938583 Common nlpA ABC-type uncharacterized transport system, periplasmic component PAM097 5 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 39938793 Common hflB ATP-dependent Zn protease PAM307 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938636 Common infB translation initiation factor IF-2 PAM150 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 39939188 Common rpoD DNA-directed RNA polymerase sigma subunit PAM702 13 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39939003 Pathogen - hypothetical protein PAM517 2 None None None 39938558 Common - hypothetical protein PAM072 47 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939012 Common - hypothetical protein PAM526 7 None None None 39939185 Common ssb single-stranded DNA-binding protein PAM699 160 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39938810 Common ssb single-stranded DNA-binding protein PAM324 140 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39939197 Pathogen - hypothetical protein PAM711 1 None None None 39938924 Common lig NAD-dependent DNA ligase PAM438 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 39938690 Common rpsS 30S ribosomal protein S19 PAM204 225 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 39938745 Common rplL 50S ribosomal protein L7/L12 PAM259 214 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 39939240 Common asnC asparaginyl-tRNA synthetase PAM754 196 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 39938813 Pathogen - hypothetical protein PAM327 2 None None None 39939069 Common degV uncharacterized BCR PAM583 49 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 39939081 Pathogen - hypothetical protein PAM595 2 None None None 39938884 Common - hypothetical protein PAM398 31 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39938823 Common tra5 putative transposase PAM337 128 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 39938706 Common secY preprotein translocase subunit SecY PAM220 228 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 39939198 Pathogen - hypothetical protein PAM712 1 None None None 39939035 Common dnaG DNA primase PAM549 166 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39939223 Common gmk guanylate kinase PAM737 213 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 39938489 Pathogen - hypothetical protein PAM003 3 None None None 39938616 Common hflB ATP-dependent Zn protease PAM130 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39939147 Common potC ABC-type spermidine/putrescine transport system, permease component II PAM661 192 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 39938530 Common - hypothetical protein PAM044 249 COG1222 RPT1, ATP-dependent 26S proteasome regulatory subunit Posttranslational modification, protein turnover, chaperones 39938560 Common dnaB replicative DNA helicase PAM074 212 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39938840 Pathogen - hypothetical protein PAM354 4 None None None 39939028 Pathogen - hypothetical protein PAM542 2 None None None 39938526 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM040 23 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39938986 Common - hypothetical protein PAM500 84 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 39938804 Common - hypothetical protein PAM318 74 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39938882 Common ssb single-stranded DNA-binding protein PAM396 129 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 39939098 Common psd phosphatidylserine decarboxylase PAM612 89 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 39938586 Common iscU nifU-like protein PAM100 59 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 39939140 Common himA bacterial nucleoid DNA-binding protein PAM654 3 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938726 Common engA GTP-binding protein EngA PAM240 226 COG1160 COG1160, Predicted GTPases General function prediction only 39938957 Common trmD tRNA-(guanine-N1)-methyltransferase PAM471 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 39938697 Common rplX ribosomal protein L24 PAM211 101 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 39938675 Common dppC ABC-type dipeptide/oligopeptide system, permease component PAM189 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 39938714 Common rplQ 50S ribosomal protein L17 PAM228 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 39938656 Common tpiA triosephosphate isomerase PAM170 219 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 39938784 Common - uncharacterized BCR PAM298 7 COG3763 COG3763, Uncharacterized protein conserved in bacteria Function unknown 39938828 Common - retron-type reverse transcriptase PAM342 89 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 39938904 Pathogen - hypothetical protein PAM418 2 None None None 39939005 Pathogen - hypothetical protein PAM519 1 None None None 39938540 Common nrdA ribonucleotide reductase alpha subunit PAM054 197 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 161611249 Common rplU 50S ribosomal protein L21 PAM086 192 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 39938856 Pathogen - hypothetical protein PAM370 2 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938830 Common tmk thymidylate kinase PAM344 217 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939208 Common - hypothetical protein PAM722 7 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938902 Pathogen - hypothetical protein PAM416 2 None None None 39938877 Common - hypothetical protein PAM391 6 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 39939226 Common frvX endo-1,4-beta-glucanase homolog PAM740 89 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 39939231 Common thrS threonyl-tRNA synthetase PAM745 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938491 Common pgpB membrane-associated phospholipid phosphatase PAM005 2 None None None 39939116 Common hit diadenosine tetraphosphate hydrolase PAM630 227 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 39938525 Pathogen - hypothetical protein PAM039 1 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 39938940 Common nfo endonuclease IV PAM454 105 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 39938623 Common - hypothetical protein PAM137 109 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 39938851 Pathogen himA bacterial nucleoid DNA-binding protein PAM365 2 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 39938994 Pathogen - hypothetical protein PAM508 2 COG5280 COG5280, Phage-related minor tail protein Function unknown 39939126 Common - hypothetical protein PAM640 5 None None None 39939238 Common malK ABC-type sugar transport system, ATPase component PAM752 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 39938547 Pathogen - hypothetical protein PAM061 1 None None None 39938949 Pathogen - hypothetical protein PAM463 1 None None None 39938773 Common pykF pyruvate kinase PAM287 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 39938716 Common tmk thymidylate kinase PAM230 231 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939201 Common - hypothetical protein PAM715 197 None None None 39938553 Common - hypothetical protein PAM067 8 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 39938660 Common pgk phosphoglycerate kinase PAM174 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 39938499 Common dnaB replicative DNA helicase PAM013 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 39939017 Pathogen - hypothetical protein PAM531 2 None None None 39938664 Common - oligoendopeptidase F PAM178 64 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 39938603 Common hflB ATP-dependent Zn protease PAM117 249 COG1222 RPT1, ATP-dependent 26S proteasome regulatory subunit Posttranslational modification, protein turnover, chaperones 39939104 Common hsdR restriction enzyme type I helicase subunit PAM618 62 COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 39938729 Pathogen - hypothetical protein PAM243 2 None None None 39938701 Common rplF 50S ribosomal protein L6 PAM215 240 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 39939136 Pathogen - hypothetical protein PAM650 2 None None None 39938574 Common rpmA 50S ribosomal protein L27 PAM088 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 39938766 Common norM Na+-driven multidrug efflux pump PAM280 7 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 39939217 Common ksgA dimethyladenosine transferase PAM731 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 39938507 Pathogen - hypothetical protein PAM021 1 None None None 39939058 Common dnaG DNA primase PAM572 126 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938894 Common rpoD DNA-directed RNA polymerase sigma subunit PAM408 3 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 161611250 Common rpsF 30S ribosomal protein S6 PAM009 85 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 39939014 Pathogen - hypothetical protein PAM528 4 None None None 39939178 Common - hypothetical protein PAM692 62 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 39938734 Common rnpA ribonuclease P PAM248 12 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 39938864 Pathogen - hypothetical protein PAM378 2 None None None 39939041 Pathogen - hypothetical protein PAM555 2 None None None 39938652 Common tsf elongation factor Ts PAM166 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 39938755 Pathogen - hypothetical protein PAM269 2 None None None 39939063 Pathogen - hypothetical protein PAM577 2 None None None 39939151 Common - hypothetical protein PAM665 50 COG1461 COG1461, Predicted kinase related to dihydroxyacetone kinase General function prediction only 39938724 Common rsuA 16S rRNA pseudouridylate synthase PAM238 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 39938927 Common hcaD uncharacterized NAD-dependent dehydrogenase PAM441 244 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 39938736 Common - hypothetical protein PAM250 7 None None None 39939008 Pathogen - hypothetical protein PAM522 2 None None None 39938775 Common - hypothetical protein PAM289 4 None None None 39939160 Common nei formamidopyrimidine-DNA glycosylase PAM674 181 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 39939120 Common - hypothetical protein PAM634 51 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 39938544 Common mscL large-conductance mechanosensitive channel PAM058 142 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 39939221 Common - hypothetical protein PAM735 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 39938570 Pathogen - hypothetical protein PAM084 2 None None None 39938601 Pathogen - hypothetical protein PAM115 1 None None None 39938853 Pathogen - hypothetical protein PAM367 2 None None None 39938673 Common - Zn-dependent carboxypeptidase PAM187 82 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 39938614 Common aspS aspartyl-tRNA synthetase PAM128 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 39938761 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase PAM275 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 39938512 Common oppF ABC-type dipeptide/oligopeptide transport system, ATPase component PAM026 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 39938981 Common artI ABC-type amino acid transport system, periplasmic component PAM495 11 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 39938858 Pathogen - hypothetical protein PAM372 2 None None None 39938647 Pathogen - hypothetical protein PAM161 2 None None None 39938740 Pathogen secE preprotein translocase subunit SecE PAM254 2 None None None 39939007 Common tmk thymidylate kinase PAM521 86 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 39939071 Common mgtA cation transport ATPase PAM585 232 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 39938633 Common - hypothetical protein PAM147 18 None None None 39938579 Common znuC ABC-type Mn/Zn transport system, ATPase component PAM093 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 39938747 Common rpoC DNA-directed RNA polymerase beta' subunit PAM261 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 39938797 Pathogen - hypothetical protein PAM311 2 None None None 39938806 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM320 20 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39938815 Pathogen - hypothetical protein PAM329 2 None None None 39938996 Pathogen - hypothetical protein PAM510 2 None None None 39938790 Common - Hollyday junction resolvase PAM304 119 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 39938704 Common rpmD 50S ribosomal protein L30 PAM218 57 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 39939142 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM656 13 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39938712 Common rpsK 30S ribosomal protein S11 PAM226 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 39939055 Common dnaG DNA primase PAM569 170 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39938699 Common rpsN 30S ribosomal protein S14 PAM213 209 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 39939191 Common grpE molecular chaperone GrpE PAM705 134 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 39938657 Common cof hypothetical protein PAM171 33 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 39938911 Pathogen - hypothetical protein PAM425 1 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 39938688 Common rplW 50S ribosomal protein L23 PAM202 215 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 39938934 Common lon ATP-dependent Lon protease PAM448 206 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 39938521 Pathogen - hypothetical protein PAM035 1 None None None 39938975 Common artI ABC-type amino acid transport system, periplasmic component PAM489 78 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 39938681 Pathogen - hypothetical protein PAM195 1 None None None 39938920 Common pdxK pyridoxal/pyridoxine/pyridoxamine kinase PAM434 84 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 39938918 Common uvrB excinuclease ABC subunit B PAM432 225 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 39938848 Pathogen - hypothetical protein PAM362 1 None None None 39938528 Common dam site-specific DNA methylase PAM042 54 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 39938988 Pathogen - hypothetical protein PAM502 2 None None None 39938954 Common csdB selenocysteine lyase PAM468 238 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 39938846 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM360 20 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 39938991 Common uvrD ATP-dependent DNA helicase PAM505 95 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 39938588 Common pcnB tRNA nucleotidyltransferase/polyA polymerase PAM102 211 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 39938640 Common priA primosomal protein N' PAM154 210 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 39938533 Common - hypothetical protein PAM047 14 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 39938568 Pathogen - hypothetical protein PAM082 1 None None None 39938692 Common rpsC 30S ribosomal protein S3 PAM206 246 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 39939171 Common dnaG DNA primase PAM685 147 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 39939167 Common - hypothetical protein PAM681 13 None None None 39938875 Pathogen - hypothetical protein PAM389 2 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 39938947 Pathogen - hypothetical protein PAM461 2 None None None 39938973 Common artM ABC-type amino acid transport system, permease component PAM487 143 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 39938757 Pathogen - hypothetical protein PAM271 2 None None None 39938901 Pathogen - hypothetical protein PAM415 2 COG5280 COG5280, Phage-related minor tail protein Function unknown 39938595 Pathogen - hypothetical protein PAM109 1 None None None 39939124 Pathogen - hypothetical protein PAM638 1 None None None 39939206 Common citS malate/citrate symporter PAM720 30 COG3493 CitS, Na+/citrate symporter Energy production and conversion 39939048 Pathogen - hypothetical protein PAM562 2 None None None 39938667 Common glyA glycine hydroxymethyltransferase PAM181 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 39939173 Pathogen - hypothetical protein PAM687 2 None None None 39939181 Common hflB ATP-dependent Zn protease PAM695 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 39938493 Common folC folylpolyglutamate synthase PAM007 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 39938908 Common fliA DNA-directed RNA polymerase specialized sigma subunit PAM422 8 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 39938631 Common ppa inorganic pyrophosphatase PAM145 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 39938866 Pathogen smc chromosome segregation ATPase homolog PAM380 2 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 39938750 Common fusA elongation factor G PAM264 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 39938721 Common - hypothetical protein PAM235 69 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 39938638 Common pth peptidyl-tRNA hydrolase PAM152 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 39938672 Common mgtA cation transport ATPase PAM186 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 39939118 Common - hypothetical protein PAM632 12 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 39939073 Pathogen - hypothetical protein PAM587 1 None None None 39939122 Common degV uncharacterized BCR PAM636 52 COG1307 DegV, Uncharacterized protein conserved in bacteria Function unknown 39939229 Pathogen rpmI ribosomal protein L35 PAM743 2 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 39939138 Pathogen - hypothetical protein PAM652 2 None None None 39938693 Common rplP 50S ribosomal protein L16 PAM207 219 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 39939065 Common QRI7 glycoprotein endopeptidase PAM579 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 39938487 Common dnaA chromosomal replication initiator protein PAM001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 39938555 Pathogen - hypothetical protein PAM069 2 None None None 39938944 Pathogen - hypothetical protein PAM458 2 None None None 39938662 Pathogen - hypothetical protein PAM176 2 None None None 39939102 Pathogen - hypothetical protein PAM616 2 None None None 39938666 Common cbiQ ABC-type cobalt transport system, permease component PAM180 39 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 39939153 Common clpX ATP-dependent protease Clp, ATPase subunit PAM667 5 COG0529 CysC, Adenylylsulfate kinase and related kinases Inorganic ion transport and metabolism 39938768 Common - hypothetical protein PAM282 4 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 39938966 Pathogen hflB ATP-dependent Zn protease PAM480 2 COG1223 COG1223, Predicted ATPase (AAA+ superfamily) General function prediction only 39939215 Common - hypothetical protein PAM729 36 COG4869 PduL, Propanediol utilization protein Secondary metabolites biosynthesis, transport, and catabolism 39938937 Pathogen - hypothetical protein PAM451 1 None None None 39938510 Common - hypothetical protein PAM024 95 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 39939019 Pathogen - hypothetical protein PAM533 2 None None None 39939109 Common rpsU 30S ribosomal protein S21 PAM623 77 None None None