Cupriavidus necator megaplasmid pHG1, complete sequence NC_005241 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 38637701 Common - putative integrase/recombinase PHG036 185 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38638009 Common pilQ putative traffic warden ATPase PHG348 215 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 38638004 Common pilV putative adhesin precursor PHG343 11 None None None 38637977 Nonpathogen - hypothetical protein PHG316 1 None None None 38638072 Common tnpA truncated transposase PHG411 53 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 38638079 Common cbbGp glyceraldehyde-3-phosphate dehydrogenase PHG418 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 38637812 Common - hypothetical protein PHG148 6 None None None 38637919 Common - putative 2-nitropropane dioxygenase PHG258 86 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 38637939 Common - putative sensor kinase PHG278 95 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 38637766 Common - transposase PHG101 61 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637732 Common - hypothetical protein PHG067 7 None None None 38637687 Common hoxA HoxA PHG019 209 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 38638085 Common cbbYp CbbY PHG424 115 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 38638016 Common trbN putative lytic transglycosylase PHG355 43 None None None 38637956 Common - hypothetical protein PHG295 2 None None None 38638031 Common - hypothetical protein PHG370 2 None None None 38637796 Nonpathogen - hypothetical protein PHG131 1 None None None 38637699 Nonpathogen - putativa integrase/recombinase PHG034 13 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 38637925 Common - hypothetical protein PHG264 15 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 38637970 Common - hypothetical protein PHG309 2 None None None 38637930 Common narK2 putative nitrite/nitrate transporter PHG269 87 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 38637755 Common hoxY NAD-reducing hydrogenase hydrogenase moiety small subunit PHG090 50 COG1941 FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit Energy production and conversion 38637770 Common kfrA1 putative KfrA protein PHG105 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 38637680 Common hypA1 HypA1 PHG012 83 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 38637783 Common - putative methyltransferase PHG118 4 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 38637995 Common pri putative primase PHG334 19 COG4643 COG4643, Uncharacterized protein conserved in bacteria Function unknown 38637804 Common - putative integrase/recombinase PHG140 128 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637723 Common - putative integrase/recombinase PHG058 223 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637779 Common - hypothetical protein PHG114 17 COG5588 COG5588, Uncharacterized conserved protein Function unknown 38637905 Common norB nitric oxide reductase qNor type PHG244 72 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 38637964 Common - hypothetical protein PHG303 2 None None None 38637698 Common - putative transposase PHG033 24 None None None 38637948 Common - histone-like protein PHG287 15 None None None 38637855 Common - hypothetical protein PHG191 3 None None None 38638060 Common fadD1 acyl-CoA synthetase PHG399 219 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 38638021 Common trbC putative prepilin PHG360 2 None None None 38638055 Common catB2 putative muconate cycloisomerase PHG394 133 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 38637815 Nonpathogen - hypothetical protein PHG151 6 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 38637825 Common - hypothetical protein PHG161 3 None None None 38637989 Common hupB putative histone-like protein PHG328 204 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 38637888 Nonpathogen - hypothetical protein PHG224 1 None None None 38637821 Common - hypothetical protein PHG157 2 COG2916 Hns, DNA-binding protein H-NS General function prediction only 38638010 Common pilO putative component of type II secretion apparatus PHG349 3 None None None 38637980 Nonpathogen - hypothetical protein PHG319 1 None None None 38638066 Common catB1 putative muconate cycloisomerase PHG405 131 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 38637873 Common napE periplasmic nitrate reductase accessory protein PHG209 14 COG4459 NapE, Periplasmic nitrate reductase system, NapE component Energy production and conversion 38637884 Common ccmL cytochrome C-type biogenesis protein PHG220 90 COG3088 CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes Posttranslational modification, protein turnover, chaperones 38637781 Common kup putative potassium uptake protein PHG116 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 38637758 Common hoxI HoxI PHG093 18 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 38637692 Common - fructose-1,6-bisphosphate PHG027 97 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 38637672 Nonpathogen - hypothetical protein PHG004 2 None None None 38637735 Common - putative [NiFe] hydrogenase-specific C-terminal protease PHG070 47 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 38637979 Nonpathogen - hypothetical protein PHG318 1 None None None 38637857 Common - hypothetical protein PHG193 20 COG5642 COG5642, Uncharacterized conserved protein Function unknown 38638077 Common cbbAp fructose-1,6-bisphosphate aldolase PHG416 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 38637743 Common hypB3 HypB3 PHG078 124 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 38638070 Common tniQ putative TniQ-like transposition protein PHG409 2 None None None 38637729 Common - putative [NiFe] hydrogenase small subunit PHG064 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 38637718 Common - hypothetical protein PHG053 9 None None None 38637944 Common - hypothetical protein PHG283 29 COG2944 COG2944, Predicted transcriptional regulator Transcription 38637739 Common gmhA putative sedoheptulose 7-phosphate isomerase PHG074 123 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 38637730 Common - putative [NiFe] hydrogenase large subunit PHG065 85 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 38637785 Common - putative aldolase PHG120 74 COG3836 HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Carbohydrate transport and metabolism 38637972 Common - hypothetical protein PHG311 7 None None None 38638033 Common repA putative replication protein PHG372 4 COG3355 COG3355, Predicted transcriptional regulator Transcription 38637927 Common narL nitrate/nitrite response regulator PHG266 219 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 38638025 Common trbL putative entry exclusion protein PHG364 4 COG3704 VirB6, Type IV secretory pathway, VirB6 components Intracellular trafficking and secretion 38637853 Common - putative phage-type integrase PHG189 6 None None None 38638002 Nonpathogen - hypothetical protein PHG341 2 None None None 38637969 Common - hypothetical protein PHG308 11 None None None 38637954 Nonpathogen - hypothetical protein PHG293 1 None None None 38638008 Common pilR putative component of type II secretion apparatus PHG347 12 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 38637682 Common hypF1 HypF1 PHG014 108 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38637689 Common hoxC regulatory [NiFe] hydrogenase large subunit PHG021 99 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 38637900 Common - hypothetical protein PHG236 15 None None None 38637777 Common - putative transposase PHG112 6 None None None 38638014 Common pilT putative transglycosylase PHG353 32 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 38637707 Common - Orf2/integrase/recombinase fusion protein PHG042 178 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637677 Common hoxR putative rubredoxin PHG009 85 COG1773 COG1773, Rubredoxin Energy production and conversion 38637991 Common - hypothetical protein PHG330 15 None None None 38637962 Nonpathogen - hypothetical protein PHG301 1 None None None 38638080 Common cbbZp phosphoglycolate phosphatase PHG419 157 COG0546 Gph, Predicted phosphatases General function prediction only 38637914 Common nosC putative cytochrome c-type protein PHG253 43 COG3245 CycB, Cytochrome c5 Energy production and conversion 38638087 Common cbbSp ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit PHG426 29 COG4451 RbcS, Ribulose bisphosphate carboxylase small subunit Energy production and conversion 38637670 Common hoxG membrane-bound [NiFe] hydrogenase large subunit PHG002 107 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 38637748 Common - putative integrase/recombinase PHG083 41 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637798 Nonpathogen - putative integrase/recombinase PHG133 12 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637892 Common - hypothetical protein PHG228 150 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 38637886 Common - probable acyl-coa dehydrogenase PHG222 146 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 38637987 Common - hypothetical protein PHG326 2 None None None 38638064 Common nagM1 putative NagM-like protein PHG403 76 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 38637751 Common - putative transposase PHG086 28 None None None 38637882 Common ccmF cytochrome C-type biogenesis protein PHG218 137 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 38637879 Common ccmB ABC heme export system PHG215 58 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 38638038 Common - hypothetical protein PHG377 8 None None None 38637733 Common - hypothetical protein PHG068 7 None None None 38637808 Common - hypothetical protein PHG144 51 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637745 Common - hypothetical protein PHG080 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 38637694 Common - putative transposase PHG029 13 None None None 38638053 Common nagM4 putative NagM-like protein PHG392 68 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 38638023 Common trbE putative TrbE-like protein PHG362 56 COG3451 VirB4, Type IV secretory pathway, VirB4 components Intracellular trafficking and secretion 38637709 Common - putative integrase/recombinase PHG044 207 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637993 Nonpathogen - hypothetical protein PHG332 1 None None None 38637817 Common - hypothetical protein PHG153 2 COG2916 Hns, DNA-binding protein H-NS General function prediction only 38637715 Nonpathogen - putative hydrogenase-specific protease PHG050 2 None None None 38637846 Common - hypothetical protein PHG182 13 None None None 38637849 Common - putative regulatory protein PHG185 189 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 38637907 Common norR anaerobic nitric oxide reductase transcription regulator PHG246 169 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 38637842 Common phaZ putative PHB depolymerase PHG178 43 COG4553 DepA, Poly-beta-hydroxyalkanoate depolymerase Lipid metabolism 38637760 Common hypB2 HypB2 PHG095 135 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 38637899 Common - hypothetical protein PHG235 130 COG1959 COG1959, Predicted transcriptional regulator Transcription 38637852 Common - hypothetical protein PHG188 15 None None None 38637859 Nonpathogen - hypothetical protein PHG195 1 None None None 38638035 Common parA putative partitioning protein PHG374 206 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 38637722 Common - putative integrase/recombinase PHG057 203 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637916 Common - hypothetical protein PHG255 23 COG3154 COG3154, Putative lipid carrier protein Lipid metabolism 38637940 Common - putative invertase PHG279 10 None None None 38637767 Common - hypothetical protein PHG102 8 None None None 38638051 Common - hypothetical protein PHG390 70 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 38638054 Common - putative muconolactone isomerase PHG393 8 COG4829 CatC1, Muconolactone delta-isomerase Secondary metabolites biosynthesis, transport, and catabolism 38638082 Common cbbPp phosphoribulokinase PHG421 52 COG3954 PrkB, Phosphoribulokinase Energy production and conversion 38637776 Common - hypothetical protein PHG111 9 COG2348 COG2348, Uncharacterized protein involved in methicillin resistance Defense mechanisms 38637999 Common - hypothetical protein PHG338 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 38637727 Common - putative transposase PHG062 42 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 38637679 Common hoxV HoxV PHG011 15 COG3259 FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit Energy production and conversion 38637967 Common - putative nucleotide-binding protein PHG306 16 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 38637828 Common - hypothetical protein PHG164 4 None None None 38638000 Common - hypothetical protein PHG339 2 None None None 38637911 Common nosD putative copper binding periplasmic protein PHG250 52 COG3420 NosD, Nitrous oxidase accessory protein Inorganic ion transport and metabolism 38637973 Common parB2 putative partitioning protein PHG312 180 COG1475 Spo0J, Predicted transcriptional regulators Transcription 38637928 Common - hypothetical protein PHG267 54 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 38637832 Common - hypothetical protein PHG168 43 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 38637803 Nonpathogen - hypothetical protein PHG139 1 None None None 38637693 Common - putative TonB-dependent outer membrane receptor PHG028 28 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 38638011 Nonpathogen - hypothetical protein PHG350 1 None None None 38637752 Common - putative transposase PHG087 27 None None None 38637741 Common hypE2 HypE2 PHG076 165 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38638061 Common nagM2 putative NagM-like protein PHG400 67 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 38638005 Nonpathogen - hypothetical protein PHG344 1 None None None 38637705 Common - putative integrase/recombinase PHG040 220 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637839 Common - hypothetical protein PHG175 40 COG4279 COG4279, Uncharacterized conserved protein Function unknown 38637787 Common iucA putative iron transport protein PHG122 46 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 38637897 Common - hypothetical protein PHG233 21 None None None 38637791 Common - probable ferrisiderophore receptor protein, TonB dependent PHG126 125 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 38637676 Common hoxQ HoxQ PHG008 20 None None None 38637696 Common - putative transposase PHG031 137 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637936 Common mobB putative molybdopterin cofactor biosysnthesis protein PHG275 74 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 38637872 Common - putative transposase PHG208 46 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637868 Nonpathogen - hypothetical protein PHG204 2 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 38637890 Common - hypothetical protein PHG226 123 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 38638041 Common pemI putative PemI-like protein PHG380 10 COG2336 MazE, Growth regulator Signal transduction mechanisms 38638074 Common - hypothetical protein PHG413 5 None None None 38637854 Common - hypothetical protein PHG190 3 COG4688 COG4688, Uncharacterized protein conserved in bacteria Function unknown 38637726 Common - putative transposase PHG061 21 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 38637847 Common - putative regulatory protein PHG183 6 COG1476 COG1476, Predicted transcriptional regulators Transcription 38637753 Common hoxF NAD-reducing hydrogenase diaphorase moiety large subunit PHG088 161 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 38637877 Common napC periplasmic nitrate reductase transmembrane protein PHG213 49 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 38637810 Common - hypothetical protein PHG146 89 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 38637762 Nonpathogen - hypothetical protein PHG097 2 None None None 38637862 Nonpathogen - hypothetical protein PHG198 1 None None None 38638026 Common - hypothetical protein PHG365 5 None None None 38637880 Common ccmC ABC heme export system PHG216 121 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 38637836 Common - hypothetical protein PHG172 15 COG3668 ParE, Plasmid stabilization system protein General function prediction only 38637949 Nonpathogen - hypothetical protein PHG288 1 None None None 38637807 Nonpathogen - hypothetical protein PHG143 1 None None None 38637985 Common - hypothetical protein PHG324 42 COG4422 COG4422, Bacteriophage protein gp37 Function unknown 38637990 Common - putative regulatory protein PHG329 17 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 38637942 Nonpathogen - hypothetical protein PHG281 1 None None None 38637834 Common mrr putative endonuclease PHG170 17 COG1715 Mrr, Restriction endonuclease Defense mechanisms 38637830 Common - hypothetical protein PHG166 4 None None None 38637711 Common - putative integrase/recombinase PHG046 198 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637923 Common dnrD transcriptional regulator PHG262 153 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 38637774 Common - putative ATPase PHG109 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 38638084 Common cbbEp ribulose-5-phosphate 3-epimerase PHG423 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 38637850 Common helZ3 putative helicase, superfamily II PHG186 142 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 38637736 Nonpathogen - hypothetical protein PHG071 1 None None None 38637896 Common - putative acetyl-coa acetyltransferase PHG232 129 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 38637975 Common helZ1 putative helicase superfamily II PHG314 87 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 38637946 Nonpathogen - hypothetical protein PHG285 1 None None None 38637674 Common hoxL HoxL PHG006 14 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38637769 Common - hypothetical protein PHG104 2 None None None 38638059 Common fadD2 acyl-CoA synthetase PHG398 213 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 38638045 Common mmlJ putative methylmuconolactone isomerase PHG384 23 COG4829 CatC1, Muconolactone delta-isomerase Secondary metabolites biosynthesis, transport, and catabolism 38637720 Nonpathogen - hypothetical protein PHG055 1 None None None 38637958 Common - hypothetical protein PHG297 2 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 38637819 Nonpathogen - hypothetical protein PHG155 1 None None None 38637997 Common - hypothetical protein PHG336 3 None None None 38637703 Common - putative integrase/recombinase PHG038 219 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637903 Common - hypothetical protein PHG239 22 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 38638018 Common trbG putative cannel-forming protein PHG357 51 COG3504 VirB9, Type IV secretory pathway, VirB9 components Intracellular trafficking and secretion 38637932 Common narH respiratory nitrate reductase subunit PHG271 147 COG1140 NarY, Nitrate reductase beta subunit Energy production and conversion 38637789 Common - putative siderophore biosynthesis protein PHG124 41 COG4264 RhbC, Siderophore synthetase component Secondary metabolites biosynthesis, transport, and catabolism 38637921 Nonpathogen - hypothetical protein PHG260 1 None None None 38638068 Common tniA putative TniA-like transposition protein PHG407 61 None None None 38637965 Common - hypothetical protein PHG304 2 None None None 38637913 Common nosZ nitrous-oxide reductase PHG252 40 COG4263 NosZ, Nitrous oxide reductase Energy production and conversion 38637934 Common narI respiratory nitrate reductase transmembrane subunit PHG273 51 COG2181 NarI, Nitrate reductase gamma subunit Energy production and conversion 38638043 Common nagM6 putative NagM-like protein PHG382 25 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 38637685 Common hypE1 HypE1 PHG017 152 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38637669 Common hoxK membrane-bound [NiFe] hydrogenase small subunit PHG001 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 38637801 Nonpathogen - putative integrase/recombinase PHG137 12 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637866 Common phaP2 Phasin PHG202 16 None None None 38637823 Common tnpB putative transposition-related protein PHG159 52 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637951 Common - hypothetical protein PHG290 2 None None None 38637845 Common - hypothetical protein PHG181 7 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 38637724 Common - putative integrase/recombinase PHG059 6 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637805 Common - putative integrase/recombinase PHG141 183 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637683 Common hypC1 HypC1 PHG015 99 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38637793 Common - putative transposition protein PHG128 27 None None None 38637983 Common - hypothetical protein PHG322 16 None None None 38637876 Common napB periplasmic nitrate reductase small subunit PHG212 38 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 38637889 Common - hypothetical protein PHG225 115 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 38638076 Common tnpA putative transposase of IS885 PHG415 66 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637763 Common - hypothetical protein PHG098 1 None None None 38638030 Common - hypothetical protein PHG369 5 None None None 38637771 Common - hypothetical protein PHG106 2 COG2916 Hns, DNA-binding protein H-NS General function prediction only 38638057 Common nagM3 putative NagM-like protein PHG396 67 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 38637827 Common - hypothetical protein PHG163 10 None None None 38637737 Common hypF3 HypF3 PHG072 110 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38638028 Common - hypothetical protein PHG367 2 None None None 38638047 Common mmlH putative muconolactone transporter PHG386 181 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 38637820 Nonpathogen kfrA2 putative KfrA-like protein PHG156 1 None None None 38637734 Common - hypothetical protein PHG069 7 None None None 38637814 Nonpathogen - hypothetical protein PHG150 1 None None None 38637824 Common tnpC putative transposase protein PHG160 58 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 38638022 Common trbD putative TrbD-like protein PHG361 3 COG5268 TrbD, Type IV secretory pathway, TrbD component Cell motility and secretion / Intracellular trafficking and secretion 38637988 Common - putative endonuclease PHG327 23 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 38637697 Common - putative transposase PHG032 72 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637981 Common - hypothetical protein PHG320 4 None None None 38638065 Common catC putative muconolactone isomerase PHG404 24 COG4829 CatC1, Muconolactone delta-isomerase Secondary metabolites biosynthesis, transport, and catabolism 38637887 Common - putative transposase PHG223 12 None None None 38637860 Common - hypothetical protein PHG196 1 None None None 38637757 Common hoxW [NiFe] hydrogenase (HoxH-specific) C-terminal protease PHG092 13 None None None 38638058 Common - hypothetical protein PHG397 104 COG2030 MaoC, Acyl dehydratase Lipid metabolism 38638078 Common cbbKp 3-phosphoglycerate kinase PHG417 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 38637843 Common - hypothetical protein PHG179 2 None None None 38637883 Common ccmG cytochrome C-type biogenesis protein PHG219 147 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 38637716 Common - putative transposase PHG051 25 None None None 38638034 Common repB putative replication protein PHG373 11 COG5527 COG5527, Protein involved in initiation of plasmid replication DNA replication, recombination, and repair 38637870 Common - hypothetical protein PHG206 2 None None None 38637744 Common - hypothetical protein PHG079 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 38637848 Common dinJ DNA-damage-inducible protein PHG184 24 COG3077 RelB, DNA-damage-inducible protein J DNA replication, recombination, and repair 38637978 Common - hypothetical protein PHG317 3 None None None 38637719 Common - hypothetical protein PHG054 2 None None None 38637858 Common - hypothetical protein PHG194 32 COG5654 COG5654, Uncharacterized conserved protein Function unknown 38637891 Common - hypothetical protein PHG227 6 COG3174 COG3174, Predicted membrane protein Function unknown 38637765 Nonpathogen - hypothetical protein PHG100 1 None None None 38637717 Nonpathogen - hypothetical protein PHG052 1 None None None 38638071 Common - hypothetical protein PHG410 5 None None None 38637688 Common hoxB regulatory [NiFe] hydrogenase small subunit PHG020 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 38637702 Common - putative integrase/recombinase PHG037 164 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637918 Common - probable protease PHG257 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 38637813 Nonpathogen - hypothetical protein PHG149 1 None None None 38638003 Common - hypothetical protein PHG342 8 None None None 38637931 Common narG respiratory nitrate reductase catalytic subunit PHG270 100 COG5013 NarG, Nitrate reductase alpha subunit Energy production and conversion 38637778 Common - putative transposase PHG113 35 None None None 38638032 Common helD putative DNA helicase superfamily I PHG371 229 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 38637955 Nonpathogen - hypothetical protein PHG294 1 None None None 38637945 Nonpathogen - hypothetical protein PHG284 1 None None None 38637795 Common - putative integrase/recombinase PHG130 128 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637924 Common - hypothetical protein PHG263 9 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 38638067 Common - putative regulatory protein PHG406 55 COG0583 LysR, Transcriptional regulator Transcription 38637784 Common - putative methyltransferase PHG119 1 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 38637756 Common hoxH NAD-reducing hydrogenase hydrogenase moiety large subunit PHG091 100 COG3259 FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit Energy production and conversion 38638049 Common catI oxoadipate CoA transferase alpha subunit PHG388 96 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 38637961 Common - hypothetical protein PHG300 3 None None None 38638015 Common pilL putative PilL-like protein PHG354 3 None None None 38637894 Common - probable alcohol dehydrogenase PHG230 48 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 38637901 Common - probable hydroxylase PHG237 138 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 38637996 Common ssb single-strand DNA-binding protein PHG335 214 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 38637881 Common ccmE cytochrome c-type biogenesis protein CcmE PHG217 95 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 38638063 Common nagM5 putative NagM-like protein PHG402 76 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 38637885 Common ccmH cytochrome C-type biogenesis protein PHG221 48 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 38638073 Common tnpA putative transposase PHG412 98 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637874 Common napD periplasmic nitrate reductase accessory protein PHG210 24 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 38637809 Common tnpA putative transposase PHG145 52 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 38637816 Common - hypothetical protein PHG152 6 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 38637714 Common - putative transposase PHG049 17 None None None 38638024 Common trbJ putative TrbJ-like protein PHG363 6 COG5314 COG5314, Conjugal transfer/entry exclusion protein Intracellular trafficking and secretion 38637746 Common - putative sensor of two-component regulatory systems PHG081 215 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 38637750 Common - putative transposase PHG085 14 None None None 38638040 Nonpathogen - hypothetical protein PHG379 1 None None None 38637728 Common hoxN2 putative nickel permease PHG063 38 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 38638056 Common - putative 2-nitropropane dioxygenase PHG395 122 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 38637759 Common hypA2 HypA2 PHG094 101 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 38637926 Common narX transmembrane nitrate/nitrite sensor kinase PHG265 150 COG3850 NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific Signal transduction mechanisms 38637841 Nonpathogen - putative histone-like protein PHG177 1 None None None 38637906 Common norA cell morphogenesis/cell wall metabolism regulator PHG245 45 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 38638036 Common parB putative partitioning protein PHG375 184 COG1475 Spo0J, Predicted transcriptional regulators Transcription 38637691 Common hoxN1 high-affinity nickel permease PHG023 37 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 38637971 Common - hypothetical protein PHG310 8 None None None 38637953 Common - hypothetical protein PHG292 6 None None None 38637731 Common - hypothetical protein PHG066 9 None None None 38637994 Nonpathogen - hypothetical protein PHG333 1 None None None 38637908 Common nosL putative lipoprotein PHG247 27 COG4314 NosL, Predicted lipoprotein involved in nitrous oxide reduction Energy production and conversion 38637938 Common - putative integrase PHG277 28 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637869 Common - hypothetical protein PHG205 25 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 38638007 Nonpathogen pilS1 putative prepilin type IV pili PHG346 1 None None None 38637768 Common - hypothetical protein PHG103 7 None None None 38638001 Common - hypothetical protein PHG340 4 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 38637700 Nonpathogen - putative integrase/recombinase PHG035 2 None None None 38637960 Common - hypothetical protein PHG299 20 None None None 38637838 Nonpathogen - hypothetical protein PHG174 6 None None None 38638037 Common xerD putative integrase/recombinase PHG376 107 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637790 Common - putative siderophore biosynthesis protein PHG125 23 COG0439 AccC, Biotin carboxylase Lipid metabolism 38637947 Common - putative integrase/recombinase PHG286 11 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637856 Common - hypothetical protein PHG192 3 None None None 38637992 Nonpathogen - hypothetical protein PHG331 1 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 38637747 Common - putative integrase/recombinase PHG082 192 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637974 Nonpathogen - hypothetical protein PHG313 1 None None None 38637797 Nonpathogen - hypothetical protein PHG132 1 None None None 38638086 Common cbbXp CbbX PHG425 50 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 38637786 Common lysA putative diaminopimelate decarboxylase PHG121 206 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 38638013 Nonpathogen bfpG putative BfpG-like protein PHG352 2 None None None 38637708 Common - transposase PHG043 61 COG3464 COG3464, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637678 Common hoxT HoxT PHG010 16 None None None 38637986 Common - putative DNA methyltransferase PHG325 15 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 38637864 Common fhp nitric oxide dioxygenase PHG200 142 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 38637799 Common - putative integrase/recombinase PHG134 182 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637959 Nonpathogen - hypothetical protein PHG298 1 None None None 38637909 Common nosY putative transmembrane protein PHG248 28 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 38637675 Common hoxO HoxO PHG007 17 None None None 38637792 Nonpathogen - hypothetical protein PHG127 1 None None None 38637840 Common helZ2 putative helicase, superfamily II PHG176 140 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 38637844 Common - H-NS-like protein PHG180 4 COG2916 Hns, DNA-binding protein H-NS General function prediction only 38637898 Common - hypothetical protein PHG234 17 COG4309 COG4309, Uncharacterized conserved protein Function unknown 38637950 Common - hypothetical protein PHG289 16 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 38637802 Nonpathogen - hypothetical protein PHG138 1 None None None 38638042 Common pemK putative PemK-like protein PHG381 32 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 38637910 Common nosF putative copper ATP-binding ABC transporter PHG249 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 38637704 Nonpathogen - putative integrase/recombinase PHG039 12 None None None 38637749 Common - putative transposase PHG084 8 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637740 Common hypD2 HypD2 PHG075 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38638020 Common trbB putative chaperonin PHG359 219 COG4962 CpaF, Flp pilus assembly protein, ATPase CpaF Intracellular trafficking and secretion 38638027 Common traG putative channel-forming protein PHG366 31 COG3505 VirD4, Type IV secretory pathway, VirD4 components Intracellular trafficking and secretion 38637998 Common - hypothetical protein PHG337 2 None None None 38638081 Common cbbTp transketolase PHG420 221 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 38637738 Common hypC2 HypC2 PHG073 86 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38638075 Common - putative NADH dehydrogenase PHG414 195 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 38637943 Nonpathogen - hypothetical protein PHG282 1 None None None 38637984 Nonpathogen - hypothetical protein PHG323 1 None None None 38637863 Common - hypothetical protein PHG199 7 COG4566 TtrR, Response regulator Signal transduction mechanisms 38638052 Nonpathogen - reverse transcriptase PHG391 1 None None None 38637941 Common - putative nucleotidyl-transferase PHG280 41 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 38637673 Common hoxM putative protease PHG005 74 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 38637681 Common hypB1 HypB1 PHG013 104 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 38637851 Common mvpA putative plasmid maintenance protein PHG187 73 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 38637837 Common - hypothetical protein PHG173 2 None None None 38637968 Common - hypothetical protein PHG307 9 None None None 38637775 Common - hypothetical protein PHG110 31 None None None 38637713 Common - putative integrase/recombinase PHG048 184 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637902 Common nrdG activase of anaerobic class III ribonucleotide reductase PHG238 82 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 38637833 Common - hypothetical protein PHG169 56 COG3326 COG3326, Predicted membrane protein Function unknown 38638019 Common - hypothetical protein PHG358 3 COG3736 VirB8, Type IV secretory pathway, component VirB8 Intracellular trafficking and secretion 38638029 Nonpathogen - hypothetical protein PHG368 1 None None None 38637976 Nonpathogen - hypothetical protein PHG315 1 None None None 38638088 Common rbcL ribulose bisophosphate carboxylase PHG427 67 COG1850 RbcL, Ribulose 1,5-bisphosphate carboxylase, large subunit Carbohydrate transport and metabolism 38637684 Common hypD1 HypD1 PHG016 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38638046 Nonpathogen mmlI putative 4-methylmuconolactone methylisomerase PHG385 1 None None None 38638039 Nonpathogen - hypothetical protein PHG378 1 None None None 38637818 Nonpathogen - hypothetical protein PHG154 1 None None None 38637915 Common nosX NosX PHG254 128 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 38637706 Common - putative integrase/recombinase PHG041 172 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637937 Common fnr transcriptional regulator PHG276 154 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 38637788 Common - putative efflux protein PHG123 25 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 38637867 Common - hypothetical protein PHG203 55 COG3573 COG3573, Predicted oxidoreductase General function prediction only 38638062 Common - putative regulatory protein PHG401 168 COG0583 LysR, Transcriptional regulator Transcription 38637780 Common - hypothetical protein PHG115 17 COG5486 COG5486, Predicted metal-binding integral membrane protein Function unknown 38637794 Common - putative integrase/recombinase PHG129 183 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637725 Common - putative transposase PHG060 24 None None None 38637754 Common hoxU NAD-reducing hydrogenase diaphorase moiety small subunit PHG089 182 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 38637742 Common hypA3 HypA3 PHG077 92 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 38637952 Common - hypothetical protein PHG291 9 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 38638044 Common tutC putative regulatory protein PHG383 87 COG2114 CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms 38638017 Common trbI putative channel-forming protein PHG356 57 COG2948 VirB10, Type IV secretory pathway, VirB10 components Intracellular trafficking and secretion 38637861 Common - hypothetical protein PHG197 17 COG3945 COG3945, Uncharacterized conserved protein Function unknown 38637982 Common uvrD putative helicase superfamily I PHG321 29 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 38637829 Common - hypothetical protein PHG165 16 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 38637695 Common - putative transposase PHG030 81 None None None 38637871 Common - putative transposase PHG207 12 None None None 38637764 Common - putative integrase/recombinase PHG099 148 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637806 Common - putative transposase, IS66 family PHG142 59 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637893 Common - probable alcohol dehydrogenase PHG229 196 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 38637875 Common napA periplasmic nitrate reductase large subunit PHG211 183 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 38637710 Common - putative integrase/recombinase PHG045 37 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637826 Nonpathogen - hypothetical protein PHG162 1 None None None 38637761 Common hypF2 HypF2 PHG096 109 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 38637772 Common - putative kinase PHG107 64 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 38637822 Common tnpA putative transposition-related protein PHG158 9 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 38637878 Common ccmA ABC heme export system atp-binding protein PHG214 245 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 38637712 Common - putative integrase/recombinase PHG047 19 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637811 Common - hypothetical protein PHG147 5 None None None 38637773 Common - hypothetical protein PHG108 3 None None None 38637963 Nonpathogen - hypothetical protein PHG302 1 None None None 38637831 Common uvrD putative helicase, superfamily I PHG167 189 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 38638050 Common - putative regulatory protein PHG389 192 COG0583 LysR, Transcriptional regulator Transcription 38638083 Common cbbFp fructose-1,6-bisphosphate PHG422 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 38637835 Common - hypothetical protein PHG171 5 COG3609 COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain Transcription 38638048 Common catJ oxoadipate CoA transferase beta subunit PHG387 91 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 38637671 Common hoxZ membrane-bound hydrogenase-linked b-type cytochrome PHG003 55 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 38637782 Nonpathogen - hypothetical protein PHG117 1 None None None 38637895 Common - hypothetical protein PHG231 67 COG1926 COG1926, Predicted phosphoribosyltransferases General function prediction only 38637922 Common - putative enoyl-(ACP) reductase PHG261 194 COG0623 FabI, Enoyl- acyl-carrier-protein 38638006 Nonpathogen pilS2 putative prepilin type IV pili PHG345 1 None None None 38637904 Common nrdD anaerobic ribonucleoside triphosphate reductase PHG240 108 COG1328 NrdD, Oxygen-sensitive ribonucleoside-triphosphate reductase Nucleotide transport and metabolism 38637933 Common narJ respiratory nitrate reductase subunit PHG272 56 COG2180 NarJ, Nitrate reductase delta subunit Energy production and conversion 38638012 Common pilN putative component of type II secretion apparatus PHG351 27 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 38637865 Common - hypothetical protein PHG201 20 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 38637957 Nonpathogen - hypothetical protein PHG296 1 None None None 38637935 Common - probable peptidyl-prolyl cis-trans isomerase PHG274 83 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 38637800 Common - putative integrase/recombinase PHG136 220 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637690 Common hoxJ histidine protein kinase PHG022 214 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 38637686 Common hypX HypX PHG018 23 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 38637721 Common - putative integrase/recombinase PHG056 180 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 38637917 Common - hypothetical protein PHG256 46 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 38637920 Common - hypothetical protein PHG259 20 COG4273 COG4273, Uncharacterized conserved protein Function unknown 38638069 Common tniB putative TniB-like transposition protein PHG408 34 COG1474 CDC6, Cdc6-related protein, AAA superfamily ATPase DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones 38637966 Common - hypothetical protein PHG305 11 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 38637929 Common narK1 putative nitrite/nitrate transporter PHG268 114 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 38637912 Common nosR putative transcription regulator PHG251 69 COG3901 NosR, Regulator of nitric oxide reductase transcription Transcription