Campylobacter jejuni RM1221, complete genome NC_003912 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 57238393 Common - molybdopterin-guanine dinucleotide biosynthesis protein, putative CJE1539 53 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 57237082 Common - iron-sulfur cluster binding protein CJE0070 98 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 57238368 Common - flagellin modification protein, PseA CJE1511 25 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 57237554 Pathogen - hypothetical protein CJE0552 1 None None None 57238001 Common pglG general glycosylation pathway protein CJE1262 9 None None None 57237034 Common - ABC transporter, ATP-binding protein CJE0832 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 57238264 Common oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA CJE0640 113 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 57238404 Pathogen - hypothetical protein CJE1552 1 None None None 57237461 Pathogen - lipoprotein, putative CJE0455 1 None None None 57237455 Common fur ferric uptake regulation protein CJE0449 201 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 57238413 Common - xanthine/uracil permease family protein CJE1561 141 COG2252 COG2252, Permeases General function prediction only 57238162 Pathogen - hypothetical protein CJE1426 1 None None None 57237468 Common - hypothetical protein CJE0462 47 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 57238669 Common - iron permease, FTR1 family CJE1830 81 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 57238078 Common ftsY signal recognition particle-docking protein FtsY CJE1340 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 57238291 Common alaS alanyl-tRNA synthetase CJE0613 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57238195 Common - hypothetical protein CJE0712 15 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 57237841 Pathogen - hypothetical protein CJE1096 1 None None None 57237999 Common prmA ribosomal protein L11 methyltransferase CJE1260 175 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 57238173 Pathogen - hypothetical protein CJE1438 1 None None None 57237590 Pathogen - hypothetical protein CJE0588 1 None None None 57237905 Common - high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein CJE1162 134 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 57238274 Common fliE flagellar hook-basal body protein FliE CJE0630 38 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 57238304 Pathogen - hypothetical protein CJE0598 1 None None None 57238560 Common - hypothetical protein CJE1713 103 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 57238060 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CJE1322 193 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 57238293 Common - oxidoreductase, Gfo/Idh/MocA family CJE0611 105 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 57238375 Common - nucleotidyltransferase family protein CJE1518 229 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 57238177 Common - type III restriction/modification enzyme, methylase subunit CJE0731 124 COG2189 COG2189, Adenine specific DNA methylase Mod DNA replication, recombination, and repair 57236954 Common - ATP-NAD kinase, putative CJE0744 240 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 57237856 Pathogen - hypothetical protein CJE1111 2 None None None 57237964 Common thiD phosphomethylpyrimidine kinase CJE1225 224 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 57238384 Common maf-6 motility accessory factor CJE1530 19 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 57237252 Common - hypothetical protein CJE0241 19 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 57238471 Common kpsM capsular polysaccharide ABC transporter, permease protein CJE1621 48 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 57237267 Pathogen - hypothetical protein CJE0257 1 None None None 57238080 Common - hypothetical protein CJE1342 30 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 57237861 Pathogen - hypothetical protein CJE1116 1 None None None 57237915 Common ctsW transformation system protein CJE1172 8 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 57238671 Common - hypothetical protein CJE1832 18 COG4393 COG4393, Predicted membrane protein Function unknown 57238606 Common rpsK 30S ribosomal protein S11 CJE1765 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 57237657 Common thrC threonine synthase CJE0903 130 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 57237634 Common - polyA polymerase family protein CJE0880 201 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 57237584 Pathogen - hypothetical protein CJE0582 1 None None None 57238067 Common - dihydroorotase CJE1329 168 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 57238694 Common - major facilitator superfamily protein CJE1855 71 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57237772 Pathogen - hypothetical protein CJE1022 1 None None None 57238601 Pathogen - hypothetical protein CJE1760 1 None None None 57237244 Common - baseplate assembly protein J, putative CJE0233 35 COG3948 COG3948, Phage-related baseplate assembly protein General function prediction only 57237573 Pathogen - hypothetical protein CJE0571 1 None None None 57237089 Common cydA cytochrome d ubiquinol oxidase, subunit I CJE0077 166 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 57237185 Common - biopolymer transport protein, ExbD/TolR family CJE0173 139 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 57237337 Common serB phosphoserine phosphatase SerB CJE0330 152 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 57237959 Pathogen ctsT transformation system protein CJE1220 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 57236906 Common leuA 2-isopropylmalate synthase CJE1889 215 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 57238157 Common - site-specific DNA-methyltransferase CJE1421 94 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 57237630 Common napD NapD CJE0876 6 COG3062 NapD, Uncharacterized protein involved in formation of periplasmic nitrate reductase Inorganic ion transport and metabolism 57237567 Pathogen - hypothetical protein CJE0565 1 None None None 57238237 Pathogen - hypothetical protein CJE0669 1 None None None 57238230 Common ilvB acetolactate synthase 3 catalytic subunit CJE0677 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 57238517 Common carA carbamoyl phosphate synthase small subunit CJE1667 232 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 57237299 Common - NifU family protein CJE0290 114 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 57238587 Common - hypothetical protein CJE1745 2 None None None 57237348 Common panC pantoate--beta-alanine ligase CJE0342 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 57237101 Common rplU 50S ribosomal protein L21 CJE0089 163 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 57238178 Common hypA hydrogenase nickel insertion protein HypA CJE0730 73 COG0375 HybF, Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) General function prediction only 57237334 Common carB carbamoyl phosphate synthase large subunit CJE0327 237 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 57238091 Common - hypothetical protein CJE1354 6 None None None 57236984 Common - hypothetical protein CJE0779 4 None None None 57238335 Common - hypothetical protein CJE1477 9 COG1427 COG1427, Predicted periplasmic solute-binding protein General function prediction only 57237578 Pathogen - hypothetical protein CJE0576 1 None None None 57237476 Pathogen - hypothetical protein CJE0470 1 None None None 57237317 Common - D12 class N6 adenine-specific DNA methyltransferase, putative CJE0310 31 COG4889 COG4889, Predicted helicase General function prediction only 57237449 Common - pantothenate kinase CJE0443 16 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 57237866 Pathogen - hypothetical protein CJE1122 2 None None None 57237574 Pathogen - lipoprotein, putative CJE0572 1 None None None 57236976 Common - S4 domain protein CJE0768 36 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 57238575 Common arsC arsenate reductase CJE1732 71 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 57237990 Common clpA ATP-dependent Clp protease, ATP-binding subunit ClpA CJE1251 221 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 57237800 Pathogen - hypothetical protein CJE1053 1 None None None 57237543 Common rpsL 30S ribosomal protein S12 CJE0540 228 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 57238130 Common - low molecular weight phosphotyrosine protein phosphatase family protein CJE1394 125 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 57237642 Common - prevent-host-death family protein CJE0888 1 None None None 57236896 Common - metallo-beta-lactamase family protein CJE1879 163 COG0595 COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily General function prediction only 57237699 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase CJE0945 208 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 57237112 Common atpA F0F1 ATP synthase subunit alpha CJE0100 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 57238349 Common - HAD-superfamily phosphatase, subfamily IIIC CJE1491 29 COG3882 FkbH, Predicted enzyme involved in methoxymalonyl-ACP biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 57237606 Common - hypothetical protein CJE0852 4 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 57237041 Pathogen - hypothetical protein CJE0840 1 None None None 57238453 Common - capsular polysaccharide biosynthesis protein, putative CJE1603 4 None None None 57237605 Common - hypothetical protein CJE0851 112 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 57237183 Common - TonB-dependent colicin receptor protein, putative CJE0171 37 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 57237006 Common glyQ glycyl-tRNA synthetase subunit alpha CJE0804 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 57237553 Pathogen - hypothetical protein CJE0551 1 None None None 57237787 Common - hypothetical protein CJE1039 146 COG0759 COG0759, Uncharacterized conserved protein Function unknown 57237170 Common - hypothetical protein CJE0158 3 None None None 57238051 Common fliR flagellar biosynthesis protein FliR CJE1313 112 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 57237389 Common polA DNA polymerase I CJE0383 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 57238438 Common tpiA triosephosphate isomerase CJE1588 217 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 57237520 Common - transcriptional regulator, putative CJE0516 65 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 57238325 Pathogen - hypothetical protein CJE1466 1 None None None 57238309 Pathogen - hypothetical protein CJE1450 1 None None None 57237164 Common - conserved hypothetical protein TIGR00046 CJE0152 19 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 57238214 Common - methyltransferase, putative CJE0693 60 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 57236921 Common gltB glutamate synthase, large subunit CJE0007 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 57237622 Common - ATP-dependent DNA helicase, putative CJE0868 230 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 57238685 Common - hypothetical protein CJE1846 38 COG2107 COG2107, Predicted periplasmic solute-binding protein General function prediction only 57238505 Common - hypothetical protein CJE1655 31 COG3893 COG3893, Inactivated superfamily I helicase DNA replication, recombination, and repair 57238042 Common - hypothetical protein CJE1304 6 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 57237595 Pathogen - hypothetical protein CJE0593 1 None None None 57238632 Common mutY A/G-specific adenine glycosylase CJE1792 233 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 57237564 Common - hypothetical protein CJE0562 4 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 57237722 Common rpsA 30S ribosomal protein S1 CJE0972 219 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 57237212 Common - D12 class N6 adenine-specific DNA methyltransferase CJE0201 13 COG3392 COG3392, Adenine-specific DNA methylase DNA replication, recombination, and repair 57237770 Common secA preprotein translocase subunit SecA CJE1020 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 57237402 Common trpF N-(5'phosphoribosyl)anthranilate isomerase CJE0396 173 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 57238570 Pathogen - hypothetical protein CJE1726 1 None None None 57237181 Pathogen - hypothetical protein CJE0169 1 None None None 57238100 Common htrA protease DO CJE1363 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 57238651 Common - hypothetical protein CJE1812 5 None None None 57238025 Common hldE D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase CJE1286 151 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 57236898 Common - hypothetical protein CJE1881 7 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 57237615 Common - lipoprotein, NLPA family CJE0861 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 57238314 Pathogen - hypothetical protein CJE1455 1 None None None 57237729 Pathogen - hypothetical protein CJE0979 1 None None None 57238615 Common - HrgA protein CJE1774 15 COG2958 COG2958, Uncharacterized protein conserved in bacteria Function unknown 57237826 Common rpoD RNA polymerase sigma factor RpoD CJE1081 217 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 57238225 Common tatB sec-independent translocase CJE0682 9 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 57238552 Common - bacterioferritin, putative CJE1705 111 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 57237526 Common secE preprotein translocase subunit SecE CJE0522 8 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 57237407 Common - hypothetical protein CJE0401 4 None None None 57238442 Common - hypothetical protein CJE1592 149 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 57238525 Common putP sodium/proline permease CJE1675 184 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 57237798 Pathogen - hypothetical protein CJE1051 1 None None None 57238640 Common exbB-2 TonB system transport protein ExbB CJE1800 146 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 57237753 Common rpiB ribose 5-phosphate isomerase B CJE1003 125 COG0698 RpiB, Ribose 5-phosphate isomerase RpiB Carbohydrate transport and metabolism 57237691 Common - major facilitator family protein CJE0937 76 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238209 Common nth endonuclease III CJE0698 237 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 57238035 Common - cation efflux family protein CJE1297 213 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 57237026 Pathogen - hypothetical protein CJE0824 1 None None None 57238566 Common - RloC protein, putative CJE1721 47 COG4694 COG4694, Uncharacterized protein conserved in bacteria Function unknown 57238056 Common petC ubiquinol--cytochrome c reductase, cytochrome c1 subunit CJE1318 11 COG2857 CYT1, Cytochrome c1 Energy production and conversion 57238288 Common clpB ATP-dependent chaperone protein ClpB CJE0616 231 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 57238151 Common - fibronectin type III domain protein CJE1415 20 COG3401 COG3401, Fibronectin type 3 domain-containing protein General function prediction only 57237710 Common - hypothetical protein CJE0960 1 None None None 57237743 Common - thioesterase family protein CJE0993 138 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 57238515 Common - sensory box sensor histidine kinase, putative CJE1665 212 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 57237677 Common ogt methylated-DNA--protein-cysteine S-methyltransferase CJE0923 219 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 57237415 Common glmM phosphoglucosamine mutase CJE0409 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 57237028 Common corA magnesium and cobalt transport protein CorA CJE0826 126 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 57238016 Common - lipooligosaccharide biosynthesis glycosyltransferase, putative CJE1277 140 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 57237766 Common aas 2-acyl-glycerophospho-ethanolamine acyltransferase CJE1016 227 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 57238158 Pathogen - emm-like protein CJE1422 1 None None None 57237488 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase CJE0483 222 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 57237390 Common - major facilitator family transporter CJE0384 167 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 57237011 Common ffh signal recognition particle protein CJE0809 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 57237501 Common - NUDIX domain protein CJE0497 24 None None None 57237365 Common lysA diaminopimelate decarboxylase CJE0359 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 57237508 Common - hypothetical protein CJE0504 3 None None None 57237703 Common pabB para-aminobenzoate synthase glutamine amidotransferase, component I CJE0949 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 57238658 Common - ABC transporter, ATP-binding protein CJE1819 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 57237447 Common pyk pyruvate kinase CJE0441 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 57238432 Common metC cystathionine beta-lyase CJE1581 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 57238553 Common pgi glucose-6-phosphate isomerase CJE1706 209 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 57237358 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase CJE0352 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 57238713 Common rplD 50S ribosomal protein L4 CJE1874 217 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 57237436 Common pyrF orotidine 5'-phosphate decarboxylase CJE0430 171 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 57237007 Common - conserved hypothetical protein TIGR00486 CJE0805 91 COG0327 COG0327, Uncharacterized conserved protein Function unknown 57237877 Pathogen - hypothetical protein CJE1133 2 None None None 57237355 Common - biotin biosynthesis protein BioC CJE0349 30 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 57237055 Common - hypothetical protein CJE0040 5 None None None 57237341 Common - hypothetical protein CJE0334 7 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 57237152 Common - methyl-accepting chemotaxis protein CJE0140 111 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57238124 Common purD phosphoribosylamine--glycine ligase CJE1387 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 57236920 Common - Na+/H+ antiporter family protein CJE0006 29 COG2056 COG2056, Predicted permease General function prediction only 57237410 Common - DNA-binding response regulator CJE0404 216 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57238399 Common nrfA cytochrome c552 CJE1546 40 COG3303 NrfA, Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit Inorganic ion transport and metabolism 57237929 Common - thiamine-phosphate pyrophosphorylase, putative CJE1187 60 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 57238709 Common rplV 50S ribosomal protein L22 CJE1870 214 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 57237193 Common - hypothetical protein CJE0181 186 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 57237636 Common - aminotransferase, putative CJE0882 129 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 57237925 Common murG N-acetylglucosaminyl transferase CJE1183 207 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 57237063 Pathogen - hypothetical protein CJE0050 1 None None None 57237976 Common yajC preprotein translocase subunit YajC CJE1237 168 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 57237669 Common ilvA threonine dehydratase CJE0915 223 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 57237816 Common - iron-sulfur cluster-binding domain protein CJE1071 175 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 57237660 Common - amino acid-binding protein CJE0906 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 57237126 Common - pyrazinamidase/nicotinamidase, putative CJE0114 11 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 57238116 Common hemE uroporphyrinogen decarboxylase CJE1379 180 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 57238200 Common - hypothetical protein CJE0707 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 57238390 Common cdsA phosphatidate cytidylyltransferase CJE1536 216 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 57237833 Common aroB 3-dehydroquinate synthase CJE1088 207 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 57237531 Common rplL 50S ribosomal protein L7/L12 CJE0527 207 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 57238420 Common - iron-sulfur cluster-binding domain protein CJE1568 47 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 57236945 Common ilvC ketol-acid reductoisomerase CJE0735 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 57238425 Common fldA flavodoxin FldA CJE1573 77 COG0716 FldA, Flavodoxins Energy production and conversion 57237852 Common - TraG-like protein CJE1107 20 None None None 57237039 Common - hypothetical protein CJE0838 9 None None None 57237737 Common - hypothetical protein CJE0987 62 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 57237229 Pathogen - hypothetical protein CJE0218 1 None None None 57236927 Common - hypothetical protein CJE0015 12 COG4940 ComGF, Competence protein ComGF Intracellular trafficking and secretion 57237805 Common - lipoprotein, putative CJE1060 2 None None None 57237892 Pathogen - hypothetical protein CJE1149 1 None None None 57237424 Common - iron-sulfur cluster-binding domain protein CJE0418 81 COG0348 NapH, Polyferredoxin Energy production and conversion 57237492 Pathogen - hypothetical protein CJE0487 1 None None None 57238545 Common cas1 CRISPR-associated protein Cas1 CJE1695 29 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 57237286 Common argB acetylglutamate kinase CJE0277 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 57237503 Common - hypothetical protein CJE0499 26 COG2841 COG2841, Uncharacterized protein conserved in bacteria Function unknown 57237294 Common frr ribosome recycling factor CJE0285 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 57237276 Common - hypothetical protein CJE0266 1 None None None 57237899 Pathogen - hypothetical protein CJE1156 1 None None None 57237479 Pathogen - hypothetical protein CJE0473 1 None None None 57238071 Common - oxidoreductase, 2OG-Fe(II) oxygenase family CJE1333 53 COG3491 PcbC, Isopenicillin N synthase and related dioxygenases General function prediction only 57237538 Common - short chain dehydrogenase CJE0535 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 57237708 Pathogen - hypothetical protein CJE0958 1 None None None 57238621 Common - DNA-binding response regulator, putative CJE1780 10 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57238577 Common - methyl-accepting chemotaxis protein CJE1735 108 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57237302 Common rpmI 50S ribosomal protein L35 CJE0294 101 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 57238185 Common - hypothetical protein CJE0723 128 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 57238478 Common prfB peptide chain release factor 2 CJE1628 216 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 57238679 Pathogen - hypothetical protein CJE1840 1 None None None 57238664 Common nlpC lipoprotein NlpC CJE1825 142 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 57238535 Common - tat domain protein CJE1685 1 None None None 57238593 Common - peptide ABC transporter, ATP-binding protein CJE1751 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 57238144 Common - RelA/SpoT family protein CJE1408 207 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 57237514 Common nusA transcription elongation factor NusA CJE0510 216 COG0195 NusA, Transcription elongation factor Transcription 57236935 Common purB-1 adenylosuccinate lyase CJE0023 236 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 57237035 Common - HAD-superfamily subfamily IB hydrolase CJE0833 59 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 57238295 Common - tRNA 2-selenouridine synthase CJE0608 65 COG2603 COG2603, Predicted ATPase General function prediction only 57238008 Common pglJ general glycosylation pathway protein CJE1269 147 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 57238259 Common - polyprenyl synthetase family protein CJE0645 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 57237983 Common - ATP-dependent DNA helicase, UvrD/REP family CJE1244 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 57237751 Common cheR chemotaxis protein methyltransferase CheR CJE1001 149 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 57238352 Common - hypothetical protein CJE1494 3 None None None 57237122 Common slyD FKBP-type peptidyl-prolyl cis-trans isomerase SlyD CJE0110 133 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 57236917 Common gyrB DNA gyrase subunit B CJE0003 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 57237910 Common asd aspartate-semialdehyde dehydrogenase CJE1167 236 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 57238507 Common - hypothetical protein CJE1657 5 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 57238608 Common rpoA DNA-directed RNA polymerase subunit alpha CJE1767 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 57237888 Pathogen - hypothetical protein CJE1145 1 None None None 57237254 Common - Mu-like prophage I protein, putative CJE0244 19 COG4388 COG4388, Mu-like prophage I protein General function prediction only 57237652 Common - 7-alpha-hydroxysteroid dehydrogenase CJE0898 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 57237837 Pathogen - hypothetical protein CJE1092 1 None None None 57237535 Pathogen - hypothetical protein CJE0531 1 None None None 57237779 Pathogen - hypothetical protein CJE1029 1 None None None 57238692 Common bioB biotin synthase CJE1853 171 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 57237881 Pathogen - hypothetical protein CJE1137 2 None None None 57238187 Pathogen - hypothetical protein CJE0721 1 None None None 57236908 Common - hypothetical protein CJE1891 2 None None None 57238169 Pathogen - hypothetical protein CJE1433 1 None None None 57237065 Pathogen - hypothetical protein CJE0052 1 None None None 57238286 Common ctpA carboxyl-terminal protease CJE0618 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 57238155 Pathogen - DNA binding protein, putative CJE1419 1 None None None 57238382 Common maf-4 motility accessory factor CJE1525 20 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 57237466 Common - GTP-binding protein CJE0460 46 COG0486 ThdF, Predicted GTPase General function prediction only 57237218 Pathogen - hypothetical protein CJE0207 1 None None None 57238266 Common sucD succinyl-CoA synthase, alpha subunit CJE0638 215 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 57237758 Common - translation-associated GTPase CJE1008 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 57238366 Common hisF-1 imidazoleglycerol phosphate synthase, cyclase subunit CJE1509 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 57238203 Common - sodium-dependent transporter, putative CJE0704 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 57238522 Pathogen - hypothetical protein CJE1672 1 None None None 57238062 Common - methyl-accepting chemotaxis protein CJE1324 124 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57237195 Common - Mg chelatase-related protein CJE0183 189 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 57238406 Common ruvB Holliday junction DNA helicase B CJE1554 213 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 57237343 Common lpxB lipid-A-disaccharide synthase CJE0336 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 57238244 Common - hypothetical protein CJE0660 27 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 57238667 Pathogen - hypothetical protein CJE1828 1 None None None 57237457 Common glyA serine hydroxymethyltransferase CJE0451 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 57237830 Common - cell division protein FtsH, putative CJE1085 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 57237592 Common - hypothetical protein CJE0590 79 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 57237603 Common grpE co-chaperone protein GrpE CJE0849 210 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 57237819 Common argF ornithine carbamoyltransferase CJE1074 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 57237864 Pathogen - hypothetical protein CJE1119 1 None None None 57236974 Common rplI 50S ribosomal protein L9 CJE0766 214 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 57237103 Common obgE GTPase ObgE CJE0091 249 COG0536 Obg, Predicted GTPase General function prediction only 57238276 Common - Na/Pi-cotransporter, putative CJE0628 61 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 57237043 Pathogen - hypothetical protein CJE0842 1 None None None 57237966 Common - hypothetical protein CJE1227 89 COG2607 COG2607, Predicted ATPase (AAA+ superfamily) General function prediction only 57237659 Pathogen - hypothetical protein CJE0905 1 None None None 57238376 Common - hypothetical protein CJE1519 30 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 57238188 Common pstB phosphate ABC transporter, ATP-binding protein CJE0719 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 57238683 Common eno phosphopyruvate hydratase CJE1844 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 57237949 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CJE1210 197 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 57237382 Common - hypothetical protein CJE0376 7 None None None 57237560 Pathogen - hypothetical protein CJE0558 1 None None None 57237144 Common rbfA ribosome-binding factor A CJE0132 8 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 57237997 Common - phosphatidylserine decarboxylase-related protein CJE1258 11 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 57238073 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase CJE1335 140 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 57237234 Pathogen - hypothetical protein CJE0223 1 None None None 57238198 Common - macrolide-specific efflux protein macA CJE0709 177 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 57237545 Common fusA elongation factor G CJE0542 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 57237764 Common atpE F0F1 ATP synthase subunit C CJE1014 4 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 57237326 Common - 4-oxalocrotonate tautomerase family protein CJE0319 20 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 57237785 Common - hypothetical protein CJE1037 7 COG1847 Jag, Predicted RNA-binding protein General function prediction only 57237242 Common - tail fiber protein H, putative CJE0231 22 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 57238089 Common - hypothetical protein CJE1352 142 COG1496 COG1496, Uncharacterized conserved protein Function unknown 57238436 Common - hydrogenase, (NiFe)/(NiFeSe) small subunit family CJE1586 77 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 57237670 Common - CoA-binding domain protein CJE0916 120 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 57237000 Common - flagellar basal-body rod protein CJE0796 124 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 57238703 Common rplX 50S ribosomal protein L24 CJE1864 204 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 57237499 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II CJE0494 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 57237105 Common fmt methionyl-tRNA formyltransferase CJE0093 216 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 57236958 Common - membrane-bound lytic murein transglycosylase D, putative CJE0748 115 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 57238699 Common rplF 50S ribosomal protein L6 CJE1860 234 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 57237697 Common lepB signal peptidase I CJE0943 173 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 57238466 Common - capsular polysaccharide biosynthesis protein, putative CJE1616 10 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 57238197 Common - macrolide-specific efflux protein macB CJE0710 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 57237336 Common tal transaldolase CJE0329 88 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 57238585 Common nuoH NADH dehydrogenase subunit H CJE1743 192 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 57238730 Common rplC 50S ribosomal protein L3 CJE1875 216 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 57238617 Common hisI phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase CJE1776 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 57236971 Common era GTP-binding protein Era CJE0763 217 COG1159 Era, GTPase General function prediction only 57237474 Common - HIT family protein CJE0468 47 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 57237400 Common trpE anthranilate synthase component I CJE0394 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 57237649 Common pyrD dihydroorotate dehydrogenase 2 CJE0895 222 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 57237067 Common - hmcD domain protein CJE0054 4 None None None 57237297 Common cynT carbonic anhydrase CJE0288 149 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 57237030 Common - hypothetical protein CJE0828 28 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 57237486 Common - hypothetical protein CJE0481 4 None None None 57238449 Common - hypothetical protein CJE1599 12 None None None 57236951 Common ppa inorganic pyrophosphatase CJE0741 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 57238085 Common - hypothetical protein CJE1348 7 None None None 57238490 Common flgK flagellar hook-associated protein FlgK CJE1640 97 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 57238223 Common nidH dinucleoside polyphosphate hydrolase CJE0684 116 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 57237528 Common rplK 50S ribosomal protein L11 CJE0524 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 57238252 Common fliD flagellar capping protein CJE0652 91 COG1345 FliD, Flagellar capping protein Cell motility and secretion 57238543 Common - molybdopterin biosynthesis MoeA protein, putative CJE1693 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 57238211 Common - hypothetical protein CJE0696 132 COG2860 COG2860, Predicted membrane protein Function unknown 57238676 Common - thioredoxin family protein CJE1837 2 None None None 57238623 Common pgpA phosphatidylglycerophosphatase A CJE1782 82 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 57238302 Pathogen - hypothetical protein CJE0601 1 COG3851 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific Signal transduction mechanisms 57236947 Common dprA DNA processing protein A CJE0737 210 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 57237134 Common accD acetyl-CoA carboxylase subunit beta CJE0122 219 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 57237154 Common trxB thioredoxin-disulfide reductase CJE0142 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 57236982 Common - potassium-transporting ATPase, C subunit, putative CJE0776 94 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 57238340 Common accC-2 biotin carboxylase CJE1482 232 COG0439 AccC, Biotin carboxylase Lipid metabolism 57237024 Common - modification methylase, HemK family CJE0822 100 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 57238568 Common hsdM type I restriction-modification system, M subunit CJE1724 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 57238497 Common ctsD general secretory pathway protein D CJE1647 144 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 57237576 Pathogen - hypothetical protein CJE0574 1 None None None 57236969 Pathogen - hypothetical protein CJE0761 1 None None None 57238381 Common maf-3 motility accessory factor CJE1524 22 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 57237745 Common cstA carbon starvation protein A CJE0995 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 57237363 Common pth peptidyl-tRNA hydrolase CJE0357 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 57238480 Pathogen - hypothetical protein CJE1630 1 None None None 57238106 Common glyS glycyl-tRNA synthetase subunit beta CJE1369 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 57237387 Common motB flagellar motor protein MotB CJE0381 45 COG1360 MotB, Flagellar motor protein Cell motility and secretion 57237079 Common - hypothetical protein CJE0066 7 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 57238058 Common petA ubiquinol--cytochrome c reductase, iron-sulfur subunit CJE1320 97 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 57238595 Common - peptide ABC transporter, permease protein CJE1753 178 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 57238715 Pathogen - hypothetical protein CJE1527 1 None None None 57238337 Common - NADP-dependent malic enzyme, truncation CJE1479 192 COG0281 SfcA, Malic enzyme Energy production and conversion 57237075 Common folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase CJE0062 155 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 57237938 Common mutS recombination and DNA strand exchange inhibitor protein CJE1196 99 COG1193 COG1193, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 57238323 Pathogen - hypothetical protein CJE1464 1 None None None 57237506 Common - DNA polymerase III subunit epsilon CJE0502 145 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 57237679 Common metG methionyl-tRNA synthetase CJE0925 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237995 Common - hypothetical protein CJE1256 46 COG2833 COG2833, Uncharacterized protein conserved in bacteria Function unknown 57238033 Common - copper-translocating P-type ATPase CJE1295 231 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 57237720 Common serA D-3-phosphoglycerate dehydrogenase CJE0970 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 57237704 Common - site-specific recombinase, phage integrase family CJE0950 215 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 57237667 Common - hypothetical protein CJE0913 58 COG0795 COG0795, Predicted permeases General function prediction only 57237265 Pathogen - DNA-binding protein, putative CJE0255 2 None None None 57237952 Common rpsF 30S ribosomal protein S6 CJE1213 205 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 57238653 Common - hypothetical protein CJE1814 136 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 57238044 Common - hypothetical protein CJE1306 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 57238555 Common acs acetyl-CoA synthetase CJE1708 215 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 57238138 Common hydB quinone-reactive Ni/Fe-hydrogenase, large subunit CJE1402 97 COG0374 HyaB, Ni,Fe-hydrogenase I large subunit Energy production and conversion 57238388 Common - hypothetical protein CJE1534 8 COG3608 COG3608, Predicted deacylase General function prediction only 57237818 Common - hypothetical protein CJE1073 4 None None None 57236993 Common - hypothetical protein CJE0789 58 COG1002 COG1002, Type II restriction enzyme, methylase subunits Defense mechanisms 57237900 Common - cytochrome c biogenesis protein, CcmF/CycK/CcsA family CJE1157 107 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 57237715 Common - cell division protein FtsK, putative CJE0965 203 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 57238126 Common - organic solvent tolerance protein, putative CJE1389 95 COG1452 Imp, Organic solvent tolerance protein OstA Cell envelope biogenesis, outer membrane 57237727 Common - HIT family protein CJE0977 226 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 57238109 Common - phosphatase, Ppx/GppA family CJE1372 22 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 57237304 Common - hypothetical protein CJE0296 9 None None None 57237620 Common valS valyl-tRNA synthetase CJE0866 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237002 Common glnA glutamine synthetase, type I CJE0798 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 57238023 Common - lipooligosaccharide biosynthesis glycosyltransferase, putative CJE1284 19 COG3306 COG3306, Glycosyltransferase involved in LPS biosynthesis Cell envelope biogenesis, outer membrane 57237201 Common purF amidophosphoribosyltransferase CJE0189 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 57237498 Common acpP acyl carrier protein CJE0493 209 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 57237613 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJE0859 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 57238721 Pathogen - hypothetical protein CJE0799 1 None None None 57238319 Common - hypothetical protein CJE1460 7 None None None 57237824 Common - hypothetical protein CJE1079 117 COG2855 COG2855, Predicted membrane protein Function unknown 57237319 Common - methyl-accepting chemotaxis protein CJE0312 109 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57237587 Pathogen - hypothetical protein CJE0585 2 None None None 57238444 Common algC phosphomannomutase/phosphoglucomutase CJE1594 241 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 57237050 Common - hypothetical protein CJE0035 16 COG4487 COG4487, Uncharacterized protein conserved in bacteria Function unknown 57237748 Common - amino acid ABC transporter, permease protein PEB1 CJE0998 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 57237644 Common ruvA Holliday junction DNA helicase RuvA CJE0890 208 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 57236914 Common ruvC Holliday junction resolvase CJE1897 193 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 57237597 Pathogen - hypothetical protein CJE0595 1 COG2511 GatE, Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) Translation, ribosomal structure and biogenesis 57237196 Common def peptide deformylase CJE0184 212 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 57238642 Pathogen - hypothetical protein CJE1803 1 None None None 57238111 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase CJE1374 158 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 57237971 Common - hypothetical protein CJE1232 5 None None None 57238047 Common argS arginyl-tRNA synthetase CJE1309 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57238722 Common - ComEC/Rec2 family protein CJE1345 7 COG0658 ComEC, Predicted membrane metal-binding protein General function prediction only 57237629 Common napL NapL CJE0875 8 None None None 57237907 Common - cytochrome c family protein CJE1164 1 COG2863 COG2863, Cytochrome c553 Energy production and conversion 57238235 Pathogen - hypothetical protein CJE0671 1 None None None 57237417 Common - conserved hypothetical protein TIGR00701 CJE0411 97 COG1981 COG1981, Predicted membrane protein Function unknown 57238537 Pathogen - hypothetical protein CJE1687 1 None None None 57238662 Common map methionine aminopeptidase CJE1823 249 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 57236938 Common thyX FAD-dependent thymidylate synthase CJE0026 46 COG1351 THY1, Predicted alternative thymidylate synthase Nucleotide transport and metabolism 57236925 Common rbr rubrerythrin CJE0011 79 COG1592 COG1592, Rubrerythrin Energy production and conversion 57237208 Common - oligopeptide transporter, OPT family CJE0197 41 COG1297 COG1297, Predicted membrane protein Function unknown 57238415 Common - lipoprotein, VacJ family CJE1563 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 57238688 Pathogen - hypothetical protein CJE1849 1 None None None 57237871 Common - hypothetical protein CJE1127 2 None None None 57237397 Common - hypothetical protein CJE0391 10 COG0730 COG0730, Predicted permeases General function prediction only 57237328 Common - hypothetical protein CJE0321 66 COG1636 COG1636, Uncharacterized protein conserved in bacteria Function unknown 57238711 Common rplB 50S ribosomal protein L2 CJE1872 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 57237438 Common ribH riboflavin synthase subunit beta CJE0432 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 57238014 Common waaC lipopolysaccharide heptosyltransferase I CJE1275 52 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 57238485 Common - site-specific DNA methyltransferase, putative CJE1635 53 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 57237111 Common atpH F0F1 ATP synthase subunit delta CJE0099 21 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 57237284 Common argC N-acetyl-gamma-glutamyl-phosphate reductase CJE0275 215 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 57237422 Common cmeA RND efflux system, membrane fusion protein CmeA CJE0416 170 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 57237223 Pathogen - pathogenicity protein, homolog CJE0212 2 None None None 57238476 Common - PP-loop family protein CJE1626 173 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 57238397 Common ceuD enterochelin ABC transporter, ATP-binding protein CJE1543 249 COG4604 CeuD, ABC-type enterochelin transport system, ATPase component Inorganic ion transport and metabolism 57237191 Common - integral membrane protein, TerC family CJE0179 103 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 57236968 Pathogen - hypothetical protein CJE0759 1 None None None 57237429 Common - nucleotide-binding protein CJE0423 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 57237927 Common - hypothetical protein CJE1185 11 None None None 57237556 Pathogen - hypothetical protein CJE0554 1 None None None 57237988 Common - thioredoxin domain protein CJE1249 5 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 57237098 Common - lipoprotein, putative CJE0086 24 COG3417 FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) General function prediction only 57238114 Common - transporter, putative CJE1377 114 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57237638 Common - sensor histidine kinase CJE0884 140 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 57237118 Common - TonB domain protein CJE0106 5 None None None 57237934 Common dapE succinyl-diaminopimelate desuccinylase CJE1192 209 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 57237803 Common - methyltransferase, putative CJE1058 59 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 57237124 Common mtnA 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase CJE0112 93 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 57237339 Common cheA chemotaxis protein CheA CJE0332 224 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 57238343 Common flmA polysaccharide biosynthesis protein CJE1485 201 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 57236999 Common ftsZ cell division protein FtsZ CJE0795 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 57238202 Common - MOSC domain protein CJE0705 77 COG2258 COG2258, Uncharacterized protein conserved in bacteria Function unknown 57237831 Common - MiaB-like tRNA modifying enzyme CJE1086 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 57238312 Pathogen - hypothetical protein CJE1453 1 None None None 57237321 Common - methyl-accepting chemotaxis protein CJE0314 112 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57237777 Common - peptidyl-arginine deiminase family protein CJE1027 88 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 57237685 Common - YGGT family protein CJE0931 27 COG0762 COG0762, Predicted integral membrane protein Function unknown 57237444 Common serS seryl-tRNA synthetase CJE0438 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237732 Common - amino acid carrier protein CJE0982 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 57237248 Pathogen - hypothetical protein CJE0237 2 None None None 57237533 Common rpoC DNA-directed RNA polymerase, beta' subunit CJE0529 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 57237920 Pathogen - DnaJ domain protein CJE1178 2 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 57237371 Common fliH flagellar assembly protein H CJE0365 20 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 57238011 Common wlaB ABC transporter, ATP-binding/permease protein CJE1272 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 57237510 Common - hypothetical protein CJE0506 4 None None None 57237894 Common - hypothetical protein CJE1151 3 None None None 57237472 Pathogen - hypothetical protein CJE0466 1 None None None 57237762 Common - sodium transporter, putative CJE1012 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 57237664 Common - hypothetical protein CJE0910 3 None None None 57238450 Common kpsS capsule polysaccharide export protein KpsS CJE1600 30 COG3562 KpsS, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 57237330 Common lpxA UDP-N-acetylglucosamine acyltransferase CJE0323 150 COG1043 LpxA, Acyl- acyl carrier protein 57237320 Common - zinc transporter ZupT CJE0313 85 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 57237739 Common - SCO1/SenC family protein CJE0989 90 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 57238571 Common - hypothetical protein CJE1727 65 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 57238055 Common - cyclopropane-fatty-acyl-phospholipid synthase, putative CJE1317 146 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 57238502 Common rpsI 30S ribosomal protein S9 CJE1652 249 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 57237157 Common hom homoserine dehydrogenase CJE0145 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 57236941 Common ansA L-asparaginase CJE0029 140 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 57237137 Common tyrA prephenate dehydrogenase CJE0125 152 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 57238271 Common - hypothetical protein CJE0633 184 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 57238463 Common - capsular polysaccharide biosynthesis protein, putative CJE1613 12 COG1887 TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC Cell envelope biogenesis, outer membrane 57237437 Common nusB transcription antitermination protein NusB CJE0431 180 COG0781 NusB, Transcription termination factor Transcription 57238625 Common prfA peptide chain release factor 1 CJE1784 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 57238389 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJE1535 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 57238139 Common hydA quinone-reactive Ni/Fe-hydrogenase, small subunit CJE1403 80 COG1740 HyaA, Ni,Fe-hydrogenase I small subunit Energy production and conversion 57236987 Common priA primosome assembly protein PriA CJE0782 201 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 57238701 Common rpsN 30S ribosomal protein S14 CJE1862 185 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 57238083 Common rbn ribonuclease BN CJE1346 59 COG1295 Rbn, Predicted membrane protein Function unknown 57238261 Common - hypothetical protein CJE0643 1 None None None 57237783 Common purL phosphoribosylformylglycinamidine synthase II CJE1035 233 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 57238488 Pathogen - hypothetical protein CJE1638 1 None None None 57238282 Common - hypothetical protein CJE0622 7 None None None 57237524 Common tuf elongation factor Tu CJE0520 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 57238509 Common - hypothetical protein CJE1659 2 None None None 57238344 Common - aminotransferase, DegT/DnrJ/EryC1/StrS family CJE1486 190 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 57238210 Common - DNA/RNA non-specific endonuclease CJE0697 37 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 57238455 Common - capsular polysaccharide biosynthesis protein, putative CJE1605 3 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 57238681 Common - hypothetical protein CJE1842 4 None None None 57237313 Common - sulfatase, putative CJE0306 60 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 57237769 Common - permease, putative CJE1019 153 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 57237174 Common - hypothetical protein CJE0162 61 COG1971 COG1971, Predicted membrane protein Function unknown 57236950 Common msrA methionine sulfoxide reductase A CJE0740 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 57237978 Common metK S-adenosylmethionine synthetase CJE1239 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 57237599 Common tonB TonB CJE0845 4 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 57237507 Common thiC thiamine biosynthesis protein ThiC CJE0503 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 57238492 Common - hypothetical protein CJE1642 109 COG0730 COG0730, Predicted permeases General function prediction only 57238167 Pathogen - hypothetical protein CJE1431 1 None None None 57237609 Common speA arginine decarboxylase CJE0855 161 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 57237141 Common thrB homoserine kinase CJE0129 99 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 57237563 Pathogen - hypothetical protein CJE0561 1 None None None 57237943 Common guaB inositol-5-monophosphate dehydrogenase CJE1201 242 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 57237240 Common - hypothetical protein CJE0229 7 None None None 57237547 Common - DNA binding domain, excisionase family CJE0545 2 None None None 57238289 Common pbpA penicillin-binding protein 1A CJE0615 206 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 57237947 Common - competence/damage-inducible domain protein CJE1205 190 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 57237517 Common - peptidase, putative CJE0513 147 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 57237107 Common - chromosome partitioning protein, ParA family CJE0095 232 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 57238190 Common - phosphate ABC transporter, permease protein PstC, putative CJE0717 223 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 57238087 Common - peptidase, M23/M37 family CJE1350 192 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 57237009 Common waaA 3-deoxy-D-manno-octulosonic-acid transferase CJE0807 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 57237451 Common - lipoprotein, putative CJE0445 7 None None None 57238099 Common - DNA-binding response regulator CJE1362 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57238408 Common fumC fumarate hydratase CJE1556 222 COG0114 FumC, Fumarase Energy production and conversion 57238564 Common - transcriptional regulator, putative CJE1717 131 COG1733 COG1733, Predicted transcriptional regulators Transcription 57238308 Pathogen - hypothetical protein CJE1449 1 None None None 57237465 Common sdhB succinate dehydrogenase iron-sulfur subunit CJE0459 209 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 57238256 Pathogen - hypothetical protein CJE0648 1 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 57238364 Common - flagellar protein, putative CJE1507 25 COG3980 spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase Cell envelope biogenesis, outer membrane 57238095 Common - DNA-binding response regulator CJE1358 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57237954 Common rpsR 30S ribosomal protein S18 CJE1215 210 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 57237249 Pathogen - hypothetical protein CJE0238 1 None None None 57236915 Common dnaA chromosomal replication initiation protein CJE0001 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 57237960 Pathogen - hypothetical protein CJE1221 1 None None None 57238377 Common ptmB posttranslational flagellin modification protein B CJE1520 65 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 57238063 Common - methyl-accepting chemotaxis protein CJE1325 82 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 57238005 Common pglC general glycosylation pathway protein CJE1266 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 57238267 Common sucC succinyl-CoA synthase, beta subunit CJE0637 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 57237619 Common - ABC transporter, ATP-binding protein CJE0865 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 57237845 Common - death-on-curing family protein CJE1100 13 COG3654 Doc, Prophage maintenance system killer protein General function prediction only 57237057 Common flgE-1 flagellar hook protein CJE0042 127 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 57237049 Common - drug resistance transporter, Bcr/CflA family CJE0034 197 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238401 Common ppk polyphosphate kinase CJE1548 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 57238290 Common maf Maf-like protein CJE0614 133 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 57237919 Common - AcrB/AcrD/AcrF family protein CJE1177 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 57238410 Common glmS D-fructose-6-phosphate amidotransferase CJE1558 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 57238311 Common - hypothetical protein CJE1452 8 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 57237912 Pathogen - hypothetical protein CJE1169 1 None None None 57238075 Pathogen - hypothetical protein CJE1337 1 None None None 57237992 Common - methyl-accepting chemotaxis protein CJE1253 133 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57238370 Common - NAD-dependent epimerase/dehydratase family protein CJE1513 236 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 57238605 Common rpsM 30S ribosomal protein S13 CJE1764 248 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 57237757 Common - leucyl aminopeptidase CJE1007 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 57237458 Common - hypothetical protein CJE0452 5 None None None 57237037 Pathogen - hypothetical protein CJE0835 1 None None None 57238284 Common purS phosphoribosylformylglycinamidine synthase, purS protein CJE0620 115 COG1828 PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Nucleotide transport and metabolism 57238278 Common - hypothetical protein CJE0626 11 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 57237345 Common surE stationary phase survival protein SurE CJE0339 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 57238153 Common - rod shape-determining protein RodA, putative CJE1417 206 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 57237251 Common - hypothetical protein CJE0240 2 None None None 57237084 Common lctP L-lactate permease CJE0072 105 COG1620 LldP, L-lactate permease Energy production and conversion 57237883 Pathogen - hypothetical protein CJE1139 2 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 57237654 Common - metallo-beta-lactamase family protein CJE0900 200 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 57238181 Common hypC hydrogenase assembly chaperone HypC/HupF CJE0727 86 COG0298 HypC, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 57238297 Common trpC indole-3-glycerol phosphate synthase CJE0606 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 57238330 Pathogen - phage terminase, small subunit, putative CJE1472 2 None None None 57237801 Pathogen - hypothetical protein CJE1054 1 None None None 57238221 Common - hypothetical protein CJE0686 7 None None None 57237256 Common - hypothetical protein CJE0246 12 None None None 57238017 Common - lipooligosaccharide biosynthesis galactosyltransferase, putative CJE1278 202 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 57237018 Common - 3-deoxy-7-phosphoheptulonate synthase CJE0816 73 COG3200 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 57238724 Pathogen - hypothetical protein CJE1442 1 None None None 57238717 Pathogen - hypothetical protein CJE0242 1 None None None 57237895 Pathogen - hypothetical protein CJE1152 1 None None None 57237921 Common - arginyl-tRNA-protein transferase CJE1179 86 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 57236924 Common comEA competence protein ComEA CJE0010 101 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 57237902 Common livG high affinity branched-chain amino acid ABC transporter, ATP-binding protein CJE1159 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 57238548 Common coaE dephospho-CoA kinase CJE1701 200 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 57237373 Common - transcriptional regulator, Fur family CJE0367 188 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 57237496 Common - TenA/Thi-4 family protein CJE0491 74 COG0819 TenA, Putative transcription activator Transcription 57237003 Common - hypothetical protein CJE0800 5 None None None 57238394 Common pldA phospholipase A CJE1540 52 COG2829 PldA, Outer membrane phospholipase A Cell envelope biogenesis, outer membrane 57237734 Common alr alanine racemase CJE0984 195 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 57238143 Common tyrS tyrosyl-tRNA synthetase CJE1407 239 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57238028 Common cyf cytochrome c553 CJE1289 11 COG2863 COG2863, Cytochrome c553 Energy production and conversion 57238204 Common - hypothetical protein CJE0703 17 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 57238120 Common - hypothetical protein CJE1383 1 None None None 57238423 Common - hypothetical protein CJE1571 6 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 57237713 Common - RrF2 family protein, putative CJE0963 139 COG1959 COG1959, Predicted transcriptional regulator Transcription 57237589 Common - hypothetical protein CJE0587 3 None None None 57237380 Common plsX fatty acid/phospholipid synthesis protein CJE0374 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 57237198 Common tig trigger factor CJE0186 215 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 57237290 Common - nicotinate phosphoribosyltransferase CJE0281 112 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 57237123 Common fabD acyl-carrier-protein S-malonyltransferase CJE0111 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 57237750 Common pebC amino acid ABC transporter, ATP-binding protein PEB1 CJE1000 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 57238417 Common - hypothetical protein CJE1565 61 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 57237275 Common - host-nuclease inhibitor protein Gam, putative CJE0265 7 COG4396 COG4396, Mu-like prophage host-nuclease inhibitor protein Gam General function prediction only 57238541 Common - molybdopterin converting factor, subunit 2 CJE1691 10 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 57237519 Common - hypothetical protein CJE0515 41 COG2346 COG2346, Truncated hemoglobins General function prediction only 57238148 Common - cell division protein FtsX, putative CJE1412 7 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 57238168 Pathogen - hypothetical protein CJE1432 1 None None None 57237369 Common fliF flagellar MS-ring protein CJE0363 127 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 57237179 Common - iron ABC transporter, permease protein CJE0167 127 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 57237569 Pathogen - hypothetical protein CJE0567 1 None None None 57237446 Common - hypothetical protein CJE0440 6 None None None 57237323 Common - hypothetical protein CJE0316 2 None None None 57237146 Common - McrBC restriction endonuclease system, McrB subunit, putative CJE0134 45 COG1401 McrB, GTPase subunit of restriction endonuclease Defense mechanisms 57238306 Pathogen - hypothetical protein CJE1447 1 None None None 57237232 Common - phage virion morphogenesis protein, putative CJE0221 3 None None None 57237160 Common - hypothetical protein CJE0148 5 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 57237512 Common miaB tRNA-i(6)A37 thiotransferase enzyme MiaB CJE0508 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 57237310 Common - hypothetical protein CJE0303 8 None None None 57238039 Common ldh L-lactate dehydrogenase CJE1301 146 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 57238265 Common oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD CJE0639 56 COG1146 COG1146, Ferredoxin Energy production and conversion 57238582 Common nuoK NADH-quinone oxidoreductase, K subunit CJE1740 16 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 57237289 Common - transferase, hexapeptide repeat family CJE0280 198 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 57237282 Common - transcriptional regulator, putative CJE0272 16 COG2932 COG2932, Predicted transcriptional regulator Transcription 57238660 Common - lipoprotein, putative CJE1821 2 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 57237973 Common leuS leucyl-tRNA synthetase CJE1234 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237811 Common - hypothetical protein CJE1066 30 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 57237909 Common - hypothetical protein CJE1166 25 COG2862 COG2862, Predicted membrane protein Function unknown 57236939 Common pyrG CTP synthetase CJE0027 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 57238626 Common - hypothetical protein CJE1785 15 COG0748 HugZ, Putative heme iron utilization protein Inorganic ion transport and metabolism 57237428 Common - 2-hydroxyacid dehydrogenase CJE0422 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 57237917 Common lepA GTP-binding protein LepA CJE1174 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 57237986 Common ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase CJE1247 98 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 57237672 Common trmA tRNA (uracil-5-)-methyltransferase CJE0918 151 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 57238573 Common - permease, putative CJE1730 88 COG0701 COG0701, Predicted permeases General function prediction only 57238045 Common - multidrug resistance protein, SMR family CJE1307 45 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 57237411 Common - folB domain protein CJE0405 2 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 57237558 Common - hypothetical protein CJE0556 9 None None None 57238021 Common waaV lipooligosaccharide biosynthesis glycosyltransferase CJE1282 97 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 57237362 Common rplY 50S ribosomal protein L25/general stress protein Ctc CJE0356 164 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 57238329 Common - phage terminase, large subunit, putative CJE1471 47 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 57237159 Common - hypothetical protein CJE0147 6 None None None 57238357 Pathogen - acyl carrier protein, putative CJE1499 1 None None None 57237216 Pathogen - hypothetical protein CJE0205 1 None None None 57237128 Common - hypothetical protein CJE0116 198 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 57237707 Common - thiol:disulfide interchange protein DsbA, putative CJE0954 18 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 57237726 Common pheS phenylalanyl-tRNA synthetase subunit alpha CJE0976 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 57237354 Common modA molybdenum ABC transporter, periplasmic molybdenum-binding protein CJE0348 128 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 57236966 Common - peptidase, M24 family CJE0756 197 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 57237774 Common - lipoprotein, putative CJE1024 23 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 57238655 Common ispA geranyltranstransferase CJE1816 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 57238032 Common dnaX DNA polymerase III subunits gamma and tau CJE1293 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 57238558 Common - tungstate ABC transporter, periplasmic tungstate-binding protein, putative CJE1711 61 COG2998 TupB, ABC-type tungstate transport system, permease component Coenzyme metabolism 57237867 Pathogen - hypothetical protein CJE1123 2 None None None 57237483 Pathogen - hypothetical protein CJE0477 1 None None None 57237268 Pathogen - hypothetical protein CJE0258 1 None None None 57238317 Common - major capsid protein, HK97 family CJE1458 54 COG4653 COG4653, Predicted phage phi-C31 gp36 major capsid-like protein General function prediction only 57237351 Common modC molybdenum ABC transporter, ATP-binding protein CJE0345 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 57237052 Pathogen - hypothetical protein CJE0037 1 None None None 57237687 Common - Ser/Thr protein phosphatase family protein CJE0933 86 COG1408 COG1408, Predicted phosphohydrolases General function prediction only 57237093 Common ung uracil-DNA glycosylase CJE0081 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 57237097 Pathogen - lipoprotein, putative CJE0085 1 COG5633 COG5633, Predicted periplasmic lipoprotein General function prediction only 57238598 Common - oxidoreductase, FAD-binding, iron-sulfur cluster-binding CJE1756 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 57238645 Common aroC chorismate synthase CJE1806 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 57238647 Common rnhA ribonuclease H CJE1808 174 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 57238518 Common - hypothetical protein CJE1668 11 COG2952 COG2952, Uncharacterized protein conserved in bacteria Function unknown 57237611 Common tdk thymidylate kinase CJE0857 195 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 57237536 Common - dihydrodipicolinate synthase, putative CJE0532 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 57238481 Common truD tRNA pseudouridine synthase D CJE1631 83 COG0585 COG0585, Uncharacterized conserved protein Function unknown 57238310 Pathogen - hypothetical protein CJE1451 1 None None None 57237202 Common dapB dihydrodipicolinate reductase CJE0190 215 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 57237981 Common pepF oligoendopeptidase F CJE1242 87 COG1164 COG1164, Oligoendopeptidase F Amino acid transport and metabolism 57238639 Common - hypothetical protein CJE1799 4 None None None 57237070 Common fliM flagellar motor switch protein FliM CJE0057 105 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 57238228 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CJE0679 168 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 57237836 Common - hypothetical protein CJE1091 2 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 57238637 Common sdaC serine transporter CJE1797 32 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 57236990 Common flgH flagellar basal body L-ring protein CJE0786 99 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 57237059 Common - hypothetical protein CJE0044 36 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 57237791 Common - hypothetical protein CJE1043 26 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 57237932 Common thiF thiamine biosynthesis protein ThiF CJE1190 224 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 57238506 Common - lipoprotein, putative CJE1656 5 None None None 57237077 Common - chlorohydrolase CJE0064 97 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 57238611 Common hisD histidinol dehydrogenase CJE1770 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 57238154 Common - site-specific recombinase, phage integrase family CJE1418 107 COG0582 XerC, Integrase DNA replication, recombination, and repair 57237646 Common mviN integral membrane protein MviN CJE0892 170 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 57237680 Common - hypothetical protein CJE0926 6 None None None 57237231 Common dam DNA adenine methylase CJE0220 96 COG0338 Dam, Site-specific DNA methylase DNA replication, recombination, and repair 57237580 Pathogen - hypothetical protein CJE0578 1 None None None 57238499 Common - pyruvate ferredoxin/flavodoxin oxidoreductase CJE1649 124 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 57237950 Common - membrane-associated zinc metalloprotease, putative CJE1211 209 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 57238521 Common purA adenylosuccinate synthetase CJE1671 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 57238354 Common - amino acid adenylation domain protein CJE1496 209 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 57237695 Common - hypothetical protein CJE0941 7 None None None 57237439 Common kdsA 2-dehydro-3-deoxyphosphooctonate aldolase CJE0433 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 57237936 Common - NAD-dependent deacetylase CJE1194 150 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 57237434 Common - putative sulfite oxidase subunit YedY CJE0428 126 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 57238219 Common folP dihydropteroate synthase CJE0688 217 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 57238339 Common - hypothetical protein CJE1481 28 None None None 57237406 Common fliN flagellar motor switch protein CJE0400 119 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 57237873 Pathogen - hypothetical protein CJE1129 1 None None None 57238246 Common - hypothetical protein CJE0658 19 None None None 57237021 Common - conserved hypothetical protein TIGR00044 CJE0819 197 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 57237150 Common - cation ABC transporter, periplasmic cation-binding protein CJE0138 167 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 57238321 Pathogen - hypothetical protein CJE1462 1 None None None 57238129 Common - hypothetical protein CJE1392 1 None None None 57237633 Common - hypothetical protein CJE0879 4 None None None 57238511 Common ccoQ cytochrome c oxidase, cbb3-type, subunit IV CJE1661 7 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 57236963 Common - GTPase EngB CJE0753 175 COG0218 COG0218, Predicted GTPase General function prediction only 57237395 Pathogen - hypothetical protein CJE0389 1 None None None 57237945 Pathogen - hypothetical protein CJE1203 1 None None None 57238451 Common kpsC capsule polysaccharide export protein KpsC CJE1601 30 COG3563 KpsC, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 57237941 Common - hydrolase, carbon-nitrogen family CJE1199 23 COG0388 COG0388, Predicted amidohydrolase General function prediction only 57238659 Common - ABC transporter, periplasmic substrate-binding protein, putative CJE1820 60 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 57238136 Common hydD hydrogenase maturation protease HydD CJE1400 54 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 57237386 Common flhB flagellar biosynthesis protein FlhB CJE0380 129 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 57237148 Common - cation ABC transporter, permease protein CJE0136 187 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 57238457 Common - hypothetical protein CJE1607 4 None None None 57237413 Common ccpA-2 cytochrome c551 peroxidase CJE0407 95 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 57237788 Common rnpA ribonuclease P protein component CJE1040 4 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 57237515 Common - transporter, putative CJE0511 34 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 57237571 Common - phage repressor protein, putative CJE0569 24 COG2932 COG2932, Predicted transcriptional regulator Transcription 57238594 Common - peptide ABC transporter, ATP-binding protein CJE1752 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 57238514 Common - DNA-binding response regulator CJE1664 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57237114 Common atpD F0F1 ATP synthase subunit beta CJE0102 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 57237549 Pathogen - hypothetical protein CJE0547 1 None None None 57238192 Common ftn nonheme iron-containing ferritin CJE0715 85 COG1528 Ftn, Ferritin-like protein Inorganic ion transport and metabolism 57238287 Common - hypothetical protein CJE0617 90 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 57237187 Common - putative transporter CJE0175 61 COG1133 SbmA, ABC-type long-chain fatty acid transport system, fused permease and ATPase components Lipid metabolism 57238494 Common ctsE general secretory pathway protein E CJE1644 176 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 57238065 Pathogen - hypothetical protein CJE1327 1 None None None 57237172 Common ubiA prenyltransferase CJE0160 165 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 57237522 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family CJE0518 156 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 57237607 Common aspC aspartate aminotransferase CJE0853 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 57238546 Pathogen - hypothetical protein CJE1698 1 None None None 57237781 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase CJE1033 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 57238280 Common - CrcB CJE0624 183 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 57236985 Pathogen - hypothetical protein CJE0780 1 None None None 57237477 Common - hypothetical protein CJE0471 4 None None None 57236901 Common - lipopolysaccharide core biosynthesis protien, putative CJE1884 8 None None None 57237307 Common - major facilitator superfamily protein CJE0300 133 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238431 Common - endoribonuclease L-PSP, putative CJE1579 180 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 57237448 Common - malate:quinone oxidoreductase, putative CJE0442 69 COG0579 COG0579, Predicted dehydrogenase General function prediction only 57238686 Common fliQ flagellar biosynthesis protein FliQ CJE1847 87 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 57237760 Common pckA phosphoenolpyruvate carboxykinase CJE1010 98 COG1866 PckA, Phosphoenolpyruvate carboxykinase (ATP) Energy production and conversion 57238217 Pathogen - hypothetical protein CJE0690 1 None None None 57237332 Common mreB cell shape-determining protein MreB CJE0325 235 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 57238538 Common nspC carboxynorspermidine decarboxylase CJE1688 54 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 57238496 Common ctsP transformation system protein CJE1646 4 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 57237853 Pathogen - hypothetical protein CJE1108 1 None None None 57238387 Common gcp O-sialoglycoprotein endopeptidase CJE1533 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 57237541 Common - hypothetical protein CJE0538 11 COG3254 COG3254, Uncharacterized conserved protein Function unknown 57237270 Pathogen - hypothetical protein CJE0260 1 None None None 57238241 Common - pyridine nucleotide-disulphide oxidoreductase family protein CJE0663 217 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 57238461 Common wcbK GDP-mannose 4,6-dehydratase CJE1611 227 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 57237139 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase CJE0127 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 57238026 Common waaD ADP-L-glycero-D-mannoheptose-6-epimerase CJE1287 232 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 57238216 Common tlyA hemolysin A CJE0691 130 COG1189 COG1189, Predicted rRNA methylase Translation, ribosomal structure and biogenesis 57237551 Pathogen - hypothetical protein CJE0549 1 None None None 57237755 Common apt adenine phosphoribosyltransferase CJE1005 170 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 57236894 Pathogen - hypothetical protein CJE1877 1 None None None 57236903 Common leuD 3-isopropylmalate dehydratase, small subunit CJE1886 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 57238727 Pathogen - hypothetical protein CJE1446 1 None None None 57237117 Common - TonB system transport protein ExbD, putative CJE0105 137 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 57237689 Common - FlhB domain protein CJE0935 120 COG2257 COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Function unknown 57238141 Common - N-acetylmuramoyl-L-alanine amidase CJE1405 183 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 57236998 Common ftsA cell division protein FtsA CJE0794 176 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 57237600 Pathogen - hypothetical protein CJE0846 1 None None None 57236943 Common - DNA polymerase III subunit delta CJE0733 8 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 57238673 Common - ABC transporter, permease protein CJE1834 19 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 57237682 Common mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB CJE0928 67 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 57238053 Common tsf elongation factor Ts CJE1315 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 57238165 Pathogen - hypothetical protein CJE1429 1 None None None 57237656 Common lpxK tetraacyldisaccharide 4'-kinase CJE0902 72 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 57237258 Pathogen - hypothetical protein CJE0248 2 None None None 57236956 Common - response regulator/GGDEF domain protein CJE0746 188 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 57237969 Common - peptidase, M23/M37 family CJE1230 189 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 57238299 Common - hypothetical protein CJE0604 10 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 57237086 Common cdtB cytolethal distending toxin, subunit B CJE0074 7 None None None 57238248 Common - hypothetical protein CJE0656 28 COG3819 COG3819, Predicted membrane protein Function unknown 57238171 Common - DNA-binding protein Roi CJE1435 27 COG3645 COG3645, Uncharacterized phage-encoded protein Function unknown 57238175 Common - hypothetical protein CJE1439 1 None None None 57237130 Common dusB tRNA-dihydrouridine synthase B CJE0118 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 57238562 Common - integral membrane protein CJE1715 9 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 57238362 Common - hypothetical protein CJE1504 3 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 57238183 Common hypF [NiFe] hydrogenase maturation protein HypF CJE0725 108 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 57238373 Common ptmC N-acetylneuraminic acid synthetase CJE1516 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 57237565 Pathogen - hypothetical protein CJE0563 1 None None None 57237843 Pathogen - hypothetical protein CJE1098 1 None None None 57237247 Common - baseplate assembly protein V, putative CJE0236 19 COG4540 gpV, Phage P2 baseplate assembly protein gpV General function prediction only 57237143 Common infB translation initiation factor IF-2 CJE0131 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 57237453 Common gatC aspartyl/glutamyl-tRNA amidotransferase subunit C CJE0447 31 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 57238367 Common hisH imidazole glycerol phosphate synthase subunit HisH CJE1510 215 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 57238093 Common groEL chaperonin GroEL CJE1356 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 57238403 Pathogen - hypothetical protein CJE1551 1 None None None 57236978 Common - ABC transporter, ATP-binding protein CJE0770 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 57237315 Pathogen - hypothetical protein CJE0308 1 None None None 57238254 Common - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative CJE0650 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 57237463 Common frdC fumarate reductase, cytochrome b subunit CJE0457 10 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 57237215 Pathogen - hypothetical protein CJE0204 1 None None None 57237263 Pathogen - tail protein X, putative CJE0253 1 COG5004 COG5004, P2-like prophage tail protein X General function prediction only 57238379 Common maf-1 motility accessory factor CJE1522 23 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 57236980 Common dcuB anaerobic C4-dicarboxylate transporter CJE0772 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 57238269 Common icd isocitrate dehydrogenase, NADP-dependent CJE0635 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 57237047 Common - hypothetical protein CJE0032 4 None None None 57238003 Common pglE general glycosylation pathway protein CJE1264 190 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 57238527 Common selD selenide, water dikinase CJE1677 118 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 57237312 Common xth exodeoxyribonuclease III CJE0305 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 57237624 Common tpx thiol peroxidase CJE0870 99 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 57237426 Common - hypothetical protein CJE0420 6 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 57237238 Common - major tail sheath protein CJE0227 31 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 57238132 Common dnaJ-2 co-chaperone protein DnaJ CJE1396 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 57238468 Common kpsD capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein CJE1618 62 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 57237962 Common hemD uroporphyrinogen-III synthase CJE1223 15 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 57236900 Pathogen - hypothetical protein CJE1883 1 None None None 57238010 Common pglH general glycosylation pathway protein CJE1271 172 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 57237091 Pathogen - hypothetical protein CJE0079 1 None None None 57238584 Common nuoI NADH dehydrogenase subunit I CJE1742 188 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 57237393 Pathogen - hypothetical protein CJE0387 1 None None None 57237674 Common - oxidoreductase, short chain dehydrogenase/reductase family CJE0920 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 57238479 Pathogen - hypothetical protein CJE1629 1 None None None 57237635 Common purU formyltetrahydrofolate deformylase CJE0881 219 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 57237280 Common - bacteriophage DNA transposition protein A, putative CJE0270 21 None None None 57237885 Common - hypothetical protein CJE1142 36 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 57237505 Common rpe ribulose-phosphate 3-epimerase CJE0501 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 57237481 Common - ABC transporter, ATP-binding protein CJE0475 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 57236911 Common metA homoserine O-succinyltransferase CJE1894 64 COG1897 MetA, Homoserine trans-succinylase Amino acid transport and metabolism 57237287 Common argD acetylornithine aminotransferase CJE0278 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 57237975 Common secD preprotein translocase subunit SecD CJE1236 219 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 57236933 Common - fumarylacetoacetate hydrolase family protein CJE0021 169 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 57237813 Pathogen - hypothetical protein CJE1068 1 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 57238729 Common flaB flagellin CJE1526 121 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 57237984 Common truB tRNA pseudouridine synthase B CJE1245 232 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 57237701 Common - integral membrane protein CJE0947 47 None None None 57237166 Pathogen - cytochrome c family protein CJE0154 1 COG2863 COG2863, Cytochrome c553 Energy production and conversion 57237493 Common sdhA succinate dehydrogenase, flavoprotein subunit CJE0488 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 57238707 Common rplP 50S ribosomal protein L16 CJE1868 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 57238097 Common - hypothetical protein CJE1360 4 COG4710 COG4710, Predicted DNA-binding protein with an HTH domain General function prediction only 57238513 Common ccoN cytochrome c oxidase, cbb3-type, subunit I CJE1663 153 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 57237177 Common - saccharopine dehydrogenase CJE0165 54 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 57237375 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase CJE0369 211 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 57237121 Common - hypothetical protein CJE0109 11 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 57238303 Pathogen - hypothetical protein CJE0600 1 None None None 57238030 Common - heavy metal translocating P-type ATPase CJE1291 228 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 57238118 Pathogen - hypothetical protein CJE1381 1 None None None 57236929 Common - disulfide bond formation protein, DsbB family CJE0017 8 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 57237923 Common accC-1 acetyl-CoA carboxylase CJE1181 232 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 57237061 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase CJE0048 215 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 57238359 Common - hypothetical protein CJE1501 3 None None None 57238239 Common dnaB replicative DNA helicase CJE0667 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 57237132 Common - dnaK suppressor protein, putative CJE0120 113 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 57238613 Common hisH imidazole glycerol phosphate synthase subunit HisH CJE1772 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 57238530 Common - ModE repressor domain protein CJE1680 54 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 57238719 Pathogen - hypothetical protein CJE0596 1 None None None 57237617 Common - lipoprotein, NLPA family CJE0863 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 57237273 Pathogen - hypothetical protein CJE0263 1 None None None 57238392 Common - fibronectin/fibrinogen binding protein, putative CJE1538 51 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 57237839 Common - site-specific recombinase, phage integrase family CJE1094 106 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 57238427 Common - hypothetical protein CJE1575 11 COG4378 COG4378, Uncharacterized protein conserved in bacteria Function unknown 57237736 Pathogen - hypothetical protein CJE0986 1 None None None 57238347 Common - acyl carrier protein, putative CJE1489 5 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 57237360 Common - multidrug resistance protein, SMR family CJE0354 124 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 57237072 Common - hypothetical protein CJE0059 4 None None None 57238122 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein CJE1385 240 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 57237631 Pathogen - hypothetical protein CJE0877 1 None None None 57238445 Common fliL flagellar basal body-associated protein FliL CJE1595 36 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 57238232 Common ribB bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein CJE0675 229 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 57238421 Common selA selenocysteine synthase CJE1569 64 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 57238206 Common - hypothetical protein CJE0701 24 COG4372 COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain Function unknown 57237648 Common - ABC transporter, ATP-binding protein/permease MsbA, putative CJE0894 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 57237309 Common moaC molybdenum cofactor biosynthesis protein C CJE0302 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 57237292 Common - hypothetical protein CJE0283 4 COG1714 COG1714, Predicted membrane protein/domain Function unknown 57237204 Common - hypothetical protein CJE0192 7 None None None 57237890 Pathogen - hypothetical protein CJE1147 1 None None None 57238433 Common purB-2 adenylosuccinate lyase CJE1582 229 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 57237300 Common - cysteine desulfurase CJE0291 240 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 57238618 Common - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative CJE1777 109 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 57238628 Common - hemin ABC transporter, permease protein, putative CJE1787 192 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 57238037 Common - hypothetical protein CJE1299 17 COG3610 COG3610, Uncharacterized conserved protein Function unknown 57237930 Common thiH thiamine biosynthesis protein ThiH CJE1188 57 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 57237897 Pathogen - hypothetical protein CJE1154 1 None None None 57238696 Common rplO 50S ribosomal protein L15 CJE1857 66 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 57237718 Common - sensor histidine kinase CJE0968 208 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 57237821 Common ribA GTP cyclohydrolase II CJE1076 172 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 57236940 Common recJ single-stranded-DNA-specific exonuclease RecJ CJE0028 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 57236931 Common - methyl-accepting chemotaxis protein CJE0019 75 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57237808 Common cjaB transport protein CjaB CJE1063 133 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238474 Common - deoxyuridine triphosphatase domain protein CJE1624 11 None None None 57237266 Common dns extracellular deoxyribonuclease CJE0256 27 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 57236961 Common - hypothetical protein CJE0751 1 None None None 57237404 Common trpA tryptophan synthase subunit alpha CJE0398 217 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 57238134 Common racS sensor histidine kinase CJE1398 161 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 57237168 Common - radical SAM domain protein CJE0156 78 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 57238102 Common - transcriptional regulator, MerR family CJE1365 94 COG0789 SoxR, Predicted transcriptional regulators Transcription 57238591 Common nuoB NADH dehydrogenase subunit B CJE1749 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 57238630 Common - hemin ABC transporter, periplasmic hemin-binding protein, putative CJE1789 119 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 57238105 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein CJE1368 146 COG0546 Gph, Predicted phosphatases General function prediction only 57237261 Common - prophage MuSo1, F protein, putative CJE0251 27 COG2369 COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 Function unknown 57237391 Common - inosine-uridine preferring nucleoside hydrolase family protein CJE0385 82 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 57237014 Common rimM 16S rRNA processing protein RimM CJE0812 57 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 57238207 Common fbaA fructose-bisphosphate aldolase CJE0700 172 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 57237662 Common glmU UDP-N-acetylglucosamine pyrophosphorylase CJE0908 220 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 57238315 Pathogen - hypothetical protein CJE1456 1 None None None 57237016 Common rplS 50S ribosomal protein L19 CJE0814 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 57238327 Common - portal protein, HK97 family CJE1469 67 COG4695 COG4695, Phage-related protein Function unknown 57237724 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase CJE0974 228 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 57237220 Pathogen - hypothetical protein CJE0209 1 None None None 57236922 Common gltD glutamate synthase subunit beta CJE0008 198 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 57238440 Common gapA glyceraldehyde 3-phosphate dehydrogenase A CJE1590 219 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 57237857 Pathogen - hypothetical protein CJE1112 2 None None None 57237005 Common purE phosphoribosylaminoimidazole carboxylase catalytic subunit CJE0802 231 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 57237741 Common hup DNA-binding protein HU CJE0991 199 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 57237848 Common - hypothetical protein CJE1103 28 COG3041 COG3041, Uncharacterized protein conserved in bacteria Function unknown 57237367 Common pheA chorismate mutase/prephenate dehydratase CJE0361 214 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 57237378 Common - endoribonuclease L-PSP family protein CJE0372 122 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 57237828 Common - rhomboid family protein CJE1083 151 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 57237693 Common - hypothetical protein CJE0939 7 COG5336 COG5336, Uncharacterized protein conserved in bacteria Function unknown 57238483 Common - hypothetical protein CJE1633 5 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 57237054 Pathogen - hypothetical protein CJE0039 1 None None None 57236992 Common ackA acetate kinase CJE0788 162 COG0282 ackA, Acetate kinase Energy production and conversion 57238649 Common dnaG DNA primase CJE1810 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 57237210 Common thrS threonyl-tRNA synthetase CJE0199 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57238040 Common - DedA family protein CJE1302 168 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 57237227 Pathogen - hypothetical protein CJE0216 1 None None None 57237711 Common - hypothetical protein CJE0961 10 COG2404 COG2404, Predicted phosphohydrolase (DHH superfamily) General function prediction only 57238657 Common - ABC transporter, permease protein, putative CJE1818 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 57237956 Common - lipoprotein, putative CJE1217 9 COG4105 ComL, DNA uptake lipoprotein General function prediction only 57237095 Common dcuA anaerobic C4-dicarboxylate transporter CJE0083 36 COG2704 DcuB, Anaerobic C4-dicarboxylate transporter General function prediction only 57237793 Common - thioesterase family protein CJE1045 112 COG0824 FcbC, Predicted thioesterase General function prediction only 57238551 Common - hypothetical protein CJE1704 6 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 57237825 Common - transcriptional regulator, LysR family CJE1080 162 COG0583 LysR, Transcriptional regulator Transcription 57237366 Common - HAD-superfamily hydrolase, subfamily IIA CJE0360 75 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 57237200 Common fliI flagellum-specific ATP synthase CJE0188 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 57236960 Common - phosphatase, YrbI family CJE0750 101 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 57236897 Common ksgA dimethyladenosine transferase CJE1880 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 57238524 Common - hypothetical protein CJE1674 32 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 57237480 Pathogen - lipoprotein, putative CJE0474 1 None None None 57237303 Common rplT 50S ribosomal protein L20 CJE0295 213 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 57238324 Pathogen - hypothetical protein CJE1465 1 None None None 57238201 Common dsbD thiol:disulfide interchange protein DsbD CJE0706 97 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 57237416 Common lspA lipoprotein signal peptidase CJE0410 161 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 57237692 Common - hypothetical protein CJE0938 2 None None None 57238643 Pathogen - hypothetical protein CJE1804 1 None None None 57238665 Common nhaA-1 Na+/H+ antiporter NhaA CJE1826 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 57237790 Common - acetyltransferase, GNAT family CJE1042 63 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 57238036 Common - hypothetical protein CJE1298 34 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 57237180 Common - iron ABC transporter, periplasmic iron-binding protein CJE0168 139 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 57237795 Pathogen - hypothetical protein CJE1048 1 None None None 57237641 Common - hypothetical protein CJE0887 15 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 57237167 Common - 6-pyruvoyl tetrahydrobiopterin synthase, homolog CJE0155 37 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 57237213 Pathogen - hypothetical protein CJE0202 1 None None None 57238133 Common racR DNA-binding response regulator CJE1397 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57237020 Common dnaE DNA polymerase III subunit alpha CJE0818 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 57237350 Common - beta-lactamase CJE0344 38 COG2602 COG2602, Beta-lactamase class D Defense mechanisms 57237709 Pathogen - hypothetical protein CJE0959 1 None None None 57238332 Pathogen - hypothetical protein CJE1474 1 None None None 57238108 Common - hypothetical protein CJE1371 46 COG1565 COG1565, Uncharacterized conserved protein Function unknown 57238059 Common arsB arsenical pump membrane protein CJE1321 83 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 57238596 Common - peptide ABC transporter, permease protein CJE1754 209 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 57237384 Common - ferredoxin, 4Fe-4S CJE0378 104 COG1142 HycB, Fe-S-cluster-containing hydrogenase components 2 Energy production and conversion 57236912 Common metX homoserine O-acetyltransferase CJE1895 207 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 57237357 Common bioF 8-amino-7-oxononanoate synthase CJE0351 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 57237527 Common nusG transcription antitermination protein NusG CJE0523 215 COG0250 NusG, Transcription antiterminator Transcription 57237749 Common pebA bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein CJE0999 160 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 57237640 Common - Mur ligase family protein CJE0886 168 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 57238398 Pathogen - hypothetical protein CJE1545 2 COG3295 COG3295, Uncharacterized protein conserved in bacteria Function unknown 57238516 Common - hypothetical protein CJE1666 44 COG2836 COG2836, Uncharacterized conserved protein Function unknown 57238633 Common - hypothetical protein CJE1793 4 None None None 57237153 Common - hypothetical protein CJE0141 77 COG3211 PhoX, Predicted phosphatase General function prediction only 57237342 Common greA transcription elongation factor GreA CJE0335 204 COG0782 GreA, Transcription elongation factor Transcription 57237752 Common cheB protein-glutamate methylesterase CheB CJE1002 140 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 57237222 Pathogen - pathogenicity domain protein CJE0211 1 None None None 57238043 Common ppiB peptidyl-prolyl cis-trans isomerase B CJE1305 165 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 57237401 Common trpD anthranilate synthase component II CJE0395 238 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 57237744 Common - hypothetical protein CJE0994 12 COG2879 COG2879, Uncharacterized small protein Function unknown 57237996 Common pssA CDP-diacylglycerol--serine O-phosphatidyltransferase CJE1257 156 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 57237027 Common mogA molybdenum cofactor biosynthesis protein CJE0825 189 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 57237924 Common - cell division protein, FtsW/RodA/SpoVE family CJE1182 205 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 57238125 Common - hypothetical protein CJE1388 14 COG1714 COG1714, Predicted membrane protein/domain Function unknown 57238101 Common dnaJ-1 co-chaperone protein DnaJ CJE1364 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 57238650 Common - NifU family protein CJE1811 83 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 57237012 Common rpsP 30S ribosomal protein S16 CJE0810 210 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 57237025 Common - peptidase, M48 family CJE0823 95 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 57237019 Common - hypothetical protein CJE0817 30 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 57237716 Common - flagellar hook-associated protein CJE0966 87 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 57237489 Common pgm phosphoglyceromutase CJE0484 126 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 57238226 Common tatC Sec-independent protein translocase TatC CJE0681 205 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 57238614 Common hisA phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CJE1773 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 57237398 Pathogen - hypothetical protein CJE0392 1 None None None 57238565 Common - oxidoreductase, zinc-binding dehydrogenase family CJE1719 204 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 57236932 Common ccpA-1 cytochrome c551 peroxidase CJE0020 93 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 57236928 Common - ExsB CJE0016 178 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 57237169 Common moaA molybdenum cofactor biosynthesis protein A CJE0157 201 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 57237851 Pathogen - hypothetical protein CJE1106 1 None None None 57237731 Common - amino acid ABC transporter, ATP-binding protein CJE0981 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 57238426 Common - hypothetical protein CJE1574 2 None None None 57237738 Common - hypothetical protein CJE0988 2 None None None 57237127 Common - hypothetical protein CJE0115 7 None None None 57237370 Common fliG flagellar motor switch protein G CJE0364 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 57238236 Common - GTP-binding protein CJE0670 12 COG3597 COG3597, Uncharacterized protein/domain associated with GTPases Function unknown 57237099 Common - hypothetical protein CJE0087 6 None None None 57238600 Common - multidrug transporter membrane component/ATP-binding component CJE1758 249 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 57238534 Common fdhA formate dehydrogenase, alpha subunit, selenocysteine-containing CJE1684 190 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 57237668 Common truA tRNA pseudouridine synthase A CJE0914 226 COG0101 TruA, Pseudouridylate synthase Translation, ribosomal structure and biogenesis 57237064 Pathogen - hypothetical protein CJE0051 1 None None None 57236994 Common - hypothetical protein CJE0790 3 None None None 57237293 Common pyrE orotate phosphoribosyltransferase CJE0284 96 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 57238578 Common pflA paralyzed flagella protein PflA CJE1736 4 None None None 57238115 Pathogen - hypothetical protein CJE1378 1 None None None 57237817 Common hemN coproporphyrinogen III oxidase CJE1072 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 57237338 Common cheW purine-binding chemotaxis protein CheW CJE0331 128 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 57237773 Common - hypothetical protein CJE1023 23 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 57237614 Common flgA flagellar basal body P-ring biosynthesis protein FlgA CJE0860 5 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 57237279 Common - bacteriophage DNA transposition protein B, putative CJE0269 21 COG2842 COG2842, Uncharacterized ATPase, putative transposase General function prediction only 57237723 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CJE0973 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 57237539 Common fucP L-fucose permease CJE0536 49 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 57237876 Pathogen - hypothetical protein CJE1132 2 None None None 57237192 Common purN phosphoribosylglycinamide formyltransferase CJE0180 218 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 57238477 Common yliG MiaB-like tRNA modifying enzyme YliG, TIGR01125 CJE1627 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 57238620 Common ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein CJE1779 196 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 57238013 Common wlaX polysaccharide biosynthesis protein CJE1274 34 COG3298 COG3298, Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA replication, recombination, and repair 57238072 Common - lipoprotein, NLPA family CJE1334 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 57236934 Common - RNA pseudouridylate synthase family protein CJE0022 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 57237327 Common - antioxidant, AhpC/Tsa family CJE0320 229 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 57237778 Pathogen - heat shock protein HslJ, putative CJE1028 2 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 57237594 Pathogen - hypothetical protein CJE0592 1 None None None 57237700 Pathogen - hypothetical protein CJE0946 1 None None None 57237308 Pathogen - hypothetical protein CJE0301 1 None None None 57238019 Common - lipooligosaccharide biosynthesis galactosyltransferase, putative CJE1280 202 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 57237904 Common livH high affinity branched-chain amino acid ABC transporter, permease protein CJE1161 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 57238092 Common groES co-chaperonin GroES CJE1355 215 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 57238273 Common flgC flagellar basal body rod protein FlgC CJE0631 124 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 57237928 Common - transcriptional regulator, AraC family CJE1186 79 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 57237207 Pathogen - hypothetical protein CJE0195 2 None None None 57238712 Common rplW 50S ribosomal protein L23 CJE1873 102 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 57237628 Common napB periplasmic nitrate reductase, small subunit CJE0874 41 COG3043 NapB, Nitrate reductase cytochrome c-type subunit Energy production and conversion 57238135 Common recR recombination protein RecR CJE1399 203 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 57238002 Common pglF general glycosylation pathway protein CJE1263 170 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 57238544 Common cas2 CRISPR-associated protein Cas2 CJE1694 20 COG3512 COG3512, Uncharacterized protein conserved in bacteria Function unknown 57237423 Common - transcriptional regulator, TetR family CJE0417 40 COG1309 AcrR, Transcriptional regulator Transcription 57237583 Pathogen - hypothetical protein CJE0581 1 None None None 57237555 Pathogen - hypothetical protein CJE0553 1 None None None 57237377 Common serC phosphoserine aminotransferase CJE0371 111 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 57238147 Common - peptidase, M23/M37 family CJE1411 58 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 57238163 Pathogen - hypothetical protein CJE1427 1 None None None 57237502 Common - methyl-accepting chemotaxis protein CJE0498 78 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57237532 Common rpoB DNA-directed RNA polymerase subunit beta CJE0528 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 57237863 Pathogen - hypothetical protein CJE1118 1 None None None 57238184 Common - hypothetical protein CJE0724 6 COG0068 HypF, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 57238294 Common hemH ferrochelatase CJE0610 165 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 57237591 Pathogen - hypothetical protein CJE0589 1 None None None 57238412 Common - hypothetical protein CJE1560 83 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 57238270 Common - hypothetical protein CJE0634 12 None None None 57238292 Common - DegT/DnrJ/EryC1/StrS aminotransferase family CJE0612 201 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 57238066 Common - phosphate transporter family protein CJE1328 173 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 57237958 Common proC pyrroline-5-carboxylate reductase CJE1219 205 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 57238419 Common - multidrug resistance efflux transporter, putative CJE1567 145 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238070 Common luxS S-ribosylhomocysteinase CJE1332 55 COG1854 LuxS, LuxS protein involved in autoinducer AI2 synthesis Signal transduction mechanisms 57237046 Common - type II restriction-modification enzyme CJE0031 71 COG1002 COG1002, Type II restriction enzyme, methylase subunits Defense mechanisms 57238472 Common - hypothetical protein CJE1622 18 COG3787 COG3787, Uncharacterized protein conserved in bacteria Function unknown 57238077 Common radA DNA repair protein RadA CJE1339 206 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 57237965 Common - endonuclease III, putative CJE1226 70 COG2231 COG2231, Uncharacterized protein related to Endonuclease III DNA replication, recombination, and repair 57237228 Common - hypothetical protein CJE0217 2 None None None 57236986 Pathogen - hypothetical protein CJE0781 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 57238532 Common fdhC formate dehydrogenase, cytochrome b subunit CJE1682 66 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 57237759 Common argH argininosuccinate lyase CJE1009 217 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 57238301 Pathogen - hypothetical protein CJE0602 1 None None None 57237155 Common trx thioredoxin CJE0143 235 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 57237285 Common - acetyltransferase, GNAT family CJE0276 34 COG0456 RimI, Acetyltransferases General function prediction only 57237245 Common - baseplate assembly protein W, putative CJE0234 21 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 57238081 Common - hypothetical protein CJE1343 77 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 57237469 Common - hypothetical protein CJE0463 17 None None None 57237074 Common flhF flagellar biosynthesis regulator FlhF CJE0061 247 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 57237219 Pathogen - hypothetical protein CJE0208 1 None None None 57237108 Common - chromosome partitioning protein, ParB family CJE0096 183 COG1475 Spo0J, Predicted transcriptional regulators Transcription 57238360 Common - aminoglycoside N3-acetyltransferase domain protein CJE1502 4 COG2746 COG2746, Aminoglycoside N3'-acetyltransferase Defense mechanisms 57238684 Common recA recombinase A CJE1845 238 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 57237454 Common - cvpA family protein CJE0448 7 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 57238670 Common - hypothetical protein CJE1831 25 COG3470 Tpd, Uncharacterized protein probably involved in high-affinity Fe2+ transport Inorganic ion transport and metabolism 57238405 Common - hypothetical protein CJE1553 2 None None None 57238350 Common - 3-oxoacyl-(acyl carrier protein) synthase III CJE1492 196 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 57237068 Common - peptidase family protein CJE0055 15 COG3271 COG3271, Predicted double-glycine peptidase General function prediction only 57238243 Common - hypothetical protein CJE0661 19 COG1289 COG1289, Predicted membrane protein Function unknown 57237832 Common - mechanosensitive ion channel family protein CJE1087 34 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 57238668 Pathogen - hypothetical protein CJE1829 1 None None None 57237799 Pathogen - hypothetical protein CJE1052 1 None None None 57237842 Pathogen - hypothetical protein CJE1097 1 None None None 57236975 Common argG argininosuccinate synthase CJE0767 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 57237684 Common - soluble lytic murein transglycosylase, putative CJE0930 114 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 57236909 Common - 7-cyano-7-deazaguanine reductase CJE1892 90 COG0780 COG0780, Enzyme related to GTP cyclohydrolase I General function prediction only 57236905 Common leuB 3-isopropylmalate dehydrogenase CJE1888 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 57237088 Common - hypothetical protein CJE0076 8 None None None 57237658 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase CJE0904 137 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 57238374 Common neuC UDP-N-acetylglucosamine 2-epimerase CJE1517 44 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 57236953 Common aspS aspartyl-tRNA synthetase CJE0743 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237031 Common - hypothetical protein CJE0829 17 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 57238176 Common - signal peptidase I, putative CJE1440 6 COG2932 COG2932, Predicted transcriptional regulator Transcription 57237081 Common - hypothetical protein CJE0069 69 COG1556 COG1556, Uncharacterized conserved protein Function unknown 57237110 Common - F0F1 ATP synthase subunit B CJE0098 7 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 57237855 Pathogen - hypothetical protein CJE1110 2 None None None 57238607 Common rpsD 30S ribosomal protein S4 CJE1766 245 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 57237914 Common gyrA DNA gyrase subunit A CJE1171 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 57237862 Common - hypothetical protein CJE1117 2 COG3675 COG3675, Predicted lipase Lipid metabolism 57237115 Common atpC F0F1 ATP synthase subunit epsilon CJE0103 145 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 57237887 Pathogen - hypothetical protein CJE1144 1 None None None 57238215 Common - bifunctional riboflavin kinase/FMN adenylyltransferase CJE0692 209 COG0196 RibF, FAD synthase Coenzyme metabolism 57237651 Common dapA dihydrodipicolinate synthase CJE0897 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 57237637 Common - hypothetical protein CJE0883 8 None None None 57237500 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha CJE0495 179 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 57238447 Common - hypothetical protein CJE1597 3 None None None 57237171 Common - hypothetical protein CJE0159 3 None None None 57236946 Common - hypothetical protein CJE0736 55 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 57237135 Common - Inositol monophosphatase family protein CJE0123 61 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 57238346 Common - hypothetical protein CJE1488 8 COG2746 COG2746, Aminoglycoside N3'-acetyltransferase Defense mechanisms 57238052 Common - ABC transporter, ATP-binding protein CJE1314 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 57237253 Pathogen - hypothetical protein CJE0243 2 None None None 57237340 Common cheV chemotaxis protein CheV CJE0333 177 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 57237579 Common - terminase B protein, putative CJE0577 14 None None None 57237575 Pathogen - hypothetical protein CJE0573 1 None None None 57236983 Common uvrB excinuclease ABC subunit B CJE0778 227 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 57236895 Common - RNA pseudouridylate synthase family protein CJE1878 204 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 57238196 Common - outer membrane efflux protein CJE0711 87 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 57238238 Pathogen - hypothetical protein CJE0668 1 None None None 57237441 Common engA GTP-binding protein EngA CJE0435 226 COG1160 COG1160, Predicted GTPases General function prediction only 57238150 Common trmB tRNA (guanine-N(7))-methyltransferase CJE1414 140 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 57237542 Common aldA aldehyde dehydrogenase A CJE0539 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 57238363 Common neuA CMP-N-acetylneuraminic acid synthetase CJE1506 89 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 57236904 Common leuC isopropylmalate isomerase large subunit CJE1887 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 57237880 Pathogen - hypothetical protein CJE1136 2 None None None 57238542 Common - hypothetical protein CJE1692 5 None None None 57237333 Common - rod shape-determining protein MreC CJE0326 15 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 57237298 Common - mechanosensitive ion channel family protein CJE0289 174 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 57237767 Common - hypothetical protein CJE1017 6 None None None 57237145 Common - hypothetical protein CJE0133 156 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 57237462 Common lgt prolipoprotein diacylglyceryl transferase CJE0456 206 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 57238009 Common pglI general glycosylation pathway protein CJE1270 195 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 57238024 Common gmhA-1 phosphoheptose isomerase CJE1285 124 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 57237236 Pathogen - hypothetical protein CJE0225 1 None None None 57237470 Common - oxidoreductase, putative CJE0464 73 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 57238588 Common - hypothetical protein CJE1746 6 None None None 57237521 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family CJE0517 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 57237165 Pathogen - hypothetical protein CJE0153 1 None None None 57238693 Common topA DNA topoisomerase I CJE1854 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 57238164 Pathogen - hypothetical protein CJE1428 1 None None None 57238437 Common fabI enoyl-(acyl carrier protein) reductase CJE1587 222 COG0623 FabI, Enoyl- acyl-carrier-protein 57238460 Common - capsular biosynthesis sugar kinase, putative CJE1610 34 COG2605 COG2605, Predicted kinase related to galactokinase and mevalonate kinase General function prediction only 57238459 Common gmhA-2 phosphoheptose isomerase CJE1609 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 57237991 Common aat leucyl/phenylalanyl-tRNA--protein transferase CJE1252 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 57237604 Common dnaK molecular chaperone DnaK CJE0850 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 57238465 Common - capsular polysaccharide biosynthesis glycosyltransferase WcbB, putative CJE1615 85 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 57236959 Common rlpA rare lipoprotein A CJE0749 137 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 57238131 Common porA major outer membrane protein CJE1395 3 None None None 57238172 Pathogen - hypothetical protein CJE1436 1 None None None 57238454 Common - capsular polysaccharide biosynthesis protein, putative CJE1604 24 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 57237381 Common rpmF 50S ribosomal protein L32 CJE0375 7 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 57237786 Common - putative inner membrane protein translocase component YidC CJE1038 215 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 57237676 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase CJE0922 221 COG1049 AcnB, Aconitase B Energy production and conversion 57237042 Pathogen - hypothetical protein CJE0841 1 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 57237318 Common - hypothetical protein CJE0311 27 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 57238583 Common nuoJ NADH dehydrogenase subunit J CJE1741 42 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 57236952 Common adk adenylate kinase CJE0742 228 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 57238224 Common - coproporphyrinogen III oxidase CJE0683 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 57238212 Pathogen - hypothetical protein CJE0695 1 None None None 57238107 Common - peptidase, M23/M37 family CJE1370 192 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 57238145 Common rpoZ DNA-directed RNA polymerase subunit omega CJE1409 8 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 57237001 Common flgG flagellar basal body rod protein FlgG CJE0797 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 57237939 Common - hypothetical protein CJE1197 2 None None None 57238127 Common pnp polynucleotide phosphorylase/polyadenylase CJE1390 233 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 57238714 Common flaA flagellin CJE1528 119 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 57237487 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase CJE0482 210 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 57237702 Common pabA para-aminobenzoate synthase glutamine amidotransferase, component II CJE0948 240 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 57237529 Common rplA 50S ribosomal protein L1 CJE0525 237 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 57237994 Common msrB methionine sulfoxide reductase B CJE1255 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 57238443 Pathogen - hypothetical protein CJE1593 2 None None None 57238677 Common - hypothetical protein CJE1838 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 57237008 Common - hypothetical protein CJE0806 31 COG1579 COG1579, Zn-ribbon protein, possibly nucleic acid-binding General function prediction only 57237076 Common aroQ 3-dehydroquinate dehydratase CJE0063 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 57238554 Common galU UTP-glucose-1-phosphate uridylyltransferase CJE1707 229 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 57237671 Common - hypothetical protein CJE0917 3 COG3399 COG3399, Uncharacterized protein conserved in bacteria Function unknown 57237435 Pathogen - hypothetical protein CJE0429 1 None None None 57238057 Common petB ubiquinol--cytochrome c reductase, cytochrome b subunit CJE1319 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 57238603 Common infA translation initiation factor IF-1 CJE1762 213 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 57238567 Common - MloA protein, putative CJE1723 101 COG3177 COG3177, Uncharacterized conserved protein Function unknown 57238616 Common hisF-2 imidazole glycerol phosphate synthase subunit HisF CJE1775 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 57237224 Pathogen - hypothetical protein CJE0213 1 None None None 57237747 Common - amino acid ABC transporter, permease protein PEB1 CJE0997 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 57238380 Common maf-2 motility accessory factor CJE1523 17 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 57236972 Common hslU ATP-dependent protease ATP-binding subunit CJE0764 209 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 57237586 Common - hypothetical protein CJE0584 4 None None None 57237686 Common gltX glutamyl-tRNA synthetase CJE0932 243 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 57238498 Pathogen ctsR transformation system protein CJE1648 1 None None None 57237010 Common - RNA pseudouridylate synthase family protein CJE0808 214 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 57237746 Common prsA ribose-phosphate pyrophosphokinase CJE0996 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 57237364 Common - hypothetical protein CJE0358 19 COG0795 COG0795, Predicted permeases General function prediction only 57237023 Common - hypothetical protein CJE0821 6 None None None 57238720 Pathogen - hypothetical protein CJE0599 1 None None None 57237916 Pathogen mapA outer membrane liproprotein MapA CJE1173 1 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 57237784 Common trmE tRNA modification GTPase TrmE CJE1036 223 COG0486 ThdF, Predicted GTPase General function prediction only 57237056 Common flgD flagellar basal body rod modification protein CJE0041 92 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 57238635 Pathogen - hypothetical protein CJE1795 1 None None None 57238391 Pathogen - hypothetical protein CJE1537 1 None None None 57237305 Common - hypothetical protein CJE0298 47 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 57238704 Common rplN 50S ribosomal protein L14 CJE1865 247 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 57237643 Common ddl D-alanyl-alanine synthetase A CJE0889 211 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 57237418 Common - coproporphyrinogen III oxidase CJE0412 194 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 57236913 Common flgE flagellar hook protein FlgE CJE1896 133 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 57238322 Pathogen - hypothetical protein CJE1463 1 None None None 57237430 Common - lipoprotein, putative CJE0424 6 None None None 57237690 Common - hypothetical protein CJE0936 14 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 57237596 Common - hypothetical protein CJE0594 7 None None None 57237810 Pathogen jlpA surface-exposed lipoprotein CJE1065 5 None None None 57236996 Common mraW S-adenosyl-methyltransferase MraW CJE0792 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 57237666 Common - peptidase, A24 family CJE0912 39 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 57237878 Pathogen - hypothetical protein CJE1134 2 None None None 57237705 Common dsbA thiol:disulfide interchange protein DsbA CJE0951 29 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 57237264 Common - tail protein D, putative CJE0254 35 COG3500 COG3500, Phage protein D General function prediction only 57237797 Pathogen - hypothetical protein CJE1050 1 None None None 57237356 Common - hypothetical protein CJE0350 10 COG2830 COG2830, Uncharacterized protein conserved in bacteria Function unknown 57237612 Common coaD phosphopantetheine adenylyltransferase CJE0858 209 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 57237233 Common - tail tape measure protein, TP901 family CJE0222 27 COG5283 COG5283, Phage-related tail protein Function unknown 57237728 Common thiJ 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme CJE0978 80 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 57237948 Common - acetyltransferase, GNAT family CJE1206 17 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 57238313 Pathogen - phage head-tail adaptor, putative CJE1454 1 None None None 57237621 Pathogen - hypothetical protein CJE0867 1 COG2433 COG2433, Uncharacterized conserved protein Function unknown 57237408 Common - phosphatase, Ppx/GppA family CJE0402 182 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 57237544 Common rpsG 30S ribosomal protein S7 CJE0541 221 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 57238179 Common hypE hydrogenase expression/formation protein HypE CJE0729 113 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 57238580 Common nuoM NADH-quinone oxidoreductase, M subunit CJE1738 202 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 57237840 Common - hypothetical protein CJE1095 2 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 57238475 Common - hypothetical protein CJE1625 5 None None None 57237456 Common lysS lysyl-tRNA synthetase CJE0450 249 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 57238334 Common - potassium uptake protein TrkA, putative CJE1476 119 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 57238710 Common rpsS 30S ribosomal protein S19 CJE1871 242 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 57238622 Common - ATP-sulfurylase family protein CJE1781 53 COG2046 MET3, ATP sulfurylase (sulfate adenylyltransferase) Inorganic ion transport and metabolism 57237194 Common - hypothetical protein CJE0182 77 COG1432 COG1432, Uncharacterized conserved protein Function unknown 57237776 Common - cation efflux family protein CJE1026 202 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 57237283 Pathogen - hypothetical protein CJE0273 1 None None None 57238510 Common ccoP cytochrome c oxidase, cbb3-type, subunit III CJE1660 76 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 57238627 Common chuA TonB-dependent heme receptor CJE1786 118 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 57237421 Common cmeB RND efflux system, inner membrane transporter CmeB CJE0415 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 57236936 Common nrdA ribonucleotide-diphosphate reductase subunit alpha CJE0024 218 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 57237891 Pathogen - hypothetical protein CJE1148 2 None None None 57237989 Common - hypothetical protein CJE1250 120 COG2127 COG2127, Uncharacterized conserved protein Function unknown 57237626 Common napG quinol dehydrogenase periplasmic component CJE0872 61 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 57236937 Common - sodium/dicarboxylate symporter CJE0025 143 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 57238061 Common - methyl-accepting chemotaxis protein CJE1323 82 COG2202 AtoS, FOG: PAS/PAC domain Signal transduction mechanisms 57237557 Pathogen - hypothetical protein CJE0555 1 None None None 57238234 Pathogen - hypothetical protein CJE0672 2 None None None 57238486 Common flgI flagellar basal body P-ring protein CJE1636 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 57237209 Common - undecaprenol kinase, putative CJE0198 200 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 57237906 Common - high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein CJE1163 135 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 57237585 Pathogen - hypothetical protein CJE0583 1 None None None 57237977 Common cutE apolipoprotein N-acyltransferase CJE1238 58 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 57238048 Common - twin-arginine translocation protein, TatA/E family CJE1310 6 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 57238470 Common kpsT capsular polysaccharide ABC transporter, ATP-binding protein CJE1620 248 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 57237372 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase CJE0366 212 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 57237396 Common uvrA excinuclease ABC subunit A CJE0390 240 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 57237322 Pathogen - hypothetical protein CJE0315 1 None None None 57238029 Common - cytochrome oxidase maturation protein, cbb3-type, putative CJE1290 3 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 57237379 Common fabH 3-oxoacyl-(acyl carrier protein) synthase III CJE0373 226 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 57238113 Pathogen - hypothetical protein CJE1376 1 None None None 57237714 Common rpsO 30S ribosomal protein S15 CJE0964 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 57238012 Common galE UDP-glucose 4-epimerase CJE1273 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 57237295 Common secG preprotein translocase subunit SecG CJE0286 13 COG1314 SecG, Preprotein translocase subunit SecG Intracellular trafficking and secretion 57237443 Common trpS tryptophanyl-tRNA synthetase CJE0437 239 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237980 Common pyrB aspartate carbamoyltransferase catalytic subunit CJE1241 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 57237460 Common aroE shikimate 5-dehydrogenase CJE0454 221 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 57238663 Common murI glutamate racemase CJE1824 189 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 57237639 Pathogen - hypothetical protein CJE0885 1 None None None 57237066 Pathogen - hypothetical protein CJE0053 1 None None None 57237733 Common - RNA methyltransferase, TrmH family CJE0983 161 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 57238396 Common ceuC enterochelin ABC transporter, permease protein CJE1542 43 COG4605 CeuC, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 57238369 Common neuB N-acetylneuraminic acid synthetase CJE1512 78 COG2089 SpsE, Sialic acid synthase Cell envelope biogenesis, outer membrane 57237361 Common - multidrug resistance protein, SMR family CJE0355 67 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 57237926 Common - hypothetical protein CJE1184 74 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 57237017 Common - transthyretin-like protein CJE0815 63 COG2351 COG2351, Transthyretin-like protein General function prediction only 57237806 Common - thermonuclease family protein CJE1061 92 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 57237935 Common - transporter, LysE family CJE1193 13 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 57237190 Common - PhnA domain protein CJE0178 105 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 57238500 Common - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein CJE1650 187 COG0546 Gph, Predicted phosphatases General function prediction only 57237277 Pathogen - hypothetical protein CJE0267 1 None None None 57237125 Common - PP-loop family protein CJE0113 167 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 57238342 Common dcd deoxycytidine triphosphate deaminase CJE1484 153 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 57237230 Pathogen - hypothetical protein CJE0219 1 None None None 57238022 Common waaF ADP-heptose--LPS heptosyltransferase II CJE1283 86 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 57237119 Common tolB translocation protein TolB CJE0107 126 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 57237491 Common - hypothetical protein CJE0486 10 COG5015 COG5015, Uncharacterized conserved protein Function unknown 57238355 Pathogen - acetyltransferase, GNAT family CJE1497 2 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 57238156 Pathogen - hypothetical protein CJE1420 1 None None None 57236907 Pathogen - hypothetical protein CJE1890 1 None None None 57237653 Pathogen - hypothetical protein CJE0899 1 None None None 57237255 Pathogen - hypothetical protein CJE0245 1 None None None 57237882 Pathogen - hypothetical protein CJE1138 2 None None None 57237113 Common atpG F0F1 ATP synthase subunit gamma CJE0101 207 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 57238285 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase CJE0619 192 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 57238353 Common - hypothetical protein CJE1495 2 None None None 57238000 Common cheY chemotaxis protein CheY CJE1261 224 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 57237982 Common - hypothetical protein CJE1243 7 None None None 57238296 Common - Hit family protein CJE0607 97 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 57236973 Common hslV ATP-dependent protease peptidase subunit CJE0765 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 57238414 Common - nucleotide phosphoribosyltransferase, putative CJE1562 54 COG2236 COG2236, Predicted phosphoribosyltransferases General function prediction only 57237036 Common cjaC CjaC CJE0834 182 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 57237860 Common - hypothetical protein CJE1115 2 None None None 57237879 Pathogen - hypothetical protein CJE1135 2 None None None 57237593 Pathogen - hypothetical protein CJE0591 1 None None None 57238186 Common - MATE efflux family protein CJE0722 124 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 57237872 Pathogen - hypothetical protein CJE1128 1 None None None 57237602 Common hrcA heat-inducible transcription repressor CJE0848 21 COG1420 HrcA, Transcriptional regulator of heat shock gene Transcription 57238258 Common hemA glutamyl-tRNA reductase CJE0646 180 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 57237534 Common - transcriptional regulator, IclR family CJE0530 69 COG1414 IclR, Transcriptional regulator Transcription 57238161 Pathogen - hypothetical protein CJE1425 1 None None None 57237838 Pathogen - hypothetical protein CJE1093 1 None None None 57238068 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CJE1330 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 57238079 Common - lipoprotein, putative CJE1341 66 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 57237033 Common - ABC transporter, permease protein CJE0831 188 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 57237243 Common - phage tail protein, putative CJE0232 16 COG4385 gpI, Bacteriophage P2-related tail formation protein General function prediction only 57238383 Common maf-5 motility accessory factor CJE1529 20 COG2604 COG2604, Uncharacterized protein conserved in bacteria Function unknown 57237044 Pathogen - hypothetical protein CJE0843 1 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 57238609 Common rplQ 50S ribosomal protein L17 CJE1768 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 57237869 Pathogen - hypothetical protein CJE1125 1 None None None 57238528 Common - hypothetical protein CJE1678 25 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 57238275 Common - penicillin-binding protein CJE0629 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 57237967 Common mfd transcription-repair coupling factor CJE1228 220 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 57237467 Common - GTP-binding protein CJE0461 32 COG3596 COG3596, Predicted GTPase General function prediction only 57237970 Common folC folC bifunctional protein CJE1231 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 57238590 Common nuoC NADH dehydrogenase subunit C CJE1748 169 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 57238666 Common nhaA-2 Na+/H+ antiporter NhaA CJE1827 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 57236926 Common ilvD dihydroxy-acid dehydratase CJE0012 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 57238689 Common cysQ CysQ CJE1850 168 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 57236918 Common - hypothetical protein CJE0004 6 None None None 57238702 Common rplE 50S ribosomal protein L5 CJE1863 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 57237509 Common - hypothetical protein CJE0505 4 None None None 57238691 Common - sodium/hydrogen exchanger family protein CJE1852 149 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 57238435 Common - feoA family protein CJE1584 6 COG1918 FeoA, Fe2+ transport system protein A Inorganic ion transport and metabolism 57238661 Common - hypothetical protein CJE1822 3 None None None 57237513 Common - hypothetical protein CJE0509 7 None None None 57236957 Common - hydrolase, TatD family CJE0747 235 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 57238407 Common - hypothetical protein CJE1555 128 COG0628 PerM, Predicted permease General function prediction only 57238400 Common nrfH cytochrome c-type protein nrfH CJE1547 53 COG3005 TorC, Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit Energy production and conversion 57238523 Common - predicted inner membrane protein CJE1673 65 COG2391 COG2391, Predicted transporter component General function prediction only 57237623 Common - major antigenic peptide PEB2 CJE0869 14 COG4588 AcfC, Accessory colonization factor AcfC, contains ABC-type periplasmic domain General function prediction only 57238576 Common - arsenical-resistance protein, putative CJE1733 130 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 57238504 Common - ATP-dependent DNA helicase, UvrD/REP family CJE1654 218 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 57238682 Common - hypothetical protein CJE1843 2 None None None 57238698 Common rplR 50S ribosomal protein L18 CJE1859 200 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 57238307 Common - hypothetical protein CJE1448 7 None None None 57237325 Common ilvE branched-chain amino acid aminotransferase CJE0318 216 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 57237889 Pathogen - hypothetical protein CJE1146 1 None None None 57237188 Common - transporter, putative CJE0176 218 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 57237561 Pathogen - hypothetical protein CJE0559 1 None None None 57237178 Common - iron ABC transporter, ATP binding subunit CJE0166 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 57237162 Common - tetrapyrrole methylase family protein CJE0150 208 COG0313 COG0313, Predicted methyltransferases General function prediction only 57238213 Pathogen - lipoprotein, putative CJE0694 2 None None None 57238652 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase CJE1813 208 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 57237678 Common - hypothetical protein CJE0924 6 None None None 57237100 Common - hypothetical protein CJE0088 11 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 57237347 Common panD aspartate alpha-decarboxylase CJE0341 130 COG0853 PanD, Aspartate 1-decarboxylase Coenzyme metabolism 57237235 Pathogen - hypothetical protein CJE0224 1 None None None 57237432 Common - ATPase, AAA family protein CJE0426 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 57238199 Common - carboxypeptidase CJE0708 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 57237040 Pathogen - hypothetical protein CJE0839 1 None None None 57238090 Common ribE riboflavin synthase subunit alpha CJE1353 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 57238341 Common accB acetyl-CoA carboxylase, biotin carboxyl carrier protein CJE1483 178 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 57238086 Pathogen - hypothetical protein CJE1349 1 None None None 57238675 Common - thiredoxin, homolog CJE1836 17 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 57237765 Common - hypothetical protein CJE1015 62 COG0679 COG0679, Predicted permeases General function prediction only 57238272 Common flgB flagellar basal body rod protein FlgB CJE0632 51 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 57237485 Common - hypothetical protein CJE0480 7 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 57238441 Common nadD nicotinate (nicotinamide) nucleotide adenylyltransferase CJE1591 178 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 57238251 Common fliS flagellar protein FliS CJE0653 76 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 57238263 Common oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB CJE0641 110 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 57237388 Common - flagellar motor protein MotA CJE0382 113 COG1291 MotA, Flagellar motor component Cell motility and secretion 57236981 Pathogen - hypothetical protein CJE0773 1 None None None 57238034 Common - hypothetical protein CJE1296 1 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 57238348 Common - hypothetical protein CJE1490 7 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 57238430 Common - hypothetical protein CJE1578 36 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 57238624 Common rpsT 30S ribosomal protein S20 CJE1783 162 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 57237721 Pathogen - hypothetical protein CJE0971 1 None None None 57237566 Pathogen - hypothetical protein CJE0564 1 None None None 57236948 Common - Holliday junction resolvase-like protein CJE0738 22 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 57237698 Common - molybdopterin biosynthesis MoeA protein, putative CJE0944 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 57237577 Pathogen - hypothetical protein CJE0575 1 None None None 57237335 Common - hypothetical protein CJE0328 7 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 57238586 Common nuoG NADH dehydrogenase subunit G CJE1744 181 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 57238007 Common pglB general glycosylation pathway protein CJE1268 11 COG1287 COG1287, Uncharacterized membrane protein, required for N-linked glycosylation General function prediction only 57238050 Common - hypothetical protein CJE1312 4 COG5271 MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain General function prediction only 57237475 Common - hypothetical protein CJE0469 116 COG2353 COG2353, Uncharacterized conserved protein Function unknown 57238298 Common - lipoprotein, putative CJE0605 14 None None None 57238027 Common - hydrolase, putative CJE1288 127 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 57237735 Common - hypothetical protein CJE0985 47 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 57237896 Pathogen - hypothetical protein CJE1153 1 None None None 57237296 Common - hypothetical protein CJE0287 139 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 57237420 Common cmeC RND efflux system, outer membrane lipoprotein CmeC CJE0414 116 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 57237445 Common - TPR domain protein CJE0439 12 None None None 57237288 Common pcm protein-L-isoaspartate O-methyltransferase CJE0279 156 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 57238119 Common uvrC excinuclease ABC subunit C CJE1382 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 57237197 Common clpP ATP-dependent Clp protease proteolytic subunit CJE0185 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 57237274 Pathogen - hypothetical protein CJE0264 1 None None None 57237812 Common hipO hippurate hydrolase CJE1067 170 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 57238706 Common rpmC 50S ribosomal protein L29 CJE1867 14 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 57238331 Common - HNH endonuclease domain protein CJE1473 23 COG1403 McrA, Restriction endonuclease Defense mechanisms 57238257 Common proS prolyl-tRNA synthetase CJE0647 247 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57238222 Common - aspartate kinase CJE0685 237 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 57237324 Common - SPFH domain / Band 7 family protein CJE0317 39 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 57238424 Pathogen - lipoprotein, putative CJE1572 1 None None None 57237972 Common - lipoprotein, putative CJE1233 7 None None None 57237809 Common - surface antigen, CjaA CJE1064 175 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 57236967 Common - di-/tripeptide transporter CJE0757 80 COG3104 PTR2, Dipeptide/tripeptide permease Amino acid transport and metabolism 57238020 Common - hypothetical protein CJE1281 3 None None None 57237719 Common - DNA-binding response regulator CJE0969 215 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 57237060 Pathogen - hypothetical protein CJE0045 1 None None None 57237756 Common - DedA family protein CJE1006 119 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 57238429 Common - ankyrin repeat protein CJE1577 77 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 57238142 Common - oxidoreductase, 2-nitropropane dioxygenase family CJE1406 133 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 57238561 Common - hypothetical protein CJE1714 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 57238581 Common nuoL NADH dehydrogenase subunit L CJE1739 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 57238716 Common - nitroreductase family protein CJE1209 119 COG0778 NfnB, Nitroreductase Energy production and conversion 57237490 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase CJE0485 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 57238250 Pathogen - hypothetical protein CJE0654 1 None None None 57237281 Pathogen - hypothetical protein CJE0271 1 None None None 57237116 Common - MotA/TolQ/ExbB proton channel family protein CJE0104 136 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 57238336 Common upp uracil phosphoribosyltransferase CJE1478 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 57237394 Pathogen - hypothetical protein CJE0388 1 None None None 57237618 Common - ABC transporter, permease protein CJE0864 101 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 57238121 Pathogen - hypothetical protein CJE1384 1 None None None 57237431 Pathogen - hypothetical protein CJE0425 1 None None None 57238356 Common - formyl transferase domain protein CJE1498 72 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 57238049 Common gmk guanylate kinase CJE1311 212 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 57237120 Common - peptidoglycan-associated lipoprotein Omp18 CJE0108 147 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 57238112 Pathogen - hypothetical protein CJE1375 1 None None None 57238574 Common arsR arsenical resistance operon repressor CJE1731 130 COG0640 ArsR, Predicted transcriptional regulators Transcription 57237987 Common smpB SsrA-binding protein CJE1248 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 57238540 Common - thiS family protein CJE1690 7 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 57237559 Pathogen - hypothetical protein CJE0557 1 None None None 57238529 Common - methyl-accepting chemotaxis protein CJE1679 138 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57238726 Pathogen - hypothetical protein CJE1444 1 None None None 57237568 Common - DNA/RNA non-specific endonuclease CJE0566 38 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 57238305 Common - hypothetical protein CJE1445 5 None None None 57238531 Common fdhD formate dehydrogenase accessory protein CJE1681 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 57237511 Common - hypothetical protein CJE0507 44 COG2121 COG2121, Uncharacterized protein conserved in bacteria Function unknown 57238416 Common - toluene tolerance protein, putative CJE1564 62 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 57237374 Common - hypothetical protein CJE0368 1 None None None 57237147 Common - hypothetical protein CJE0135 26 COG4268 McrC, McrBC 5-methylcytosine restriction system component Defense mechanisms 57237518 Common recG ATP-dependent DNA helicase RecG CJE0514 215 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 57237497 Pathogen - hypothetical protein CJE0492 1 None None None 57237440 Common - integral membrane protein CJE0434 110 COG2510 COG2510, Predicted membrane protein Function unknown 57237712 Common flhA flagellar biosynthesis protein A CJE0962 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 57237822 Common gidB methyltransferase GidB CJE1077 144 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 57238519 Common - hypothetical protein CJE1669 10 COG3334 COG3334, Uncharacterized conserved protein Function unknown 57237537 Common - tartrate transporter, putative CJE0534 94 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 57237096 Common - lipoprotein, putative CJE0084 22 COG3014 COG3014, Uncharacterized protein conserved in bacteria Function unknown 57237092 Common - aspartate racemase, putative CJE0080 84 COG1794 RacX, Aspartate racemase Cell envelope biogenesis, outer membrane 57237051 Common - cytochrome c family protein CJE0036 35 COG3258 COG3258, Cytochrome c Energy production and conversion 57237392 Common - hypothetical protein CJE0386 91 COG1238 COG1238, Predicted membrane protein Function unknown 57238191 Common - phosphate ABC transporter, periplasmic phosphate-binding protein, putative CJE0716 141 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 57237835 Common tgt queuine tRNA-ribosyltransferase CJE1090 229 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 57237850 Pathogen - hypothetical protein CJE1105 1 None None None 57238386 Pathogen ctsG transformation system protein CJE1532 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 57238281 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative CJE0623 145 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 57237829 Common - hypothetical protein CJE1084 4 None None None 57238597 Common - peptide ABC transporter, periplasmic peptide-binding protein CJE1755 208 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 57238482 Common - thiamine monophosphate kinase CJE1632 184 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 57238634 Common - riboflavin biosynthesis protein RibD, putative CJE1794 199 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 57237610 Common hisS histidyl-tRNA synthetase CJE0856 240 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57238520 Pathogen - hypothetical protein CJE1670 1 None None None 57237203 Common - recombination factor protein RarA CJE0191 244 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 57238680 Common - DNA ligase CJE1841 31 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 57238104 Common - hypothetical protein CJE1367 2 None None None 57238723 Common - DNA/RNA non-specific endonuclease CJE1441 38 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 57238446 Common acpS 4'-phosphopantetheinyl transferase CJE1596 92 COG0736 AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) Lipid metabolism 57238046 Common - multidrug resistance protein, SMR family CJE1308 43 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 57237078 Common sppA signal peptide peptidase SppA, 36K type CJE0065 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 57237069 Common fliY flagellar motor switch protein FliY CJE0056 116 COG1776 CheC, Chemotaxis protein CheC, inhibitor of MCP methylation Cell motility and secretion / Signal transduction mechanisms 57237412 Common - hypothetical protein CJE0406 169 COG0344 COG0344, Predicted membrane protein Function unknown 57237151 Pathogen - hypothetical protein CJE0139 1 None None None 57238619 Common mrp ATP/GTP-binding protein CJE1778 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 57237129 Pathogen - hypothetical protein CJE0117 1 None None None 57237013 Common - hypothetical protein CJE0811 7 COG1837 COG1837, Predicted RNA-binding protein (contains KH domain) General function prediction only 57238674 Common - ABC transporter, ATP-binding protein CJE1835 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 57237015 Common trmD tRNA (guanine-N(1)-)-methyltransferase CJE0813 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 57237933 Common thiS thiamine biosynthesis protein ThiS CJE1191 14 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 57237217 Pathogen - hypothetical protein CJE0206 1 None None None 57238328 Pathogen - toxin-antitoxin protein, putative CJE1470 1 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 57237908 Pathogen - porin domain protein CJE1165 1 None None None 57237484 Common - hypothetical protein CJE0478 132 COG1739 COG1739, Uncharacterized conserved protein Function unknown 57236919 Common - molybdopterin oxidoreductase family protein CJE0005 63 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 57236989 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CJE0785 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 57238556 Common - tungsten ABC transporter, ATP-binding protein, putative CJE1709 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 57238644 Common - hypothetical protein CJE1805 29 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 57237937 Common - type II restriction-modification enzyme CJE1195 117 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 57237241 Pathogen - hypothetical protein CJE0230 1 None None None 57237951 Common - hypothetical protein CJE1212 17 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 57237353 Common - TOBE domain protein CJE0347 3 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 57237163 Common rpmE 50S ribosomal protein L31 CJE0151 179 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 57237696 Common folD folD bifunctional protein CJE0942 224 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 57237901 Common livF high affinity branched-chain amino acid ABC transporter, ATP-binding protein CJE1158 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 57238557 Common - tungstate ABC transporter, permease protein, putative CJE1710 105 COG4662 TupA, ABC-type tungstate transport system, periplasmic component Coenzyme metabolism 57237740 Common cysK cysteine synthase A CJE0990 221 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 57237405 Pathogen - hypothetical protein CJE0399 1 None None None 57237859 Pathogen - hypothetical protein CJE1114 2 None None None 57237688 Common psd phosphatidylserine decarboxylase CJE0934 90 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 57238245 Common - hypothetical protein CJE0659 19 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 57237588 Pathogen - hypothetical protein CJE0586 1 None None None 57237189 Common - Ser/Thr protein phosphatase family protein CJE0177 30 COG4639 COG4639, Predicted kinase General function prediction only 57238229 Common ilvH acetolactate synthase 3 regulatory subunit CJE0678 190 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 57238512 Common ccoO cytochrome c oxidase, cbb3-type, subunit II CJE1662 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 57238690 Common gltA citrate synthase CJE1851 194 COG0372 GltA, Citrate synthase Energy production and conversion 57237226 Common - phage repressor protein, putative CJE0215 15 COG2932 COG2932, Predicted transcriptional regulator Transcription 57237663 Common coaBC bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase CJE0909 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 57238592 Common nuoA NADH dehydrogenase subunit A CJE1750 10 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 57237792 Common - hypothetical protein CJE1044 6 None None None 57237893 Pathogen - hypothetical protein CJE1150 1 None None None 57236964 Common - hypothetical protein CJE0754 1 None None None 57238610 Common hisG ATP phosphoribosyltransferase CJE1769 213 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 57237849 Pathogen - hypothetical protein CJE1104 1 None None None 57238629 Common - hemin ABC transporter, ATP-binding protein, putative CJE1788 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 57237239 Pathogen - hypothetical protein CJE0228 1 None None None 57238646 Common rnc ribonuclease III CJE1807 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 57238654 Common - PDZ domain protein CJE1815 5 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 57237645 Common - hypothetical protein CJE0891 4 None None None 57238318 Pathogen - hypothetical protein CJE1459 1 None None None 57237673 Common - Na+/H+ antiporter family protein CJE0919 42 COG1757 NhaC, Na+/H+ antiporter Energy production and conversion 57237149 Common - cation ABC transporter, ATP-binding protein CJE0137 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 57237804 Common - hypothetical protein CJE1059 10 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 57237246 Pathogen - hypothetical protein CJE0235 1 None None None 57237665 Common uppS undecaprenyl diphosphate synthase CJE0911 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 57236995 Common - hypothetical protein CJE0791 17 None None None 57237102 Common rpmA 50S ribosomal protein L27 CJE0090 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 57237608 Common cysE serine acetyltransferase CJE0854 208 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 57238569 Common - 4-carboxymuconolactone decarboxylase, putative CJE1725 70 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 57237525 Common rpmG 50S ribosomal protein L33 CJE0521 93 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 57238464 Common - hypothetical protein CJE1614 2 None None None 57237136 Common - outer membrane protein, OMP85 family CJE0124 153 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 57238260 Pathogen - hypothetical protein CJE0644 1 None None None 57238084 Common glcD glycolate oxidase, subunit GlcD CJE1347 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 57237156 Common - hypothetical protein CJE0144 58 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 57238700 Common rpsH 30S ribosomal protein S8 CJE1861 231 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 57237782 Common - DnaJ domain protein CJE1034 71 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 57236949 Common - NOL1/NOP2/sun family protein CJE0739 198 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 57238345 Common - hypothetical protein CJE1487 14 COG4310 COG4310, Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain General function prediction only 57238088 Pathogen - hypothetical protein CJE1351 1 None None None 57237546 Common - site-specific recombinase, phage integrase family CJE0544 99 COG0582 XerC, Integrase DNA replication, recombination, and repair 57237946 Common ileS isoleucyl-tRNA synthetase CJE1204 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237131 Common - hypothetical protein CJE0119 8 None None None 57237763 Common - sodium transporter, putative CJE1013 88 COG0733 COG0733, Na+-dependent transporters of the SNF family General function prediction only 57237473 Common - hypothetical protein CJE0467 14 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 57237225 Pathogen - hypothetical protein CJE0214 1 None None None 57237344 Common - major antigenic peptide PEB3 CJE0337 24 COG4588 AcfC, Accessory colonization factor AcfC, contains ABC-type periplasmic domain General function prediction only 57238277 Common - hypothetical protein CJE0627 1 None None None 57237349 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase CJE0343 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 57237570 Common - hypothetical protein CJE0568 5 None None None 57238233 Common - transcriptional regulator, putative CJE0674 27 COG2378 COG2378, Predicted transcriptional regulator Transcription 57238589 Common nuoD NADH dehydrogenase subunit D CJE1747 192 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 57238189 Common - phosphate ABC transporter, permease protein PstA, putative CJE0718 221 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 57237627 Common napH quinol dehydrogenase membrane component CJE0873 61 COG0348 NapH, Polyferredoxin Energy production and conversion 57238074 Common metF 5,10-methylenetetrahydrofolate reductase CJE1336 144 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 57237140 Common - hypothetical protein CJE0128 9 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 57237870 Pathogen - hypothetical protein CJE1126 1 None None None 57238687 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase CJE1848 146 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 57238536 Common - hypothetical protein CJE1686 7 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 57237419 Common - hypothetical protein CJE0413 1 None None None 57238487 Common - hypothetical protein CJE1637 6 None None None 57237385 Common - antioxidant, AhpC/Tsa family CJE0379 218 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 57237550 Common - phage anti-repressor protein, putative CJE0548 20 COG3561 COG3561, Phage anti-repressor protein Transcription 57237314 Common dgkA diacylglycerol kinase CJE0307 82 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 57238469 Common kpsE capsular polysaccharide ABC transporter CJE1619 49 COG3524 KpsE, Capsule polysaccharide export protein Cell envelope biogenesis, outer membrane 57238456 Common - haloacid dehalogenase-like hydrolase domain/phosphoribulokinase domain protein CJE1606 36 COG0572 Udk, Uridine kinase Nucleotide transport and metabolism 57238705 Common rpsQ 30S ribosomal protein S17 CJE1866 215 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 57237601 Common cfrA ferric receptor CfrA CJE0847 130 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 57237175 Pathogen - hypothetical protein CJE0163 1 None None None 57237979 Common - sodium/dicarboxylate symporter CJE1240 144 COG3633 SstT, Na+/serine symporter Amino acid transport and metabolism 57238006 Common pglA general glycosylation pathway protein CJE1267 168 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 57238718 Pathogen - hypothetical protein CJE0479 1 None None None 57238268 Common mdh malate dehydrogenase CJE0636 160 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 57237104 Common proB gamma-glutamyl kinase CJE0092 189 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 57237918 Common - hypothetical protein CJE1176 62 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 57237262 Common - phage tail protein, putative CJE0252 6 COG3499 COG3499, Phage protein U General function prediction only 57237427 Common - glutathionylspermidine synthase family protein CJE0421 54 COG0754 Gsp, Glutathionylspermidine synthase Amino acid transport and metabolism 57238110 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ CJE1373 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 57237058 Common - hypothetical protein CJE0043 4 None None None 57238247 Common - hypothetical protein CJE0657 28 COG3817 COG3817, Predicted membrane protein Function unknown 57237450 Pathogen - tram-like protein CJE0444 1 None None None 57237953 Common ssb single-strand DNA-binding protein CJE1214 190 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 57238117 Common - radical SAM domain protein CJE1380 46 COG0731 COG0731, Fe-S oxidoreductases Energy production and conversion 57238096 Common - non-heme iron protein, hemerythrin family CJE1359 44 COG2703 COG2703, Hemerythrin Inorganic ion transport and metabolism 57237376 Common xseA exodeoxyribonuclease VII large subunit CJE0370 205 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 57237961 Pathogen - hypothetical protein CJE1222 1 None None None 57238409 Common - serine protease, subtilase family CJE1557 65 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 57238205 Common - chemotaxis protein MotB, putative CJE0702 55 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 57236916 Common dnaN DNA polymerase III subunit beta CJE0002 212 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 57237823 Common - hypothetical protein CJE1078 5 None None None 57238069 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B CJE1331 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 57237206 Pathogen - hypothetical protein CJE0194 2 None None None 57238491 Common - hypothetical protein CJE1641 22 None None None 57238240 Common - hypothetical protein CJE0666 6 None None None 57236979 Common rpoN RNA polymerase factor sigma-54 CJE0771 143 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 57238402 Pathogen - hypothetical protein CJE1550 1 None None None 57237846 Pathogen - hypothetical protein CJE1101 1 None None None 57236997 Common - peptidyl-prolyl cis-trans isomerase D, homolog CJE0793 92 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 57238501 Common cadF fibronectin-binding protein CJE1651 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 57237083 Common - cysteine-rich domain protein CJE0071 164 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 57238526 Common - bifunctional putA protein, putative CJE1676 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 57238180 Common hypD hydrogenase expression/formation protein HypD CJE0728 109 COG0409 HypD, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 57237655 Common nadE NAD+ synthetase CJE0901 230 COG0171 NadE, NAD synthase Coenzyme metabolism 57237968 Common - hypothetical protein CJE1229 67 COG1664 CcmA, Integral membrane protein CcmA involved in cell shape determination Cell envelope biogenesis, outer membrane 57238300 Common - hypothetical protein CJE0603 83 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 57238563 Common - flavodoxin-like fold domain protein CJE1716 38 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 57237911 Common - sigma-54 dependent DNA-binding response regulator CJE1168 215 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 57237789 Common rpmH 50S ribosomal protein L34 CJE1041 198 COG0230 RpmH, Ribosomal protein L34 Translation, ribosomal structure and biogenesis 57237257 Pathogen - hypothetical protein CJE0247 2 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 57238602 Common - metallo-beta-lactamase domain protein CJE1761 32 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 57237993 Common - integral membrane protein, MarC family CJE1254 156 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 57238018 Common - lipooligosaccharide biosynthesis glycosyltransferase, putative CJE1279 181 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 57237038 Common - haemagglutination domain protein CJE0837 30 None None None 57238283 Common purQ phosphoribosylformylglycinamidine synthase subunit I CJE0621 232 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 57236942 Common - type III restriction-modification enzyme CJE0732 17 COG3421 COG3421, Uncharacterized protein conserved in bacteria Function unknown 57237884 Common - hypothetical protein CJE1141 10 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 57237504 Common rpmB 50S ribosomal protein L28 CJE0500 167 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 57238338 Common gltX glutamyl-tRNA synthetase CJE1480 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 57238128 Common - hypothetical protein CJE1391 47 COG3663 Mug, G:T/U mismatch-specific DNA glycosylase DNA replication, recombination, and repair 57237004 Common - peptidase, U32 family CJE0801 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 57237985 Common csrA carbon storage regulator CJE1246 10 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 57237109 Common - F0F1 ATP synthase subunit B' CJE0097 7 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 57237616 Common - lipoprotein, NLPA family CJE0862 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 57238160 Pathogen - hypothetical protein CJE1424 1 None None None 57238728 Pathogen - phage protein, HK97 gp10 family CJE1468 1 None None None 57237494 Common sdhB succinate dehydrogenase, iron-sulfur protein subunit CJE0489 196 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 57238418 Common - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family CJE1566 233 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 161486705 Common lolA outer-membrane lipoprotein carrier protein CJE1021 11 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 57237632 Common - hypothetical protein CJE0878 4 None None None 57238467 Common kpsF arabinose-5-phosphate isomerase CJE1617 173 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 57237625 Common napA periplasmic nitrate reductase, large subunit CJE0871 180 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 57238648 Common - hypothetical protein CJE1809 7 COG4235 COG4235, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 57237425 Common rpsU 30S ribosomal protein S21 CJE0419 82 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 57238358 Common - polysaccharide deacetylase family protein CJE1500 15 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 57237683 Common - lipoprotein, putative CJE0929 1 None None None 57237922 Pathogen - hypothetical protein CJE1180 1 None None None 57237311 Common - hypothetical protein CJE0304 3 None None None 57237581 Pathogen - hypothetical protein CJE0579 1 None None None 57238149 Common lolD lipoprotein releasing system ATP-binding protein LolD CJE1413 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 57238533 Common fdhB formate dehydrogenase, iron-sulfur subunit CJE1683 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 57238351 Pathogen - acyl carrier protein, putative CJE1493 1 None None None 57236923 Common rnhB ribonuclease HII CJE0009 206 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 57237820 Common hemB delta-aminolevulinic acid dehydratase CJE1075 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 57237482 Pathogen - hypothetical protein CJE0476 1 None None None 57238082 Common - DedA family protein CJE1344 83 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 57238428 Common katA catalase CJE1576 122 COG0753 KatE, Catalase Inorganic ion transport and metabolism 57237807 Common pepD aminoacyl-histidine dipeptidase CJE1062 52 COG2195 PepD, Di- and tripeptidases Amino acid transport and metabolism 57237073 Common - ATPase, ParA family CJE0060 238 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 57237730 Common - amino acid ABC tansporter, permease protein, His/Glu/Gln/Arg/opine family CJE0980 182 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 57238361 Pathogen - hypothetical protein CJE1503 1 None None None 57237272 Common - conserved hypothetical protein TIGR01671 CJE0262 6 None None None 57238422 Common selB selenocysteine-specific elongation factor CJE1570 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 57238231 Common - GatB/Yqey family protein CJE0676 152 COG1610 COG1610, Uncharacterized conserved protein Function unknown 57237495 Common sdhC succinate dehydrogenase, C subunit CJE0490 49 COG2048 HdrB, Heterodisulfide reductase, subunit B Energy production and conversion 57237903 Common livM high affinity branched-chain amino acid ABC transporter, permease protein CJE1160 150 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 57237291 Common nrdF ribonucleotide-diphosphate reductase subunit beta CJE0282 155 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 57237176 Common sodB superoxide dismutase, Fe CJE0164 207 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 57237399 Pathogen - hypothetical protein CJE0393 1 None None None 57237062 Common - lysine decarboxylase family protein CJE0049 104 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 57238220 Common - DNA polymerase III subunit delta' CJE0687 13 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 57237802 Pathogen - hypothetical protein CJE1055 1 None None None 57236955 Common recN DNA repair protein RecN CJE0745 197 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 57237161 Common - RNA methyltransferase, TrmH family CJE0149 213 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 57238549 Common dapF diaminopimelate epimerase CJE1702 191 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 57236930 Pathogen - hypothetical protein CJE0018 1 None None None 57238255 Common hemC porphobilinogen deaminase CJE0649 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 57237260 Common - hypothetical protein CJE0250 26 COG4383 COG4383, Mu-like prophage protein gp29 Function unknown 57237898 Pathogen - hypothetical protein CJE1155 1 None None None 57238227 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase CJE0680 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 57237133 Common - hypothetical protein CJE0121 165 COG1576 COG1576, Uncharacterized conserved protein Function unknown 57238140 Common mnmC 5-methylaminomethyl-2-thiouridine methyltransferase CJE1404 69 COG4121 COG4121, Uncharacterized conserved protein Function unknown 57237868 Common - hypothetical protein CJE1124 13 COG1432 COG1432, Uncharacterized conserved protein Function unknown 57237725 Common pheT phenylalanyl-tRNA synthetase subunit beta CJE0975 213 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 57237433 Pathogen - hypothetical protein CJE0427 1 COG2717 COG2717, Predicted membrane protein Function unknown 57237717 Common - ABC transporter, ATP-binding protein CJE0967 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 57238015 Common waaM lipid A biosynthesis lauroyl acyltransferase CJE1276 114 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 57238612 Common hisB imidazole glycerol-phosphate dehydratase/histidinol phosphatase CJE1771 216 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 57238473 Pathogen - hypothetical protein CJE1623 1 None None None 57237742 Common ciaB invasion antigen B CJE0992 7 None None None 57237942 Pathogen - exodeoxyribonuclease VII, small subunit, putative CJE1200 1 None None None 57237306 Pathogen - hypothetical protein CJE0299 1 None None None 57238103 Common - sodium/hydrogen exchanger family protein CJE1366 206 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 57237647 Common cysS cysteinyl-tRNA synthetase CJE0893 241 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 57237087 Pathogen cdtA cytolethal distending toxin, subunit A CJE0075 5 None None None 57238208 Common - major antigenic peptide PEB4 CJE0699 159 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 57238434 Common - MmgE/PrpD family protein CJE1583 64 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 57237237 Common - phage major tail tube protein, putative CJE0226 4 COG3498 COG3498, Phage tail tube protein FII General function prediction only 57236991 Common pta phosphate acetyltransferase CJE0787 166 COG0280 Pta, Phosphotransacetylase Energy production and conversion 57237029 Common - ABC transporter, periplasmic substrate-binding protein CJE0827 56 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 57237675 Common - ankyrin repeat protein CJE0921 39 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 57238599 Common - flavohemoprotein, truncation CJE1757 67 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 57237706 Common dsbB putative disulfide oxidoreductase CJE0952 24 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 57237661 Common fliP flagellar biosynthesis protein FliP CJE0907 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 57237080 Pathogen - hypothetical protein CJE0067 1 None None None 57238697 Common rpsE 30S ribosomal protein S5 CJE1858 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 57237874 Pathogen - hypothetical protein CJE1130 2 None None None 57238038 Common - hypothetical protein CJE1300 37 COG2966 COG2966, Uncharacterized conserved protein Function unknown 57237827 Common sixA phosphohistidine phosphatase SixA CJE1082 61 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 57238656 Common tkt transketolase CJE1817 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 57236899 Common - radical SAM enzyme, Cfr family CJE1882 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 57238484 Common - hypothetical protein CJE1634 4 None None None 57237847 Pathogen - hypothetical protein CJE1102 1 None None None 57238559 Common - hypothetical protein CJE1712 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 57237368 Common hisC histidinol-phosphate aminotransferase CJE0362 224 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 57237442 Common aroK shikimate kinase CJE0436 178 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 57238641 Common exbD biopolymer transport exbD protein CJE1801 71 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 57237530 Common rplJ 50S ribosomal protein L10 CJE0526 142 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 57237409 Common - ferredoxin, 4Fe-4S CJE0403 115 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 57237834 Common - trkA domain protein CJE1089 10 COG3400 COG3400, Uncharacterized protein conserved in bacteria Function unknown 57238708 Common rpsC 30S ribosomal protein S3 CJE1869 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 57237794 Pathogen - hypothetical protein CJE1046 1 None None None 57238638 Common - hypothetical protein CJE1798 5 None None None 57238320 Common - hypothetical protein CJE1461 27 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 57238636 Common sdaA L-serine ammonia-lyase CJE1796 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 57238041 Pathogen - hypothetical protein CJE1303 1 None None None 57237205 Pathogen - hypothetical protein CJE0193 1 None None None 57237211 Common infC translation initiation factor IF-3 CJE0200 209 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 57237053 Common typA GTP-binding protein TypA CJE0038 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 57237269 Pathogen - hypothetical protein CJE0259 1 None None None 57237022 Common flaC flagellin subunit protein FlaC CJE0820 92 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 57237403 Common trpB tryptophan synthase subunit beta CJE0397 224 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 57237957 Common - flagellar assembly protein FliW CJE1218 26 COG1699 COG1699, Uncharacterized protein conserved in bacteria Function unknown 57237523 Common - amino acid ABC transporter, ATP-binding protein CJE0519 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 57237199 Common folE GTP cyclohydrolase I CJE0187 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 57237094 Common aspA aspartate ammonia-lyase CJE0082 238 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 57237221 Pathogen - hypothetical protein CJE0210 1 None None None 57237694 Common hemL glutamate-1-semialdehyde aminotransferase CJE0940 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 57237414 Pathogen - hypothetical protein CJE0408 1 None None None 57238448 Common - cytochrome P450 family protein CJE1598 75 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 57238725 Pathogen - hypothetical protein CJE1443 1 None None None 57236965 Common pbpC penicillin-binding protein 2 CJE0755 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 57237815 Pathogen - hypothetical protein CJE1070 2 None None None 57238631 Common kgtP alpha-ketoglutarate permease CJE1791 140 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238326 Pathogen - hypothetical protein CJE1467 1 None None None 57237301 Common - hypothetical protein CJE0293 2 None None None 57237775 Common - hydrolase, carbon-nitrogen family CJE1025 201 COG0388 COG0388, Predicted amidohydrolase General function prediction only 57237359 Common bioD dethiobiotin synthetase CJE0353 101 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 57237974 Common secF preprotein translocase subunit SecF CJE1235 220 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 57238031 Common rho transcription termination factor Rho CJE1292 204 COG1158 Rho, Transcription termination factor Transcription 57237090 Common cydB cytochrome d ubiquinol oxidase, subunit II CJE0078 84 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 57237352 Common modB molybdenum ABC transporter, permease protein CJE0346 211 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 57237186 Common - TonB-dependent colicin receptor protein, putative CJE0174 32 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 57238550 Common - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein CJE1703 32 COG2992 Bax, Uncharacterized FlgJ-related protein General function prediction only 57237858 Pathogen - hypothetical protein CJE1113 2 None None None 57238695 Common secY preprotein translocase subunit SecY CJE1856 232 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 57237796 Pathogen - hypothetical protein CJE1049 1 None None None 57237548 Common - pentapeptide repeat family protein CJE0546 9 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 57237142 Common - hypothetical protein CJE0130 4 COG2740 COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination Transcription 57237844 Pathogen - hypothetical protein CJE1099 1 None None None 57238678 Pathogen - hypothetical protein CJE1839 1 None None None 57238372 Common - formyltransferase, putative CJE1515 110 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 57237516 Common - hypothetical protein CJE0512 81 COG1060 ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes Coenzyme metabolism / General function prediction only 57237875 Pathogen - hypothetical protein CJE1131 1 None None None 57238439 Common pgk phosphoglycerate kinase CJE1589 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 57238547 Common purM phosphoribosylaminoimidazole synthetase CJE1700 230 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 57238137 Common hydC quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit CJE1401 42 COG1969 HyaC, Ni,Fe-hydrogenase I cytochrome b subunit Energy production and conversion 57238316 Pathogen - hypothetical protein CJE1457 1 None None None 57238458 Common - capsular biosynthesis nucleotidyltransferase, putative CJE1608 230 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 57238579 Common nuoN NADH-quinone oxidoreductase, N subunit CJE1737 209 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 57237540 Common - hypothetical protein CJE0537 13 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 57237184 Common exbB-1 TonB system transport protein ExbB CJE0172 153 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 57237329 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase CJE0322 187 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 57238462 Common fcl GDP-L-fucose synthetase CJE1612 169 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 57238489 Common - hypothetical protein CJE1639 2 None None None 57237316 Common pyrC dihydroorotase CJE0309 87 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 57238452 Common - capsular polysaccharide biosynthesis protein, putative CJE1602 3 None None None 57238054 Common rpsB 30S ribosomal protein S2 CJE1316 224 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 57237562 Pathogen - hypothetical protein CJE0560 1 None None None 57236962 Common - OstA family protein CJE0752 8 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 57237768 Common - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family CJE1018 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 57237598 Common - hypothetical protein CJE0597 5 None None None 57238193 Common algI alginate O-acetyltransferase AlgI CJE0714 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 57237998 Common ftsH cell division protein FtsH CJE1259 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 57237865 Pathogen - hypothetical protein CJE1120 1 None None None 57237940 Common murC UDP-N-acetylmuramate--L-alanine ligase CJE1198 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 57236893 Common rpsJ 30S ribosomal protein S10 CJE1876 244 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 57237138 Common - peptidase, M23/M37 family CJE0126 165 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 57238262 Common oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC CJE0642 53 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 57238333 Common - potassium uptake protein, TrkH family CJE1475 90 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 57237106 Common - biotin--protein ligase CJE0094 117 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 57237754 Common - hypothetical protein CJE1004 4 COG4467 COG4467, Uncharacterized protein conserved in bacteria Function unknown 57237158 Common - aspartate aminotransferase CJE0146 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 57237471 Pathogen - hypothetical protein CJE0465 1 None None None 57237478 Pathogen - hypothetical protein CJE0472 3 None None None 57238365 Common - acetyltransferase, GNAT family CJE1508 16 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 57237271 Common - hypothetical protein CJE0261 3 None None None 57238495 Common ctsX transformation system protein CJE1645 5 None None None 57237331 Common clpX ATP-dependent protease ATP-binding subunit CJE0324 226 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 57237931 Common thiG thiazole synthase CJE1189 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 57238539 Common - oxidoreductase, putative CJE1689 130 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 57238572 Common - transporter, putative CJE1728 133 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 57238503 Common rplM 50S ribosomal protein L13 CJE1653 231 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 57238249 Common efp elongation factor P CJE0655 224 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 57238508 Pathogen - hypothetical protein CJE1658 1 None None None 57237464 Common frdA fumarate reductase CJE0458 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 57237761 Common - oxaloacetate decarboxylase, alpha subunit, putative CJE1011 183 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 57238493 Common ctsF general secretory pathway protein F CJE1643 149 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 57238218 Common ligA NAD-dependent DNA ligase LigA CJE0689 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 57237854 Pathogen - hypothetical protein CJE1109 1 None None None 57238182 Common hypB hydrogenase accessory protein HypB CJE0726 154 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 57238279 Common htpG heat shock protein 90 CJE0625 149 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 57237681 Common fbp fructose-1,6-bisphosphatase CJE0927 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 57238123 Common - hypothetical protein CJE1386 3 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 57236977 Common - conserved hypothetical protein TIGR00150 CJE0769 147 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 57238672 Common - ABC transporter, permease protein CJE1833 24 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 57238152 Common - ribosomal large subunit pseudouridine synthase, RluD subfamily CJE1416 215 COG0564 RluA, Pseudouridylate synthases, 23S RNA-specific Translation, ribosomal structure and biogenesis 57237383 Common ndk nucleoside diphosphate kinase CJE0377 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 57237582 Pathogen - hypothetical protein CJE0580 1 None None None 57237278 Pathogen - hypothetical protein CJE0268 1 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 57237572 Pathogen - hypothetical protein CJE0570 1 None None None 57237259 Common - phage uncharacterized protein CJE0249 14 COG5362 COG5362, Phage-related terminase General function prediction only 57238166 Pathogen - RloG protein, putative CJE1430 1 None None None 57237650 Common - peptidase, M16 family CJE0896 188 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 57237085 Pathogen cdtC cytolethal distending toxin, subunit C CJE0073 2 None None None 57237182 Common - TonB-dependent colicin lipoprotein, putative CJE0170 20 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 57238170 Pathogen - hypothetical protein CJE1434 1 None None None 57237913 Common - lipoprotein, putative CJE1170 4 COG3018 COG3018, Uncharacterized protein conserved in bacteria Function unknown 57237552 Common - site-specific DNA-methyltransferase, putative CJE0550 94 COG0863 COG0863, DNA modification methylase DNA replication, recombination, and repair 57238371 Common - aminotransferase, DegT family CJE1514 192 COG0399 WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane 57238385 Common - hypothetical protein CJE1531 4 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 57238242 Common proA gamma-glutamyl phosphate reductase CJE0662 188 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 57238604 Common rpmJ 50S ribosomal protein L36 CJE1763 19 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 57237032 Common - ABC transporter, permease protein CJE0830 38 COG4132 COG4132, ABC-type uncharacterized transport system, permease component General function prediction only 57238146 Common pyrH uridylate kinase CJE1410 227 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 57238253 Common flaG flagellar protein FlaG CJE0651 7 COG1334 FlaG, Uncharacterized flagellar protein FlaG Cell motility and secretion 57237459 Common - hypothetical protein CJE0453 9 COG3266 DamX, Uncharacterized protein conserved in bacteria Function unknown 57237071 Common fliA flagellar biosynthesis sigma factor CJE0058 99 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 57236944 Common - RNB-like protein CJE0734 192 COG0557 VacB, Exoribonuclease R Transcription 57238159 Pathogen - hypothetical protein CJE1423 1 None None None 57237048 Common - hypothetical protein CJE0033 26 COG2859 COG2859, Uncharacterized protein conserved in bacteria Function unknown 57238064 Common dctA C4-dicarboxylate transport protein CJE1326 157 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 57237250 Pathogen - lipoprotein, putative CJE0239 1 None None None 57237886 Pathogen - hypothetical protein CJE1143 1 None None None 57237346 Common - thiF family protein CJE0340 71 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 57237814 Pathogen - hypothetical protein CJE1069 1 None None None 57237173 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase CJE0161 210 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 57238378 Common ptmA flagellin modification protein A CJE1521 233 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 57237214 Pathogen - hypothetical protein CJE0203 1 None None None 57236988 Pathogen - invasion phenotype protein CJE0783 2 None None None 57238411 Common - GlnD family protein CJE1559 9 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 57237045 Common - hypothetical protein CJE0030 8 None None None 57238098 Common - sensor histidine kinase CJE1361 181 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 57236902 Common - acetyltransferase, GNAT family CJE1885 23 COG0456 RimI, Acetyltransferases General function prediction only 57238004 Common pglD general glycosylation pathway protein CJE1265 96 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 57237780 Common - methyl-accepting chemotaxis protein CJE1030 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 57236910 Common - hypothetical protein CJE1893 4 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 57238174 Pathogen - hypothetical protein CJE1437 1 None None None 57236970 Pathogen - hypothetical protein CJE0762 1 None None None 57238076 Common atpB F0F1 ATP synthase subunit A CJE1338 199 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 57237944 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A CJE1202 218 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 57238194 Common - hypothetical protein CJE0713 22 COG2845 COG2845, Uncharacterized protein conserved in bacteria Function unknown 57237955 Common lon ATP-dependent protease La CJE1216 224 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 57237452 Common - hypothetical protein CJE0446 7 None None None 57238395 Common ceuB enterochelin ABC transporter, permease protein CJE1541 190 COG4606 CeuB, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 57237963 Common thiE thiamine-phosphate pyrophosphorylase CJE1224 196 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 57238094 Common - sensor histidine kinase CJE1357 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms