Pseudomonas putida KT2440, complete genome NC_002947 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 26987647 Common - hypothetical protein PP_0911 2 None None None 26988803 Common - DNA-binding transcriptional regulator LysR PP_2078 181 COG0583 LysR, Transcriptional regulator Transcription 26986770 Nonpathogen - hypothetical protein PP_0025 1 None None None 26990371 Common - transcriptional regulator, LysR family PP_3660 192 COG0583 LysR, Transcriptional regulator Transcription 26989816 Common - hypothetical protein PP_3097 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 26989918 Common - hypothetical protein PP_3199 86 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 26987948 Common aspS aspartyl-tRNA synthetase PP_1213 249 COG0173 AspS, Aspartyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26988167 Common era GTP-binding protein Era PP_1434 241 COG1159 Era, GTPase General function prediction only 26989305 Common - amino acid transporter, putative PP_2586 158 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26991574 Common mutL DNA mismatch repair protein PP_4896 191 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 26988045 Common - hypothetical protein PP_1310 77 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 26989086 Common csuD type 1 pili usher protein CsuD PP_2362 39 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 26987206 Common rplX 50S ribosomal protein L24 PP_0465 212 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 26987373 Common - ISPpu15, transposase Orf2 PP_0637 66 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990737 Common - allantoate amidohydrolase PP_4034 85 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 26989474 Common - hypothetical protein PP_2755 126 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26989036 Common - lytic transglycosylase family protein PP_2312 76 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 26991312 Common mioC flavodoxin PP_4628 59 COG0716 FldA, Flavodoxins Energy production and conversion 26991559 Common vacB ribonuclease R PP_4880 200 COG0557 VacB, Exoribonuclease R Transcription 26988313 Nonpathogen - BNR domain protein PP_1581 3 None None None 26988352 Common surE stationary phase survival protein SurE PP_1620 186 COG0496 SurE, Predicted acid phosphatase General function prediction only 161378124 Common fliI flagellum-specific ATP synthase PP_4366 247 COG1157 FliI, Flagellar biosynthesis/type III secretory pathway ATPase Cell motility and secretion / Intracellular trafficking and secretion 26988161 Common mucA sigma factor algU negative regulatory protein MucA PP_1428 5 COG3073 RseA, Negative regulator of sigma E activity Signal transduction mechanisms 26988387 Common rumA 23S rRNA 5-methyluridine methyltransferase PP_1655 198 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 26988044 Common - hypothetical protein PP_1309 9 COG3105 COG3105, Uncharacterized protein conserved in bacteria Function unknown 26991736 Common - hypothetical protein PP_5060 1 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 26986932 Common - uroporphyrin-III C-methyltransferase, putative PP_0188 34 COG2959 HemX, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 26988910 Common - formate dehydrogenase, delta subunit, putative PP_2186 21 None None None 26987130 Common dnaG DNA primase PP_0388 215 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 26991504 Common - sensor histidine kinase/response regulator PP_4824 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991782 Common - hypothetical protein PP_5106 63 COG2363 COG2363, Uncharacterized small membrane protein Function unknown 26991269 Common - RNA methyltransferase, TrmH family PP_4585 23 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 26989406 Common - hypothetical protein PP_2687 82 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 26991645 Common metK S-adenosylmethionine synthetase PP_4967 213 COG0192 MetK, S-adenosylmethionine synthetase Coenzyme metabolism 26987114 Common - acetylornithine aminotransferase, putative PP_0372 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 26989508 Common - oxidoreductase, putative PP_2789 77 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 26991727 Common - hypothetical protein PP_5051 1 None None None 26990730 Common - hypothetical protein PP_4027 7 None None None 26990089 Common - hypothetical protein PP_3374 1 None None None 26991718 Common - hypothetical protein PP_5042 8 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 26989594 Common - hypothetical protein PP_2875 2 None None None 26991564 Common - hypothetical protein PP_4886 27 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 26987781 Common xcpP type II secretion pathway protein XcpP PP_1045 1 None None None 26990937 Common - periplasmic binding protein PP_4246 7 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26991001 Common - hydantoin racemase, putative PP_4310 43 COG4126 COG4126, Hydantoin racemase Amino acid transport and metabolism 26987680 Common fumC fumarate hydratase PP_0944 213 COG0114 FumC, Fumarase Energy production and conversion 26989251 Common - 5-nucleotidase, putative PP_2531 31 None None None 26990812 Common - hypothetical protein PP_4118 23 COG3714 COG3714, Predicted membrane protein Function unknown 26989560 Common - site-specific recombinase, phage integrase family PP_2841 202 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 26990817 Common nuoF NADH dehydrogenase I subunit F PP_4123 170 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 26987589 Common ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase PP_0853 188 COG0821 GcpE, Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis Lipid metabolism 26987232 Common - formate dehydrogenase accessory protein FdhE, putative PP_0492 32 COG3058 FdhE, Uncharacterized protein involved in formate dehydrogenase formation Posttranslational modification, protein turnover, chaperones 26990923 Common - xanthine dehydrogenase accessory factor, putative PP_4231 101 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 26988283 Nonpathogen - phage replication protein O, putative PP_1551 2 None None None 26990996 Common - periplasmic thiosulfate-binding protein PP_4305 89 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 26991715 Common - hypothetical protein PP_5039 63 COG3803 COG3803, Uncharacterized protein conserved in bacteria Function unknown 26987813 Common - conserved hypothetical protein TIGR00011 PP_1077 120 COG2606 EbsC, Uncharacterized conserved protein Function unknown 26991060 Common fleR response regulator FleR PP_4371 184 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990285 Common - monooxygenase, putative PP_3573 67 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 26989076 Common - hypothetical protein PP_2352 99 COG1485 COG1485, Predicted ATPase General function prediction only 26987365 Common - hypothetical protein PP_0629 20 COG3235 COG3235, Predicted membrane protein Function unknown 26991987 Common - hypothetical protein PP_5311 60 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 26986990 Common envZ osmolarity sensor protein EnvZ PP_0247 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987124 Common - carbon-nitrogen hydrolase family protein PP_0382 210 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26989819 Common - hypothetical protein PP_3100 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 26987349 Common - oxidoreductase, FAD-binding PP_0612 155 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26991086 Common - hypothetical protein PP_4397 3 COG5581 COG5581, Predicted glycosyltransferase Cell envelope biogenesis, outer membrane 26987357 Common - transcriptional regulator, GntR family PP_0620 122 COG2186 FadR, Transcriptional regulators Transcription 26990344 Common argC N-acetyl-gamma-glutamyl-phosphate reductase PP_3633 213 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 26986841 Common prlC oligopeptidase A PP_0096 123 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 26989069 Common - hypothetical protein PP_2345 5 COG3212 COG3212, Predicted membrane protein Function unknown 26988347 Common - transcriptional regulator, LysR family PP_1615 172 COG0583 LysR, Transcriptional regulator Transcription 26989155 Common - dihydropteridine reductase PP_2432 66 COG0778 NfnB, Nitroreductase Energy production and conversion 26991585 Common rhdA-2 thiosulfate sulfurtransferase PP_4907 142 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 26991220 Common - hypothetical protein PP_4535 14 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 26990176 Common - aldehyde dehydrogenase family protein PP_3463 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26990255 Common - iron-sulfur cluster-binding protein PP_3543 77 COG0348 NapH, Polyferredoxin Energy production and conversion 26989524 Common - monooxygenase, flavin-binding family PP_2805 67 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 26990569 Common - phage FluMu DNA circulation protein, putative PP_3864 21 COG4228 COG4228, Mu-like prophage DNA circulation protein General function prediction only 26990826 Common - hypothetical protein PP_4132 4 None None None 26989942 Common - hypothetical protein PP_3224 89 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 26991939 Common - GGDEF domain protein PP_5263 176 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26987108 Common bioD dithiobiotin synthetase PP_0366 143 COG0132 BioD, Dethiobiotin synthetase Coenzyme metabolism 26988877 Common - hypothetical protein PP_2153 4 None None None 26990535 Common modC molybdate ABC transporter, ATP-binding protein PP_3830 249 COG4148 ModC, ABC-type molybdate transport system, ATPase component Inorganic ion transport and metabolism 26987698 Common ttg2E toluene-tolerance protein PP_0962 4 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 26990595 Common - hypothetical protein PP_3890 5 None None None 26988824 Common - hypothetical protein PP_2099 28 COG3171 COG3171, Uncharacterized protein conserved in bacteria Function unknown 26986921 Common - hypothetical protein PP_0177 11 None None None 26988882 Common - DNA-binding heavy metal response regulator PP_2158 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988990 Common - DNA-directed RNA polymerase, bacteriophage and mitochondrial type PP_2266 6 COG5108 RPO41, Mitochondrial DNA-directed RNA polymerase Transcription 26989360 Common - iron-sulfur cluster-binding protein PP_2641 101 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 26988150 Common - tricarboxylate transport protein TctB, putative PP_1417 12 None None None 26990017 Common - outer membrane lipoprotein PP_3299 113 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26990112 Common - hypothetical protein PP_3397 28 None None None 26991673 Common - Holliday junction resolvase-like protein PP_4996 179 COG0816 COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) DNA replication, recombination, and repair 26987742 Common - outer membrane heme receptor, putative PP_1006 132 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26987501 Common - hypothetical protein PP_0765 18 COG4079 COG4079, Uncharacterized protein conserved in archaea Function unknown 26991128 Common - ISPpu14, transposase Orf2 PP_4442 40 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988528 Common - outer membrane efflux protein PP_1798 124 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26988160 Common algU RNA polymerase sigma factor AlgU PP_1427 174 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26991704 Common pip proline iminopeptidase PP_5028 131 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26990207 Common - hypothetical protein PP_3495 30 COG2384 COG2384, Predicted SAM-dependent methyltransferase General function prediction only 26991807 Common - sodium:dicarboxylate symporter family protein PP_5131 152 COG1823 COG1823, Predicted Na+/dicarboxylate symporter General function prediction only 26989450 Common - hypothetical protein PP_2731 1 None None None 26991071 Common flgJ peptidoglycan hydrolase PP_4382 73 COG1705 FlgJ, Muramidase (flagellum-specific) Cell motility and secretion / Intracellular trafficking and secretion 26988726 Common metZ O-succinylhomoserine sulfhydrylase PP_2001 209 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 26991144 Common - opine ABC transporter, periplasmic binding protein, putative PP_4458 199 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26987350 Common - hypothetical protein PP_0613 220 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 26987627 Common - hypothetical protein PP_0891 11 None None None 26991069 Common flgL flagellar hook-associated protein FlgL PP_4380 98 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 26987924 Common - conserved hypothetical protein TIGR00104 PP_1189 96 COG1720 COG1720, Uncharacterized conserved protein Function unknown 26989424 Nonpathogen - hypothetical protein PP_2705 1 None None None 26991663 Common - channel protein, hemolysin III family PP_4986 119 COG1272 COG1272, Predicted membrane protein, hemolysin III homolog General function prediction only 26989576 Common - hypothetical protein PP_2857 4 None None None 26992014 Common aspA aspartate ammonia-lyase PP_5338 227 COG1027 AspA, Aspartate ammonia-lyase Amino acid transport and metabolism 26987874 Common livG leucine/isoleucine/valine transporter ATP-binding subunit PP_1138 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26991377 Common - C4-type zinc finger protein, DksA/TraR family PP_4693 144 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 26989260 Common - oxidoreductase, short-chain dehydrogenase/reductase family PP_2540 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26988674 Common - hypothetical protein PP_1947 26 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 26989545 Common mexT transcriptional regulator MexT PP_2826 107 COG0583 LysR, Transcriptional regulator Transcription 26987050 Common - dipeptidase, putative PP_0308 101 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 26989663 Common - sensor histidine kinase PP_2944 131 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26989267 Common - transcriptional regulator, LysR family PP_2547 193 COG0583 LysR, Transcriptional regulator Transcription 26989962 Common mgtC magnesium transporter, MgtC family PP_3244 119 COG1285 SapB, Uncharacterized membrane protein Function unknown 26987281 Common eutB ethanolamine ammonia-lyase, heavy subunit PP_0543 55 COG4303 EutB, Ethanolamine ammonia-lyase, large subunit Amino acid transport and metabolism 26989297 Common - hypothetical protein PP_2578 12 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 26990116 Common - hypothetical protein PP_3402 1 None None None 26987452 Common - HlyD family secretion protein PP_0716 144 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26989520 Common - aldehyde dehydrogenase family protein PP_2801 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26991214 Common - hypothetical protein PP_4529 25 COG3514 COG3514, Uncharacterized protein conserved in bacteria Function unknown 26991753 Common - hypothetical protein PP_5077 23 COG3267 ExeA, Type II secretory pathway, component ExeA (predicted ATPase) Intracellular trafficking and secretion 26987640 Common - InaA protein PP_0904 7 None None None 26991354 Common - GGDEF domain protein PP_4670 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26988187 Common - anhydrase, family 3 protein PP_1454 206 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 26988908 Common - formate dehydrogenase, beta subunit, putative PP_2184 161 COG1894 NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit Energy production and conversion 26989902 Common - SCO1/SenC family protein/cytochrome c PP_3183 64 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 26990253 Common - transporter, MgtC family PP_3541 117 COG1285 SapB, Uncharacterized membrane protein Function unknown 26989567 Common ureF urease accessory protein UreF PP_2848 56 COG0830 UreF, Urease accessory protein UreF Posttranslational modification, protein turnover, chaperones 26992023 Common accC-2 acetyl-CoA carboxylase PP_5347 237 COG0439 AccC, Biotin carboxylase Lipid metabolism 26989860 Common - glycosyl transferase, WecB/TagA/CpsF family PP_3141 110 COG1922 WecG, Teichoic acid biosynthesis proteins Cell envelope biogenesis, outer membrane 26988692 Common holB DNA polymerase III subunit delta' PP_1966 217 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 26988954 Common - putative monovalent cation/H+ antiporter subunit A PP_2230 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 26991918 Common - sensor histidine kinase/GAF domain protein PP_5242 219 COG3899 COG3899, Predicted ATPase General function prediction only 26990703 Common - glutathione S-transferase domain protein PP_3998 79 COG0435 ECM4, Predicted glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26986988 Common - S1 RNA binding domain protein PP_0245 183 COG2183 Tex, Transcriptional accessory protein Transcription 26988063 Common mraW S-adenosyl-methyltransferase MraW PP_1329 215 COG0275 COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis Cell envelope biogenesis, outer membrane 26990358 Common - oxidoreductase, putative PP_3647 100 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 26991669 Common pilG type IV pili response regulator PilG PP_4992 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26991609 Common - hypothetical protein PP_4931 6 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 26991602 Common - serine protease, subtilase family PP_4924 128 COG4935 COG4935, Regulatory P domain of the subtilisin-like proprotein convertases and other proteases Posttranslational modification, protein turnover, chaperones 26987337 Common rpsT 30S ribosomal protein S20 PP_0600 135 COG0268 RpsT, Ribosomal protein S20 Translation, ribosomal structure and biogenesis 26987035 Common hisF imidazole glycerol phosphate synthase subunit HisF PP_0293 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 26990873 Common - hypothetical protein PP_4181 29 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 26989912 Common - hypothetical protein PP_3193 36 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 26987801 Common - hypothetical protein PP_1065 14 COG3136 GlpM, Uncharacterized membrane protein required for alginate biosynthesis General function prediction only 26990456 Common - transcriptional regulator, GntR family PP_3750 185 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26988894 Common - chorismate mutase family protein PP_2170 31 COG1605 PheA, Chorismate mutase Amino acid transport and metabolism 161378138 Common - TRAP dicarboxylate transporter, DctQ subunit, putative PP_1168 28 COG3090 DctM, TRAP-type C4-dicarboxylate transport system, small permease component Carbohydrate transport and metabolism 26988364 Common - hypothetical protein PP_1632 1 None None None 26988448 Common - transcriptional regulator, Cro/CI family PP_1716 3 COG3620 COG3620, Predicted transcriptional regulator with C-terminal CBS domains Transcription 26988749 Common sbcC exonuclease SbcC PP_2024 102 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 26987791 Common gspN type II secretion pathway protein GspN PP_1055 1 None None None 26987186 Common rplJ 50S ribosomal protein L10 PP_0445 210 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 26988932 Common phnX 2-phosphonoacetaldehyde hydrolase PP_2208 37 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 26989519 Common - diaminobutyrate--2-oxoglutarate aminotransferase PP_2800 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 26988700 Common uvrB excinuclease ABC subunit B PP_1974 225 COG0556 UvrB, Helicase subunit of the DNA excision repair complex DNA replication, recombination, and repair 26989627 Common - DNA-binding transcriptional regulator CsiR PP_2908 123 COG1802 GntR, Transcriptional regulators Transcription 26990837 Common gloB hydroxyacylglutathione hydrolase PP_4144 187 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 26990156 Common - glyceraldehyde-3-phosphate dehydrogenase, putative PP_3443 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26991025 Common motB flagellar motor protein MotD PP_4335 157 COG1360 MotB, Flagellar motor protein Cell motility and secretion 26987247 Common - hypothetical protein PP_0508 6 None None None 26991599 Common - transporter, NCS1 nucleoside transporter family PP_4921 30 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 26990136 Common xcpT-2 type II secretion pathway protein XcpT PP_3423 74 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26988816 Common - serine/threonine-protein kinase, putative PP_2091 151 COG0631 PTC1, Serine/threonine protein phosphatase Signal transduction mechanisms 26989326 Common - hypothetical protein PP_2607 48 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 26989895 Common - major facilitator family transporter PP_3176 137 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26988599 Common - hypothetical protein PP_1869 86 COG3384 COG3384, Uncharacterized conserved protein Function unknown 26991793 Common - hydrolase, alpha/beta fold family PP_5117 72 COG0429 COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 26990098 Common - gluconate dehydrogenase, putative PP_3383 66 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26991332 Common - nucleotide methyltransferase, putative PP_4648 74 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 26986817 Common qor-1 quinone oxidoreductase PP_0072 185 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26991465 Common - hypothetical protein PP_4785 67 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26989826 Common - hypothetical protein PP_3107 8 COG5435 COG5435, Uncharacterized conserved protein Function unknown 26991117 Common - transcriptional regulator, GntR family PP_4429 185 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26987972 Common dapA dihydrodipicolinate synthase PP_1237 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 26987906 Common - hypothetical protein PP_1171 101 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26990855 Common - hypothetical protein PP_4163 5 None None None 26988000 Common - hypothetical protein PP_1265 9 None None None 26990242 Common - hypothetical protein PP_3530 33 COG3257 GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization General function prediction only 26990808 Common - hypothetical protein PP_4114 7 None None None 26987805 Common - amino acid ABC transporter, permease protein PP_1069 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26991188 Common - DNA-binding response regulator PP_4503 217 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988157 Common - hypothetical protein PP_1424 41 COG2938 COG2938, Uncharacterized conserved protein Function unknown 26991417 Common - transcriptional regulator, GntR family PP_4734 152 COG2186 FadR, Transcriptional regulators Transcription 26990025 Common - hypothetical protein PP_3307 22 None None None 26986797 Common - metallo-beta-lactamase family protein PP_0052 193 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 26987511 Common - hypothetical protein PP_0775 14 None None None 26989682 Nonpathogen - hypothetical protein PP_2963 1 None None None 26991444 Common - acetyltransferase, GNAT family PP_4763 93 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 26991036 Common ddlA D-alanine--D-alanine ligase A PP_4346 210 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 26990903 Common - ABC export system, outer membrane protein PP_4211 113 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26989145 Common - carboxymuconolactone decarboxylase family protein PP_2422 79 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 26990399 Common - DNA helicase-related protein PP_3691 90 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 26988293 Common - phage holin, putative PP_1561 20 COG1403 McrA, Restriction endonuclease Defense mechanisms 26991018 Common - hypothetical protein PP_4328 6 None None None 26987798 Common - MutT/nudix family protein PP_1062 79 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26990040 Common hemB-2 delta-aminolevulinic acid dehydratase PP_3322 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 26988241 Common - hypothetical protein PP_1509 92 COG1801 COG1801, Uncharacterized conserved protein Function unknown 26988651 Nonpathogen - hypothetical protein PP_1923 4 None None None 26991771 Common proC-2 pyrroline-5-carboxylate reductase PP_5095 216 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 26988926 Common - hypothetical protein PP_2202 72 COG1238 COG1238, Predicted membrane protein Function unknown 26989829 Common - hypothetical protein PP_3110 1 None None None 26989135 Common - ParA family protein PP_2412 199 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26991454 Common - hypothetical protein PP_4773 4 None None None 26987818 Common bfr bacterioferritin PP_1082 105 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 26988677 Common - hypothetical protein PP_1950 69 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 161378146 Common rpsC 30S ribosomal protein S3 PP_0460 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 26988019 Common algE outer membrane protein AlgE PP_1284 3 None None None 26990385 Common - hypothetical protein PP_3676 3 None None None 26989431 Common - hypothetical protein PP_2712 16 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 26988609 Common - hypothetical protein PP_1879 1 None None None 26989796 Common - ABC transporter, permease protein, putative PP_3077 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 26986859 Common - ABC transporter, ATP-binding protein PP_0114 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 26989444 Common pfpI protease PfpI PP_2725 159 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 26986966 Common - monooxygenase, DszC family PP_0223 119 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987444 Common - betaine-aldehyde dehydrogenase, putative PP_0708 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987554 Common - hypothetical protein PP_0818 4 None None None 26987848 Common - hypothetical protein PP_1112 50 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988361 Common recA recombinase A PP_1629 215 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 26989939 Common - ABC transporter, permease protein PP_3221 218 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26988207 Common - hypothetical protein PP_1474 7 None None None 26990523 Common - periplamic phosphate-binding protein PP_3818 121 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 26991962 Common dut deoxyuridine 5'-triphosphate nucleotidohydrolase PP_5286 180 COG0756 Dut, dUTPase Nucleotide transport and metabolism 26990322 Common - hypothetical protein PP_3611 8 None None None 26989191 Common rplT 50S ribosomal protein L20 PP_2468 216 COG0292 RplT, Ribosomal protein L20 Translation, ribosomal structure and biogenesis 26986940 Common - ABC transporter, ATP-binding protein, putative PP_0196 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 26987399 Common - transcriptional regulator, AsnC family PP_0663 146 COG1522 Lrp, Transcriptional regulators Transcription 26989484 Common - sulfonate monooxygenase MsuD, putative PP_2765 94 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26988740 Common - hypothetical protein PP_2015 26 COG3139 COG3139, Uncharacterized protein conserved in bacteria Function unknown 26989707 Common - alcohol dehydrogenase, zinc-containing PP_2988 195 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26991198 Common - hypothetical protein PP_4513 29 COG3526 COG3526, Uncharacterized protein conserved in bacteria Posttranslational modification, protein turnover, chaperones 26988622 Common - hypothetical protein PP_1892 3 None None None 26991852 Common - hypothetical protein PP_5176 19 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987012 Common - sensor histidine kinase PP_0270 198 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987192 Common fusA elongation factor G PP_0451 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 26988601 Common htpX heat shock protein HtpX PP_1871 193 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 26989022 Common - hypothetical protein PP_2298 1 None None None 26990065 Common - hypothetical protein PP_3350 19 None None None 26989311 Common - ferric siderophore ABC transporter, ATP-binding protein PP_2592 249 COG4604 CeuD, ABC-type enterochelin transport system, ATPase component Inorganic ion transport and metabolism 26990268 Common - Na+/H+ antiporter family protein PP_3556 29 COG2056 COG2056, Predicted permease General function prediction only 26989673 Common - hypothetical protein PP_2954 7 COG1359 COG1359, Uncharacterized conserved protein Function unknown 26989750 Common - pyocin R2_PP, transcriptional activator prtN PP_3031 1 None None None 26989839 Common - oxidoreductase, aldo/keto reductase family PP_3120 199 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 26991764 Common priA primosome assembly protein PriA PP_5088 213 COG1198 PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase DNA replication, recombination, and repair 26988734 Common - 1-aminocyclopropane-1-carboxylate deaminase, putative PP_2009 22 COG2515 Acd, 1-aminocyclopropane-1-carboxylate deaminase Amino acid transport and metabolism 26987484 Common - hypothetical protein PP_0748 20 None None None 26989770 Common gpV pyocin R2_PP, tail spike protein PP_3051 24 COG4540 gpV, Phage P2 baseplate assembly protein gpV General function prediction only 26991014 Common ccmD cytochrome c-type biogenesis protein CcmD PP_4324 6 COG3114 CcmD, Heme exporter protein D Intracellular trafficking and secretion 26986831 Common - hypothetical protein PP_0086 38 COG3360 COG3360, Uncharacterized conserved protein Function unknown 26989999 Common - phenylacetic acid degradation protein PaaI, putative PP_3281 53 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 26991886 Common - alcohol dehydrogenase, zinc-containing PP_5210 151 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26987911 Nonpathogen - hypothetical protein PP_1176 1 None None None 26988156 Common - hypothetical protein PP_1423 117 COG0354 COG0354, Predicted aminomethyltransferase related to GcvT General function prediction only 26991333 Common - hypothetical protein PP_4649 4 None None None 26989318 Common - chemotaxis sensory transducer family protein PP_2599 110 COG2206 COG2206, HD-GYP domain Signal transduction mechanisms 26989540 Common - hypothetical protein PP_2821 14 None None None 26986917 Common - transcriptional factor-related protein PP_0173 11 COG1438 ArgR, Arginine repressor Transcription 26990047 Common - outer membrane ferric siderophore receptor, putative PP_3330 116 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26990612 Nonpathogen - hypothetical protein PP_3907 1 None None None 26990001 Common phaB enoyl-CoA hydratase PP_3283 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26990639 Common - transcriptional regulator, LysR family PP_3934 186 COG0583 LysR, Transcriptional regulator Transcription 26990895 Common - electron transfer flavoprotein-ubiquinone oxidoreductase, putative PP_4203 108 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 26988523 Common - glycosyl transferase, group 2 family protein PP_1792 81 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 26988584 Common - hypothetical protein PP_1854 14 COG0782 GreA, Transcription elongation factor Transcription 26988567 Common - hypothetical protein PP_1837 5 None None None 26990619 Common - hypothetical protein PP_3914 4 None None None 26989705 Common - oxidoreductase, putative PP_2986 155 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26991319 Common - hypothetical protein PP_4635 26 COG3007 COG3007, Uncharacterized paraquat-inducible protein B Function unknown 26987473 Common - hypothetical protein PP_0737 12 None None None 26988686 Nonpathogen - hypothetical protein PP_1959 2 None None None 26989799 Common aroF-2 phospho-2-dehydro-3-deoxyheptonate aldolase PP_3080 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 26989655 Common - ABC transporter, ATP-binding protein PP_2936 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 26990131 Common - hypothetical protein PP_3418 1 None None None 26990424 Common catR transcriptional activator CatR PP_3716 177 COG0583 LysR, Transcriptional regulator Transcription 26989456 Common - oxidoreductase, short-chain dehydrogenase/reductase family PP_2737 236 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 26988228 Common lysS lysyl-tRNA synthetase PP_1496 247 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 26988637 Common - peptidase, putative PP_1908 190 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26987394 Common - homocysteine S-methyltransferase family protein PP_0658 132 COG2040 MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) Amino acid transport and metabolism 26991092 Common bkdB branched-chain alpha-keto acid dehydrogenase subunit E2 PP_4403 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 26987288 Common - hypothetical protein PP_0550 56 COG0702 COG0702, Predicted nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26988591 Common - transcriptional regulator, LysR family PP_1861 135 COG0583 LysR, Transcriptional regulator Transcription 26991857 Common potF-2 putrescine ABC transporter, periplasmic putrescine-binding protein PP_5181 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26992071 Common - ISPpu14, transposase Orf3 PP_5396 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989449 Common - lipoprotein, putative PP_2730 36 None None None 26987689 Common - ABC transporter, ATP-binding protein, putative PP_0953 249 COG1137 YhbG, ABC-type (unclassified) transport system, ATPase component General function prediction only 26988769 Common - hypothetical protein PP_2044 6 COG2149 COG2149, Predicted membrane protein Function unknown 26987342 Common fkpB peptidyl-prolyl cis-trans isomerase, FKBP-type PP_0605 136 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 26989050 Common - universal stress protein family PP_2326 41 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26987267 Common xseB exodeoxyribonuclease VII small subunit PP_0529 9 COG1722 XseB, Exonuclease VII small subunit DNA replication, recombination, and repair 26991320 Common - acetyl-CoA acetyltransferase PP_4636 168 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 161378131 Common rpmI 50S ribosomal protein L35 PP_2467 140 COG0291 RpmI, Ribosomal protein L35 Translation, ribosomal structure and biogenesis 26991908 Common - hypothetical protein PP_5232 3 None None None 26988764 Common - acyl-CoA dehydrogenase, putative PP_2039 161 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26991411 Common grpE heat shock protein GrpE PP_4728 230 COG0576 GrpE, Molecular chaperone GrpE (heat shock protein) Posttranslational modification, protein turnover, chaperones 26991982 Common exbB ferric siderophore transport system protein ExbB PP_5306 126 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 26990557 Nonpathogen - hypothetical protein PP_3852 3 None None None 26987650 Common - GGDEF domain protein PP_0914 171 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26989039 Common greB transcription elongation factor GreB PP_2315 200 COG0782 GreA, Transcription elongation factor Transcription 26990714 Common clpS ATP-dependent Clp protease adaptor protein ClpS PP_4009 122 COG2127 COG2127, Uncharacterized conserved protein Function unknown 26990282 Common - porin, putative PP_3570 21 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 26986809 Common - TPR domain protein PP_0064 10 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 26986965 Common - monooxygenase, DszA family PP_0222 69 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26987722 Common gcvT-1 glycine cleavage system T protein PP_0986 178 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 26992000 Common - response regulator PP_5324 223 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26987631 Common - hypothetical protein PP_0895 19 None None None 26989851 Common - polysaccharide transporter, putative PP_3132 22 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 26988021 Common - alginate biosynthesis protein Alg44 PP_1286 3 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26987042 Common - metallopeptidase, putative PP_0300 4 None None None 26990462 Common - response regulator PP_3757 182 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990751 Common glgA glycogen synthase PP_4050 145 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 26991778 Common - hypothetical protein PP_5102 3 None None None 26989235 Common folE GTP cyclohydrolase I PP_2512 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 26991667 Common pilI type IV pili signal transduction protein PilI PP_4990 85 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26987675 Common - carbon-nitrogen hydrolase family protein PP_0939 187 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26991389 Common - ring-cleaving dioxygenase, putative PP_4705 21 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 26991942 Common - acetyl-CoA hydrolase/transferase family protein PP_5266 71 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 26990146 Common hpd 4-hydroxyphenylpyruvate dioxygenase PP_3433 78 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 26987670 Common mreC rod shape determining protein MreC PP_0934 150 COG1792 MreC, Cell shape-determining protein Cell envelope biogenesis, outer membrane 26988913 Common - hypothetical protein PP_2189 3 COG4575 ElaB, Uncharacterized conserved protein Function unknown 26991576 Common - conserved hypothetical protein TIGR00150 PP_4898 205 COG0802 COG0802, Predicted ATPase or kinase General function prediction only 26988071 Common murG N-acetylglucosaminyl transferase PP_1337 208 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 26989759 Common - pyocin R2_PP, holin PP_3040 1 None None None 26987432 Common - hypothetical protein PP_0696 1 None None None 26987867 Common - outer membrane lipoprotein, putative PP_1131 20 COG3133 SlyB, Outer membrane lipoprotein Cell envelope biogenesis, outer membrane 26988117 Common - BenF-like porin PP_1383 11 None None None 26989781 Common - pyocin R2_PP, tail length determination protein, putative PP_3062 18 COG3941 COG3941, Mu-like prophage protein General function prediction only 26990479 Common - hypothetical protein PP_3774 1 None None None 26991843 Common - hypothetical protein PP_5167 56 COG3545 COG3545, Predicted esterase of the alpha/beta hydrolase fold General function prediction only 26987297 Common accB acetyl-CoA carboxylase biotin carboxyl carrier protein subunit PP_0559 175 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 26990740 Common - dihydropyrimidine dehydrogenase PP_4038 144 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 26990775 Common - hypothetical protein PP_4074 50 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 26991104 Nonpathogen - hypothetical protein PP_4416 1 None None None 26987588 Common - transcriptional regulator, Cro/CI family PP_0852 61 COG1426 COG1426, Uncharacterized protein conserved in bacteria Function unknown 26989574 Common - hypothetical protein PP_2855 45 COG3271 COG3271, Predicted double-glycine peptidase General function prediction only 26989184 Common - hypothetical protein PP_2461 1 None None None 26990658 Common - potassium uptake protein, TrkH family PP_3953 131 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 26989879 Common - hypothetical protein PP_3160 9 None None None 26988098 Common - hypothetical protein PP_1364 1 None None None 26986875 Common - N-acetylmuramoyl-L-alanine amidase family protein PP_0130 110 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 26988070 Common ftsW cell division protein FtsW PP_1336 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 26988454 Common - ABC transporter, ATP-binding protein PP_1722 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26987089 Common - hypothetical protein PP_0347 6 None None None 26988100 Common - transcriptional regulator MvaT, P16 subunit PP_1366 4 None None None 26988130 Common - hypothetical protein PP_1396 5 COG1359 COG1359, Uncharacterized conserved protein Function unknown 26988742 Common pepN aminopeptidase N PP_2017 160 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 26990101 Common vgrG-2 vgrG protein PP_3386 52 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 26989128 Common - hypothetical protein PP_2405 83 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 26989847 Common - exopolysaccharide biosynthesis/transport protein, putative PP_3128 131 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26988629 Common - ExbD/TolR family protein PP_1899 33 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 26992020 Common - acetyltransferase, GNAT family PP_5344 62 COG0456 RimI, Acetyltransferases General function prediction only 26990304 Common - amino acid ABC transporter, periplasmic amino acid-binding protein PP_3593 170 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26990889 Common - transcriptional regulator, GntR family PP_4197 222 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26987860 Common - hypothetical protein PP_1124 20 COG5615 COG5615, Predicted integral membrane protein Function unknown 26990884 Common sdhD succinate dehydrogenase, hydrophobic membrane anchor protein PP_4192 52 COG2142 SdhD, Succinate dehydrogenase, hydrophobic anchor subunit Energy production and conversion 26989398 Common - quinoprotein ethanol dehydrogenase, putative PP_2679 82 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 26991656 Common - periplasmic binding protein, putative PP_4979 43 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26987027 Common - hypothetical protein PP_0285 72 COG2924 COG2924, Uncharacterized protein conserved in bacteria Function unknown 26987406 Common - transporter, bile acid/Na+ symporter family PP_0670 40 COG0798 ACR3, Arsenite efflux pump ACR3 and related permeases Inorganic ion transport and metabolism 26991976 Common - transcriptional regulator, LysR family PP_5300 120 COG0583 LysR, Transcriptional regulator Transcription 26990368 Common - nitrobenzoate reductase, putative PP_3657 51 COG0778 NfnB, Nitroreductase Energy production and conversion 26990484 Common - transcriptional regulator, LysR family PP_3779 184 COG0583 LysR, Transcriptional regulator Transcription 26991826 Common rpiA ribose-5-phosphate isomerase A PP_5150 165 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 26991864 Common - transcriptional regulator BkdR, putative PP_5188 162 COG1522 Lrp, Transcriptional regulators Transcription 26988401 Common - NLP/P60 family protein PP_1669 132 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 26991959 Common - periplasmic dipeptide-binding protein, putative PP_5283 204 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26991788 Common - zinc protease, putative PP_5112 196 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 26990313 Common - ketoglutarate semialdehyde dehydrogenase PP_3602 58 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26990799 Common - glutathione S-transferase family protein PP_4104 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26989216 Common - RadC family protein PP_2493 154 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 26987748 Common gltR-2 DNA-binding response regulator GltR PP_1012 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988839 Nonpathogen - hypothetical protein PP_2115 1 None None None 26989243 Common - ISPpu8, transposase PP_2522 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 26989083 Common - type 1 pili subunit CsuA/B protein, putative PP_2359 22 COG5430 COG5430, Uncharacterized secreted protein Function unknown 26989172 Common - hypothetical protein PP_2449 1 None None None 26991808 Common folA dihydrofolate reductase PP_5132 147 COG0262 FolA, Dihydrofolate reductase Coenzyme metabolism 26992066 Common - hypothetical protein PP_5390 8 None None None 26989106 Common - transporter, putative PP_2382 13 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 26990321 Common - hypothetical protein PP_3610 11 COG4335 COG4335, DNA alkylation repair enzyme DNA replication, recombination, and repair 26986763 Nonpathogen - hypothetical protein PP_0018 1 None None None 26989994 Common - ring-hydroxylation complex protein 2 PP_3276 42 COG3396 COG3396, Uncharacterized conserved protein Function unknown 26987998 Common - fusaric acid resistance protein, putative PP_1263 127 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26991799 Common coaD phosphopantetheine adenylyltransferase PP_5123 209 COG0669 CoaD, Phosphopantetheine adenylyltransferase Coenzyme metabolism 26986999 Common - formate dehydrogenase accessory protein FdhD PP_0257 132 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 26990555 Nonpathogen - hypothetical protein PP_3850 1 None None None 26991967 Common pyrE orotate phosphoribosyltransferase PP_5291 123 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 26991207 Common - transcriptional regulator, LysR family PP_4522 171 COG0583 LysR, Transcriptional regulator Transcription 26991678 Common hslU ATP-dependent protease ATP-binding subunit PP_5001 213 COG1220 HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit Posttranslational modification, protein turnover, chaperones 26987423 Common ispB octylprenyl diphosphate synthase PP_0687 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 26988371 Common - hypothetical protein PP_1639 26 COG3091 SprT, Uncharacterized protein conserved in bacteria Function unknown 26990280 Common - hypothetical protein PP_3568 32 None None None 26989558 Common - hypothetical protein PP_2839 47 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 26987116 Nonpathogen - hypothetical protein PP_0374 1 None None None 26987616 Common dppC dipeptide ABC transporter, permease protein PP_0880 216 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26990781 Common - hypothetical protein PP_4081 41 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 26987942 Common - hypothetical protein PP_1207 57 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 26987314 Common - lipoprotein, putative PP_0576 15 None None None 26990603 Common - hypothetical protein PP_3898 1 None None None 26988968 Common - hypothetical protein PP_2244 48 COG0730 COG0730, Predicted permeases General function prediction only 26990684 Common - ISPpu14, transposase Orf1 PP_3979 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988083 Common - hypothetical protein PP_1349 128 COG2096 COG2096, Uncharacterized conserved protein Function unknown 26988254 Common cspA-1 cold shock protein CspA PP_1522 175 COG1278 CspC, Cold shock proteins Transcription 26991288 Common - hypothetical protein PP_4604 50 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26990972 Common gad guanine deaminase PP_4281 160 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 26987965 Common - hypothetical protein PP_1230 18 COG5339 COG5339, Uncharacterized protein conserved in bacteria Function unknown 26989950 Common - acetyltransferase, GNAT family PP_3232 76 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 26990272 Common - transcriptional regulator, LysR family PP_3560 185 COG0583 LysR, Transcriptional regulator Transcription 26988464 Common minD septum site-determining protein MinD PP_1733 138 COG2894 MinD, Septum formation inhibitor-activating ATPase Cell division and chromosome partitioning 26991222 Common - acyl carrier protein phosphodiesterase, putative PP_4538 100 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 26990406 Common - hypothetical protein PP_3698 16 None None None 26991637 Common - sensory box protein/response regulator PP_4959 223 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26992058 Common - hypothetical protein PP_5382 1 None None None 26992048 Common - aldehyde dehydrogenase family protein PP_5372 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26990217 Common - hypothetical protein PP_3505 35 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 26987904 Common dctP TRAP dicarboxylate transporter, DctP subunit PP_1169 111 COG1638 DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component Carbohydrate transport and metabolism 26988976 Common - hypothetical protein PP_2252 3 None None None 26988941 Common fadB1x enoyl-CoA hydratase/isomerase FadB1x PP_2217 188 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26988006 Common - multidrug efflux MFS transporter, putative PP_1271 152 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987993 Common - epimerase, putative PP_1258 47 COG3938 COG3938, Proline racemase Amino acid transport and metabolism 26992083 Common - hypothetical protein PP_5408 2 None None None 26987984 Common - lipoprotein, putative PP_1249 6 None None None 26988977 Common - transcriptional regulator, GntR family PP_2253 62 COG1802 GntR, Transcriptional regulators Transcription 26991452 Common - hypothetical protein PP_4771 2 None None None 26990976 Common - transthyretin family protein PP_4285 63 COG2351 COG2351, Transthyretin-like protein General function prediction only 26987970 Common - AhpC/TSA family protein PP_1235 218 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 26990354 Common - oxidoreductase, putative PP_3643 120 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 26990276 Common - transcriptional regulator, AraC family PP_3564 103 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26992041 Common - cyclopropane-fatty-acyl-phospholipid synthase, putative PP_5365 146 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 26987467 Common - phosphatidylserine synthase, putative PP_0731 102 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 26987234 Common selB selenocysteine-specific translation elongation factor PP_0494 249 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 26988689 Common - site-specific recombinase, phage integrase family PP_1962 5 COG0582 XerC, Integrase DNA replication, recombination, and repair 26991243 Common def peptide deformylase PP_4559 212 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 26991294 Common - hypothetical protein PP_4610 43 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 26987967 Common - hypothetical protein PP_1232 124 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 26989352 Nonpathogen - hypothetical protein PP_2633 1 None None None 26991040 Common - aminotransferase, class V, NifS/IscS family PP_4350 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 26991425 Common hsdS type I restriction-modification system, S subunit PP_4742 61 COG0732 HsdS, Restriction endonuclease S subunits Defense mechanisms 26989207 Common - transcriptional regulator, ArsR family PP_2484 34 COG0640 ArsR, Predicted transcriptional regulators Transcription 26990197 Common - hypothetical protein PP_3485 21 None None None 26991740 Common betA choline dehydrogenase PP_5064 90 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26991629 Common - drug resistance transporter, EmrB/QacA family PP_4951 192 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988406 Common - nitroreductase family protein PP_1674 88 COG0778 NfnB, Nitroreductase Energy production and conversion 26990247 Common ggt-1 gamma-glutamyltransferase PP_3535 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 26987001 Common - hydrolase, haloacid dehalogenase-like family PP_0259 40 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 26989986 Common - MutT/nudix family protein PP_3268 53 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26987547 Common cyoups2 cyoups2 protein PP_0811 1 None None None 26988101 Common purU formyltetrahydrofolate deformylase PP_1367 218 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 26987833 Common metG methionyl-tRNA synthetase PP_1097 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26989531 Common - transporter, putative PP_2812 68 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 26990460 Common paaH 3-hydroxybutyryl-CoA dehydrogenase PP_3755 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 26991818 Common lgt prolipoprotein diacylglyceryl transferase PP_5142 209 COG0682 Lgt, Prolipoprotein diacylglyceryltransferase Cell envelope biogenesis, outer membrane 26991901 Common cyaY frataxin-like protein PP_5225 44 COG1965 CyaY, Protein implicated in iron transport, frataxin homolog Inorganic ion transport and metabolism 26988924 Common - hypothetical protein PP_2200 31 COG2318 DinB, Uncharacterized protein conserved in bacteria Function unknown 26989748 Common - DNA cytosine methyltransferase family protein PP_3029 20 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 26987486 Common - hypothetical protein PP_0750 5 None None None 26989621 Common - UDP-2,3-diacylglucosamine hydrolase PP_2902 81 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 26990610 Common - transcriptional regulator, LuxR family PP_3905 1 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26990860 Common - hypothetical protein PP_4168 4 None None None 26988630 Common lpxK tetraacyldisaccharide 4'-kinase PP_1900 117 COG1663 LpxK, Tetraacyldisaccharide-1-P 4'-kinase Cell envelope biogenesis, outer membrane 26988884 Common queF 7-cyano-7-deazaguanine reductase PP_2160 118 COG2904 COG2904, Uncharacterized protein conserved in bacteria Function unknown 26990392 Nonpathogen - hypothetical protein PP_3683 1 None None None 26989585 Common acpD azoreductase PP_2866 98 COG1182 AcpD, Acyl carrier protein phosphodiesterase Lipid metabolism 26990912 Common - non-ribosomal peptide synthetase domain protein, putative PP_4220 214 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 26990016 Common - CinA domain protein PP_3298 192 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 26990080 Common - acetolactate synthase PP_3365 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 26991747 Common - transcriptional regulator, LysR family PP_5071 192 COG0583 LysR, Transcriptional regulator Transcription 26989220 Common - hypothetical protein PP_2497 6 None None None 26990766 Common - 3-methylcrotonyl-CoA carboxylase, beta subunit, putative PP_4065 143 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 26991686 Common - hypothetical protein PP_5009 1 None None None 26991646 Common ligB NAD-dependent DNA ligase LigB PP_4968 217 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 26988565 Common - hypothetical protein PP_1835 1 None None None 26991234 Common fadD2 acyl-CoA synthetase PP_4550 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26990901 Common - ABC export system, membrane fusion protein PP_4209 155 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26987628 Common - phospholipase family protein PP_0892 151 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 26991173 Common acsA acetyl-CoA synthetase PP_4487 214 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 26989161 Common - hypothetical protein PP_2438 96 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 26990848 Common - hypothetical protein PP_4155 43 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 26991365 Common - hypothetical protein PP_4681 32 COG3098 COG3098, Uncharacterized protein conserved in bacteria Function unknown 26991949 Common - oxidoreductase, putative PP_5273 113 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26989840 Common - transcriptional regulator, LysR family PP_3121 191 COG0583 LysR, Transcriptional regulator Transcription 26988499 Common serC phosphoserine aminotransferase PP_1768 114 COG1932 SerC, Phosphoserine aminotransferase Coenzyme metabolism / Amino acid transport and metabolism 26987621 Common - dipeptide ABC transporter, periplasmic peptide-binding protein PP_0885 210 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26991122 Common dadA-1 D-amino acid dehydrogenase small subunit PP_4434 139 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26990863 Common - hypothetical protein PP_4171 118 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 26989168 Common - hypothetical protein PP_2445 114 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 26987846 Common - serine O-acetyltransferase, putative PP_1110 194 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 26990749 Common - hypothetical protein PP_4048 4 None None None 26990644 Common - porin, putative PP_3939 10 None None None 26990849 Common - transcriptional regulator, LysR family PP_4156 142 COG0583 LysR, Transcriptional regulator Transcription 26990989 Common hyi hydroxypyruvate isomerase PP_4298 85 COG3622 Hfi, Hydroxypyruvate isomerase Carbohydrate transport and metabolism 26986799 Common - hypothetical protein PP_0054 18 COG0730 COG0730, Predicted permeases General function prediction only 26988782 Common - citrate transporter PP_2057 37 COG2851 CitM, H+/citrate symporter Energy production and conversion 26988988 Common - sugar ABC transporter, periplasmic sugar-binding protein, putative PP_2264 39 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 26986789 Common - cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family PP_0044 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26989947 Common - periplasmic aliphatic sulfonate-binding protein, putative PP_3229 104 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26990108 Common - CAIB/BAIF family protein PP_3393 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 26990506 Common - cation ABC transporter, periplasmic cation-binding protein, putative PP_3801 155 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 26987002 Common nudE ADP-ribose diphosphatase NudE PP_0260 138 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26990164 Common - hypothetical protein PP_3451 4 None None None 26990722 Common - hypothetical protein PP_4017 58 COG2850 COG2850, Uncharacterized conserved protein Function unknown 26988145 Common - enoyl-CoA hydratase/isomerase family protein PP_1412 132 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26991284 Common moaB-2 molybdenum cofactor biosynthesis protein B PP_4600 186 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 26987175 Common anmK anhydro-N-acetylmuramic acid kinase PP_0434 120 COG2377 COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases Posttranslational modification, protein turnover, chaperones 26991472 Common - hypothetical protein PP_4792 68 COG1434 COG1434, Uncharacterized conserved protein Function unknown 26991485 Common mltB membrane-bound lytic murein transglycosylase B PP_4805 103 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 26986795 Common - hypothetical protein PP_0050 14 COG5455 COG5455, Predicted integral membrane protein Function unknown 26989724 Common - hypothetical protein PP_3005 23 COG5343 COG5343, Uncharacterized protein conserved in bacteria Function unknown 26987693 Common - KpsF/GutQ family protein PP_0957 180 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 26991926 Common - porin, putative PP_5250 7 None None None 26990178 Nonpathogen - hypothetical protein PP_3465 1 None None None 26990562 Common - hypothetical protein PP_3857 6 None None None 26990024 Nonpathogen - hypothetical protein PP_3306 1 None None None 26989717 Common - 2-dehydropantoate 2-reductase, putative PP_2998 111 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 26991699 Common - amino acid ABC transporter, permease protein PP_5023 177 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26988318 Common - killer protein, putative PP_1586 60 COG3549 HigB, Plasmid maintenance system killer protein General function prediction only 26989147 Common - 2'-5' RNA ligase, putative PP_2424 32 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 26990548 Common - hypothetical protein PP_3843 1 None None None 26988999 Nonpathogen - hypothetical protein PP_2275 1 None None None 26991612 Common - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase PP_4934 168 COG2870 RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase Cell envelope biogenesis, outer membrane 26988193 Common - hypothetical protein PP_1460 86 COG4137 COG4137, ABC-type uncharacterized transport system, permease component General function prediction only 26990470 Common - transcriptional regulator MvaT, P16 subunit, putative PP_3765 4 None None None 161378141 Common gatC aspartyl/glutamyl-tRNA amidotransferase subunit C PP_0932 149 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 26989765 Common - hypothetical protein PP_3046 7 None None None 26986901 Common - transcriptional regulator, LysR family PP_0157 168 COG0583 LysR, Transcriptional regulator Transcription 26991789 Common - hypothetical protein PP_5113 166 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 26990753 Common malQ 4-alpha-glucanotransferase PP_4052 119 COG1640 MalQ, 4-alpha-glucanotransferase Carbohydrate transport and metabolism 26988274 Common - hypothetical protein PP_1542 2 None None None 26987161 Common trpG anthranilate synthase component II PP_0420 236 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 26989294 Common - transcriptional regulator, LysR family PP_2574 191 COG0583 LysR, Transcriptional regulator Transcription 26986908 Common - hypothetical protein PP_0164 38 COG3672 COG3672, Predicted periplasmic protein Function unknown 26991993 Common - chorismate-pyruvate lyase, putative PP_5317 48 COG3161 UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) Coenzyme metabolism 26991433 Common - aminopeptidase, putative PP_4752 90 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 26991550 Common - azurin PP_4870 20 COG3241 COG3241, Azurin Energy production and conversion 26989338 Common - FHA domain protein PP_2619 11 COG3456 COG3456, Uncharacterized conserved protein, contains FHA domain Signal transduction mechanisms 26989671 Common - transcriptional regulator, LysR family PP_2952 158 COG0583 LysR, Transcriptional regulator Transcription 26988231 Common - hypothetical protein PP_1499 16 COG3930 COG3930, Uncharacterized protein conserved in bacteria Function unknown 26988863 Common topA DNA topoisomerase I PP_2139 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 26989981 Common - hypothetical protein PP_3263 53 COG0392 COG0392, Predicted integral membrane protein Function unknown 26990682 Nonpathogen - hypothetical protein PP_3977 2 None None None 26991536 Common - bacterioferritin, putative PP_4856 115 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 26987888 Common - membrane fusion protein, putative PP_1152 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26988789 Common - multidrug efflux RND membrane fusion protein PP_2064 172 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26987103 Common - competence protein ComF, putative PP_0361 90 COG1040 ComFC, Predicted amidophosphoribosyltransferases General function prediction only 26989278 Common - outer membrane efflux protein, putative PP_2558 141 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26989373 Nonpathogen - glutathione S-transferase, putative PP_2654 1 COG3788 COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily General function prediction only 26987656 Common xenB xenobiotic reductase B PP_0920 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26987075 Common - hypothetical protein PP_0333 35 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 26991534 Common lip lipase PP_4854 27 COG1075 LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold General function prediction only 26988479 Common - hypothetical protein PP_1748 56 COG1363 FrvX, Cellulase M and related proteins Carbohydrate transport and metabolism 26988640 Common rpmF 50S ribosomal protein L32 PP_1911 83 COG0333 RpmF, Ribosomal protein L32 Translation, ribosomal structure and biogenesis 26989227 Common dmpI 4-oxalocrotonate tautomerase PP_2504 40 COG1942 COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog General function prediction only 26986934 Common - DsbB family protein PP_0190 10 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 26988795 Common - transcriptional regulator, AraC family PP_2070 86 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26989626 Common - DNA-binding response regulator PP_2907 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988325 Common pyrH uridylate kinase PP_1593 236 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 26989613 Common - hypothetical protein PP_2894 4 None None None 26989187 Nonpathogen - hypothetical protein PP_2464 1 None None None 26988933 Common phnW 2-aminoethylphosphonate:pyruvate aminotransferase PP_2209 159 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 26991403 Common - conserved hypothetical protein TIGR00253 PP_4720 92 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 26988306 Common - hypothetical protein PP_1574 3 None None None 26991239 Common - hypothetical protein PP_4555 46 COG3795 COG3795, Uncharacterized protein conserved in bacteria Function unknown 26989434 Common arsH arsH protein PP_2715 53 COG0431 COG0431, Predicted flavoprotein General function prediction only 26989328 Common - transcriptional regulator, IclR family PP_2609 116 COG1414 IclR, Transcriptional regulator Transcription 26991494 Common - ATP-dependent protease La domain protein PP_4814 55 COG2802 COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease General function prediction only 26988618 Common - fimbrial protein PP_1888 9 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 26988213 Common hicA-1 hicA protein PP_1480 22 None None None 26989140 Common - iron ABC transporter, permease protein, putative PP_2417 191 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 26990087 Common cpxR DNA-binding response regulator CpxR PP_3372 220 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26990418 Nonpathogen - hypothetical protein PP_3710 2 None None None 26989017 Common - DNA maturase B PP_2293 5 COG5410 COG5410, Uncharacterized protein conserved in bacteria Function unknown 26987753 Common - sugar ABC transporter, permease protein PP_1017 142 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 26992064 Common - hypothetical protein PP_5388 31 COG5569 COG5569, Uncharacterized conserved protein Function unknown 26987872 Common - hypothetical protein PP_1136 6 None None None 26990579 Common - hypothetical protein PP_3874 6 COG5614 COG5614, Bacteriophage head-tail adaptor General function prediction only 26987384 Common - hypothetical protein PP_0648 52 COG3791 COG3791, Uncharacterized conserved protein Function unknown 26986890 Common - Na+/Pi cotransporter family protein PP_0145 86 COG1283 NptA, Na+/phosphate symporter Inorganic ion transport and metabolism 26988267 Common - methyltransferase, putative PP_1535 10 None None None 26991879 Common - 5-formyltetrahydrofolate cyclo-ligase family protein PP_5203 165 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 26988333 Common lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase PP_1601 163 COG1044 LpxD, UDP-3-O- 3-hydroxymyristoyl 26989500 Common - beta-ketoacyl synthase PP_2781 16 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26987754 Common - sugar ABC transporter, ATP-binding subunit PP_1018 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 26990705 Common serS seryl-tRNA synthetase PP_4000 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 26989634 Common - hypothetical protein PP_2915 10 COG3619 COG3619, Predicted membrane protein Function unknown 26990836 Common - hypothetical protein PP_4143 56 None None None 26991944 Common - transcriptional regulator, Cro/CI family PP_5268 124 COG1396 HipB, Predicted transcriptional regulators Transcription 26991303 Common - maleylacetoacetate isomerase, putative PP_4619 82 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26991997 Common phoR sensory box histidine kinase PhoR PP_5321 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988860 Common fadB multifunctional fatty acid oxidation complex subunit alpha PP_2136 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 26990237 Common - hypothetical protein PP_3525 4 None None None 26988334 Common fabZ (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase PP_1602 186 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 26986752 Common - conserved hypothetical protein TIGR00278 PP_0007 183 COG0759 COG0759, Uncharacterized conserved protein Function unknown 26988878 Common lolC lipoprotein releasing system, permease protein PP_2154 159 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 26990230 Common - hypothetical protein PP_3518 30 None None None 26986772 Common - hypothetical protein PP_0027 22 None None None 26987379 Nonpathogen - hypothetical protein PP_0643 1 None None None 26991590 Common parC DNA topoisomerase IV subunit A PP_4912 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 26989736 Common ogt methylated-DNA--protein-cysteine methyltransferase PP_3017 192 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 26992034 Common - hypothetical protein PP_5358 6 None None None 26990223 Common ilvE branched-chain amino acid aminotransferase PP_3511 200 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 26988288 Nonpathogen - hypothetical protein PP_1556 1 None None None 26989882 Common benC benzoate 1,2-dioxygenase ferredoxin reductase subunit PP_3163 141 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 26988137 Common bglX periplasmic beta-glucosidase PP_1403 127 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 26990150 Common - CBS domain protein PP_3437 215 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 26991517 Common - hypothetical protein PP_4837 1 None None None 26990184 Common csgG curli fiber membrane-associated lipoprotein CsgG PP_3472 14 COG1462 CsgG, Uncharacterized protein involved in formation of curli polymers Cell envelope biogenesis, outer membrane 26986868 Common polA DNA polymerase I PP_0123 216 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 26991913 Common - hypothetical protein PP_5237 1 None None None 26989512 Common - acyl-CoA dehydrogenase family protein PP_2793 156 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26989861 Common - sugar transferase, putative PP_3142 181 COG2148 WcaJ, Sugar transferases involved in lipopolysaccharide synthesis Cell envelope biogenesis, outer membrane 26987144 Common pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PP_0402 159 COG1995 PdxA, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 26987773 Common purL phosphoribosylformylglycinamidine synthase PP_1037 232 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 26988183 Common - activation/secretion protein, TPS family, putative PP_1450 42 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 26988542 Nonpathogen - hypothetical protein PP_1812 1 None None None 26988485 Common - hypothetical protein PP_1754 9 None None None 26989302 Common - acetyltransferase, GNAT family PP_2583 11 COG0456 RimI, Acetyltransferases General function prediction only 26988712 Common leuD isopropylmalate isomerase small subunit PP_1986 210 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 26987898 Common - oxidoreductase, FAD-binding PP_1163 157 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26989420 Common - transcriptional regulator, LysR family PP_2701 186 COG0583 LysR, Transcriptional regulator Transcription 26987537 Common - hypothetical protein PP_0801 6 None None None 26991260 Common - conserved hypothetical protein TIGR00370 PP_4576 99 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 26987741 Common hemO heme oxygenase PP_1005 9 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 26988852 Common chev-2 chemotaxis protein CheV PP_2128 160 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26986748 Common gidB glucose-inhibited division protein B PP_0003 204 COG0357 GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division Cell envelope biogenesis, outer membrane 26988309 Common - phage tail tape meausure protein, lambda family PP_1577 18 COG5281 COG5281, Phage-related minor tail protein Function unknown 26991933 Common - oxidoreductase, FAD-binding PP_5257 136 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26990447 Common mrdA-1 penicillin-binding protein 2 PP_3741 204 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 26990957 Common apt adenine phosphoribosyltransferase PP_4266 166 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 26987065 Common soxB sarcosine oxidase, beta subunit PP_0323 124 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26987326 Common - copper-binding protein, putative PP_0588 48 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 26987305 Common speA arginine decarboxylase PP_0567 71 COG1166 SpeA, Arginine decarboxylase (spermidine biosynthesis) Amino acid transport and metabolism 26988550 Common - benzoate transport protein PP_1820 59 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 26990672 Common - MutT/nudix family protein PP_3967 71 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26992051 Common - transcriptional regulator, LysR family PP_5375 167 COG0583 LysR, Transcriptional regulator Transcription 26986914 Common - ABC transporter, periplasmic binding protein PP_0170 21 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26988116 Common - hypothetical protein PP_1382 25 COG4539 COG4539, Predicted membrane protein Function unknown 26987815 Common argF ornithine carbamoyltransferase PP_1079 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 26991870 Common gcvT glycine cleavage system aminomethyltransferase T PP_5194 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 26987137 Common - hypothetical protein PP_0395 71 COG2719 SpoVR, Uncharacterized conserved protein Function unknown 26990651 Common - transcriptional regulator, MarR family PP_3946 85 COG1846 MarR, Transcriptional regulators Transcription 26987710 Nonpathogen - hypothetical protein PP_0974 1 None None None 26988647 Common - conserved hypothetical protein TIGR00247 PP_1918 185 COG1559 COG1559, Predicted periplasmic solute-binding protein General function prediction only 26991141 Common - opine ABC transporter, periplasmic binding protein, putative PP_4455 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26988176 Common lon-1 ATP-dependent protease La PP_1443 210 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 26991671 Common - hypothetical protein PP_4994 35 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 26987410 Common - putative ABC transporter ATP-binding protein PP_0674 248 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 26990747 Common - hypothetical protein PP_4046 3 None None None 26989340 Common - hypothetical protein PP_2621 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 26987439 Common - transmembrane sensor, putative PP_0703 42 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26989872 Common - hypothetical protein PP_3153 8 None None None 26990127 Common - methyl-accepting chemotaxis transducer/sensory box protein PP_3414 131 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26990194 Common - hypothetical protein PP_3482 8 None None None 26989691 Nonpathogen - hypothetical protein PP_2972 2 None None None 26989425 Nonpathogen - hypothetical protein PP_2706 1 None None None 26990675 Common - formaldehyde dehydrogenase, glutathione-independent, putative PP_3970 205 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 26988036 Common algW HtrA-like protease AlgW PP_1301 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 26990814 Common nuoB NADH dehydrogenase subunit B PP_4120 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 26991692 Common tatA twin argininte translocase protein A PP_5016 12 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 26990572 Common - phage tail tube protein, putative PP_3867 10 None None None 26989211 Common - succinic-semialdehyde dehydrogenase, putative PP_2488 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26989204 Common - hypothetical protein PP_2481 38 COG1359 COG1359, Uncharacterized conserved protein Function unknown 26989012 Common - phage tail fiber protein PP_2288 5 COG3064 TolA, Membrane protein involved in colicin uptake Cell envelope biogenesis, outer membrane 26988200 Common - sodium/hydrogen exchanger family protein PP_1467 97 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 26988732 Common - P-47-related protein PP_2007 3 None None None 26987606 Common - glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein, putative PP_0870 89 COG1732 OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) Cell envelope biogenesis, outer membrane 26987766 Common - hypothetical protein PP_1030 1 None None None 26987211 Common rplR 50S ribosomal protein L18 PP_0470 215 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 26989371 Common - hydratase/decarboxylase, putative PP_2652 42 COG3971 COG3971, 2-keto-4-pentenoate hydratase Secondary metabolites biosynthesis, transport, and catabolism 26989929 Common - ABC transporter, permease protein PP_3210 166 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 26986893 Common - hypothetical protein PP_0148 65 COG3791 COG3791, Uncharacterized conserved protein Function unknown 26987490 Common - hypothetical protein PP_0754 1 None None None 26987926 Common - S4 domain protein PP_1191 147 COG1187 RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases Translation, ribosomal structure and biogenesis 26990041 Common - CobW/P47K family protein PP_3323 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 26989522 Common dhaT 1,3-propanediol dehydrogenase PP_2803 176 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 26986746 Common parB chromosome partitioning protein ParB PP_0001 189 COG1475 Spo0J, Predicted transcriptional regulators Transcription 26988152 Common - porin, putative PP_1419 8 None None None 26986823 Nonpathogen - hypothetical protein PP_0078 1 None None None 26986847 Common - hypothetical protein PP_0102 1 None None None 26987724 Common gcvP-1 glycine dehydrogenase PP_0988 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 26991884 Common - ABC transporter, permease protein PP_5208 160 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 26987458 Common prsA ribose-phosphate pyrophosphokinase PP_0722 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 26987661 Common - hypothetical protein PP_0925 3 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26988665 Common - helicase, putative PP_1937 45 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 26990249 Common pobA 4-hydroxybenzoate 3-monooxygenase PP_3537 73 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 26987083 Common waaF heptosyltransferase II PP_0341 109 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 26991624 Common putP sodium/proline symporter PP_4946 182 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 26990719 Common trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase PP_4014 212 COG0482 TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain Translation, ribosomal structure and biogenesis 26991755 Common aroK shikimate kinase PP_5079 200 COG0703 AroK, Shikimate kinase Amino acid transport and metabolism 26991126 Common - ISPpu14, transposase Orf3 PP_4439 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988061 Common - tetrapyrrole methylase family protein PP_1326 208 COG0313 COG0313, Predicted methyltransferases General function prediction only 26991146 Common - transcriptional regulator, LysR family PP_4460 184 COG0583 LysR, Transcriptional regulator Transcription 26990824 Common nuoM NADH dehydrogenase subunit M PP_4130 210 COG1008 NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) Energy production and conversion 26991600 Common thiC thiamine biosynthesis protein ThiC PP_4922 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 26989675 Common - ribosomal protein S6 modification protein-related protein PP_2956 50 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 26991368 Common - hypothetical protein PP_4684 57 COG2187 COG2187, Uncharacterized protein conserved in bacteria Function unknown 26988538 Common pgi glucose-6-phosphate isomerase PP_1808 195 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 26989445 Common - hypothetical protein PP_2726 49 COG2323 COG2323, Predicted membrane protein Function unknown 26987239 Common - dTDP-4-rhamnose reductase-related protein PP_0500 143 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 26987513 Common - glutathione peroxidase, putative PP_0777 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 26988705 Common - hydrolase, putative PP_1979 28 COG1647 COG1647, Esterase/lipase General function prediction only 26987157 Common gph phosphoglycolate phosphatase PP_0416 208 COG0546 Gph, Predicted phosphatases General function prediction only 26990899 Common - hypothetical protein PP_4207 1 None None None 26988179 Common - TonB-dependent receptor PP_1446 112 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26988121 Common ttgR transcriptional regulator TtgR PP_1387 112 COG1309 AcrR, Transcriptional regulator Transcription 26989452 Common - hypothetical protein PP_2733 3 None None None 26991228 Common - hypothetical protein PP_4544 16 None None None 26987148 Common djlA DnaJ-like protein DjlA PP_0407 40 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 26991044 Common fliP flagellar biosynthesis protein FliP PP_4355 128 COG1338 FliP, Flagellar biosynthesis pathway, component FliP Cell motility and secretion / Intracellular trafficking and secretion 26988526 Common - hypothetical protein PP_1795 5 None None None 26989252 Nonpathogen - hypothetical protein PP_2532 1 None None None 26989972 Common - nucleosidase, putative PP_3254 63 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 26987594 Common - putative aminotransferase PP_0858 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26989665 Common - hypothetical protein PP_2946 108 COG1186 PrfB, Protein chain release factor B Translation, ribosomal structure and biogenesis 26990209 Common - peptidase, U32 family PP_3497 140 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 26990036 Nonpathogen - hypothetical protein PP_3318 1 None None None 26991820 Common - hypothetical protein PP_5144 48 COG3332 COG3332, Uncharacterized conserved protein Function unknown 26987256 Common nusB transcription antitermination protein NusB PP_0518 178 COG0781 NusB, Transcription termination factor Transcription 26989650 Common - conserved hypothetical protein TIGR00148 PP_2931 48 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 26990251 Common - transcriptional regulator, putative PP_3539 103 COG0789 SoxR, Predicted transcriptional regulators Transcription 26989960 Common - GGDEF domain protein PP_3242 176 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26988407 Common cobD cobalamin biosynthesis protein PP_1675 150 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 26988496 Common ubiG 3-demethylubiquinone-9 3-methyltransferase PP_1765 184 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 26989299 Common - hypothetical protein PP_2580 5 None None None 26990542 Common - SURF4 domain protein PP_3837 83 COG2259 COG2259, Predicted membrane protein Function unknown 26989657 Common - hypothetical protein PP_2938 41 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 26990967 Common - chromosome segregation SMC protein PP_4276 176 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 26987283 Common - aldehyde dehydrogenase family protein PP_0545 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26988947 Common - hypothetical protein PP_2223 1 None None None 26989362 Common - methyl-accepting chemotaxis transducer PP_2643 136 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26990586 Common - phage terminase, large subunit, putative PP_3881 46 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 26992039 Common - hypothetical protein PP_5363 9 None None None 26990940 Common - hypothetical protein PP_4249 37 COG3571 COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold General function prediction only 26988256 Common - rRNA large subunit methyltransferase A, putative PP_1524 56 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26987037 Common - glycine betaine/L-proline ABC transporter, permease protein PP_0295 204 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 26988355 Common rpoS RNA polymerase sigma factor RpoS PP_1623 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 26989097 Common - hypothetical protein PP_2373 1 None None None 26986838 Common - hypothetical protein PP_0093 16 COG4324 COG4324, Predicted aminopeptidase General function prediction only 26990930 Nonpathogen - hypothetical protein PP_4239 1 None None None 26992016 Common - acetylpolyamine aminohydrolase PP_5340 161 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 26987521 Common - putative sulfate transport protein CysZ PP_0785 41 COG2981 CysZ, Uncharacterized protein involved in cysteine biosynthesis Amino acid transport and metabolism 26990949 Common ccoP-2 cytochrome c oxidase, cbb3-type, subunit III PP_4258 88 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26989324 Common - hypothetical protein PP_2605 68 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 26990910 Common - lipase/esterase family protein PP_4218 124 COG0657 Aes, Esterase/lipase Lipid metabolism 26988676 Common - oxidoreductase, GMC family PP_1949 93 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26988956 Common - transcriptional regulator, Cro/CI family PP_2232 77 COG1396 HipB, Predicted transcriptional regulators Transcription 26991027 Common cheB chemotaxis-specific methylesterase PP_4337 213 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 26987557 Common - hypothetical protein PP_0821 31 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 26990708 Common lolA outer-membrane lipoprotein carrier protein PP_4003 83 COG2834 LolA, Outer membrane lipoprotein-sorting protein Cell envelope biogenesis, outer membrane 26990377 Common - metabolite MFS transporter, MHS family PP_3666 123 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989775 Common - pyocin R2_PP, tail fiber protein, putative PP_3056 7 COG5301 COG5301, Phage-related tail fibre protein General function prediction only 26989565 Common ureE urease accessory protein UreE PP_2846 60 COG2371 UreE, Urease accessory protein UreE Posttranslational modification, protein turnover, chaperones 26988906 Common - hypothetical protein PP_2182 4 COG3109 ProQ, Activator of osmoprotectant transporter ProP Signal transduction mechanisms 26989743 Common - hypothetical protein PP_3024 10 None None None 26991618 Common - hypothetical protein PP_4940 3 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26987101 Common - predicted kinase PP_0359 51 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 26990287 Common - outer membrane ferric siderophore receptor PP_3575 91 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26989153 Common - transcriptional regulator, AraC family PP_2430 86 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991062 Common fleQ transcriptional regulator FleQ PP_4373 171 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990110 Common - transcriptional regulator, LysR family PP_3395 183 COG0583 LysR, Transcriptional regulator Transcription 26990521 Common - polyamine ABC transporter, permease protein PP_3816 221 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 26988348 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein PP_1616 207 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 26991348 Common - transcriptional regulator, LysR family PP_4664 186 COG0583 LysR, Transcriptional regulator Transcription 26989459 Common - transcriptional regulator, MerR family PP_2740 37 COG0789 SoxR, Predicted transcriptional regulators Transcription 26988311 Common - hypothetical protein PP_1579 8 None None None 26989697 Common - hypothetical protein PP_2978 18 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 26987059 Common - methyl-accepting chemotaxis transducer PP_0317 143 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26986776 Nonpathogen - hypothetical protein PP_0031 1 None None None 26990677 Common - short chain dehydrogenase PP_3972 234 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26988345 Common - hypothetical protein PP_1613 64 COG2919 COG2919, Septum formation initiator Cell division and chromosome partitioning 26988859 Nonpathogen - hypothetical protein PP_2135 1 None None None 26990550 Common - ABC transporter, periplasmic polyamine-binding protein, putative PP_3845 129 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26990661 Common - hypothetical protein PP_3956 11 COG4729 COG4729, Uncharacterized conserved protein Function unknown 26991883 Common - ABC transporter, ATP-binding protein/permease protein, putative PP_5207 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 26987168 Common - hypothetical protein PP_0427 50 COG2941 CAT5, Ubiquinone biosynthesis protein COQ7 Coenzyme metabolism 26990624 Common - hypothetical protein PP_3919 2 None None None 26991653 Common - long-chain acyl-CoA thioester hydrolase family protein PP_4975 47 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 26991072 Common flgI flagellar basal body P-ring protein PP_4383 105 COG1706 FlgI, Flagellar basal-body P-ring protein Cell motility and secretion 26988759 Common - hypothetical protein PP_2034 17 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991493 Common - PAP2 family protein/DedA family protein PP_4813 121 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 26990425 Common - transcriptional regulator, LuxR family PP_3717 40 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 26990642 Nonpathogen - hypothetical protein PP_3937 1 None None None 26990051 Nonpathogen - hypothetical protein PP_3336 1 None None None 26989403 Common - hypothetical protein PP_2684 3 None None None 26990003 Common phaM PhaM protein PP_3285 193 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 26987839 Common - ATP-dependent helicase, DEAD box family PP_1103 129 COG1201 Lhr, Lhr-like helicases General function prediction only 26987245 Common - ABC efflux transporter, permease protein, putative PP_0506 32 COG0577 SalY, ABC-type antimicrobial peptide transport system, permease component Defense mechanisms 26987141 Common apaH diadenosine tetraphosphatase PP_0399 87 None None None 26987893 Common - acetolactate synthase PP_1157 222 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 26990819 Common nuoH NADH dehydrogenase subunit H PP_4125 190 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 26987208 Common rpsN 30S ribosomal protein S14 PP_0467 203 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 26991844 Common cysA sulfate ABC transporter, ATP-binding protein PP_5168 249 COG1118 CysA, ABC-type sulfate/molybdate transport systems, ATPase component Inorganic ion transport and metabolism 26992002 Common pstB phosphate ABC transporter, ATP-binding protein PP_5326 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 26991815 Common cadA-2 cadmium translocating P-type ATPase PP_5139 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 26988133 Common - hypothetical protein PP_1399 1 None None None 26987886 Common - hypothetical protein PP_1150 46 COG1289 COG1289, Predicted membrane protein Function unknown 26991837 Common - hypothetical protein PP_5161 46 COG2267 PldB, Lysophospholipase Lipid metabolism 26988912 Common - tRNA-(ms(2)io(6)a)-hydroxylase, putative PP_2188 40 COG4445 MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 26990171 Common - acyl-CoA synthetase PP_3458 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26989290 Common - ISPpu9, transposase PP_2570 30 None None None 26988750 Common sbcD exonuclease SbcD PP_2025 102 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 26987821 Common rnt ribonuclease T PP_1085 66 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 26987008 Common - hypothetical protein PP_0266 87 COG2957 COG2957, Peptidylarginine deiminase and related enzymes Amino acid transport and metabolism 26987331 Common - conserved hypothetical protein TIGR00257 PP_0593 130 COG1739 COG1739, Uncharacterized conserved protein Function unknown 26990888 Common - hypothetical protein PP_4196 1 None None None 26987360 Common - conserved hypothetical protein TIGR00726 PP_0624 180 COG1496 COG1496, Uncharacterized conserved protein Function unknown 26987737 Common arcA arginine deiminase PP_1001 55 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 26988295 Common - phage terminase, large subunit, putative PP_1563 46 COG4626 COG4626, Phage terminase-like protein, large subunit General function prediction only 26989837 Common - hypothetical protein PP_3118 67 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 26989471 Common - hypothetical protein PP_2752 29 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26989865 Common - oxidoreductase, putative PP_3146 133 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26987788 Common xcpW type II secretion pathway protein XcpW PP_1052 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26991335 Common cioA ubiquinol oxidase subunit I, cyanide insensitive PP_4651 163 COG1271 CydA, Cytochrome bd-type quinol oxidase, subunit 1 Energy production and conversion 26991725 Nonpathogen - hypothetical protein PP_5049 1 None None None 26989482 Nonpathogen - hypothetical protein PP_2763 1 None None None 26988385 Common - ISPpu10, transposase PP_1653 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26991463 Common thiE thiamine-phosphate pyrophosphorylase PP_4783 192 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 26990338 Nonpathogen - hypothetical protein PP_3627 1 None None None 26991572 Common hfq RNA-binding protein Hfq PP_4894 127 COG1923 Hfq, Uncharacterized host factor I protein General function prediction only 26989300 Common - hypothetical protein PP_2581 1 None None None 26989029 Common - hypothetical protein PP_2305 124 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 26989506 Common - transporter, putative PP_2787 47 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 26987367 Common coaE dephospho-CoA kinase PP_0631 206 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 26988204 Common thrC threonine synthase PP_1471 135 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 26987859 Common - hypothetical protein PP_1123 2 COG3776 COG3776, Predicted membrane protein Function unknown 26988620 Common - type 1 pili chaperone protein FimC PP_1890 24 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 26989047 Common - hypothetical protein PP_2323 25 COG2388 COG2388, Predicted acetyltransferase General function prediction only 26991446 Common - conserved hypothetical protein TIGR00275 PP_4765 88 COG2081 COG2081, Predicted flavoproteins General function prediction only 26989803 Common - outer membrane ferric siderophore receptor, putative PP_3084 92 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26989465 Common - hypothetical protein PP_2746 71 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26987376 Nonpathogen - hypothetical protein PP_0640 2 COG1106 COG1106, Predicted ATPases General function prediction only 26989752 Common - pyocin R2_PP, transcriptional repressor, CI/C2 family PP_3033 29 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 26991525 Common - branched-chain amino acid ABC transporter, ATP-binding protein, putative PP_4845 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26989024 Common clpP ATP-dependent Clp protease proteolytic subunit PP_2300 211 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26987842 Common - hypothetical protein PP_1106 56 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 26990801 Common gabP gamma-aminobutyrate transporter PP_4106 143 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26989495 Common - homocysteine S-methyltransferase family protein PP_2776 153 COG2040 MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) Amino acid transport and metabolism 26987217 Common rpsM 30S ribosomal protein S13 PP_0476 246 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 26989703 Common - hypothetical protein PP_2984 2 None None None 26988582 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase PP_1852 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26989635 Common ribE-2 riboflavin synthase subunit alpha PP_2916 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 26991527 Common - hypothetical protein PP_4847 13 None None None 26991101 Nonpathogen - hypothetical protein PP_4413 1 None None None 26990764 Common - acyl-CoA synthetase PP_4063 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26991012 Common ccmF cytochrome c-type biogenesis protein CcmF PP_4322 122 COG1138 CcmF, Cytochrome c biogenesis factor Posttranslational modification, protein turnover, chaperones 26991866 Common - type II secretion system protein PP_5190 162 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 26991156 Common algZ alginate biosynthesis transcriptional activator PP_4470 9 None None None 26991731 Common - rhodanese domain protein PP_5055 128 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 26988766 Common - transcriptional regulator, LysR family PP_2041 190 COG0583 LysR, Transcriptional regulator Transcription 26991513 Common - SURF1 domain protein PP_4833 68 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26990067 Common - arylsulfatase, putative PP_3352 86 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 26991423 Common hsdR type I restriction-modification system, R subunit PP_4740 142 COG4096 HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases Defense mechanisms 26988939 Common fadAx 3-ketoacyl-CoA thiolase PP_2215 172 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26990434 Common - amino acid transporter, AAT family PP_3727 176 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 26990614 Nonpathogen - hypothetical protein PP_3909 1 None None None 26990121 Nonpathogen - hypothetical protein PP_3407 1 None None None 26991989 Common hupA DNA-binding protein HU-alpha PP_5313 208 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 26990219 Common cobN cobaltochelatase PP_3507 89 COG1429 CobN, Cobalamin biosynthesis protein CobN and related Mg-chelatases Coenzyme metabolism 26989936 Common - monooxygenase, NtaA/SnaA/SoxA family PP_3218 65 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26989855 Common - serine O-acetyltransferase, putative PP_3136 203 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 26987194 Common rpsJ 30S ribosomal protein S10 PP_0453 247 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 26988532 Common wbpZ glycosyl transferase WbpZ PP_1802 179 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26988611 Common - hypothetical protein PP_1881 1 None None None 26991805 Common - hypothetical protein PP_5129 29 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 26987023 Common - amino acid ABC transporter, permease protein PP_0281 174 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 26988438 Common nirD nitrite reductase PP_1706 44 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 26988317 Common - antidote protein, putative PP_1585 61 COG3093 VapI, Plasmid maintenance system antidote protein General function prediction only 26986863 Common znuC zinc ABC transporter, ATP-binding protein ZnuC PP_0118 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 26986759 Common - transposase, putative PP_0014 59 None None None 26988327 Common uppS undecaprenyl diphosphate synthase PP_1595 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 26990574 Common - phage sheath protein, putative PP_3869 21 COG4386 COG4386, Mu-like prophage tail sheath protein gpL General function prediction only 26987112 Common - acyl-CoA dehydrogenase family protein PP_0370 148 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987392 Common - amino acid ABC transporter, permease protein, putative PP_0656 173 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26988185 Common - MutT/nudix family protein PP_1452 96 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26989259 Common - transcriptional regulator, LysR family PP_2539 178 COG0583 LysR, Transcriptional regulator Transcription 26990758 Common - outer membrane autotransporter barrel domain protein PP_4057 21 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26989547 Common - hypothetical protein PP_2828 1 None None None 26989598 Common - hypothetical protein PP_2879 2 None None None 26991267 Common - peptidase, putative PP_4583 103 COG1770 PtrB, Protease II Amino acid transport and metabolism 26987937 Common - hypothetical protein PP_1202 69 COG2898 COG2898, Uncharacterized conserved protein Function unknown 26991830 Common - oxidoreductase, FAD-binding, putative PP_5154 200 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 26989114 Common - transcriptional regulator, LysR family PP_2390 148 COG0583 LysR, Transcriptional regulator Transcription 26987952 Common ruvB Holliday junction DNA helicase B PP_1217 213 COG2255 RuvB, Holliday junction resolvasome, helicase subunit DNA replication, recombination, and repair 26987223 Common - bacterioferritin PP_0482 100 COG2193 Bfr, Bacterioferritin (cytochrome b1) Inorganic ion transport and metabolism 26987344 Common - type IV pili biogenesis protein FimT, putative PP_0607 2 COG4970 FimT, Tfp pilus assembly protein FimT Cell motility and secretion / Intracellular trafficking and secretion 26990712 Common infA translation initiation factor IF-1 PP_4007 214 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 26988509 Common - lipopolysaccharide ABC export system, permease protein PP_1778 116 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 26991395 Common infB translation initiation factor IF-2 PP_4712 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 26989316 Common - hypothetical protein PP_2597 3 COG1309 AcrR, Transcriptional regulator Transcription 26990144 Common - ThiJ/PfpI family protein PP_3431 83 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 26987508 Common - metallo-beta-lactamase family protein PP_0772 217 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 26989647 Common - hypothetical protein PP_2928 52 COG1748 LYS9, Saccharopine dehydrogenase and related proteins Amino acid transport and metabolism 26991906 Common xerC site-specific tyrosine recombinase XerC PP_5230 224 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 26992094 Common atpB F0F1 ATP synthase subunit A PP_5419 199 COG0356 AtpB, F0F1-type ATP synthase, subunit a Energy production and conversion 26991665 Common - type IV pili sensor histidine kinase/response regulator, PilL/ChpA fusion protein PP_4988 223 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 26987292 Common acoB acetoin dehydrogenase, beta subunit PP_0554 208 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 26990232 Common - hypothetical protein PP_3520 5 None None None 26987672 Common maf Maf-like protein PP_0936 198 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 26990239 Common - transcriptional regulator, TetR family PP_3527 88 COG1309 AcrR, Transcriptional regulator Transcription 26990317 Common qor-2 quinone oxidoreductase PP_3606 155 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26991854 Common potH putrescine ABC transporter, permease protein PP_5178 192 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 26990333 Common - isoquinoline 1-oxidoreductase, beta subunit, putative PP_3622 114 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 26988787 Common - hypothetical protein PP_2062 8 None None None 26990637 Common - GGDEF domain protein PP_3932 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26987913 Nonpathogen - hypothetical protein PP_1178 1 None None None 26989037 Common - hypothetical protein PP_2313 24 COG2259 COG2259, Predicted membrane protein Function unknown 26991258 Common - hypothetical protein PP_4574 58 COG3825 COG3825, Uncharacterized protein conserved in bacteria Function unknown 26989693 Common - hypothetical protein PP_2974 55 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 161378133 Common rpsA 30S ribosomal protein S1 PP_1772 222 COG0539 RpsA, Ribosomal protein S1 Translation, ribosomal structure and biogenesis 26987716 Common pepA leucyl aminopeptidase PP_0980 188 COG0260 PepB, Leucyl aminopeptidase Amino acid transport and metabolism 26986981 Common ssuD alkanesulfonate monooxygenase PP_0238 85 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26987491 Common - hypothetical protein PP_0755 1 None None None 26989969 Common - hypothetical protein PP_3251 9 None None None 26991928 Common - hypothetical protein PP_5252 100 COG1574 COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 26988363 Common - conserved hypothetical protein TIGR00730 PP_1631 102 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 26990454 Common glcG glcG protein PP_3748 70 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 26991795 Common - transcriptional regulator, TetR family PP_5119 45 COG1309 AcrR, Transcriptional regulator Transcription 26990861 Common gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase PP_4169 212 COG0240 GpsA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 26990875 Common - hypothetical protein PP_4183 25 COG3821 COG3821, Predicted membrane protein Function unknown 26988246 Common - hypothetical protein PP_1514 13 None None None 26988822 Common - sensory box protein PP_2097 189 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26987184 Common rplK 50S ribosomal protein L11 PP_0443 246 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 26992025 Nonpathogen - hypothetical protein PP_5349 1 None None None 26989592 Common - hypothetical protein PP_2873 65 COG0393 COG0393, Uncharacterized conserved protein Function unknown 26987351 Common - allantoate amidohydrolase PP_0614 85 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 26989828 Nonpathogen - hypothetical protein PP_3109 1 None None None 26989264 Nonpathogen - hypothetical protein PP_2544 1 None None None 26987092 Common - outer membrane ferrichrome-iron receptor PP_0350 114 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26991583 Common - flagellar motor protein MotA PP_4905 105 COG1291 MotA, Flagellar motor component Cell motility and secretion 26989116 Common polB DNA polymerase II PP_2393 64 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 26991734 Common - carboxyl-terminal protease PP_5058 182 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 26987167 Common - hypothetical protein PP_0426 13 None None None 26986963 Common - ABC transporter, ATP-binding protein PP_0220 249 COG1135 AbcC, ABC-type metal ion transport system, ATPase component Inorganic ion transport and metabolism 26989350 Nonpathogen - hypothetical protein PP_2631 1 None None None 26990125 Common - DNA-binding response regulator, LuxR family PP_3412 212 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26991137 Common - hypothetical protein PP_4451 5 None None None 26988322 Common map methionine aminopeptidase PP_1590 247 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 26988418 Common - glutathione peroxidase PP_1686 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 26988896 Common - hypothetical protein PP_2172 1 COG4907 COG4907, Predicted membrane protein Function unknown 26991216 Common - hypothetical protein PP_4531 1 None None None 26989090 Common - antibiotic MFS transporter, putative PP_2366 90 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990452 Common glcE glycolate oxidase FAD binding subunit PP_3746 159 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 26991375 Common sfsA sugar fermentation stimulation protein A PP_4691 108 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 26988120 Common ttgA multidrug/solvent RND membrane fusion protein PP_1386 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26990240 Common - ABC transporter, periplasmic substrate-binding protein, putative PP_3528 68 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26991456 Common - hypothetical protein PP_4775 8 None None None 26987682 Common sodA superoxide dismutase (Mn) PP_0946 204 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 26988081 Common - glutathione S-transferase family protein PP_1347 63 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26990114 Common alkB alkylated DNA repair protein AlkB PP_3400 56 COG3145 AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair 26991321 Common - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase family protein PP_4637 103 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 26990939 Common - hypothetical protein PP_4248 52 COG3123 COG3123, Uncharacterized protein conserved in bacteria Function unknown 26988840 Common - cell developmental protein SirA PP_2116 112 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 26987578 Common iscS cysteine desulfurase PP_0842 239 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 26987213 Common rpmD 50S ribosomal protein L30 PP_0472 95 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 26989385 Common - hypothetical protein PP_2666 14 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 26987649 Common - hypothetical protein PP_0913 35 COG3487 IrpA, Uncharacterized iron-regulated protein Inorganic ion transport and metabolism 26989143 Common - outer membrane ferric siderophore receptor PP_2420 117 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26990914 Common - syrP protein, putative PP_4222 22 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26987642 Common - multidrug efflux protein PP_0906 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26988159 Common nadB L-aspartate oxidase PP_1426 226 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 26988393 Common - dehydrogenase subunit, putative PP_1661 77 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26988042 Common - transcriptional regulator, AsnC family PP_1307 155 COG1522 Lrp, Transcriptional regulators Transcription 26989992 Common phaI ring-hydroxylation complex protein 4 PP_3274 154 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26990383 Common - hypothetical protein PP_3672 161 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 26989272 Common - tyrosine decarboxylase, putative PP_2552 92 COG0076 GadB, Glutamate decarboxylase and related PLP-dependent proteins Amino acid transport and metabolism 26987696 Common ttg2C toluene tolerance ABC transporter, periplasmic substrate-binding protein PP_0960 99 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 26989510 Common - aminoglycoside phosphotransferase PP_2791 58 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 26987794 Common - hypothetical protein PP_1058 15 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 26988597 Common - hypothetical protein PP_1867 33 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 26986959 Common - sensory box protein PP_0216 187 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26987230 Common - formate dehydrogenase, iron-sulfur subunit PP_0490 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 26991415 Common - hypothetical protein PP_4732 102 COG2867 COG2867, Oligoketide cyclase/lipid transport protein Lipid metabolism 26987803 Common - sensor histidine kinase PP_1067 192 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26988377 Common arsC-1 arsenate reductase PP_1645 113 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 26990960 Common dnaX DNA polymerase III subunits gamma and tau PP_4269 248 COG2812 DnaX, DNA polymerase III, gamma/tau subunits DNA replication, recombination, and repair 26989002 Nonpathogen - hypothetical protein PP_2278 1 None None None 26988144 Common - GGDEF domain protein PP_1411 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26990909 Common fpvA outer membrane ferripyoverdine receptor PP_4217 104 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26991191 Common - nitroreductase family protein PP_4506 99 COG0778 NfnB, Nitroreductase Energy production and conversion 26991161 Common astE succinylglutamate desuccinylase PP_4475 24 COG2988 COG2988, Succinylglutamate desuccinylase Amino acid transport and metabolism 26991762 Common - thermonuclease family protein PP_5086 54 COG1525 COG1525, Micrococcal nuclease (thermonuclease) homologs DNA replication, recombination, and repair 26990893 Common - electron transfer flavoprotein, alpha subunit PP_4201 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 26986905 Common - transmembrane sensor, putative PP_0161 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26991091 Common bkdA2 2-oxoisovalerate dehydrogenase, beta subunit PP_4402 168 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 26990537 Common - carbon storage regulator PP_3832 82 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 26988589 Common ohr organic hydroperoxide resistance protein PP_1859 96 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 26987080 Common aceF dihydrolipoamide acetyltransferase PP_0338 201 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 26987495 Common - hypothetical protein PP_0759 128 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 26988814 Common oprF outer membrane protein OprF PP_2089 166 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26989537 Common mexD multidrug efflux RND transporter MexD PP_2818 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26991016 Common ccmB heme ABC export system, permease protein CcmB PP_4326 39 COG2386 CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 26991084 Common flgM negative regulator of flagellin synthesis FlgM PP_4395 19 COG2747 FlgM, Negative regulator of flagellin synthesis (anti-sigma28 factor) Transcription / Cell motility and secretion / Intracellular trafficking and secretion 26990480 Common - sarcosine oxidase, putative PP_3775 38 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26988801 Common - hypothetical protein PP_2076 3 None None None 26990328 Nonpathogen - hypothetical protein PP_3617 1 None None None 26987850 Common - SEC-C domain protein PP_1114 62 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 26989074 Common - transcriptional regulator, LysR family PP_2350 175 COG0583 LysR, Transcriptional regulator Transcription 26989193 Common pheT phenylalanyl-tRNA synthetase subunit beta PP_2470 248 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 26986857 Common - ABC transporter, periplasmic binding protein, putative PP_0112 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 26988607 Common - GAF domain protein PP_1877 82 COG1956 COG1956, GAF domain-containing protein Signal transduction mechanisms 26991121 Common - amino acid MFS transporter PP_4433 171 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990773 Common - hypothetical protein PP_4072 22 COG4299 COG4299, Uncharacterized protein conserved in bacteria Function unknown 26988679 Common - metallo-beta-lactamase family protein PP_1952 73 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 26987638 Common - sensor histidine kinase PP_0902 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989230 Common - oxidoreductase, short-chain dehydrogenase/reductase family PP_2507 10 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26987896 Common - lipoprotein, putative PP_1161 17 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 26990783 Common - hypothetical protein PP_4084 4 COG5435 COG5435, Uncharacterized conserved protein Function unknown 26987469 Common prfA peptide chain release factor 1 PP_0733 216 COG0216 PrfA, Protein chain release factor A Translation, ribosomal structure and biogenesis 26987566 Common - acetyltransferase, GNAT family PP_0830 7 COG0456 RimI, Acetyltransferases General function prediction only 26988336 Common lpxB lipid-A-disaccharide synthase PP_1604 139 COG0763 LpxB, Lipid A disaccharide synthetase Cell envelope biogenesis, outer membrane 26989629 Common - hypothetical protein PP_2910 126 COG0579 COG0579, Predicted dehydrogenase General function prediction only 26986977 Common oprE porin E PP_0234 10 None None None 26990474 Nonpathogen - hypothetical protein PP_3769 1 COG5178 PRP8, U5 snRNP spliceosome subunit RNA processing and modification 26988466 Common htrB lipid A biosynthesis lauroyl acyltransferase PP_1735 103 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 26989387 Common - ABC efflux transporter, ATP-binding protein PP_2668 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 26991545 Common - branched-chain amino acid ABC transporter, permease protein PP_4865 156 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 26990635 Nonpathogen - hypothetical protein PP_3930 1 None None None 26990278 Common - major facilitator family transporter PP_3566 61 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989257 Common - hypothetical protein PP_2537 1 None None None 26991562 Nonpathogen - hypothetical protein PP_4883 1 None None None 26988710 Common - transcriptional regulator, LysR family PP_1984 193 COG0583 LysR, Transcriptional regulator Transcription 26989542 Common - methyl-accepting chemotaxis transducer PP_2823 140 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989393 Common qedH quinoprotein ethanol dehydrogenase PP_2674 76 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 26988515 Common rmlD dTDP-4-dehydrorhamnose reductase PP_1784 166 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 26989236 Common - hypothetical protein PP_2513 56 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 26991042 Common fliR flagellar biosynthesis protein FliR PP_4353 100 COG1684 FliR, Flagellar biosynthesis pathway, component FliR Cell motility and secretion / Intracellular trafficking and secretion 26989162 Common ahpC alkyl hydroperoxide reductase, C subunit PP_2439 221 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 26992036 Common - hypothetical protein PP_5360 14 None None None 26988563 Common - hypothetical protein PP_1833 1 None None None 26988097 Common - hypothetical protein PP_1363 1 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 26988951 Common - putative monovalent cation/H+ antiporter subunit E PP_2227 45 COG1863 MnhE, Multisubunit Na+/H+ antiporter, MnhE subunit Inorganic ion transport and metabolism 26991635 Common - hypothetical protein PP_4957 9 COG4519 COG4519, Uncharacterized protein conserved in bacteria Function unknown 26992068 Common - hypothetical protein PP_5392 90 COG3391 COG3391, Uncharacterized conserved protein Function unknown 26992042 Common lpd3 dihydrolipoamide dehydrogenase PP_5366 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 26988497 Common mtnA methylthioribose-1-phosphate isomerase PP_1766 130 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 26989333 Common vgrG-1 vgrG protein PP_2614 53 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 26987614 Common dppF dipeptide transporter ATP-binding subunit PP_0878 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 26990686 Common - ISPpu14, transposase Orf3 PP_3981 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989944 Common - acyl-CoA dehydrogenase-related protein PP_3226 144 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987063 Common - low-specificity L-threonine aldolase PP_0321 114 COG2008 GLY1, Threonine aldolase Amino acid transport and metabolism 26988050 Common rplM 50S ribosomal protein L13 PP_1315 230 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 26987497 Common - hypothetical protein PP_0761 111 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 26991292 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_4608 88 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988577 Common - TonB-dependent receptor PP_1847 96 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26988982 Common - sensory box protein PP_2258 187 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26988922 Common - hypothetical protein PP_2198 121 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 26990839 Common - peptide ABC transporter, periplamic peptide-binding protein PP_4146 174 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 26987545 Common dsbB disulfide bond formation protein B PP_0809 15 COG1495 DsbB, Disulfide bond formation protein DsbB Posttranslational modification, protein turnover, chaperones 26988057 Common - lipoprotein, putative PP_1322 68 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 26988490 Common - hypothetical protein PP_1759 27 COG3531 COG3531, Predicted protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 26987623 Common - sensor histidine kinase PP_0887 50 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989810 Common - hypothetical protein PP_3091 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 26990696 Nonpathogen - hypothetical protein PP_3991 1 None None None 26988139 Nonpathogen - hypothetical protein PP_1405 1 None None None 26986802 Common - major facilitator family transporter PP_0057 130 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988930 Common - peptidase, U32 family PP_2206 139 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 26989715 Nonpathogen - hypothetical protein PP_2996 1 None None None 26987928 Nonpathogen - hypothetical protein PP_1193 1 None None None 26988366 Common - hypothetical protein PP_1634 35 COG3148 COG3148, Uncharacterized conserved protein Function unknown 26989606 Common - catalase, putative PP_2887 116 COG0753 KatE, Catalase Inorganic ion transport and metabolism 26987515 Common - methyl-accepting chemotaxis transducer/sensory box protein PP_0779 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26990274 Common - hypothetical protein PP_3562 41 COG3773 SleB, Cell wall hydrolyses involved in spore germination Cell envelope biogenesis, outer membrane 26991171 Common - basic amino acid ABC transporter, permease protein PP_4485 172 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 26989608 Common - transmembrane regulator PrtR, putative PP_2889 21 COG5662 COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) Transcription 26989757 Common - pyocin R2_PP, traC domain protein PP_3038 59 COG5545 COG5545, Predicted P-loop ATPase and inactivated derivatives General function prediction only 26988226 Common - chemotaxis-specific methylesterase PP_1493 174 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 26989503 Common - oxidoreductase, short-chain dehydrogenase/reductase family PP_2784 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26990014 Common - YeeE/YedE family protein PP_3296 68 COG2391 COG2391, Predicted transporter component General function prediction only 26988979 Common - C4-dicarboxylate transporter DctA PP_2255 161 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 26990504 Common - hypothetical protein PP_3799 11 None None None 26991413 Common fur transcriptional regulator Fur PP_4730 185 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 26991502 Common purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PP_4822 219 COG0138 PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) Nucleotide transport and metabolism 26988780 Common - hypothetical protein PP_2055 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 26988107 Common - low-affinity inorganic phosphate transporter PP_1373 155 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 26988702 Common - HlyD family secretion protein PP_1976 149 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26990980 Common - hypothetical protein PP_4289 38 COG3748 COG3748, Predicted membrane protein Function unknown 26991816 Common - transcriptional regulator, MerR family PP_5140 138 COG0789 SoxR, Predicted transcriptional regulators Transcription 26990846 Nonpathogen - hypothetical protein PP_4153 1 None None None 26991367 Common mrcB penicillin-binding protein PP_4683 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 26991323 Common - CobW/P47K family protein PP_4639 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 26990134 Common - sensor histidine kinase PP_3421 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988023 Common algD GDP-mannose 6-dehydrogenase PP_1288 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 26989958 Nonpathogen - hypothetical protein PP_3240 1 None None None 26991232 Common - oxidoreductase, putative PP_4548 105 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26990929 Nonpathogen - hypothetical protein PP_4238 1 None None None 26991654 Common metF 5,10-methylenetetrahydrofolate reductase PP_4977 146 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 26986819 Common aroE shikimate 5-dehydrogenase PP_0074 223 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 26989411 Common - transporter, BCCT family, putative PP_2692 95 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 26988779 Common - transcriptional regulator, LysR family PP_2054 192 COG0583 LysR, Transcriptional regulator Transcription 26991139 Common - opine ABC transporter, ATP-binding protein, putative PP_4453 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 26990882 Common sdhB succinate dehydrogenase iron-sulfur subunit PP_4190 207 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 26986766 Common - hypothetical protein PP_0021 3 None None None 26987040 Common - transcriptional regulator, AraC family PP_0298 147 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26987869 Common - ISPpu9, transposase PP_1133 30 None None None 26992061 Common - heavy metal RND efflux outer membrane protein, CzcC family PP_5385 45 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26991509 Common - cobalamin biosynthesis protein CobG, putative PP_4829 73 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 26987885 Common - hypothetical protein PP_1149 1 None None None 26990793 Common uvrC excinuclease ABC subunit C PP_4098 223 COG0322 UvrC, Nuclease subunit of the excinuclease complex DNA replication, recombination, and repair 26991200 Common - transcriptional regulator, MarR family PP_4515 95 COG1846 MarR, Transcriptional regulators Transcription 26987173 Common argC N-acetyl-gamma-glutamyl-phosphate reductase PP_0432 213 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 26987438 Common - major facilitator family transporter PP_0702 55 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988744 Common - hypothetical protein PP_2019 46 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 26988132 Common - hypothetical protein PP_1398 84 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 26989934 Common - hypothetical protein PP_3216 23 COG5553 COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily General function prediction only 26987579 Common iscU scaffold protein PP_0843 149 COG0822 IscU, NifU homolog involved in Fe-S cluster formation Energy production and conversion 26989229 Common - hypothetical protein PP_2506 3 None None None 26989342 Common - hypothetical protein PP_2623 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 26987420 Common fklB-1 peptidyl-prolyl cis-trans isomerase, FKBP-type PP_0684 139 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 26987510 Common pta phosphate acetyltransferase PP_0774 162 COG0280 Pta, Phosphotransacetylase Energy production and conversion 26986761 Common - hypothetical protein PP_0016 9 None None None 26991859 Common - glutamine synthetase, putative PP_5183 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26988442 Common - MFS transporter, phthalate permease family PP_1710 201 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26987991 Common - ketoglutarate semialdehyde dehydrogenase PP_1256 192 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26986887 Common - ABC transporter, permease protein, putative PP_0142 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 26987461 Common - TPR domain protein PP_0725 119 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 26988338 Common dnaE DNA polymerase III subunit alpha PP_1606 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 26990472 Common - hypothetical protein PP_3767 1 None None None 26990085 Common - oxidoreductase, aldo/keto reductase family PP_3370 204 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 26990311 Common - D-glucarate permease PP_3600 206 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26991397 Common - hypothetical protein PP_4714 178 COG0779 COG0779, Uncharacterized protein conserved in bacteria Function unknown 26991275 Common rnd ribonuclease D PP_4591 121 COG0349 Rnd, Ribonuclease D Translation, ribosomal structure and biogenesis 26990600 Nonpathogen - regulatory protein Cro, putative PP_3895 1 COG4197 COG4197, Uncharacterized protein conserved in bacteria, prophage-related Function unknown 26988411 Common cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase PP_1679 118 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 26991978 Common spoT guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase PP_5302 208 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 26989772 Common gpW pyocin R2_PP, baseplate protein PP_3053 40 COG3628 COG3628, Phage baseplate assembly protein W General function prediction only 26986824 Common - transcriptional regulator, LysR family PP_0079 163 COG0583 LysR, Transcriptional regulator Transcription 26988772 Common - 3-hydroxyacyl-CoA dehydrogenase family protein PP_2047 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 26989391 Common - DNA-binding response regulator, LuxR family PP_2672 180 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26991786 Common ftsE cell division ABC transporter, ATP-binding protein FtsE PP_5110 249 COG2884 FtsE, Predicted ATPase involved in cell division Cell division and chromosome partitioning 26989218 Common - hypothetical protein PP_2495 22 COG5377 COG5377, Phage-related protein, predicted endonuclease DNA replication, recombination, and repair 26991007 Common - 2-hydroxyacid dehydrogenase PP_4316 197 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 26990166 Common - sensor protein RstB, putative PP_3453 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987307 Common - MATE efflux family protein PP_0569 77 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 26988830 Common - hypothetical protein PP_2105 11 COG4575 ElaB, Uncharacterized conserved protein Function unknown 26988996 Nonpathogen - hypothetical protein PP_2272 1 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 26991622 Common - carbamoyltransferase, NodU family PP_4944 52 COG2192 COG2192, Predicted carbamoyl transferase, NodU family Posttranslational modification, protein turnover, chaperones 26986931 Common hemD uroporphyrinogen-III synthase PP_0187 67 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 26988304 Common - hypothetical protein PP_1572 7 None None None 26988521 Common - acylneuraminate cytidylyltransferase, putative PP_1790 41 COG1083 NeuA, CMP-N-acetylneuraminic acid synthetase Cell envelope biogenesis, outer membrane 26988627 Common - DNA internalization-related competence protein ComEC/Rec2 PP_1897 119 COG2333 ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 161378122 Common - YciI-like protein PP_4502 75 COG2350 COG2350, Uncharacterized protein conserved in bacteria Function unknown 26989182 Common - ribose ABC transporter, periplasmic ribose-binding protein PP_2459 49 COG1869 RbsD, ABC-type ribose transport system, auxiliary component Carbohydrate transport and metabolism 26989899 Common - Smp-30/Cgr1 family protein PP_3180 69 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 26989081 Common - type 1 pili protein CsuB, putative PP_2357 9 COG5430 COG5430, Uncharacterized secreted protein Function unknown 26987425 Common rpmA 50S ribosomal protein L27 PP_0689 215 COG0211 RpmA, Ribosomal protein L27 Translation, ribosomal structure and biogenesis 26989782 Common gpU pyocin R2_PP, tail formation protein PP_3063 25 COG3499 COG3499, Phage protein U General function prediction only 26991632 Common - hypothetical protein PP_4954 51 COG1289 COG1289, Predicted membrane protein Function unknown 26989684 Common - Tn4652, tnpA repressor protein TnpC, putative PP_2965 4 None None None 26990482 Common - hypothetical protein PP_3777 55 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 26990735 Common - outer membrane lipoprotein Blc, putative PP_4032 74 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 26987272 Common - transcriptional regulator PfeR, putative PP_0534 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988456 Common - ABC transporter, permease protein PP_1724 156 COG4132 COG4132, ABC-type uncharacterized transport system, permease component General function prediction only 26990605 Common hicA-2 hicA protein PP_3900 8 None None None 26991256 Common - hypothetical protein PP_4572 8 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 161378135 Common secA preprotein translocase subunit SecA PP_1345 215 COG0653 SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) Intracellular trafficking and secretion 26988077 Common lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase PP_1343 139 COG0774 LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase Cell envelope biogenesis, outer membrane 26991048 Common fliL flagellar basal body-associated protein FliL PP_4359 21 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 26992073 Common - ISPpu14, transposase Orf1 PP_5398 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987963 Common - methyl-accepting chemotaxis transducer PP_1228 140 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26988962 Common - peptidase, M24 family protein PP_2238 182 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 26991515 Common - hypothetical protein PP_4835 1 None None None 26989280 Common - transport protein HasD, putative PP_2560 249 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 26989457 Common - transcriptional regulator, putative PP_2738 27 None None None 26988552 Common - hypothetical protein PP_1822 21 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 26989009 Nonpathogen - hypothetical protein PP_2285 1 None None None 26987981 Nonpathogen - hypothetical protein PP_1246 1 COG5373 COG5373, Predicted membrane protein Function unknown 26989867 Common - glutamine synthetase, putative PP_3148 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26990541 Nonpathogen - hypothetical protein PP_3836 1 None None None 26990830 Common - transcriptional regulator, LuxR family PP_4136 102 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 26990334 Common - cytochrome c family protein PP_3623 70 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26990518 Common ribBA-2 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein PP_3813 224 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 26989952 Common - heat shock protein, HSP20 family PP_3234 142 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 26990366 Common - cytosine/purine/uracil/thiamine/allantoin permease family protein PP_3655 32 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 26987572 Common secF preprotein translocase subunit SecF PP_0836 202 COG0341 SecF, Preprotein translocase subunit SecF Intracellular trafficking and secretion 26987778 Common xcpX type II secretion pathway protein XcpX PP_1042 6 COG3156 PulK, Type II secretory pathway, component PulK Intracellular trafficking and secretion 26988850 Common - DNA-binding response regulator, LuxR family PP_2126 211 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26989738 Common - carbon-nitrogen hydrolase family protein PP_3019 122 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26988871 Common - hypothetical protein PP_2147 2 None None None 26987316 Common - methyltransferase, putative PP_0578 78 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 26987320 Common - acetyl-CoA acetyltransferase PP_0582 170 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26986955 Common - hypothetical protein PP_0211 14 COG3536 COG3536, Uncharacterized protein conserved in bacteria Function unknown 26987419 Common - hypothetical protein PP_0683 1 None None None 26988236 Common - hypothetical protein PP_1504 6 None None None 26987719 Common - hypothetical protein PP_0983 113 COG0795 COG0795, Predicted permeases General function prediction only 26989289 Common - metabolite MFS transporter, MHS family PP_2569 132 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 26988880 Common lolE lipoprotein releasing system, permease protein PP_2156 162 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 26986873 Common - hypothetical protein PP_0128 34 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 26987771 Common cumB cumB protein PP_1035 208 COG0590 CumB, Cytosine/adenosine deaminases Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis 26987746 Common edd phosphogluconate dehydratase PP_1010 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 26988488 Common bolA bolA protein PP_1757 98 COG0271 BolA, Stress-induced morphogen (activity unknown) Signal transduction mechanisms 26987397 Common - transcriptional regulator AmpR, putative PP_0661 169 COG0583 LysR, Transcriptional regulator Transcription 26989126 Common ompR-2 DNA-binding response regulator OmpR PP_2403 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26989492 Nonpathogen - hypothetical protein PP_2773 1 None None None 26988724 Common - bacteriocin production protein PP_1999 87 COG1286 CvpA, Uncharacterized membrane protein, required for colicin V production General function prediction only 26987143 Common ksgA dimethyladenosine transferase PP_0401 248 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 26990933 Common - hypothetical protein PP_4242 9 None None None 26990955 Common hemN coproporphyrinogen III oxidase PP_4264 203 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 26988428 Common - hypothetical protein PP_1696 47 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989104 Common - hypothetical protein PP_2380 80 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 26991846 Common cysT sulfate ABC transporter, permease protein PP_5170 234 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 26992081 Nonpathogen - transposase, TnsA-related protein PP_5406 4 None None None 26986879 Common - hypothetical protein PP_0134 42 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 26989616 Nonpathogen - hypothetical protein PP_2897 1 None None None 26987599 Common - hypothetical protein PP_0863 93 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26991202 Common - hypothetical protein PP_4517 7 COG3318 COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA General function prediction only 26988613 Common - hypothetical protein PP_1883 1 None None None 26990745 Common - hypothetical protein PP_4044 1 None None None 26992053 Common - hypothetical protein PP_5377 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 26990593 Nonpathogen - hypothetical protein PP_3888 1 None None None 26991597 Common - MutT/nudix family protein PP_4919 67 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 26986912 Common - surface adhesion protein, putative PP_0168 181 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 26989034 Common - methyl-accepting chemotaxis transducer PP_2310 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989130 Common aroQ-2 3-dehydroquinate dehydratase PP_2407 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 26988388 Common relA GTP pyrophosphokinase PP_1656 205 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 26988114 Common pcaD 3-oxoadipate enol-lactone hydrolase PP_1380 169 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26991588 Common - hypothetical protein PP_4910 1 COG3726 AhpA, Uncharacterized membrane protein affecting hemolysin expression General function prediction only 26989213 Common - nitroreductase family protein PP_2490 56 COG0778 NfnB, Nitroreductase Energy production and conversion 26990626 Nonpathogen - hypothetical protein PP_3921 1 None None None 26986805 Common glyS glycyl-tRNA synthetase subunit beta PP_0060 167 COG0751 GlyS, Glycyl-tRNA synthetase, beta subunit Translation, ribosomal structure and biogenesis 26989064 Common - hypothetical protein PP_2340 17 COG3313 COG3313, Predicted Fe-S protein General function prediction only 26986848 Common - cytochrome c oxidase, subunit II PP_0103 154 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 26987895 Common - asparaginase family protein PP_1160 113 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 26989369 Common gbd 4-hydroxybutyrate dehydrogenase PP_2650 167 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 26987076 Common - ISPpu11, transposase PP_0334 63 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990816 Common nuoE NADH dehydrogenase subunit E PP_4122 157 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 26989271 Common - transcriptional regulator, LysR family PP_2551 157 COG0583 LysR, Transcriptional regulator Transcription 26990879 Common lpdG dihydrolipoamide dehydrogenase PP_4187 244 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 26989467 Common - branched-chain amino acid ABC transporter, ATP-binding protein, putative PP_2748 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26990653 Common - aldehyde dehydrogenase family protein, putative/cytochrome c family protein, putative PP_3948 120 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 26989884 Common benK benzoate MFS transporter BenK PP_3165 184 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26990990 Common glxR 2-hydroxy-3-oxopropionate reductase PP_4299 173 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 26988174 Common - methyltransferase, putative PP_1441 55 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26991115 Common - amino acid ABC transporter, permease protein PP_4427 170 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26989043 Common - hypothetical protein PP_2319 1 None None None 26987011 Common - glutamate synthase, large subunit, putative PP_0269 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 26991765 Common argS arginyl-tRNA synthetase PP_5089 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26987684 Common ptsO phosphotransferase system, NPr protein PP_0948 145 COG1925 FruB, Phosphotransferase system, HPr-related proteins Carbohydrate transport and metabolism 26988548 Common - hypothetical protein PP_1818 1 None None None 26988997 Common - DNA polymerase PP_2273 140 COG0749 PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains DNA replication, recombination, and repair 26988752 Common - hypothetical protein PP_2027 29 None None None 26989949 Common - hypothetical protein PP_3231 33 COG2312 COG2312, Erythromycin esterase homolog General function prediction only 26989331 Common - hypothetical protein PP_2612 4 None None None 26990152 Common - transcriptional regulator, AraC family PP_3439 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26989497 Common - 3-oxoacyl-(acyl-carrier-protein) synthase II PP_2778 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26987702 Common hisD histidinol dehydrogenase PP_0966 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 26987604 Common - glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative PP_0868 249 COG1125 OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components Amino acid transport and metabolism 26990959 Common - hypothetical protein PP_4268 179 COG0718 COG0718, Uncharacterized protein conserved in bacteria Function unknown 26987254 Common ribBA-1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein PP_0516 226 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 26989600 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_2881 146 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 26989763 Common - phage portal protein, lambda family PP_3044 38 COG5511 COG5511, Bacteriophage capsid protein General function prediction only 26988038 Common cysD sulfate adenylyltransferase subunit 2 PP_1303 139 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 26989563 Common ureB urease subunit beta PP_2844 96 COG0832 UreB, Urea amidohydrolase (urease) beta subunit Amino acid transport and metabolism 26987691 Common - hypothetical protein PP_0955 10 COG3117 COG3117, Uncharacterized protein conserved in bacteria Function unknown 26987756 Common - hypothetical protein PP_1020 52 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 26989436 Common arsB-2 arsenite efflux transporter PP_2717 107 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 26987531 Common fruA phosphotransferase system, fructose-specific IIBC component PP_0795 68 COG1299 FruA, Phosphotransferase system, fructose-specific IIC component Carbohydrate transport and metabolism 26989760 Common - hypothetical protein PP_3041 2 COG5373 COG5373, Predicted membrane protein Function unknown 26987943 Common - hypothetical protein PP_1208 29 COG2900 SlyX, Uncharacterized protein conserved in bacteria Function unknown 26987555 Common - hypothetical protein PP_0819 20 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 26989375 Common - phosphate ABC transporter, periplasmic phosphate-binding protein PP_2656 137 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 26987295 Common acoR acetoin catabolism regulatory protein PP_0557 172 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 26991483 Common dacA D-alanyl-D-alanine carboxypeptidase PP_4803 155 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 26986867 Common - hypothetical protein PP_0122 14 None None None 26990496 Common - site-specific recombinase, phage integrase family PP_3791 59 COG4973 XerC, Site-specific recombinase XerC DNA replication, recombination, and repair 26991164 Common aruD succinylglutamic semialdehyde dehydrogenase PP_4478 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987159 Common - lipase, GDSL family PP_0418 34 COG3240 COG3240, Phospholipase/lecithinase/hemolysin Lipid metabolism / General function prediction only 26991931 Common - hydrolase, isochorismatase family PP_5255 81 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26986821 Common - glycine betaine-binding protein, putative PP_0076 64 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 26990022 Common - multidrug resistance transporter, Bcr/CflA family PP_3304 215 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26986906 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_0162 55 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26987020 Common - hypothetical protein PP_0278 1 None None None 26990442 Common - ABC transporter, ATP-binding protein PP_3735 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 26991461 Common - sensor histidine kinase PP_4781 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989071 Common - DNA-binding response regulator PP_2347 206 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26986993 Common hslR heat shock protein 15 PP_0250 105 COG1188 COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) Translation, ribosomal structure and biogenesis 26990440 Common - ABC transporter lipoprotein, putative PP_3733 51 COG5621 COG5621, Predicted secreted hydrolase General function prediction only 26990720 Common - hypothetical protein PP_4015 41 COG2915 COG2915, Uncharacterized protein involved in purine metabolism General function prediction only 26990103 Common - hypothetical protein PP_3388 3 None None None 26987735 Common arcC carbamate kinase PP_0999 65 COG0549 ArcC, Carbamate kinase Amino acid transport and metabolism 26991431 Common - amino acid ABC transporter, permease protein PP_4750 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26988477 Common - carbon storage regulator, putative PP_1746 5 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 161378143 Common dxs 1-deoxy-D-xylulose-5-phosphate synthase PP_0527 226 COG1154 Dxs, Deoxyxylulose-5-phosphate synthase Coenzyme metabolism / Lipid metabolism 26989460 Common - hypothetical protein PP_2741 169 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26991873 Common ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase PP_5197 143 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 26987654 Common - 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative PP_0918 189 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26989137 Common - hypothetical protein PP_2414 1 None None None 26987977 Common - hypothetical protein PP_1242 1 None None None 26991405 Common greA transcription elongation factor GreA PP_4722 204 COG0782 GreA, Transcription elongation factor Transcription 26988199 Common - long-chain acyl-CoA thioester hydrolase family protein PP_1466 135 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 26990564 Common - hypothetical protein PP_3859 19 COG3778 COG3778, Uncharacterized protein conserved in bacteria Function unknown 26988808 Common - lipase, putative PP_2083 15 COG2267 PldB, Lysophospholipase Lipid metabolism 26988181 Common - hypothetical protein PP_1448 13 None None None 26988265 Common - excisionase, putative PP_1533 5 None None None 26989019 Common - antirestriction protein, putative PP_2295 12 COG4734 ArdA, Antirestriction protein General function prediction only 26989364 Common mgtB magnesium-translocating P-type ATPase PP_2645 231 COG0474 MgtA, Cation transport ATPase Inorganic ion transport and metabolism 26991702 Common mdoG glucan biosynthesis protein G PP_5026 50 COG3131 MdoG, Periplasmic glucans biosynthesis protein Inorganic ion transport and metabolism 26991946 Common dadA-2 D-amino acid dehydrogenase small subunit PP_5270 143 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26991306 Common - transcriptional regulator, IclR family PP_4622 113 COG1414 IclR, Transcriptional regulator Transcription 26989926 Common - cyclase, putative PP_3207 56 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 26991538 Common - hypothetical protein PP_4858 2 None None None 26988570 Common - hypothetical protein PP_1840 3 None None None 26986779 Common - glycosyl transferase, group 2 family protein PP_0034 182 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 26988655 Common - arsenical resistance protein ArsH, putative PP_1927 64 COG0431 COG0431, Predicted flavoprotein General function prediction only 26991170 Common - basic amino acid ABC transporter, permease protein PP_4484 173 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 26987765 Common - hypothetical protein PP_1029 18 COG0730 COG0730, Predicted permeases General function prediction only 26988008 Common - multidrug efflux MFS outer membrane protein, putative PP_1273 123 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26988211 Common - xenobiotic reductase, putative PP_1478 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26989745 Common - phage recombinase, putative PP_3026 24 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 26988635 Common rne ribonuclease E PP_1905 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 26990353 Nonpathogen - hypothetical protein PP_3642 1 None None None 26987029 Common - hypothetical protein PP_0287 43 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 26988394 Common - hypothetical protein PP_1662 1 None None None 26991685 Common - polyhydroxyalkanoate granule-associated protein GA1 PP_5008 19 None None None 26988797 Common - transcriptional regulator, AraC family PP_2072 77 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26987382 Common - hypothetical protein PP_0646 9 None None None 26990307 Common - D-amino acid dehydrogenase, small subunit family protein PP_3596 122 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26988010 Common - hypothetical protein PP_1275 1 None None None 26989517 Common - oxidoreductase, putative PP_2798 49 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 26989418 Common - hypothetical protein PP_2699 24 None None None 26990071 Common fcs feruloyl-CoA synthase PP_3356 196 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26991246 Common - hypothetical protein PP_4562 1 None None None 26987940 Common proS prolyl-tRNA synthetase PP_1205 247 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26991475 Common - lipoprotein, putative PP_4795 19 COG2980 RlpB, Rare lipoprotein B Cell envelope biogenesis, outer membrane 26990394 Nonpathogen - hypothetical protein PP_3685 1 None None None 26987636 Common - PAP2 family protein PP_0900 28 COG3907 COG3907, PAP2 (acid phosphatase) superfamily protein General function prediction only 26987215 Common secY preprotein translocase subunit SecY PP_0474 233 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 26990006 Common - universal stress protein family PP_3288 42 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26990582 Common - hypothetical protein PP_3877 20 COG4653 COG4653, Predicted phage phi-C31 gp36 major capsid-like protein General function prediction only 26991833 Common - hypothetical protein PP_5157 62 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26990086 Common - sensor histidine kinase PP_3371 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989427 Common - hypothetical protein PP_2708 15 None None None 26986960 Common - fatty acid desaturase family protein PP_0217 65 COG1398 OLE1, Fatty-acid desaturase Lipid metabolism 26988270 Common - hypothetical protein PP_1538 13 None None None 26991429 Common - amino acid ABC transporter, periplasmic amino acid-binding protein PP_4748 12 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26990308 Common - amino acid ABC transporter, ATP-binding protein PP_3597 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26991468 Common - hypothetical protein PP_4788 152 COG0319 COG0319, Predicted metal-dependent hydrolase General function prediction only 26989262 Common - transcriptional regulator, GntR family PP_2542 213 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26991147 Common - major facilitator family transporter PP_4461 121 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26991491 Common proA gamma-glutamyl phosphate reductase PP_4811 188 COG0014 ProA, Gamma-glutamyl phosphate reductase Amino acid transport and metabolism 161378134 Common rpsP 30S ribosomal protein S16 PP_1462 209 COG0228 RpsP, Ribosomal protein S16 Translation, ribosomal structure and biogenesis 26990030 Common - heat shock protein, putative PP_3312 152 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 26991458 Common - hypothetical protein PP_4777 4 None None None 26990459 Common - beta-ketothiolase PP_3754 178 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26989821 Common - hypothetical protein PP_3102 4 None None None 26988277 Nonpathogen - hypothetical protein PP_1545 1 None None None 26990867 Common fabB 3-oxoacyl-(acyl carrier protein) synthase I PP_4175 209 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26990622 Nonpathogen - hypothetical protein PP_3917 1 None None None 26990529 Common - hypothetical protein PP_3824 1 None None None 26989323 Common - major facilitator family transporter PP_2604 172 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26990870 Common - dienelactone hydrolase family protein PP_4178 88 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 26990350 Common - alkylhydroperoxidase AhpD domain protein PP_3639 65 COG2128 COG2128, Uncharacterized conserved protein Function unknown 26990486 Common - oxygen-independent Coproporphyrinogen III oxidase family protein PP_3781 204 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 26992026 Common - transcriptional regulator, RpiR family PP_5350 87 COG1737 RpiR, Transcriptional regulators Transcription 26990389 Common - hypothetical protein PP_3680 36 COG3593 COG3593, Predicted ATP-dependent endonuclease of the OLD family DNA replication, recombination, and repair 26991082 Common cheV-3 chemotaxis protein CheV PP_4393 182 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26988650 Common - hypothetical protein PP_1922 5 None None None 26989997 Common phaE phenylacetyl-CoA ligase PP_3279 122 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 26991074 Common flgG flagellar basal body rod protein FlgG PP_4385 126 COG4786 FlgG, Flagellar basal body rod protein Cell motility and secretion 26986850 Common - cytochrome C oxidase assembly protein PP_0105 68 COG3175 COX11, Cytochrome oxidase assembly factor Posttranslational modification, protein turnover, chaperones 26990450 Common glcC DNA-binding transcriptional dual regulator, glycolate-binding PP_3744 63 COG2186 FadR, Transcriptional regulators Transcription 26988898 Common - hypothetical protein PP_2174 67 COG3791 COG3791, Uncharacterized conserved protein Function unknown 26988379 Common - hypothetical protein PP_1647 20 COG3187 HslJ, Heat shock protein Posttranslational modification, protein turnover, chaperones 26989623 Common glnS glutaminyl-tRNA synthetase PP_2904 246 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 26988368 Common dgkA-1 diacylglycerol kinase PP_1636 97 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 26991280 Common - molybdopterin oxidoreductase, alpha subunit PP_4596 172 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 26990427 Common - periplasmic polyamine-binding protein, putative PP_3719 129 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26988681 Common - hypothetical protein PP_1954 112 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 26990261 Common emrA multidrug efflux MFS membrane fusion protein PP_3549 161 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26988416 Common - transporter, putative PP_1684 59 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990420 Common - hypothetical protein PP_3712 11 COG5628 COG5628, Predicted acetyltransferase General function prediction only 26990804 Common - hypothetical protein PP_4109 1 None None None 26986983 Common ssuB aliphatic sulfonates transport ATP-binding subunit PP_0240 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 26987226 Common ssb single-strand DNA-binding protein PP_0485 211 COG0629 Ssb, Single-stranded DNA-binding protein DNA replication, recombination, and repair 26989412 Common - dipeptidase, putative PP_2693 99 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 26989681 Common - alcohol dehydrogenase, zinc-containing PP_2962 170 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26991151 Common - porin, putative PP_4465 7 None None None 26989930 Common - ABC transporter, ATP-binding protein PP_3211 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 26989686 Nonpathogen - hypothetical protein PP_2967 1 COG1238 COG1238, Predicted membrane protein Function unknown 26991581 Common - ribosome-associated GTPase PP_4903 163 COG1162 COG1162, Predicted GTPases General function prediction only 26991029 Common cheZ chemotaxis protein CheZ PP_4339 45 COG3143 CheZ, Chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26987004 Common - hypothetical protein PP_0262 35 None None None 26991868 Common gcvP-2 glycine dehydrogenase PP_5192 172 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 26990531 Nonpathogen - hypothetical protein PP_3826 1 None None None 26986854 Common - hypothetical protein PP_0109 43 COG1612 CtaA, Uncharacterized protein required for cytochrome oxidase assembly Posttranslational modification, protein turnover, chaperones 26990430 Common alr alanine racemase PP_3722 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 26987416 Common - ATP-dependent protease, putative PP_0680 108 COG1067 LonB, Predicted ATP-dependent protease Posttranslational modification, protein turnover, chaperones 26991760 Common - penicillin-binding protein PP_5084 200 COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein Cell envelope biogenesis, outer membrane 26989835 Common lexA-2 LexA repressor PP_3116 172 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 26990062 Nonpathogen - hypothetical protein PP_3347 1 None None None 26990029 Common - glutathione-regulated potassium-proton antiporter PP_3311 209 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 26991785 Common ftsX cell division ABC efflux transporter, permease protein FtsX PP_5109 117 COG2177 FtsX, Cell division protein Cell division and chromosome partitioning 26988080 Common argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein PP_1346 167 COG1364 ArgJ, N-acetylglutamate synthase (N-acetylornithine aminotransferase) Amino acid transport and metabolism 26989535 Common - transcriptional regulator NfxB, putative PP_2816 7 None None None 26989463 Common - ribose-phosphate pyrophosphokinase family protein PP_2744 244 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 26991020 Common - toxin-related protein PP_4330 2 COG3774 OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane 26991990 Common rubB rubredoxin reductase PP_5314 227 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 26987857 Common - OmpA family protein PP_1121 163 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26988964 Common - ABC efflux transporter, permease/ATP-binding protein, putative PP_2240 249 COG4178 COG4178, ABC-type uncharacterized transport system, permease and ATPase components General function prediction only 26987786 Common xcpU type II secretion pathway protein XcpU PP_1050 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26991248 Common - lipoprotein, putative PP_4564 14 None None None 26989131 Common - cobalt-zinc-cadmium resistance protein CzcC, putative PP_2408 74 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26988890 Common - anti-anti-sigma factor PP_2166 7 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 26992060 Common copS sensor protein CopS PP_5384 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990590 Nonpathogen - hypothetical protein PP_3885 1 None None None 26989610 Common - acetyltransferase, GNAT family PP_2891 9 COG0456 RimI, Acetyltransferases General function prediction only 26988688 Nonpathogen - hypothetical protein PP_1961 1 COG1309 AcrR, Transcriptional regulator Transcription 26991010 Common - hypothetical protein PP_4319 1 None None None 26987322 Common - methyl-accepting chemotaxis transducer PP_0584 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989701 Common - Tn4652, cointegrate resolution protein T, putative PP_2982 11 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 26991630 Common dbpA ATP-dependent RNA helicase DbpA PP_4952 234 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 26989026 Common lon-2 ATP-dependent protease La PP_2302 212 COG0466 Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones 26988761 Common - dihydrodipicolinate synthase, putative PP_2036 234 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 26989059 Common - methylcitrate synthase PP_2335 194 COG0372 GltA, Citrate synthase Energy production and conversion 26989141 Common - iron ABC transporter, periplasmic iron-binding protein, putative PP_2418 78 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 26990228 Common - transcriptional regulator, AraC family PP_3516 59 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26987390 Common mdh malate dehydrogenase PP_0654 187 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 26987505 Common - sensor histidine kinase PP_0769 130 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990539 Common - hypothetical protein PP_3834 69 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 26988198 Common rplS 50S ribosomal protein L19 PP_1465 216 COG0335 RplS, Ribosomal protein L19 Translation, ribosomal structure and biogenesis 26989875 Common - universal stress protein family PP_3156 37 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26987533 Common - hypothetical protein PP_0797 20 None None None 26990559 Common - endolysin PP_3854 20 COG4678 COG4678, Muramidase (phage lambda lysozyme) Carbohydrate transport and metabolism 26991594 Common - hypothetical protein PP_4916 48 COG3150 COG3150, Predicted esterase General function prediction only 26989676 Common - acetyltransferase, GNAT family PP_2957 40 COG0456 RimI, Acetyltransferases General function prediction only 26987810 Common glpR glycerol-3-phosphate regulon repressor PP_1074 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 26990069 Common - acyl-CoA dehydrogenase, ferrulic acid biotransformation protein, putative PP_3354 145 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26989792 Common bdhA 3-hydroxybutyrate dehydrogenase PP_3073 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26990616 Common - hypothetical protein PP_3911 4 None None None 26988305 Common - major tail protein, putative PP_1573 5 None None None 26989004 Nonpathogen - hypothetical protein PP_2280 1 None None None 26990165 Common - GGDEF domain protein PP_3452 178 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26991569 Common hflC HflC protein PP_4891 179 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 26988731 Common - hypothetical protein PP_2006 3 None None None 26991529 Common - dnaK protein, putative PP_4849 231 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 26988436 Nonpathogen - hypothetical protein PP_1704 1 None None None 26991180 Common - transcriptional regulator, LysR family PP_4494 180 COG0583 LysR, Transcriptional regulator Transcription 26991100 Nonpathogen - hypothetical protein PP_4412 1 None None None 26987582 Common hscA chaperone protein HscA PP_0846 234 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 26987447 Common - hydrolase, isochorismatase family PP_0711 81 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26991640 Common - hypothetical protein PP_4962 1 None None None 26987197 Common rplW 50S ribosomal protein L23 PP_0456 216 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 26989389 Nonpathogen - hypothetical protein PP_2670 1 None None None 26989055 Common - hypothetical protein PP_2331 19 None None None 26991775 Common - hypothetical protein PP_5099 13 None None None 26988668 Common - hypothetical protein PP_1941 27 COG1309 AcrR, Transcriptional regulator Transcription 26988149 Common - tricarboxylate transport protein TctA, putative PP_1416 75 COG3333 COG3333, Uncharacterized protein conserved in bacteria Function unknown 26987291 Common acoC branched-chain alpha-keto acid dehydrogenase subunit E2 PP_0553 192 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26987085 Common waaG lipopolysaccharide core biosynthesis protein WaaG PP_0343 107 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26989889 Common - transcriptional regulator, LysR family PP_3170 137 COG0583 LysR, Transcriptional regulator Transcription 26991131 Common - transposase, IS3 family PP_4445 134 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987498 Common hprA glycerate dehydrogenase PP_0762 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 26987705 Common - transcriptional regulator, GntR family PP_0969 140 COG2186 FadR, Transcriptional regulators Transcription 26991337 Common - transporter, putative PP_4653 134 COG2252 COG2252, Permeases General function prediction only 26988784 Common - hypothetical protein PP_2059 6 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 26987317 Common - hypothetical protein PP_0579 39 COG1694 MazG, Predicted pyrophosphatase General function prediction only 26989112 Common - transporter, LysE family PP_2388 22 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26986861 Common - lipoprotein, putative PP_0116 1 None None None 26987096 Common - CBS domain protein PP_0354 103 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 26989489 Common - hypothetical protein PP_2770 30 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26987611 Common - hypothetical protein PP_0875 102 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26989729 Common - hypothetical protein PP_3010 1 None None None 26989990 Common actP acetate permease PP_3272 172 COG4147 DhlC, Predicted symporter General function prediction only 26990947 Common ccoO-2 cytochrome c oxidase, cbb3-type, subunit II PP_4256 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 26989638 Common - transcriptional regulator, LysR family PP_2919 190 COG0583 LysR, Transcriptional regulator Transcription 26989287 Common - hydrolase, alpha/beta fold family PP_2567 86 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26990198 Common - cytochrome c, putative PP_3486 52 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26987559 Common selD selenophosphate synthetase PP_0823 121 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 26987018 Common - transcriptional regulator, Cro/CI family PP_0276 22 COG5606 COG5606, Uncharacterized conserved small protein Function unknown 26988437 Common nirB nitrite reductase PP_1705 190 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 26990407 Common - hypothetical protein PP_3699 12 COG2849 COG2849, Uncharacterized protein conserved in bacteria Function unknown 26987183 Common nusG transcription antitermination protein NusG PP_0442 215 COG0250 NusG, Transcription antiterminator Transcription 26987618 Common dppA dipeptide ABC transporter, periplasmic dipeptide-binding protein PP_0882 209 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26990663 Common - sodium-proton antiporter, NhaA family PP_3958 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 26991107 Common - transposase, OrfA PP_4419 59 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988835 Common aer-2 aerotaxis receptor Aer-2 PP_2111 159 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26987762 Common - peptidase, M23/M37 family PP_1026 192 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 26990667 Common - lipoprotein, putative PP_3962 8 None None None 26991867 Common - hypothetical protein PP_5191 3 None None None 26987155 Common - polyamine ABC transporter, permease protein PP_0414 176 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 26990157 Common - glyoxalase family protein PP_3444 60 COG2764 PhnB, Uncharacterized protein conserved in bacteria Function unknown 26990380 Common - transcriptional regulator, LysR family PP_3669 98 COG0583 LysR, Transcriptional regulator Transcription 26990395 Nonpathogen - hypothetical protein PP_3686 1 None None None 26989951 Common - transcriptional regulator, Crp/Fnr family PP_3233 125 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 26988068 Common mraY phospho-N-acetylmuramoyl-pentapeptide-transferase PP_1334 223 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 26987959 Common - hypothetical protein PP_1224 98 COG1729 COG1729, Uncharacterized protein conserved in bacteria Function unknown 26991616 Common - glycosyl transferase, putative PP_4938 205 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26987822 Common pyrC dihydroorotase PP_1086 86 COG0418 PyrC, Dihydroorotase Nucleotide transport and metabolism 26989041 Common - ABC transporter, ATP-binding protein, putative PP_2317 249 COG4181 COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 26989903 Common - hypothetical protein PP_3184 46 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 26987219 Common rpsD 30S ribosomal protein S4 PP_0478 221 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 26989974 Common - glycosyl transferase, group 2 family protein PP_3256 19 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 26989649 Common - L-serine dehydratase, putative PP_2930 178 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 26987049 Common - hypothetical protein PP_0307 12 COG3755 COG3755, Uncharacterized protein conserved in bacteria Function unknown 26991451 Common - hypothetical protein PP_4770 5 COG3416 COG3416, Uncharacterized protein conserved in bacteria Function unknown 26991746 Common - ParA family protein PP_5070 195 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26988229 Common - transcriptional regulator, TetR family PP_1497 7 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 26990492 Common - hypothetical protein PP_3787 4 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 26989967 Common - oxidoreductase, putative PP_3249 114 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 26988595 Common - ISPpu8, transposase PP_1865 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 26990123 Common cobM precorrin-4 C11-methyltransferase PP_3410 202 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 26988747 Nonpathogen - hypothetical protein PP_2022 1 None None None 26988546 Common - alcohol dehydrogenase, zinc-containing PP_1816 118 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 26987440 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_0704 93 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26986969 Common - cysteine ABC transporter, permease protein, putative PP_0226 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26987346 Common - hypothetical protein PP_0609 1 COG4966 PilW, Tfp pilus assembly protein PilW Cell motility and secretion / Intracellular trafficking and secretion 26986945 Common - hypothetical protein PP_0201 31 COG2606 EbsC, Uncharacterized conserved protein Function unknown 26986835 Common - hypothetical protein PP_0090 3 None None None 26987573 Common - hypothetical protein PP_0837 17 COG3134 COG3134, Predicted outer membrane lipoprotein Function unknown 26986813 Common def peptide deformylase PP_0068 214 COG0242 Def, N-formylmethionyl-tRNA deformylase Translation, ribosomal structure and biogenesis 26990335 Common - hypothetical protein PP_3624 40 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26991739 Common betB betaine aldehyde dehydrogenase PP_5063 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987795 Common - amino acid permease PP_1059 181 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26988605 Common - sensor histidine kinase/response regulator PP_1875 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987395 Common metB cystathionine gamma-synthase PP_0659 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 26990234 Common - hypothetical protein PP_3522 47 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26991921 Common - transcriptional regulator, AraC family PP_5245 158 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26988580 Common - hypothetical protein PP_1850 64 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989785 Common - pyocin R2_PP, lytic enzyme PP_3066 35 COG3179 COG3179, Predicted chitinase General function prediction only 26987258 Common pgpA phosphatidylglycerophosphatase A PP_0520 105 COG1267 PgpA, Phosphatidylglycerophosphatase A and related proteins Lipid metabolism 26988793 Common - multidrug efflux MFS membrane fusion protein, putative PP_2068 114 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26988807 Common ppsA phosphoenolpyruvate synthase PP_2082 235 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 26990162 Common - hypothetical protein PP_3449 1 None None None 26991481 Common lipB lipoyltransferase PP_4801 169 COG0321 LipB, Lipoate-protein ligase B Coenzyme metabolism 26991500 Common - TIM-barrel protein, putative, NifR3 family PP_4820 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 26988886 Common - phosphonoacetaldehyde phosphonohydrolase-related protein PP_2162 10 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 26989365 Common - hypothetical protein PP_2646 4 None None None 26990500 Common - hypothetical protein PP_3795 1 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26990628 Common - phosphoglycerate mutase family protein PP_3923 25 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 26990857 Common - hypothetical protein PP_4165 27 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26991497 Common - MaoC domain protein PP_4817 71 COG2030 MaoC, Acyl dehydratase Lipid metabolism 26991823 Common - hydrolase, haloacid dehalogenase-like family PP_5147 87 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 26987172 Common - conserved hypothetical protein TIGR00701 PP_0431 97 COG1981 COG1981, Predicted membrane protein Function unknown 26987386 Common - hypothetical protein PP_0650 9 None None None 26990413 Common - hypothetical protein PP_3705 2 None None None 26991723 Common ntrB sensory box histidine kinase NtrB PP_5047 219 COG3852 NtrB, Signal transduction histidine kinase, nitrogen specific Signal transduction mechanisms 26991750 Common hemE uroporphyrinogen decarboxylase PP_5074 182 COG0407 HemE, Uroporphyrinogen-III decarboxylase Coenzyme metabolism 26989072 Common - sensor histidine kinase PP_2348 201 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989518 Common - aminotransferase PP_2799 236 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26990054 Common - hypothetical protein PP_3339 1 None None None 26990733 Common - enoyl-CoA hydratase PP_4030 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 161378116 Common - potassium/proton antiporter PP_5066 152 COG3263 COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain Inorganic ion transport and metabolism 26991507 Common cobI precorrin-2 C(20)-methyltransferase PP_4827 122 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 26987353 Common - branched-chain amino acid ABC transporter, ATP binding protein PP_0616 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26990850 Common kdpE transcriptional regulatory protein KdpE PP_4157 206 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26990142 Common - response regulator/sensor histidine kinase PP_3429 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988587 Common - hypothetical protein PP_1857 23 COG4394 COG4394, Uncharacterized protein conserved in bacteria Function unknown 26989092 Common dkgB 2,5-diketo-D-gluconate reductase B PP_2368 176 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 26990552 Common - transcriptional regulator, LuxR family PP_3847 85 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26987309 Common - hypothetical protein PP_0571 2 None None None 26988343 Common kdsA-1 2-dehydro-3-deoxyphosphooctonate aldolase PP_1611 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 26989658 Common - hypothetical protein PP_2939 52 COG4115 COG4115, Uncharacterized protein conserved in bacteria Function unknown 26991674 Common pyrR pyrimidine regulatory protein PyrR PP_4997 109 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 26987243 Common oprG outer membrane protein OprG PP_0504 70 COG3047 OmpW, Outer membrane protein W Cell envelope biogenesis, outer membrane 26989487 Common - branched-chain amino acid ABC transporter, permease protein, putative PP_2768 145 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 26988514 Common rmlA glucose-1-phosphate thymidylyltransferase PP_1783 233 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 26988001 Common - fusaric acid resistance protein, putative PP_1266 115 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26990509 Common - hypothetical protein PP_3804 12 COG0803 LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 26991627 Common - TldD/PmbA family protein PP_4949 166 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 26987274 Nonpathogen - hypothetical protein PP_0536 2 None None None 26987271 Common pfeS sensor protein PfeS PP_0533 210 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989800 Common - conserved hypothetical protein TIGR00481 PP_3081 115 COG1881 COG1881, Phospholipid-binding protein General function prediction only 26991193 Common - transcriptional regulator, AraC family PP_4508 83 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991839 Common - acetyltransferase, CysE/LacA/LpxA/NodL family PP_5163 217 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 26991098 Nonpathogen - hypothetical protein PP_4410 3 None None None 26989768 Common - hypothetical protein PP_3049 7 None None None 26987570 Common yajC preprotein translocase subunit YajC PP_0834 174 COG1862 YajC, Preprotein translocase subunit YajC Intracellular trafficking and secretion 26987122 Common pqqA coenzyme PQQ synthesis protein PqqA PP_0380 1 None None None 26989151 Common - sugar efflux transporter PP_2428 103 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990263 Common - DNA-binding response regulator, LuxR family PP_3551 214 COG4566 TtrR, Response regulator Signal transduction mechanisms 26989660 Common - hypothetical protein PP_2941 95 COG2135 COG2135, Uncharacterized conserved protein Function unknown 26987526 Common - inner membrane protein AmpE PP_0790 23 COG3725 AmpE, Membrane protein required for beta-lactamase induction Defense mechanisms 26989564 Common ureC urease subunit alpha PP_2845 96 COG0804 UreC, Urea amidohydrolase (urease) alpha subunit Amino acid transport and metabolism 26991138 Common - NAD/NADP octopine/nopaline dehydrogenase family protein PP_4452 26 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 26988722 Common folC folylpolyglutamate synthetase PP_1997 216 COG0285 FolC, Folylpolyglutamate synthase Coenzyme metabolism 26987585 Common ndk nucleoside diphosphate kinase PP_0849 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 26991543 Common - branched-chain amino acid ABC transporter, ATP-binding protein PP_4863 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26991570 Common hflK HflK protein PP_4892 216 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 26991896 Common elbB isoprenoid biosynthesis protein with amidotransferase-like domain PP_5220 41 COG3155 ElbB, Uncharacterized protein involved in an early stage of isoprenoid biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 26990172 Common - hypothetical protein PP_3459 5 COG3391 COG3391, Uncharacterized conserved protein Function unknown 26991448 Common - hypothetical protein PP_4767 33 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26986866 Common thrB homoserine kinase PP_0121 61 COG2334 COG2334, Putative homoserine kinase type II (protein kinase fold) General function prediction only 26987236 Common - sodium/alanine symporter PP_0496 114 COG1115 AlsT, Na+/alanine symporter Amino acid transport and metabolism 26988693 Common - deoxyribonuclease, TatD family PP_1967 238 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 26987739 Common - arginine/ornithine antiporter PP_1003 90 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26988714 Common leuB 3-isopropylmalate dehydrogenase PP_1988 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 26989527 Common - oxidoreductase, putative PP_2808 125 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26991711 Common hutC histidine utilization repressor PP_5035 125 COG2188 PhnF, Transcriptional regulators Transcription 26987476 Common - transcriptional regulator, MerR family PP_0740 60 COG0789 SoxR, Predicted transcriptional regulators Transcription 26988571 Common - cytochrome c family protein PP_1841 12 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26989089 Common - transcriptional regulator, AraC family PP_2365 94 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26987333 Common - transcriptional regulator, LysR family PP_0595 107 COG0583 LysR, Transcriptional regulator Transcription 26988881 Common - sensor histidine kinase PP_2157 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26989065 Common - 6-pyruvoyl tetrahydrobiopterin synthase, putative PP_2341 125 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 26988142 Common phaG acyl-transferase PP_1408 7 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26988707 Common - NifR3/Smm1 family protein PP_1981 208 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 26989710 Common - hypothetical protein PP_2991 5 None None None 26990374 Common - GGDEF domain protein PP_3663 177 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26987727 Common - hypothetical protein PP_0991 27 None None None 26989198 Common - transcriptional regulator, TetR family PP_2475 90 COG1309 AcrR, Transcriptional regulator Transcription 26991124 Common - ISPpu14, transposase Orf1 PP_4437 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987436 Common - transmembrane sensor, putative PP_0700 45 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26991064 Common fliS flagellar protein FliS PP_4375 67 COG1516 FliS, Flagellin-specific chaperone FliS Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 26991316 Common - short chain dehydrogenase PP_4632 161 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991714 Common - hypothetical protein PP_5038 7 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 26986919 Common - transcriptional regulator, MarR family PP_0175 52 COG1846 MarR, Transcriptional regulators Transcription 26987653 Common - chromosome replication initiation inhibitor protein PP_0917 104 COG0583 LysR, Transcriptional regulator Transcription 26991847 Common cysP sulfate ABC transporter, periplasmic sulfate-binding protein PP_5171 89 COG1613 Sbp, ABC-type sulfate transport system, periplasmic component Inorganic ion transport and metabolism 26988285 Common - hypothetical protein PP_1553 8 None None None 26987944 Common - cold-shock domain family protein PP_1209 177 COG1278 CspC, Cold shock proteins Transcription 26990348 Common - sulfonate ABC transporter, ATP-binding protein, putative PP_3637 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 26989983 Common - hypothetical protein PP_3265 69 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 26987644 Common - hypothetical protein PP_0908 24 COG3490 COG3490, Uncharacterized protein conserved in bacteria Function unknown 26989667 Common - transcriptional regulator, GntR family PP_2948 217 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26989965 Common - transporter, bile acid/Na+ symporter family PP_3247 84 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 26990252 Common mvaB hydroxymethylglutaryl-CoA lyase PP_3540 96 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 26991520 Common cycA D-alanine/D-serine/glycine permease PP_4840 181 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26987378 Common - hypothetical protein PP_0642 72 COG1284 COG1284, Uncharacterized conserved protein Function unknown 26989079 Common - response regulator PP_2355 86 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26989777 Common - hypothetical protein PP_3058 3 None None None 26991935 Common - transcriptional regulator, LysR family PP_5259 125 COG0583 LysR, Transcriptional regulator Transcription 26988812 Common cmpX cmpX protein PP_2087 8 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26990243 Common - hypothetical protein PP_3531 15 None None None 26989642 Common - hypothetical protein PP_2923 34 None None None 26991353 Common - OmpA family protein PP_4669 158 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26991803 Common - hypothetical protein PP_5127 129 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 26987720 Common - hypothetical protein PP_0984 36 COG1714 COG1714, Predicted membrane protein/domain Function unknown 26987210 Common rplF 50S ribosomal protein L6 PP_0469 239 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 26989045 Nonpathogen - hypothetical protein PP_2321 1 None None None 26990259 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_3547 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26987808 Common - leucine-rich repeat domain protein PP_1072 10 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 26988356 Common - group II intron-encoding maturase PP_1624 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26991951 Common - transcriptional regulator, GntR family PP_5275 230 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26991112 Common - transcriptional regulator, AsnC family PP_4424 151 COG1522 Lrp, Transcriptional regulators Transcription 26988578 Nonpathogen - hypothetical protein PP_1848 1 None None None 26989572 Common - hypothetical protein PP_2853 19 None None None 26987605 Common - glycine betaine/carnitine/choline ABC transporter, permease protein, putative PP_0869 164 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 26988012 Common algA mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase PP_1277 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 26990517 Common - lipase, putative PP_3812 137 COG0657 Aes, Esterase/lipase Lipid metabolism 26990717 Common - isocitrate dehydrogenase, NADP-dependent, monomeric-type PP_4012 65 COG2838 Icd, Monomeric isocitrate dehydrogenase Energy production and conversion 26988445 Common pcaQ transcriptional regulator PcaQ PP_1713 182 COG0583 LysR, Transcriptional regulator Transcription 26989225 Common - transcriptional regulator, LysR family PP_2502 159 COG0583 LysR, Transcriptional regulator Transcription 26989698 Common - hypothetical protein PP_2979 44 COG3339 COG3339, Uncharacterized conserved protein Function unknown 26989587 Common - transcriptional regulator, Cro/CI family PP_2868 117 COG1396 HipB, Predicted transcriptional regulators Transcription 26988024 Common - hypothetical protein PP_1289 86 COG3022 COG3022, Uncharacterized protein conserved in bacteria Function unknown 26991056 Common fliH flagellar assembly protein H PP_4367 66 COG1317 FliH, Flagellar biosynthesis/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 26988828 Common - hypothetical protein PP_2103 1 None None None 26988315 Common - structural protein P5, putative PP_1583 16 None None None 26988821 Common - hypothetical protein PP_2096 162 COG0116 COG0116, Predicted N6-adenine-specific DNA methylase DNA replication, recombination, and repair 26991077 Common flgE flagellar hook protein FlgE PP_4388 127 COG1749 FlgE, Flagellar hook protein FlgE Cell motility and secretion 26986836 Common - lipoprotein, putative PP_0091 1 None None None 26987111 Common - GGDEF domain protein PP_0369 173 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26987285 Common mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase PP_0547 208 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 26990236 Common - hypothetical protein PP_3524 1 None None None 26990502 Common - hypothetical protein PP_3797 56 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 26990965 Common ligA NAD-dependent DNA ligase LigA PP_4274 219 COG0272 Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair 26990630 Common - hypothetical protein PP_3925 60 COG3173 COG3173, Predicted aminoglycoside phosphotransferase General function prediction only 26988123 Common - carboxyphosphonoenolpyruvate phosphonomutase, putative PP_1389 112 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 26987950 Common ruvC Holliday junction resolvase PP_1215 195 COG0817 RuvC, Holliday junction resolvasome, endonuclease subunit DNA replication, recombination, and repair 26989121 Common - hypothetical protein PP_2398 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 26988842 Common - hypothetical protein PP_2118 1 None None None 26987930 Nonpathogen - hypothetical protein PP_1195 7 COG3351 FlaD, Putative archaeal flagellar protein D/E Cell motility and secretion 26990979 Common - ureidoglycolate hydrolase PP_4288 35 COG3194 DAL3, Ureidoglycolate hydrolase Nucleotide transport and metabolism 26988670 Common purU formyltetrahydrofolate deformylase PP_1943 219 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 26988904 Common - putative aminotransferase PP_2180 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26990187 Common - hypothetical protein PP_3475 11 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26986928 Common argH argininosuccinate lyase PP_0184 233 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 26987165 Common crp cAMP-regulatory protein PP_0424 150 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 26990037 Common - sensory box protein/GGDEF domain protein PP_3319 187 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26991278 Common - cystathionine gamma-synthase, putative PP_4594 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 26987630 Common - hypothetical protein PP_0894 17 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 26991184 Common - Sua5/YciO/YrdC/YwlC family protein PP_4499 234 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 26987939 Common - lipoprotein, putative PP_1204 1 None None None 26989306 Common - transcriptional regulator, LuxR family PP_2587 36 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26989596 Common - transporter, bile acid/Na+ symporter family PP_2877 60 COG0385 COG0385, Predicted Na+-dependent transporter General function prediction only 26992018 Common - transcriptional regulator, GntR family PP_5342 205 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26987770 Common cumA multicopper oxidase PP_1034 129 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 26987147 Common - nucleotidyltransferase family protein PP_0406 225 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 26986820 Common - sulfate transporter PP_0075 157 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 26987118 Common pqqE pyrroloquinoline quinone biosynthesis protein PqqE PP_0376 164 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 26990436 Common - periplasmic amino acid-binding protein-related protein PP_3729 15 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26991999 Common - peptidase, M23/M37 family PP_5323 184 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 26989878 Common benR benABC operon transcriptional activator BenR PP_3159 88 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26988249 Common - RND efflux transporter PP_1517 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26987133 Common - hypothetical protein PP_0391 159 COG0344 COG0344, Predicted membrane protein Function unknown 26987054 Common - electron transfer flavoprotein, alpha subunit PP_0312 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 26991519 Common - hypothetical protein PP_4839 73 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 26989099 Common metH B12-dependent methionine synthase PP_2375 179 COG1410 MetH, Methionine synthase I, cobalamin-binding domain Amino acid transport and metabolism 26987129 Common rpoD RNA polymerase sigma factor RpoD PP_0387 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 26992011 Common purK phosphoribosylaminoimidazole carboxylase ATPase subunit PP_5335 194 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 26991606 Common kdtA 3-deoxy-D-manno-octulosonic-acid transferase PP_4928 128 COG1519 KdtA, 3-deoxy-D-manno-octulosonic-acid transferase Cell envelope biogenesis, outer membrane 26988958 Common - transcriptional regulator, AraC family PP_2234 114 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26990969 Common xdhA xanthine dehydrogenase, XdhA subunit PP_4278 122 COG4630 XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A Nucleotide transport and metabolism 26989060 Common - aconitate hydratase PP_2336 223 COG1048 AcnA, Aconitase A Energy production and conversion 26988729 Common - transcriptional regulator, AraC family PP_2004 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26990689 Common - ISPpu13, transposase Orf3 PP_3984 9 None None None 26991404 Common - hypothetical protein PP_4721 1 None None None 26989344 Common - hypothetical protein PP_2625 11 None None None 26987540 Common - protein secretion ABC efflux system, permease and ATP-binding protein PP_0804 248 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 26991761 Common maeB malic enzyme PP_5085 202 COG0281 SfcA, Malic enzyme Energy production and conversion 26990326 Common - hypothetical protein PP_3615 1 None None None 26990494 Common - efflux transporter, putative PP_3789 40 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26986898 Common - hypothetical protein PP_0153 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 26987736 Common argI ornithine carbamoyltransferase PP_1000 239 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 26990576 Common - hypothetical protein PP_3871 6 None None None 26989916 Common - glyoxalase family protein PP_3197 24 None None None 26991489 Common - hypothetical protein PP_4809 201 COG0799 COG0799, Uncharacterized homolog of plant Iojap protein Function unknown 26987695 Common ttg2B toluene tolerance ABC efflux transporter, permease PP_0959 151 COG0767 Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component Secondary metabolites biosynthesis, transport, and catabolism 26988539 Nonpathogen - hypothetical protein PP_1809 1 None None None 26987171 Common - hypothetical protein PP_0430 92 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 26988263 Common - hypothetical protein PP_1531 104 COG1393 ArsC, Arsenate reductase and related proteins, glutaredoxin family Inorganic ion transport and metabolism 161378145 Common rpmC 50S ribosomal protein L29 PP_0462 140 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 26991741 Common - hypothetical protein PP_5065 1 None None None 26989696 Common - Tn4652, transposase subunit B PP_2977 145 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987715 Common holC DNA polymerase III subunit chi PP_0979 62 COG2927 HolC, DNA polymerase III, chi subunit DNA replication, recombination, and repair 26987979 Common - hypothetical protein PP_1244 1 None None None 26988217 Common - polyamine ABC transporter, ATP-binding protein PP_1484 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26988716 Common - ISPpu8, transposase PP_1990 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 26991894 Common - DedA family protein PP_5218 76 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 26986910 Common - HlyD family secretion protein PP_0166 129 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26991096 Common - gamma-aminobutyrate transporter, putative PP_4407 164 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26991127 Common - ISPpu14, transposase Orf1 PP_4441 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990726 Common est esterase PP_4021 83 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26991875 Common ubiH 2-octaprenyl-6-methoxyphenyl hydroxylase PP_5199 119 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 26990728 Common - ISPpu15, transposase Orf1 PP_4024 49 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26991032 Common fleN flagellar number regulator FleN PP_4342 154 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26990181 Common - hypothetical protein PP_3468 1 None None None 26988171 Common czrR-2 DNA-binding response regulator CzrR PP_1438 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26989551 Common - transcriptional regulator, LysR family PP_2832 166 COG0583 LysR, Transcriptional regulator Transcription 26989416 Common - flavin reductase domain protein PP_2697 94 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 26991401 Common ftsH cell division protein FtsH PP_4718 249 COG0465 HflB, ATP-dependent Zn proteases Posttranslational modification, protein turnover, chaperones 26989108 Common - hypothetical protein PP_2384 8 COG4392 COG4392, Predicted membrane protein Function unknown 26991828 Common - hypothetical protein PP_5152 9 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 26987652 Common - transporter, LysE family PP_0916 79 COG1279 COG1279, Lysine efflux permease General function prediction only 26992007 Common - long-chain acyl-CoA thioester hydrolase family protein PP_5331 132 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 26987415 Common - hypothetical protein PP_0679 15 None None None 26990168 Common - multidrug efflux RND membrane fusion protein PP_3455 148 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26990876 Common braZ branched-chain amino acid transport system III carrier protein PP_4184 52 COG1114 BrnQ, Branched-chain amino acid permeases Amino acid transport and metabolism 26986970 Common - cystine transporter subunit PP_0227 189 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26990852 Common kdpC potassium-transporting ATPase subunit C PP_4159 95 COG2156 KdpC, K+-transporting ATPase, c chain Inorganic ion transport and metabolism 26992031 Common - sodium/proton antiporter, putative PP_5355 208 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 26988472 Common - glycine betaine-binding protein, putative PP_1741 69 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 26989919 Common - hypothetical protein PP_3200 18 None None None 26991407 Common carA carbamoyl phosphate synthase small subunit PP_4724 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 26989786 Common - hypothetical protein PP_3067 10 None None None 26987068 Common soxG sarcosine oxidase, gamma subunit PP_0326 29 COG4583 COG4583, Sarcosine oxidase gamma subunit Amino acid transport and metabolism 26987962 Common - hypothetical protein PP_1227 41 COG3965 COG3965, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 26988164 Common lepA GTP-binding protein LepA PP_1431 249 COG0481 LepA, Membrane GTPase LepA Cell envelope biogenesis, outer membrane 26991756 Common pilQ type IV pili biogenesis protein PilQ PP_5080 140 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 26987061 Common - hypothetical protein PP_0319 4 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 26987388 Common - gluconate transporter PP_0652 76 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 26987883 Common - hypothetical protein PP_1147 1 None None None 26987558 Common - tRNA 2-selenouridine synthase PP_0822 65 COG2603 COG2603, Predicted ATPase General function prediction only 26987368 Common pilD type IV pili prepilin peptidase PilD/XcpA PP_0632 135 COG1989 PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26991683 Common - transcriptional regulator, TetR family PP_5006 55 COG1309 AcrR, Transcriptional regulator Transcription 26986777 Nonpathogen - hypothetical protein PP_0032 1 None None None 26990073 Common ech p-hydroxycinnamoyl CoA hydratase/lyase PP_3358 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26986925 Common - hypothetical protein PP_0181 8 None None None 26987908 Common - porin, putative PP_1173 7 None None None 26988443 Common - transcriptional regulator, AraC family PP_1711 115 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26988770 Common - metallo-beta-lactamase family protein PP_2045 44 COG2015 COG2015, Alkyl sulfatase and related hydrolases Secondary metabolites biosynthesis, transport, and catabolism 26988392 Nonpathogen - hypothetical protein PP_1660 5 None None None 26989438 Nonpathogen - hypothetical protein PP_2719 1 None None None 26987156 Common rpe ribulose-phosphate 3-epimerase PP_0415 216 COG0036 Rpe, Pentose-5-phosphate-3-epimerase Carbohydrate transport and metabolism 26989061 Common - hypothetical protein PP_2337 55 COG2828 COG2828, Uncharacterized protein conserved in bacteria Function unknown 26988994 Common - DNA primase/helicase PP_2270 14 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 26987228 Common - hypothetical protein PP_0487 98 COG0730 COG0730, Predicted permeases General function prediction only 26988535 Common wbpM polysaccharide biosynthesis protein PP_1805 147 COG1086 COG1086, Predicted nucleoside-diphosphate sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26988049 Common - oxidoreductase, aldo/keto reductase family PP_1314 192 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 26990443 Common vanA vanillate demethylase A PP_3736 75 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 26987178 Common birA biotin--protein ligase PP_0437 222 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 26987916 Common - DNA-binding response regulator PP_1181 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26990880 Common kgdB dihydrolipoamide acetyltransferase PP_4188 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 26988856 Common - universal stress protein family PP_2132 99 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26988645 Common fabF 3-oxoacyl-(acyl carrier protein) synthase II PP_1916 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26987494 Common - hypothetical protein PP_0758 101 COG2135 COG2135, Uncharacterized conserved protein Function unknown 26988329 Common dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase PP_1597 184 COG0743 Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lipid metabolism 26986953 Common - nitrate ABC transporter, ATP-binding protein, putative PP_0209 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 26991514 Common - SPFH domain/Band 7 family protein PP_4834 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 26986885 Common - hypothetical protein PP_0140 92 COG1463 Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component Secondary metabolites biosynthesis, transport, and catabolism 26992055 Common copB copper resistance protein B PP_5379 43 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 26989886 Common benE-2 benzoate transport protein PP_3167 59 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 26987079 Common - sensory box protein PP_0337 184 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26990953 Common ccoS cytochrome oxidase maturation protein, cbb3-type PP_4262 33 COG3197 FixS, Uncharacterized protein, possibly involved in nitrogen fixation Inorganic ion transport and metabolism 26990295 Common - RND efflux transporter, permease protein PP_3583 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26988095 Common groEL chaperonin GroEL PP_1361 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 26989274 Common - 4-hydroxyphenylpyruvate dioxygenase, putative PP_2554 83 COG3185 COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins Amino acid transport and metabolism / General function prediction only 26988517 Common - glycosyl transferase, putative PP_1786 87 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26991346 Common - hypothetical protein PP_4662 50 COG1359 COG1359, Uncharacterized conserved protein Function unknown 26989238 Common - hypothetical protein PP_2515 23 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 26989908 Common codA cytosine deaminase PP_3189 71 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 26988675 Common - benzaldehyde dehydrogenase PP_1948 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26990412 Nonpathogen - hypothetical protein PP_3704 1 None None None 26989730 Nonpathogen - hypothetical protein PP_3011 1 None None None 26991876 Common pepP aminopeptidase P II PP_5200 238 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 26991664 Common - chemotaxis protein, putative PP_4987 8 None None None 26990091 Common kguD 2-ketogluconate 6-phosphate reductase PP_3376 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 26988230 Common - lipoprotein, putative PP_1498 1 None None None 26988798 Common - acetyltransferase, GNAT family PP_2073 56 COG0456 RimI, Acetyltransferases General function prediction only 26988791 Common - transcriptional regulator, GntR family PP_2066 107 COG2188 PhnF, Transcriptional regulators Transcription 26990449 Common - hypothetical protein PP_3743 3 None None None 26987107 Common bioC biotin biosynthesis protein BioC PP_0365 173 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26988475 Nonpathogen - hypothetical protein PP_1744 1 None None None 26990188 Common - secretion protein, putative PP_3476 76 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26989309 Common - outer membrane ferric siderophore receptor PP_2590 89 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26987706 Common - cyanate MFS transporter PP_0970 77 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 26991555 Common - hypothetical protein PP_4875 9 None None None 26988112 Common pcaT dicarboxylate MFS transporter PP_1378 131 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988868 Common - transcriptional regulator, TetR family PP_2144 91 COG1309 AcrR, Transcriptional regulator Transcription 26990365 Common - transcriptional regulator, AsnC family PP_3654 150 COG1522 Lrp, Transcriptional regulators Transcription 26989016 Common - hypothetical protein PP_2292 3 None None None 26989921 Common - transporter, putative PP_3202 57 COG1033 COG1033, Predicted exporters of the RND superfamily General function prediction only 26991166 Common aruF arginine N-succinyltransferase, alpha subunit PP_4480 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 26989494 Common - glycine betaine/L-proline ABC transporter, periplasmic binding protein, putative PP_2775 57 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 26990698 Common dsrE hypothetical protein PP_3993 44 COG1553 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction Inorganic ion transport and metabolism 26991903 Common lysA-2 diaminopimelate decarboxylase PP_5227 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 26988557 Common - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase PP_1827 224 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 26990316 Common - transcriptional regulator, LysR family PP_3605 122 COG0583 LysR, Transcriptional regulator Transcription 26989223 Common - hypothetical protein PP_2500 19 COG3668 ParE, Plasmid stabilization system protein General function prediction only 26991553 Common dnaB replicative DNA helicase PP_4873 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 26987499 Common - acyl-CoA synthetase PP_0763 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26988573 Common - magnesium/cobalt transporter, MIT family PP_1843 162 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 26987446 Common - hypothetical protein PP_0710 3 COG4319 COG4319, Ketosteroid isomerase homolog Function unknown 26991694 Common tatC-2 Sec-independent periplasmic protein translocator TatC PP_5018 204 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 26988736 Common - hypothetical protein PP_2011 19 COG3782 COG3782, Uncharacterized protein conserved in bacteria Function unknown 26990118 Common - hypothetical protein PP_3404 35 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26989985 Common - clp protease, putative PP_3267 4 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26988224 Common - CheW domain protein PP_1491 9 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26989070 Common - hypothetical protein PP_2346 3 COG3212 COG3212, Predicted membrane protein Function unknown 26988027 Common moaC molybdenum cofactor biosynthesis protein C PP_1292 195 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 26989023 Common tig trigger factor PP_2299 216 COG0544 Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) Posttranslational modification, protein turnover, chaperones 26988610 Common - outer membrane autotransporter PP_1880 42 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26989602 Common - hypothetical protein PP_2883 1 None None None 26991705 Common hutG formiminoglutamase PP_5029 57 COG3741 HutG, N-formylglutamate amidohydrolase Amino acid transport and metabolism 26986804 Common - D,D-heptose 1,7-bisphosphate phosphatase PP_0059 128 COG0241 HisB, Histidinol phosphatase and related phosphatases Amino acid transport and metabolism 26991309 Common - LrgB family protein PP_4625 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 26989892 Common nemA N-ethylmaleimide reductase, FMN-linked PP_3173 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26991937 Common - transcriptional regulator, LysR family PP_5261 168 COG0583 LysR, Transcriptional regulator Transcription 26989377 Common - phosphate ABC transporter, permease protein PP_2658 223 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 26987154 Common - polyamine ABC transporter, permease protein PP_0413 150 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 26989477 Common - ribose ABC transporter, periplasmic ribose-binding protein, putative PP_2758 52 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 26988330 Common - membrane-associated zinc metalloprotease, putative PP_1598 209 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 26988805 Common - hypothetical protein PP_2080 77 COG2902 COG2902, NAD-specific glutamate dehydrogenase Amino acid transport and metabolism 26986871 Common - cytochrome c4 PP_0126 61 COG2863 COG2863, Cytochrome c553 Energy production and conversion 26988104 Common - glycosyl transferase, group 1 family protein PP_1370 195 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26987311 Common - hypothetical protein PP_0573 39 COG2831 FhaC, Hemolysin activation/secretion protein Intracellular trafficking and secretion 26988425 Nonpathogen - hypothetical protein PP_1693 1 None None None 26986958 Common - response regulator PP_0215 144 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 26991963 Nonpathogen - hypothetical protein PP_5287 1 None None None 26987301 Common - response regulator PP_0563 215 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26988326 Common frr ribosome recycling factor PP_1594 216 COG0233 Frr, Ribosome recycling factor Translation, ribosomal structure and biogenesis 26992075 Common - hypothetical protein PP_5400 6 None None None 26991385 Common pgi glucose-6-phosphate isomerase PP_4701 195 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 26991973 Common - amino acid transporter, putative PP_5297 53 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26988467 Common - hypothetical protein PP_1736 83 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 26987592 Common - hypothetical protein PP_0856 115 COG1520 COG1520, FOG: WD40-like repeat Function unknown 26989873 Common - hypothetical protein PP_3154 12 None None None 26988076 Common ftsZ cell division protein FtsZ PP_1342 232 COG0206 FtsZ, Cell division GTPase Cell division and chromosome partitioning 26991689 Common - hypothetical protein PP_5012 46 COG3165 COG3165, Uncharacterized protein conserved in bacteria Function unknown 26987007 Common - dTDP-4-dehydrorhamnose 3,5-epimerase family protein PP_0265 168 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 26988105 Common - methyl-accepting chemotaxis transducer PP_1371 146 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989953 Common - hypothetical protein PP_3235 24 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 26988201 Common xerD site-specific tyrosine recombinase XerD PP_1468 232 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 26990887 Common - hypothetical protein PP_4195 36 None None None 26991956 Nonpathogen - hypothetical protein PP_5280 1 None None None 26990691 Common - ISPpu13, transposase Orf1 PP_3986 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989176 Common ansA L-asparaginase II PP_2453 133 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 26987252 Common ribD riboflavin biosynthesis protein RibD PP_0514 220 COG0117 RibD, Pyrimidine deaminase Coenzyme metabolism 26989401 Common - alcohol dehydrogenase, iron-containing PP_2682 173 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 26987489 Common - lipoprotein, putative PP_0753 3 COG3056 COG3056, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 26989570 Common - hypothetical protein PP_2851 29 COG4312 COG4312, Uncharacterized protein conserved in bacteria Function unknown 26989755 Nonpathogen - hypothetical protein PP_3036 1 None None None 26990475 Common - hypothetical protein PP_3770 1 None None None 26989167 Common - transcriptional regulator, LysR family PP_2444 163 COG0583 LysR, Transcriptional regulator Transcription 26989795 Common - ABC transporter, permease protein, putative PP_3076 220 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 26987987 Common - group II intron-encoding maturase PP_1252 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26988969 Common - transcriptional regulator, Cro/CI family PP_2245 62 COG1396 HipB, Predicted transcriptional regulators Transcription 26990779 Common - hypothetical protein PP_4079 14 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 26989248 Common metY O-acetylhomoserine aminocarboxypropyltransferase PP_2528 206 COG2873 MET17, O-acetylhomoserine sulfhydrylase Amino acid transport and metabolism 26990200 Common - Sco1/SenC family protein PP_3488 53 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 26987427 Common proB gamma-glutamyl kinase PP_0691 190 COG0263 ProB, Glutamate 5-kinase Amino acid transport and metabolism 26988719 Common - hypothetical protein PP_1993 39 COG3170 FimV, Tfp pilus assembly protein FimV Cell motility and secretion / Intracellular trafficking and secretion 26991177 Common phhB pterin-4-alpha-carbinolamine dehydratase PP_4491 85 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 26986764 Nonpathogen - hypothetical protein PP_0019 1 COG2944 COG2944, Predicted transcriptional regulator Transcription 26989119 Common - hypothetical protein PP_2396 3 None None None 26989201 Common - isoquinoline 1-oxidoreductase, beta subunit, putative PP_2478 112 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 26990792 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PP_4097 200 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 26988501 Common - prephenate dehydrogenase, putative/3-phosphoshikimate 1-carboxyvinyltransferase PP_1770 229 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 26991250 Common - hypothetical protein PP_4566 68 COG2962 RarD, Predicted permeases General function prediction only 26991326 Common - hypothetical protein PP_4642 12 None None None 26987293 Common acoA acetoin dehydrogenase, alpha subunit PP_0555 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 26988087 Common - hypothetical protein PP_1353 198 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26991462 Common thiD phosphomethylpyrimidine kinase PP_4782 218 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 26989093 Common - leucine-rich repeat domain protein PP_2369 19 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 26989636 Nonpathogen - hypothetical protein PP_2917 1 None None None 26988786 Nonpathogen - hypothetical protein PP_2061 1 None None None 26989843 Common - transporter, short-chain fatty acid transporter family PP_3124 39 COG2031 AtoE, Short chain fatty acids transporter Lipid metabolism 26987679 Common fagA fagA protein PP_0943 2 None None None 26991005 Common - hypothetical protein PP_4314 55 COG3791 COG3791, Uncharacterized conserved protein Function unknown 26989381 Common - hypothetical protein PP_2662 14 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 26987863 Common estC carboxylesterase PP_1127 98 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 26988417 Common - hypothetical protein PP_1685 1 None None None 26991983 Common exbD biopolymer transport protein ExbD PP_5307 133 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 26987329 Common add adenosine deaminase PP_0591 100 COG1816 Add, Adenosine deaminase Nucleotide transport and metabolism 26988441 Common - fumarylacetoacetate hydrolase family protein PP_1709 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 26990589 Common - phage holin, lambda family PP_3884 5 None None None 26988506 Common - metallo-beta-lactamase family protein PP_1775 128 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 26990991 Common - hydroxypyruvate reductase, putative PP_4300 86 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 26987181 Common tuf elongation factor Tu PP_0440 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 26987843 Nonpathogen - hypothetical protein PP_1107 1 None None None 26990822 Common nouK NADH dehydrogenase subunit K PP_4128 165 COG0713 NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) Energy production and conversion 26990402 Common - hypothetical protein PP_3694 11 None None None 26990291 Common - hypothetical protein PP_3579 38 COG4291 COG4291, Predicted membrane protein Function unknown 26992088 Common atpD F0F1 ATP synthase subunit beta PP_5413 247 COG0055 AtpD, F0F1-type ATP synthase, beta subunit Energy production and conversion 26986948 Common - transcriptional regulator, GntR family PP_0204 134 COG2188 PhnF, Transcriptional regulators Transcription 26992038 Common - hypothetical protein PP_5362 3 None None None 26989421 Common - porin, putative PP_2702 11 COG3203 OmpC, Outer membrane protein (porin) Cell envelope biogenesis, outer membrane 26987777 Common tatA-1 Sec-independent protein translocase TatA PP_1041 23 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 26991095 Common - hypothetical protein PP_4406 3 None None None 26989856 Common - glycosyl transferase, group 2 family protein PP_3137 24 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 26989501 Common - pyridoxalphosphate dependent aminotransferase, class III PP_2782 235 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 26991567 Common purA adenylosuccinate synthetase PP_4889 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 26991650 Common - hypothetical protein PP_4972 21 COG3686 COG3686, Predicted membrane protein Function unknown 26986979 Common ssuE NAD(P)H-dependent FMN reductase PP_0236 56 COG0431 COG0431, Predicted flavoprotein General function prediction only 26991861 Common argA N-acetylglutamate synthase PP_5185 202 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 26986757 Common recF recombination protein F PP_0012 166 COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) DNA replication, recombination, and repair 26988493 Common - hypothetical protein PP_1762 6 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 26988917 Common - outer membrane ferric siderophore receptor PP_2193 61 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26987095 Common - exonuclease PP_0353 118 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 26991308 Common - hydrolase, alpha/beta fold family PP_4624 78 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26989801 Common - hypothetical protein PP_3082 76 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 161378120 Common carB carbamoyl phosphate synthase large subunit PP_4723 236 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 26991253 Nonpathogen - hypothetical protein PP_4569 1 None None None 26991466 Common - hypothetical protein PP_4786 15 COG4517 COG4517, Uncharacterized protein conserved in bacteria Function unknown 26989180 Common rbsR ribose operon repressor PP_2457 129 COG1609 PurR, Transcriptional regulators Transcription 26990633 Common - hypothetical protein PP_3928 9 COG5455 COG5455, Predicted integral membrane protein Function unknown 26990784 Common - RHS family protein, putative PP_4085 67 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 26987831 Common - hypothetical protein PP_1095 73 COG4658 RnfD, Predicted NADH:ubiquinone oxidoreductase, subunit RnfD Energy production and conversion 26988973 Common - methyl-accepting chemotaxis transducer PP_2249 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989164 Common - hypothetical protein PP_2441 2 None None None 26990917 Common - DNA-binding response regulator PP_4225 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26987038 Common - glycine betaine/L-proline ABC transporter, periplasmic binding protein PP_0296 59 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 26987828 Common nth endonuclease III PP_1092 238 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 26987456 Common pth peptidyl-tRNA hydrolase PP_0720 216 COG0193 Pth, Peptidyl-tRNA hydrolase Translation, ribosomal structure and biogenesis 26987876 Common braD branched-chain amino acid ABC transporter, permease protein PP_1140 150 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 26990488 Common - hypothetical protein PP_3783 9 COG3259 FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit Energy production and conversion 26991340 Common pcaH protocatechuate 3,4-dioxygenase, beta subunit PP_4656 52 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 26987624 Common - response regulator PP_0888 184 COG4567 COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Signal transduction mechanisms / Transcription 26991438 Common - glucarate dehydratase PP_4757 58 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 26987561 Common - phosphate ABC transporter, ATP-binding protein, putative PP_0825 249 COG3638 COG3638, ABC-type phosphate/phosphonate transport system, ATPase component Inorganic ion transport and metabolism 26991362 Common ilvC ketol-acid reductoisomerase PP_4678 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 26988374 Common - hypothetical protein PP_1642 87 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 26990221 Common - glyoxalase family protein PP_3509 23 None None None 26988460 Common - hypothetical protein PP_1728 120 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26989088 Common - hypothetical protein PP_2364 30 COG2866 COG2866, Predicted carboxypeptidase Amino acid transport and metabolism 26989356 Common - endo-1,4-D-glucanase PP_2637 30 COG3405 CelA, Endoglucanase Y Carbohydrate transport and metabolism 26992045 Common - hypothetical protein PP_5369 16 COG4766 EutQ, Ethanolamine utilization protein Amino acid transport and metabolism 26989101 Common - acetyltransferase Act, putative PP_2377 81 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 26988561 Common - hypothetical protein PP_1831 75 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988970 Common - hypothetical protein PP_2246 53 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26991179 Common - oxidoreductase, putative PP_4493 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 26988873 Common gap-2 glyceraldehyde-3-phosphate dehydrogenase PP_2149 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 26988541 Common wecB UDP-N-acetylglucosamine 2-epimerase PP_1811 158 COG0381 WecB, UDP-N-acetylglucosamine 2-epimerase Cell envelope biogenesis, outer membrane 26990897 Common - hypothetical protein PP_4205 12 None None None 26990211 Common - ISPpu14, transposase Orf1 PP_3499 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990648 Common - hydrolase, alpha/beta fold family PP_3943 14 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26991053 Common - anti-sigma F factor antagonist, putative PP_4364 13 COG1366 SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) Signal transduction mechanisms 26992028 Common uvrD DNA-dependent helicase II PP_5352 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 26989447 Common - hypothetical protein PP_2728 13 None None None 26990762 Common - hypothetical protein PP_4061 1 COG5373 COG5373, Predicted membrane protein Function unknown 26989584 Common - transcriptional regulator, LysR family PP_2865 120 COG0583 LysR, Transcriptional regulator Transcription 26991643 Common tktA transketolase PP_4965 222 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 161378114 Common - hypothetical protein PP_5295 137 COG1561 COG1561, Uncharacterized stress-induced protein Function unknown 26987613 Nonpathogen - hypothetical protein PP_0877 1 None None None 26991784 Common rpoH RNA polymerase factor sigma-32 PP_5108 216 COG0568 RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) Transcription 26991372 Common - heme/hemin ABC transporter, permease protein PP_4688 185 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 26988186 Common - MutT/nudix family protein PP_1453 129 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 26990907 Common - hypothetical protein PP_4215 98 COG1262 COG1262, Uncharacterized conserved protein Function unknown 26990465 Common - chemotaxis protein methyltransferase, CheR-like PP_3760 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 26991026 Common motC flagellar motor protein PP_4336 123 COG1291 MotA, Flagellar motor component Cell motility and secretion 26989395 Common - periplasmic binding protein, putative PP_2676 16 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26991204 Common tolC agglutination protein PP_4519 130 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26991813 Common - ABC transporter, ATP-binding protein PP_5137 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26991238 Common - hypothetical protein PP_4554 54 COG3832 COG3832, Uncharacterized conserved protein Function unknown 26988823 Common dacB D-alanyl-D-alanine carboxypeptidase PP_2098 99 COG2027 DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) Cell envelope biogenesis, outer membrane 26987318 Common - MaoC domain protein PP_0580 30 COG2030 MaoC, Acyl dehydratase Lipid metabolism 26987482 Common upp uracil phosphoribosyltransferase PP_0746 166 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 26986781 Common - transcriptional regulator, putative PP_0036 24 COG0583 LysR, Transcriptional regulator Transcription 26987837 Common - hypothetical protein PP_1101 1 COG5373 COG5373, Predicted membrane protein Function unknown 26986995 Common hslO Hsp33-like chaperonin PP_0252 127 COG1281 COG1281, Disulfide bond chaperones of the HSP33 family Posttranslational modification, protein turnover, chaperones 26991390 Common - hypothetical protein PP_4706 31 COG1359 COG1359, Uncharacterized conserved protein Function unknown 26989753 Common - regulator protein, putative PP_3034 4 None None None 26987031 Common hisB imidazoleglycerol-phosphate dehydratase PP_0289 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 26988945 Nonpathogen - hypothetical protein PP_2221 1 None None None 26987543 Common - anaerobic nitric oxide reductase transcription regulator PP_0807 170 COG3604 FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains Transcription / Signal transduction mechanisms 26989605 Common - cytochrome b561, putative PP_2886 50 COG3038 CybB, Cytochrome B561 Energy production and conversion 26991009 Common - ISPpu8, transposase PP_4318 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 26988927 Common - hypothetical protein PP_2203 64 COG3019 COG3019, Predicted metal-binding protein General function prediction only 26989254 Common - transcriptional regulator, LysR family PP_2534 109 COG0583 LysR, Transcriptional regulator Transcription 26991915 Common - magnesium chelatase, subunit D/I family PP_5239 187 COG0606 COG0606, Predicted ATPase with chaperone activity Posttranslational modification, protein turnover, chaperones 26987403 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_0667 102 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988009 Common - short chain dehydrogenase PP_1274 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26991150 Common - transcriptional regulator, LysR family PP_4464 177 COG0583 LysR, Transcriptional regulator Transcription 26991821 Common ptsP phosphoenolpyruvate-protein phosphotransferase PtsP PP_5145 235 COG3605 PtsP, Signal transduction protein containing GAF and PtsI domains Signal transduction mechanisms 26988777 Common - hydrolase, haloacid dehalogenase-like family PP_2052 179 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 26987990 Common - D-amino acid dehydrogenase, small subunit family protein PP_1255 105 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26989325 Common - hypothetical protein PP_2606 17 None None None 26987238 Common - hypothetical protein PP_0498 3 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26989589 Common - extracellular solute-binding protein, PotD/PotF family PP_2870 61 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26989812 Common - hypothetical protein PP_3093 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 26989946 Common - periplasmic aliphatic sulfonate-binding protein, putative PP_3228 73 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26988754 Common - von Willebrand factor type A domain protein PP_2029 80 COG1240 ChlD, Mg-chelatase subunit ChlD Coenzyme metabolism 26989846 Common - exopolysaccharide transport protein, putative PP_3127 62 COG3206 GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis Cell envelope biogenesis, outer membrane 26990985 Common - hypothetical protein PP_4294 61 COG2354 COG2354, Uncharacterized protein conserved in bacteria Function unknown 26991910 Common - nitrogen regulatory protein P-II PP_5234 187 COG0347 GlnK, Nitrogen regulatory protein PII Amino acid transport and metabolism 26986784 Nonpathogen - hypothetical protein PP_0039 1 None None None 26988055 Common sspA stringent starvation protein A PP_1320 104 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26988297 Common - phage portal protein, HK97 family PP_1565 69 COG4695 COG4695, Phage-related protein Function unknown 26990981 Common - xanthine/uracil permease family protein PP_4290 127 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 26991298 Common - hypothetical protein PP_4614 1 None None None 26990084 Common - transcriptional regulator, LysR family PP_3369 108 COG0583 LysR, Transcriptional regulator Transcription 26990843 Common - peptide ABC transporter, ATP-binding protein PP_4150 249 COG4172 COG4172, ABC-type uncharacterized transport system, duplicated ATPase component General function prediction only 26990421 Common catA catechol 1,2-dioxygenase PP_3713 50 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 26990174 Common - hypothetical protein PP_3461 106 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 26990533 Common modA molybdate ABC transporter, periplasmic molybdate-binding protein PP_3828 134 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 26987806 Common - amino acid ABC transporter, permease protein PP_1070 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26989057 Common - transcriptional regulator, GntR family PP_2333 141 COG1802 GntR, Transcriptional regulators Transcription 26987047 Common - transcriptional regulator, AraC family PP_0305 134 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26987664 Common - K+-dependent Na+/Ca+ exchanger related-protein PP_0928 105 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 26991522 Common - branched-chain amino acid ABC transporter, permease protein, putative PP_4842 90 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 26990597 Nonpathogen - hypothetical protein PP_3892 1 None None None 26991339 Common pcaG protocatechuate 3,4-dioxygenase, alpha subunit PP_4655 38 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 26992091 Common atpH F0F1 ATP synthase subunit delta PP_5416 185 COG0712 AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) Energy production and conversion 26987580 Common iscA iron-binding protein IscA PP_0844 164 COG0316 IscA, Uncharacterized conserved protein Function unknown 26987190 Common rpsL 30S ribosomal protein S12 PP_0449 237 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 26988434 Common rdgC recombination associated protein PP_1702 53 COG2974 RdgC, DNA recombination-dependent growth factor C DNA replication, recombination, and repair 26989543 Common - transcriptional regulator, TetR family PP_2824 93 COG1309 AcrR, Transcriptional regulator Transcription 26988738 Common - hypothetical protein PP_2013 61 None None None 26991427 Common - ISPpu15, transposase Orf2 PP_4745 66 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988603 Common - methionine sulfoxide reductase B PP_1873 194 COG0229 COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 26990138 Common mexE multidrug efflux RND membrane fusion protein MexE PP_3425 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26987151 Common uhpA DNA-binding response regulator UhpA PP_0410 192 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26989221 Common - hypothetical protein PP_2498 23 None None None 26987503 Common - transcriptional regulator, LuxR family PP_0767 108 COG2909 MalT, ATP-dependent transcriptional regulator Transcription 26990834 Common dnaQ DNA polymerase III subunit epsilon PP_4141 185 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 26988463 Common minE cell division topological specificity factor MinE PP_1732 87 COG0851 MinE, Septum formation topological specificity factor Cell division and chromosome partitioning 26986815 Common - Sua5/YciO/YrdC/YwlC family protein PP_0070 237 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 26991737 Common - choline/carnitine/betaine transporter family protein PP_5061 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 26991850 Common - efflux membrane fusion protein, RND family PP_5174 158 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26990515 Common - hypothetical protein PP_3810 7 None None None 26991022 Common cheW purine-binding chemotaxis protein CheW PP_4332 140 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26989499 Common - 3-oxoacyl-(acyl-carrier-protein) synthase II PP_2780 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26986889 Common - metalloprotease, insulinase family PP_0144 157 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 26988154 Common - sensor histidine kinase TctE, putative PP_1421 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988763 Common - long-chain-fatty-acid--CoA ligase, putative PP_2038 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26991133 Common - hypothetical protein PP_4447 4 None None None 26988138 Common - hypothetical protein PP_1404 26 COG3762 COG3762, Predicted membrane protein Function unknown 26991381 Common pcnB poly(A) polymerase PP_4697 213 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 26988615 Common - hypothetical protein PP_1885 1 None None None 26989653 Common - hypothetical protein PP_2934 49 COG4188 COG4188, Predicted dienelactone hydrolase General function prediction only 26989053 Common pabB para-aminobenzoate synthase component I PP_2329 222 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 26988733 Common fadH 2,4-dienoyl-CoA reductase FadH PP_2008 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26989095 Common cysI sulphite reductase hemoprotein, beta subunit PP_2371 150 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 26987016 Common - helix-turn-helix domain protein PP_0274 10 COG5499 COG5499, Predicted transcription regulator containing HTH domain Transcription 26988238 Common adk adenylate kinase PP_1506 229 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 26988568 Common - hypothetical protein PP_1838 58 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 26990669 Common - ISPpu14, transposase Orf3 PP_3964 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990432 Common - acyl-CoA dehydrogenase, putative PP_3725 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987139 Common - hypothetical protein PP_0397 69 COG2766 PrkA, Putative Ser protein kinase Signal transduction mechanisms 26990140 Common oprN multidrug efflux RND outer membrane protein OprN PP_3427 121 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26990226 Common hyuB hydantoin utilization protein B PP_3514 93 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26989454 Common - hypothetical protein PP_2735 61 COG3496 COG3496, Uncharacterized conserved protein Function unknown 26987853 Common - hypothetical protein PP_1117 1 None None None 26990665 Common - transcriptional regulator, TetR family PP_3960 131 COG1309 AcrR, Transcriptional regulator Transcription 26991548 Common pncB nicotinate phosphoribosyltransferase PP_4868 64 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 26989110 Common - hypothetical protein PP_2386 1 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26989052 Common cysH phosphoadenosine phosphosulfate reductase PP_2328 154 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 26990337 Common - hypothetical protein PP_3626 1 COG3313 COG3313, Predicted Fe-S protein General function prediction only 26989708 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_2989 234 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26987768 Common guaA bifunctional GMP synthase/glutamine amidotransferase protein PP_1032 239 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 26991031 Common fliA flagellar biosynthesis sigma factor PP_4341 214 COG1191 FliA, DNA-directed RNA polymerase specialized sigma subunit Transcription 26987617 Common dppB dipeptide ABC transporter, permease protein PP_0881 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26986882 Common gltP glutamate/aspartate:proton symporter PP_0137 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 26989688 Common - hypothetical protein PP_2969 82 COG1937 COG1937, Uncharacterized protein conserved in bacteria Function unknown 26990159 Common ilvA-1 threonine dehydratase PP_3446 214 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 26991379 Common - sensory box histidine kinase PP_4695 222 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 26990008 Common - universal stress protein family PP_3290 17 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26987712 Common - putative SAM-dependent methyltransferase PP_0976 29 COG3129 COG3129, Predicted SAM-dependent methyltransferase General function prediction only 26991441 Common - alcohol dehydrogenase, zinc-containing PP_4760 188 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26989727 Common - hypothetical protein PP_3008 4 None None None 26987269 Common - hypothetical protein PP_0531 4 None None None 26991317 Common - hypothetical protein PP_4633 38 COG3492 COG3492, Uncharacterized protein conserved in bacteria Function unknown 26987464 Common - hypothetical protein PP_0728 10 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 26988302 Common - head-tail adaptor PP_1570 5 COG5614 COG5614, Bacteriophage head-tail adaptor General function prediction only 26991236 Common phaJ1 enoyl-CoA hydratase, R-specific PP_4552 98 COG2030 MaoC, Acyl dehydratase Lipid metabolism 26987824 Common argG argininosuccinate synthase PP_1088 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 26987026 Common - gamma-aminobutyrate transporter, putative PP_0284 150 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26988290 Nonpathogen - antitermination protein Q, putative PP_1558 2 None None None 26987957 Common tolB translocation protein TolB PP_1222 157 COG0823 TolB, Periplasmic component of the Tol biopolymer transport system Intracellular trafficking and secretion 26990598 Common - phage DNA helicase, putative PP_3893 216 COG0305 DnaB, Replicative DNA helicase DNA replication, recombination, and repair 26988066 Common murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase PP_1332 213 COG0769 MurE, UDP-N-acetylmuramyl tripeptide synthase Cell envelope biogenesis, outer membrane 26989864 Common - hypothetical protein PP_3145 17 None None None 26989028 Common - peptidyl-prolyl cis-trans isomerase D, putative PP_2304 172 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 26987199 Common rpsS 30S ribosomal protein S19 PP_0458 245 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 26987348 Common pilE type IV pili biogenesis protein PilE PP_0611 41 COG4968 PilE, Tfp pilus assembly protein PilE Cell motility and secretion / Intracellular trafficking and secretion 26986833 Common - hypothetical protein PP_0088 110 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26987098 Common glcB malate synthase G PP_0356 70 COG2225 AceB, Malate synthase Energy production and conversion 26986926 Common - hypothetical protein PP_0182 4 None None None 26991748 Common - major facilitator family transporter PP_5072 170 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988414 Common - glycosyl hydrolase, family 5 PP_1682 10 None None None 26988279 Nonpathogen - hypothetical protein PP_1547 1 None None None 26987091 Common - hypothetical protein PP_0349 42 COG3182 PiuB, Uncharacterized iron-regulated membrane protein Function unknown 26987974 Common - metallo-beta-lactamase family protein PP_1239 65 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 26988683 Common - hypothetical protein PP_1956 19 COG4313 COG4313, Protein involved in meta-pathway of phenol degradation Energy production and conversion 26992021 Common - acetyltransferase, GNAT family PP_5345 76 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 26990202 Common - hypothetical protein PP_3490 4 None None None 26989893 Common - oxidoreductase, putative PP_3174 201 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 26990387 Common - hypothetical protein PP_3678 2 None None None 26988775 Common - conserved hypothetical protein TIGR00051 PP_2050 63 COG0824 FcbC, Predicted thioesterase General function prediction only 26990584 Common - phage portal protein, HK97 family PP_3879 65 COG4695 COG4695, Phage-related protein Function unknown 26989611 Common - hypothetical protein PP_2892 141 COG0729 COG0729, Outer membrane protein Cell envelope biogenesis, outer membrane 26990872 Common - hypothetical protein PP_4180 26 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 26991835 Common - hypothetical protein PP_5159 30 COG3751 EGL-9, Predicted proline hydroxylase Posttranslational modification, protein turnover, chaperones 26989625 Common - sensor histidine kinase PP_2906 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991960 Common radC DNA repair protein RadC PP_5284 179 COG2003 RadC, DNA repair proteins DNA replication, recombination, and repair 26990373 Common - decarboxylase family protein PP_3662 43 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 26988272 Nonpathogen - hypothetical protein PP_1540 1 None None None 26988350 Common ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PP_1618 189 COG0245 IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Lipid metabolism 26989312 Common - ferric siderophore ABC transporter, permease protein PP_2593 35 COG4605 CeuC, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 26991620 Common - hypothetical protein PP_4942 5 COG5653 COG5653, Protein involved in cellulose biosynthesis (CelD) Cell envelope biogenesis, outer membrane 26987997 Common - transcriptional regulator, LysR family PP_1262 106 COG0583 LysR, Transcriptional regulator Transcription 26989284 Common - hypothetical protein PP_2564 146 COG1741 COG1741, Pirin-related protein General function prediction only 26988092 Common - hypothetical protein PP_1358 34 COG0748 HugZ, Putative heme iron utilization protein Inorganic ion transport and metabolism 26988396 Common purN phosphoribosylglycinamide formyltransferase PP_1664 220 COG0299 PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN Nucleotide transport and metabolism 26988033 Common aapQ general amino acid ABC transporter, permease protein PP_1298 170 COG4597 BatB, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26990905 Common - dipeptidase, putative PP_4213 98 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 26990527 Common - cytochrome c family protein PP_3822 42 COG3258 COG3258, Cytochrome c Energy production and conversion 26989367 Common - universal stress protein family PP_2648 129 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26989823 Common - hypothetical protein PP_3104 1 None None None 26991470 Common lnt apolipoprotein N-acyltransferase PP_4790 165 COG0815 Lnt, Apolipoprotein N-acyltransferase Cell envelope biogenesis, outer membrane 26988653 Common - monooxygenase, putative PP_1925 103 COG2072 TrkA, Predicted flavoprotein involved in K+ transport Inorganic ion transport and metabolism 26987634 Nonpathogen - hypothetical protein PP_0898 1 None None None 26986900 Common pntB pyridine nucleotide transhydrogenase, beta subunit PP_0155 123 COG1282 PntB, NAD/NADP transhydrogenase beta subunit Energy production and conversion 26987946 Common - hypothetical protein PP_1211 22 COG4321 COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis General function prediction only 26988029 Common moaE molybdenum cofactor biosynthesis protein E PP_1294 155 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 26987934 Common - hypothetical protein PP_1199 28 None None None 26989321 Common - oxidoreductase, putative PP_2602 187 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 26988165 Common lepB signal peptidase I PP_1432 210 COG0681 LepB, Signal peptidase I Intracellular trafficking and secretion 26990133 Common - sensor histidine kinase PP_3420 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990554 Common - calcium-binding protein, hemolysin-type PP_3849 69 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 26987552 Common cyoE-2 protoheme IX farnesyltransferase PP_0816 172 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 26987784 Common xcpS-1 type II secretion pathway protein XcpS PP_1048 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 26991419 Common lldD L-lactate dehydrogenase PP_4736 129 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 26986864 Common - transcriptional regulator, Fur family PP_0119 111 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 26991479 Common - muramoyltetrapeptide carboxypeptidase, putative PP_4799 87 COG1619 LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF Defense mechanisms 26990853 Common kdpA potassium-transporting ATPase subunit A PP_4161 96 COG2060 KdpA, K+-transporting ATPase, A chain Inorganic ion transport and metabolism 26986793 Common - hypothetical protein PP_0048 2 None None None 26990865 Common - sensor histidine kinase/response regulator PP_4173 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991898 Common cyaA adenylate cyclase PP_5222 25 COG3072 CyaA, Adenylate cyclase Nucleotide transport and metabolism 26991985 Common - transcriptional regulator, LysR family PP_5309 190 COG0583 LysR, Transcriptional regulator Transcription 26986946 Common - CBS domain protein PP_0202 193 COG0517 COG0517, FOG: CBS domain General function prediction only 26991615 Common - toluene tolerance protein PP_4937 3 None None None 26990360 Common - transcriptional regulator, GntR family PP_3649 135 COG1802 GntR, Transcriptional regulators Transcription 26990935 Common pfrI extracytoplasmic-function sigma-70 factor PvdS PP_4244 83 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26989932 Common - ABC transporter, periplasmic binding component-related protein PP_3213 79 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26987188 Common rpoB DNA-directed RNA polymerase subunit beta PP_0447 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 26989040 Common - ABC transporter, permease protein, putative PP_2316 86 COG3127 COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Secondary metabolites biosynthesis, transport, and catabolism 26989293 Common - glyoxalase family protein PP_2573 35 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 26991773 Common metX homoserine O-acetyltransferase PP_5097 133 COG2021 MET2, Homoserine acetyltransferase Amino acid transport and metabolism 26991791 Common - zinc protease, putative PP_5115 195 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 26989514 Common - acyl-CoA synthetase PP_2795 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26989525 Common - transcriptional regulator, TetR family PP_2806 7 COG3226 COG3226, Uncharacterized protein conserved in bacteria Function unknown 26991058 Common fliF flagellar MS-ring protein PP_4369 125 COG1766 FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein Cell motility and secretion / Intracellular trafficking and secretion 26989158 Common iscS-2 cysteine desulfurase PP_2435 238 COG1104 NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes Amino acid transport and metabolism 26987761 Common leuA 2-isopropylmalate synthase PP_1025 211 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 26991388 Common - hypothetical protein PP_4704 45 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 26990806 Common fusA elongation factor G PP_4111 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 26991038 Common - cystathionine beta-lyase, putative PP_4348 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 26991153 Common - transcriptional regulator, LysR family PP_4467 191 COG0583 LysR, Transcriptional regulator Transcription 26991242 Common - acetyltransferase, GNAT family PP_4558 4 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 26989562 Common ureA urease subunit gamma PP_2843 96 COG0831 UreA, Urea amidohydrolase (urease) gamma subunit Amino acid transport and metabolism 26991240 Common - hypothetical protein PP_4556 12 COG4319 COG4319, Ketosteroid isomerase homolog Function unknown 26989910 Common - hypothetical protein PP_3191 212 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 26988244 Common - hypothetical protein PP_1512 1 None None None 26991080 Common flgB flagellar basal body rod protein FlgB PP_4391 84 COG1815 FlgB, Flagellar basal body protein Cell motility and secretion 26991639 Common - lipoprotein, putative PP_4961 1 COG3895 COG3895, Predicted periplasmic protein General function prediction only 26989640 Common - hypothetical protein PP_2921 98 COG2049 DUR1, Allophanate hydrolase subunit 1 Amino acid transport and metabolism 26989410 Common - hypothetical protein PP_2691 12 None None None 26988892 Common tal transaldolase B PP_2168 173 COG0176 MipB, Transaldolase Carbohydrate transport and metabolism 26988698 Common tyrB-1 aromatic amino acid aminotransferase PP_1972 70 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26988382 Common gacS sensor histidine kinase/response regulator GacS PP_1650 226 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987686 Common ptsN phosphotransferase system, nitrogen regulatory IIA protein PP_0950 134 COG1762 PtsN, Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) Carbohydrate transport and metabolism / Signal transduction mechanisms 26991310 Common - LrgA family protein PP_4626 56 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 26988016 Common algL poly(beta-D-mannuronate) lyase PP_1281 4 None None None 26990245 Common - ornithine cyclodeaminase PP_3533 87 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 26990457 Common - cyanate transporter, putative PP_3751 42 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 26990877 Common sucD succinyl-CoA synthetase subunit alpha PP_4185 217 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 26991767 Common - hypothetical protein PP_5091 15 COG2314 XynA, Predicted membrane protein Function unknown 26991604 Common - HlyD family secretion protein PP_4926 115 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26990257 Common - sensory box histidine kinase/response regulator PP_3545 199 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26988902 Common - glutamine synthetase, putative PP_2178 224 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26990250 Common pobR transcriptional regulator PobR PP_3538 92 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26988047 Common - hypothetical protein PP_1312 103 COG1485 COG1485, Predicted ATPase General function prediction only 26989644 Common mqo-3 malate:quinone oxidoreductase PP_2925 58 COG0579 COG0579, Predicted dehydrogenase General function prediction only 26988473 Common - hypothetical protein PP_1742 51 COG3162 COG3162, Predicted membrane protein Function unknown 26987560 Common - phosphate ABC transporter, periplasmic phosphate-binding protein, putative PP_0824 97 COG3221 PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component Inorganic ion transport and metabolism 26989937 Common - alkansulfonate monooxygenase, putative PP_3219 81 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26991089 Common bkdR transcriptional regulator BkdR PP_4400 157 COG1522 Lrp, Transcriptional regulators Transcription 26989461 Common - hypothetical protein PP_2742 23 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 26990513 Common - hypothetical protein PP_3808 31 COG3251 COG3251, Uncharacterized protein conserved in bacteria Function unknown 26988252 Common plsB glycerol-3-phosphate acyltransferase PP_1520 48 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 26986923 Common - efflux transporter, outer membrane protein, putative PP_0179 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26986843 Nonpathogen - hypothetical protein PP_0098 1 COG0339 Dcp, Zn-dependent oligopeptidases Amino acid transport and metabolism 26990075 Common - hypothetical protein PP_3360 227 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26991801 Common mutM formamidopyrimidine-DNA glycosylase PP_5125 180 COG0266 Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair 26990998 Common - hypothetical protein PP_4307 63 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 26991649 Common - outer membrane-bound lytic murein transglycolase A, putative PP_4971 93 COG2821 MltA, Membrane-bound lytic murein transglycosylase Cell envelope biogenesis, outer membrane 26987364 Common - hypothetical protein PP_0628 1 None None None 26989813 Common - hypothetical protein PP_3094 25 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 26991344 Common - transcriptional regulator, LysR family PP_4660 188 COG0583 LysR, Transcriptional regulator Transcription 26988054 Common petC ubiquinol--cytochrome c reductase, cytochrome c1 PP_1319 43 COG2857 CYT1, Cytochrome c1 Energy production and conversion 26990149 Common rarD-2 rarD protein PP_3436 93 COG2962 RarD, Predicted permeases General function prediction only 26988617 Common - hypothetical protein PP_1887 23 None None None 26990045 Common - ring-cleaving dioxygenase, putative PP_3328 34 COG3565 COG3565, Predicted dioxygenase of extradiol dioxygenase family General function prediction only 26988492 Common - sensory box protein/GGDEF family protein PP_1761 187 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 26992009 Common - hypothetical protein PP_5333 18 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 26987646 Common - hypothetical protein PP_0910 49 COG3488 COG3488, Predicted thiol oxidoreductase Energy production and conversion 26991110 Common - succinate-semialdehyde dehydrogenase, putative PP_4422 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987052 Common - oxidoreductase, FMN-binding PP_0310 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26990126 Common - sensor histidine kinase/response regulator PP_3413 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987064 Common glyA-1 serine hydroxymethyltransferase PP_0322 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 26987841 Common - ATP-dependent DNA ligase PP_1105 101 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 26987602 Common - transmembrane sensor, putative PP_0866 49 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26988280 Common - hypothetical protein PP_1548 4 COG3793 TerB, Tellurite resistance protein Inorganic ion transport and metabolism 26989509 Common - sigma-54 dependent sensory box protein PP_2790 169 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 26991351 Common mmsA-2 methylmalonate semialdehyde dehydrogenase PP_4667 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26988826 Common - DNA-binding response regulator, LuxR family PP_2101 223 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26991953 Common - major facilitator family transporter PP_5277 29 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 26989077 Nonpathogen - hypothetical protein PP_2353 1 None None None 26990507 Common - cation ABC transporter, ATP-binding protein, putative PP_3802 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 26990892 Common - hypothetical protein PP_4200 15 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26991182 Common - conserved hypothetical protein TIGR00281 PP_4497 147 COG1386 COG1386, Predicted transcriptional regulator containing the HTH domain Transcription 26988531 Common wbpY glycosyl transferase WbpY PP_1801 182 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26991229 Common - 3-oxoacyl-(acyl carrier protein) synthase III PP_4545 197 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 26986973 Common tauD taurine dioxygenase PP_0230 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26988259 Common - ThiF family protein PP_1527 144 COG1179 COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Coenzyme metabolism 26988810 Common cmaX cmaX protein PP_2085 56 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 26987287 Common - lipoprotein, putative PP_0549 1 COG5645 COG5645, Predicted periplasmic lipoprotein General function prediction only 26989832 Common - ISPpu13, transposase Orf1 PP_3113 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988639 Common - hypothetical protein PP_1910 40 COG1399 COG1399, Predicted metal-binding, possibly nucleic acid-binding protein General function prediction only 26988672 Common folD-1 5,10-methylene-tetrahydrofolate dehydrogenase/cyclohydrolase PP_1945 223 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 26990356 Common - hydrolase, alpha/beta fold family PP_3645 199 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26989354 Common bcsA cellulose synthase catalytic subunit PP_2635 122 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 26992013 Common - transcriptional regulator, LysR family PP_5337 179 COG0583 LysR, Transcriptional regulator Transcription 26990820 Common nuoI NADH dehydrogenase subunit I PP_4126 191 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 26989976 Common - hypothetical protein PP_3258 18 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 26990039 Common - hypothetical protein PP_3321 17 COG4875 COG4875, Uncharacterized protein conserved in bacteria with a cystatin-like fold Function unknown 26991891 Common trx-2 thioredoxin PP_5215 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 26991041 Common flhB flagellar biosynthesis protein FlhB PP_4352 130 COG1377 FlhB, Flagellar biosynthesis pathway, component FlhB Cell motility and secretion / Intracellular trafficking and secretion 26987932 Common - conserved hypothetical protein TIGR01125 PP_1197 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 26992059 Common copR transcriptional activator CopR PP_5383 222 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988844 Common - methyl-accepting chemotaxis transducer PP_2120 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26988247 Common - transcriptional regulator, tetR family PP_1515 101 COG1309 AcrR, Transcriptional regulator Transcription 26989719 Common - MaoC domain protein PP_3000 89 COG2030 MaoC, Acyl dehydratase Lipid metabolism 26988430 Common - major facilitator family transporter PP_1698 185 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989441 Common - hypothetical protein PP_2722 11 COG2846 COG2846, Regulator of cell morphogenesis and NO signaling Cell division and chromosome partitioning 26988713 Common - methlytransferase, UbiE/COQ5 family PP_1987 210 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26987899 Common - transcriptional regulator, LysR family PP_1164 132 COG0583 LysR, Transcriptional regulator Transcription 26989788 Common - outer membrane autotransporter PP_3069 40 COG3468 AidA, Type V secretory pathway, adhesin AidA Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26991453 Common hrpB ATP-dependent helicase HrpB PP_4772 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 26988359 Common - hypothetical protein PP_1627 5 None None None 26990238 Common - transcriptional regulator, AraC family PP_3526 129 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26987745 Common gap-1 glyceraldehyde-3-phosphate dehydrogenase PP_1009 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 26991224 Common - hydrolase, alpha/beta fold family PP_4540 200 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26987260 Common ribA GTP cyclohydrolase II PP_0522 195 COG0807 RibA, GTP cyclohydrolase II Coenzyme metabolism 26989897 Common - conserved hypothetical protein TIGR00045 PP_3178 81 COG1929 COG1929, Glycerate kinase Carbohydrate transport and metabolism 26991880 Common - hypothetical protein PP_5204 1 None None None 26987145 Common surA survival protein SurA PP_0403 167 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 26989978 Common ligD ATP-dependent DNA ligase PP_3260 100 COG3285 COG3285, Predicted eukaryotic-type DNA primase DNA replication, recombination, and repair 26991603 Common - hypothetical protein PP_4925 2 None None None 26989669 Common - hypothetical protein PP_2950 49 COG3558 COG3558, Uncharacterized protein conserved in bacteria Function unknown 26989580 Common - methyl-accepting chemotaxis transducer PP_2861 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26991149 Common - carbon-nitrogen hydrolase family protein PP_4463 203 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26989963 Nonpathogen - hypothetical protein PP_3245 1 None None None 26990620 Nonpathogen - hypothetical protein PP_3915 1 None None None 26987677 Common - hypothetical protein PP_0941 62 COG3028 COG3028, Uncharacterized protein conserved in bacteria Function unknown 26990701 Common - hypothetical protein PP_3996 55 COG2920 DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit Inorganic ion transport and metabolism 26988341 Nonpathogen - hypothetical protein PP_1609 1 None None None 26991892 Common ppx exopolyphosphatase PP_5216 179 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 26991510 Common cobL precorrin-6Y C5,15-methyltransferase (decarboxylating) PP_4830 103 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 26991002 Common - D-amino acid dehydrogenase, small subunit, putative PP_4311 115 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26988623 Common fadE acyl-CoA dehydrogenase PP_1893 160 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987729 Common - hypothetical protein PP_0993 30 COG5572 COG5572, Predicted integral membrane protein Function unknown 26989485 Common - long-chain-fatty-acid--CoA ligase-related protein PP_2766 40 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 26986935 Common pfrA anti-RNA polymerase sigma 70 factor PP_0191 24 COG3160 Rsd, Regulator of sigma D Transcription 26991752 Common gltB glutamate synthase subunit alpha PP_5076 204 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 26990369 Common - aromatic compound MFS transporter, putative PP_3658 210 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991066 Common - flagellin FlaG, putative PP_4377 8 COG1334 FlaG, Uncharacterized flagellar protein FlaG Cell motility and secretion 26987120 Common pqqC pyrroloquinoline quinone biosynthesis protein PqqC PP_0378 39 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 26986943 Common - SPFH domain/Band 7 family protein PP_0199 206 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 26986986 Common gshA glutamate--cysteine ligase PP_0243 58 COG2918 GshA, Gamma-glutamylcysteine synthetase Coenzyme metabolism 26989678 Common - alkylhydroperoxidase AhpD domain protein PP_2959 76 COG2128 COG2128, Uncharacterized conserved protein Function unknown 26989905 Common - transcriptional activator, putative PP_3186 74 COG0819 TenA, Putative transcription activator Transcription 161378136 Common rhlB ATP-dependent RNA helicase RhlB PP_1295 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 26990032 Common - heat shock protein, HSP20 family PP_3314 134 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 26988986 Common - sugar ABC transporter, permease protein PP_2262 147 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 26989346 Common - hypothetical protein PP_2627 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 26990859 Common sixA phosphohistidine phosphatase SixA PP_4167 54 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 26991925 Common - transcriptional regulator, LysR family PP_5249 161 COG0583 LysR, Transcriptional regulator Transcription 26990265 Common - acyl-CoA synthetase PP_3553 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26990945 Nonpathogen - hypothetical protein PP_4254 1 None None None 26989923 Common - hypothetical protein PP_3204 15 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 26991660 Common - flavin-containing monamine oxidase family protein PP_4983 43 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 26987383 Nonpathogen - hypothetical protein PP_0647 1 None None None 26991495 Common - hypothetical protein PP_4815 84 COG1346 LrgB, Putative effector of murein hydrolase Cell envelope biogenesis, outer membrane 26988944 Common - C4-type zinc finger protein, DksA/TraR family PP_2220 137 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 26990415 Common - hypothetical protein PP_3707 7 None None None 26990390 Common - helicase, putative PP_3681 209 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 26988888 Common - hypothetical protein PP_2164 4 None None None 26989516 Common actP acetate permease PP_2797 155 COG4147 DhlC, Predicted symporter General function prediction only 26990056 Common - nickel responsive regulator PP_3341 64 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 26987212 Common rpsE 30S ribosomal protein S5 PP_0471 245 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 26991186 Common ispZ intracellular septation protein A PP_4501 88 COG2917 COG2917, Intracellular septation protein A Cell division and chromosome partitioning 26987276 Common ppa inorganic pyrophosphatase PP_0538 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 26987241 Common - hypothetical protein PP_0502 128 COG1733 COG1733, Predicted transcriptional regulators Transcription 26987517 Common - hypothetical protein PP_0781 1 None None None 26988866 Common - cell division inhibitor-related protein PP_2142 2 COG5404 SulA, SOS-response cell division inhibitor, blocks FtsZ ring formation Cell division and chromosome partitioning 26991541 Common - hypothetical protein PP_4861 1 None None None 26988287 Common - phage integrase, putative PP_1555 80 COG0582 XerC, Integrase DNA replication, recombination, and repair 26988915 Common - lipoprotein, putative PP_2191 13 COG5608 COG5608, Conserved secreted protein Function unknown 26987528 Common fruR DNA-binding transcriptional regulator FruR PP_0792 120 COG1609 PurR, Transcriptional regulators Transcription 26988720 Common trpF N-(5'-phosphoribosyl)anthranilate isomerase PP_1995 194 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 26989766 Common - hypothetical protein PP_3047 18 None None None 26990204 Common acdA acyl-CoA dehydrogenase PP_3492 166 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987587 Common pilF type IV pili biogenesis protein PilF PP_0851 69 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 26988146 Common ung uracil-DNA glycosylase PP_1413 129 COG0692 Ung, Uracil DNA glycosylase DNA replication, recombination, and repair 26990378 Common - creatinase PP_3667 145 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 26991358 Common recC exodeoxyribonuclease V, gamma subunit PP_4674 65 COG1330 RecC, Exonuclease V gamma subunit DNA replication, recombination, and repair 26986828 Common trpB tryptophan synthase subunit beta PP_0083 226 COG0133 TrpB, Tryptophan synthase beta chain Amino acid transport and metabolism 26987478 Common - hypothetical protein PP_0742 39 COG3380 COG3380, Predicted NAD/FAD-dependent oxidoreductase General function prediction only 26987659 Common - acyltransferase PP_0923 87 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 26988695 Common - molybdenum cofactor biosynthesis protein A, putative PP_1969 196 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 26988422 Common - hypothetical protein PP_1690 1 None None None 26990341 Common - porin, putative PP_3630 8 None None None 26988035 Common aapP general amino acid ABC transporter, ATP-binding protein PP_1300 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26991119 Common - ornithine cyclodeaminase PP_4431 85 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 26991592 Common - hypothetical protein PP_4914 1 COG4222 COG4222, Uncharacterized protein conserved in bacteria Function unknown 26987584 Common - hypothetical protein PP_0848 43 COG2975 COG2975, Uncharacterized protein conserved in bacteria Function unknown 26990924 Common - cytochrome c family protein PP_4232 55 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26991889 Common - conserved hypothetical protein TIGR00148 PP_5213 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 26989790 Common - acetyl-CoA synthetase PP_3071 199 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 26988661 Nonpathogen - hypothetical protein PP_1933 1 None None None 26991721 Common thiI thiamine biosynthesis protein ThiI PP_5045 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 26989245 Common - hypothetical protein PP_2525 33 COG4637 COG4637, Predicted ATPase General function prediction only 26991729 Common secB preprotein translocase subunit SecB PP_5053 107 COG1952 SecB, Preprotein translocase subunit SecB Intracellular trafficking and secretion 26986800 Common - transcriptional regulator, LysR family PP_0055 154 COG0583 LysR, Transcriptional regulator Transcription 26991140 Common - opine ABC transporter, permease protein, putative PP_4454 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26988003 Common - putative regulator PrlF PP_1268 16 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 26991271 Common - hypothetical protein PP_4587 74 COG2983 COG2983, Uncharacterized conserved protein Function unknown 26989807 Common - hypothetical protein PP_3088 31 COG3515 COG3515, Uncharacterized protein conserved in bacteria Function unknown 26991730 Common - glutaredoxin PP_5054 127 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 26986938 Common algP alginate regulatory protein AlgP PP_0194 1 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26987732 Common gltS sodium-glutamate symporter PP_0996 51 COG0786 GltS, Na+/glutamate symporter Amino acid transport and metabolism 26987442 Common ada adaptive response regulator protein PP_0706 178 COG2169 Ada, Adenosine deaminase Nucleotide transport and metabolism 26987449 Common - potassium efflux transporter, putative PP_0713 189 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 26989833 Common - ISPpu13, transposase Orf2 PP_3114 67 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988664 Nonpathogen - hypothetical protein PP_1936 8 COG4928 COG4928, Predicted P-loop ATPase General function prediction only 26990064 Common - putative 3-hydroxyphenylpropionic transporter MhpT PP_3349 111 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990093 Common kguK 2-ketogluconate kinase PP_3378 177 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 26987576 Common cysE serine O-acetyltransferase PP_0840 192 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 26989639 Common - hypothetical protein PP_2920 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 26986810 Common trkA potassium transporter peripheral membrane component PP_0065 139 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 26988451 Common prc tail-specific protease prc PP_1719 181 COG0793 Prc, Periplasmic protease Cell envelope biogenesis, outer membrane 26988854 Common - soluble lytic transglycosylase, putative PP_2130 164 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 26991923 Common - hypothetical protein PP_5247 1 None None None 26986950 Common - ferredoxin, 4Fe-4S PP_0206 40 COG1146 COG1146, Ferredoxin Energy production and conversion 26987105 Common bioF 8-amino-7-oxononanoate synthase PP_0363 189 COG0156 BioF, 7-keto-8-aminopelargonate synthetase and related enzymes Coenzyme metabolism 26989741 Common - transcriptional regulator, AraC family PP_3022 130 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26992057 Nonpathogen - hypothetical protein PP_5381 1 None None None 26987701 Common hisG ATP phosphoribosyltransferase catalytic subunit PP_0965 208 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 26986750 Common trmE tRNA modification GTPase TrmE PP_0005 224 COG0486 ThdF, Predicted GTPase General function prediction only 26988920 Common speB agmatinase PP_2196 155 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 26991436 Common - outer membrane ferrichrome-iron receptor PP_4755 124 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26991000 Common - transporter, NCS1 nucleoside transporter family PP_4309 62 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 26990215 Common - sigma-54 dependent transcriptional regulator PP_3503 173 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990331 Common - hypothetical protein PP_3620 47 COG1944 COG1944, Uncharacterized conserved protein Function unknown 26991262 Common - major facilitator family transporter PP_4578 219 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26990670 Common - ISPpu14, transposase Orf2 PP_3965 38 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26991947 Common lrp leucine-responsive regulatory protein PP_5271 164 COG1522 Lrp, Transcriptional regulators Transcription 26990545 Common - hypothetical protein PP_3840 3 None None None 26991707 Common - amino acid transporter PP_5031 180 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26987878 Common - hypothetical protein PP_1142 11 COG5626 COG5626, Uncharacterized small conserved protein Function unknown 26987681 Common - hypothetical protein PP_0945 5 None None None 26988390 Common - hypothetical protein PP_1658 30 COG3122 COG3122, Uncharacterized protein conserved in bacteria Function unknown 26988935 Common - transcriptional regulator, AraC family PP_2211 73 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991995 Common - hypothetical protein PP_5319 37 COG4315 COG4315, Uncharacterized protein conserved in bacteria Function unknown 26988625 Common - ABC transporter, ATP-binding protein PP_1895 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 26989632 Common hemB-1 delta-aminolevulinic acid dehydratase PP_2913 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 26989734 Common - medium-chain acyl-CoA ligase domain protein PP_3015 61 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26989721 Common aroE-2 shikimate 5-dehydrogenase PP_3002 198 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 26987901 Common - hypothetical protein PP_1166 2 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 26987176 Common - peptidase, M23/M37 family PP_0435 185 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 26989732 Nonpathogen - hypothetical protein PP_3013 1 None None None 26991539 Common - transcriptional regulator, TetR family PP_4859 40 COG1309 AcrR, Transcriptional regulator Transcription 26992015 Common - transcriptional regulator, AraC family PP_5339 89 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991557 Common rpsF 30S ribosomal protein S6 PP_4877 195 COG0360 RpsF, Ribosomal protein S6 Translation, ribosomal structure and biogenesis 26987969 Common - permease PerM, putative PP_1234 91 COG0628 PerM, Predicted permease General function prediction only 26990293 Common - GGDEF domain protein PP_3581 177 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26987015 Common - hypothetical protein PP_0273 10 None None None 26988110 Common pcaK 4-hydroxybenzoate transporter PP_1376 105 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990404 Common - hypothetical protein PP_3696 19 COG4913 COG4913, Uncharacterized protein conserved in bacteria Function unknown 26990297 Common - ISPpu9, transposase PP_3586 30 None None None 26988320 Common - hypothetical protein PP_1588 241 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26990028 Common - oxidoreductase, large subunit, putative PP_3310 117 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 26990057 Common nikA nickel ABC transporter, periplasmic nickel-binding protein PP_3342 196 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26987127 Common - hypothetical protein PP_0385 6 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 26987708 Common - hypothetical protein PP_0972 66 COG2827 COG2827, Predicted endonuclease containing a URI domain DNA replication, recombination, and repair 26991532 Common - transcriptional regulator, AraC family PP_4852 79 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991743 Common - potassium efflux protein KefA PP_5067 222 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26990679 Common - transcriptional regulator, LysR family PP_3974 120 COG0583 LysR, Transcriptional regulator Transcription 26986844 Common - hypothetical protein PP_0099 104 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 26990646 Common - hydrolase, isochorismatase family PP_3941 105 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26990128 Common - transcriptional regulator, LacI family PP_3415 121 COG1609 PurR, Transcriptional regulators Transcription 26989888 Common - hypothetical protein PP_3169 26 COG1988 COG1988, Predicted membrane-bound metal-dependent hydrolases General function prediction only 26987152 Common - polyamine ABC transporter, ATP-binding protein PP_0411 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26991991 Common rubA rubredoxin PP_5315 116 COG1773 COG1773, Rubredoxin Energy production and conversion 26991917 Common - DNA-binding response regulator, LuxR family PP_5241 181 COG4566 TtrR, Response regulator Signal transduction mechanisms 26986903 Common - CAIB/BAIF family protein PP_0159 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 26991848 Common - hypothetical protein PP_5172 2 COG5583 COG5583, Uncharacterized small protein Function unknown 26988148 Common - hypothetical protein PP_1415 55 COG3180 AbrB, Putative ammonia monooxygenase General function prediction only 26988575 Common - enoyl-CoA hydratase PP_1845 126 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26988925 Common - hydrolase, alpha/beta fold family PP_2201 158 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26988756 Common - hypothetical protein PP_2031 92 COG1721 COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) General function prediction only 26988643 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase PP_1914 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991135 Nonpathogen - hypothetical protein PP_4449 1 None None None 26991611 Common - hypothetical protein PP_4933 1 None None None 26991970 Common rph ribonuclease PH PP_5294 196 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 26990926 Common dsbD-2 thiol:disulfide interchange protein DsbD PP_4235 77 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 26988559 Common - hydrolase, alpha/beta fold family PP_1829 31 COG2267 PldB, Lysophospholipase Lipid metabolism 26988537 Common kdsA-2 2-dehydro-3-deoxyphosphooctonate aldolase PP_1807 186 COG2877 KdsA, 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase Cell envelope biogenesis, outer membrane 26991399 Common glmM phosphoglucosamine mutase PP_4716 242 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 26990363 Common - transporter, LysE family PP_3652 102 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26988178 Common oprB-2 porin B PP_1445 20 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 26991195 Common - hypothetical protein PP_4510 67 COG2908 COG2908, Uncharacterized protein conserved in bacteria Function unknown 161378129 Common dnaE2 error-prone DNA polymerase PP_3119 216 COG0587 DnaE, DNA polymerase III, alpha subunit DNA replication, recombination, and repair 26987413 Common - lipoprotein, putative PP_0677 5 None None None 26990511 Common - hydrolase, isochorismatase family PP_3806 55 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26992062 Common - heavy metal RND efflux membrane fusion protein, CzcB family PP_5386 154 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26988874 Common - thiamine biosynthesis lipoprotein, putative PP_2150 137 COG1477 ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis Coenzyme metabolism 26991296 Common - FecR protein, putative PP_4612 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26988423 Common - hypothetical protein PP_1691 1 None None None 26989336 Common - hypothetical protein PP_2617 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 26991487 Common mrdA-2 penicillin-binding protein 2 PP_4807 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 26991330 Common - ferredoxin--NADP+ reductase, putative PP_4646 120 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26989414 Common - transcriptional regulator, LysR family PP_2695 187 COG0583 LysR, Transcriptional regulator Transcription 26987758 Common zwf-1 glucose-6-phosphate 1-dehydrogenase PP_1022 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 26988119 Common ttgB multidrug/solvent RND transporter TtgB PP_1385 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26987362 Common ndh NADH dehydrogenase PP_0626 187 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 26991387 Common - hypothetical protein PP_4703 26 COG3662 COG3662, Uncharacterized protein conserved in bacteria Function unknown 26988261 Common csdA cysteine sulfinate desulfinase PP_1529 237 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 26990797 Common - hypothetical protein PP_4102 77 COG3189 COG3189, Uncharacterized conserved protein Function unknown 26991965 Common argB acetylglutamate kinase PP_5289 219 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 26987657 Common - Transcriptional regulator, ArsR family PP_0921 48 COG0640 ArsR, Predicted transcriptional regulators Transcription 26991357 Common recB exodeoxyribonuclease V, beta subunit PP_4673 209 COG1074 RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) DNA replication, recombination, and repair 26990302 Common - malate dehydrogenase, putative PP_3591 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 26990704 Common cobA-2 uroporphyrin-III C-methyltransferase PP_3999 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 26987960 Common - radical activating enzyme PP_1225 126 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 26987600 Common - ornithine decarboxylase, putative PP_0864 217 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 26989133 Common - cobalt-zinc-cadmium resistance protein CzcA PP_2410 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 26990742 Common - hypothetical protein PP_4041 72 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 26987250 Common - hypothetical protein PP_0512 1 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 26987890 Common - sensory box protein PP_1154 180 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26991676 Common pyrC dihydroorotase PP_4999 211 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 26990325 Common - succinate dehydrogenase cytochrome b subunit family protein PP_3614 11 COG4244 COG4244, Predicted membrane protein Function unknown 26988206 Common - hypothetical protein PP_1473 1 None None None 26992033 Common pkxY pyridoxamine kinase PP_5357 63 COG2240 PdxK, Pyridoxal/pyridoxine/pyridoxamine kinase Coenzyme metabolism 26990546 Common - transcriptional regulator, MerR family PP_3841 131 COG0789 SoxR, Predicted transcriptional regulators Transcription 26987025 Common - amino acid ABC transporter, ATP-binding protein PP_0283 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 161378147 Common rplC 50S ribosomal protein L3 PP_0454 237 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 26987369 Common pilC type IV pili biogenesis protein PilC PP_0633 142 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 26989189 Common infC translation initiation factor IF-3 PP_2466 212 COG0290 InfC, Translation initiation factor 3 (IF-3) Translation, ribosomal structure and biogenesis 26991079 Common flgC flagellar basal body rod protein FlgC PP_4390 124 COG1558 FlgC, Flagellar basal body rod protein Cell motility and secretion 26987336 Common - PqiB family protein PP_0599 56 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 26990183 Common - hypothetical protein PP_3471 8 None None None 26988215 Common - polyamine ABC transporter, permease protein PP_1482 178 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 26987918 Common - siderophore biosynthesis protein, putative PP_1183 37 COG2977 EntD, Phosphopantetheinyl transferase component of siderophore synthetase Secondary metabolites biosynthesis, transport, and catabolism 26989841 Common - CoA-transferase, subunit A, putative PP_3122 100 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 26989530 Common - hypothetical protein PP_2811 18 None None None 26990445 Common - transcriptional regulator VanR, putative PP_3738 123 COG1802 GntR, Transcriptional regulators Transcription 26986876 Common - hypothetical protein PP_0131 162 COG4943 COG4943, Predicted signal transduction protein containing sensor and EAL domains Signal transduction mechanisms 26987070 Common fdhA formaldehyde dehydrogenase, glutathione-independent PP_0328 190 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 26988014 Common algJ alginate O-acetylation protein AlgJ PP_1279 8 None None None 26991696 Common - methyl-accepting chemotaxis transducer PP_5020 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26990840 Common - peptide ABC transporter, periplamic peptide-binding protein PP_4147 172 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 26991302 Common - hypothetical protein PP_4618 40 COG2912 COG2912, Uncharacterized conserved protein Function unknown 26991409 Common dnaJ dnaJ protein PP_4726 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 26989928 Common - amidohydrolase PP_3209 168 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 26987066 Common soxD sarcosine oxidase, delta subunit PP_0324 33 COG4311 SoxD, Sarcosine oxidase delta subunit Amino acid transport and metabolism 26986775 Common - sensor histidine kinase PP_0030 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990656 Common pcaI 3-oxoadipate CoA-transferase, subunit A PP_3951 101 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 26987751 Common - sugar ABC transporter, periplasmic sugar-binding protein PP_1015 69 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 26987775 Common tatC-1 Sec-independent periplasmic protein translocator TatC PP_1039 199 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 26988470 Common - hypothetical protein PP_1739 1 None None None 26988449 Common - hypothetical protein PP_1717 2 None None None 26989553 Common - hydrolase, UxaA family PP_2834 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 26986896 Common - hypothetical protein PP_0151 3 None None None 26990788 Common - ISPpu15, transposase Orf1 PP_4092 50 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987221 Common rplQ 50S ribosomal protein L17 PP_0480 216 COG0203 RplQ, Ribosomal protein L17 Translation, ribosomal structure and biogenesis 26987487 Common mqo-1 malate:quinone oxidoreductase PP_0751 55 COG0579 COG0579, Predicted dehydrogenase General function prediction only 26988373 Common - hypothetical protein PP_1641 162 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 26991116 Common - amino acid ABC transporter, periplasmic amino acid-binding protein PP_4428 127 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26990786 Nonpathogen - hypothetical protein PP_4087 1 None None None 26986956 Common gabD succinate-semialdehyde dehydrogenase I PP_0213 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987826 Common - DNA-binding response regulator, LuxR family PP_1090 220 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26990050 Common - hypothetical protein PP_3335 1 None None None 26987743 Common - transmembrane sensor, putative PP_1007 46 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26990191 Nonpathogen - hypothetical protein PP_3479 1 None None None 26987816 Common - oxidoreductase, putative PP_1080 181 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 26988846 Common moaB-1 molybdenum cofactor biosynthesis protein B PP_2122 189 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 26990469 Common - porin, putative PP_3764 11 None None None 26991276 Common - hypothetical protein PP_4592 65 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 26986786 Common cadA-1 cadmium translocating P-type ATPase PP_0041 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 26989988 Common phaL bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase PP_3270 213 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26990397 Common - serine/threonine protein phosphatase, putative PP_3689 32 COG3855 Fbp, Uncharacterized protein conserved in bacteria Carbohydrate transport and metabolism 26989815 Common - hypothetical protein PP_3096 47 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 26988191 Common - metabolite-proton symporter PP_1458 138 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990724 Common topB DNA topoisomerase III PP_4019 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 26990213 Common - ISPpu14, transposase Orf3 PP_3501 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987995 Common - ISPpu9, transposase PP_1260 30 None None None 26990978 Common - hypothetical protein PP_4287 43 COG3195 COG3195, Uncharacterized protein conserved in bacteria Function unknown 26989209 Common - NADH-dependent flavin oxidoreductase, Oye family PP_2486 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 161378119 Common - AMP nucleosidase PP_4779 56 COG0775 Pfs, Nucleoside phosphorylase Nucleotide transport and metabolism 26988135 Common dctD C4-dicarboxylate transport transcriptional regulatory protein PP_1401 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990438 Common - transcriptional regulator, TetR family PP_3731 60 COG1309 AcrR, Transcriptional regulator Transcription 26990499 Common pbpG D-alanyl-D-alanine endopeptidase PP_3794 154 COG1686 DacC, D-alanyl-D-alanine carboxypeptidase Cell envelope biogenesis, outer membrane 26991690 Common hisI phosphoribosyl-AMP cyclohydrolase PP_5014 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 26987453 Nonpathogen - hypothetical protein PP_0717 5 COG4129 COG4129, Predicted membrane protein Function unknown 26991392 Common pnp polynucleotide phosphorylase/polyadenylase PP_4708 244 COG1185 Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) Translation, ribosomal structure and biogenesis 26989383 Common - sensory box histidine kinase/response regulator PP_2664 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988404 Common cobO cob(I)yrinic acid a,c-diamide adenosyltransferase PP_1672 142 COG2109 BtuR, ATP:corrinoid adenosyltransferase Coenzyme metabolism 26990106 Common - tartrate MFS transporter, putative PP_3391 95 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26988975 Common - hypothetical protein PP_2251 41 COG4125 COG4125, Predicted membrane protein Function unknown 26987512 Common slyD peptidyl-prolyl cis-trans isomerase, FKBP-type PP_0776 130 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 26986783 Nonpathogen - hypothetical protein PP_0038 1 None None None 26990964 Common - transcriptional regulator, MerR family PP_4273 92 COG0789 SoxR, Predicted transcriptional regulators Transcription 26987303 Common - IPP isomerase type 1 family protein PP_0565 17 COG1443 Idi, Isopentenyldiphosphate isomerase Lipid metabolism 26990715 Common cspD cold-shock protein CspD PP_4010 176 COG1278 CspC, Cold shock proteins Transcription 26987466 Common - hypothetical protein PP_0730 41 COG0439 AccC, Biotin carboxylase Lipid metabolism 26990974 Common - transcriptional regulator, GntR family PP_4283 132 COG1802 GntR, Transcriptional regulators Transcription 26990919 Common - hypothetical protein PP_4227 10 None None None 26987723 Common sda-2 L-serine dehydratase, iron-sulfur-dependent, single chain form PP_0987 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 26989440 Common - hypothetical protein PP_2721 6 None None None 26991566 Common - methyl-accepting chemotaxis transducer, putative PP_4888 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26992046 Common - oxidoreductase-related protein PP_5370 75 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26988299 Common - phage major capsid protein, HK97 family PP_1567 18 None None None 26988972 Common - hypothetical protein PP_2248 20 COG3949 COG3949, Uncharacterized membrane protein Function unknown 26989582 Common - hypothetical protein PP_2863 52 COG3326 COG3326, Predicted membrane protein Function unknown 26988126 Common - NAD-binding protein, putative PP_1392 75 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 26987400 Common - homoserine dehydrogenase PP_0664 216 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 26989577 Common - hypothetical protein PP_2858 1 None None None 26990567 Common - phage assembly protein, putative PP_3862 21 COG4384 COG4384, Mu-like prophage protein gp45 Function unknown 26990009 Common - metallo-beta-lactamase family protein PP_3291 133 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 26991370 Common - lipoprotein, putative PP_4686 33 COG3016 PhuW, Uncharacterized iron-regulated protein Function unknown 26990987 Common - hypothetical protein PP_4296 63 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 26988462 Common - putative aminopeptidase 2 PP_1730 44 COG1362 LAP4, Aspartyl aminopeptidase Amino acid transport and metabolism 26989397 Common - hydrolase, putative PP_2678 62 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 26990841 Common - peptide ABC transporter, permease protein PP_4148 219 COG4174 COG4174, ABC-type uncharacterized transport system, permease component General function prediction only 26989746 Nonpathogen - hypothetical protein PP_3027 1 None None None 26987500 Nonpathogen - hypothetical protein PP_0764 1 None None None 26987187 Common rplL 50S ribosomal protein L7/L12 PP_0446 213 COG0222 RplL, Ribosomal protein L7/L12 Translation, ribosomal structure and biogenesis 26990192 Common - hypothetical protein PP_3480 8 COG3167 PilO, Tfp pilus assembly protein PilO Cell motility and secretion / Intracellular trafficking and secretion 26990524 Common gor glutathione reductase PP_3819 246 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 26988084 Common - sensory box histidine kinase/response regulator PP_1350 218 COG5000 NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Signal transduction mechanisms 26990467 Common - response regulator PP_3762 163 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26987045 Common - hypothetical protein PP_0303 61 COG3246 COG3246, Uncharacterized conserved protein Function unknown 26990560 Nonpathogen - hypothetical protein PP_3855 1 None None None 26990983 Nonpathogen - hypothetical protein PP_4292 1 None None None 26990011 Common - hypothetical protein PP_3293 22 None None None 26990314 Common - transcriptional regulator, GntR family PP_3603 145 COG2186 FadR, Transcriptional regulators Transcription 26991579 Common - hypothetical protein PP_4901 133 COG2860 COG2860, Predicted membrane protein Function unknown 26991512 Common cobK cobalt-precorrin-6x reductase PP_4832 62 COG2099 CobK, Precorrin-6x reductase Coenzyme metabolism 26988511 Common - mannosyltransferase, putative PP_1780 116 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26989603 Common - transcriptional regulator, putative PP_2884 69 COG1396 HipB, Predicted transcriptional regulators Transcription 26987541 Common - outer membrane efflux protein PP_0805 88 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26990710 Common aat leucyl/phenylalanyl-tRNA--protein transferase PP_4005 134 COG2360 Aat, Leu/Phe-tRNA-protein transferase Posttranslational modification, protein turnover, chaperones 26991212 Common - hypothetical protein PP_4527 120 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26989590 Common - hypothetical protein PP_2871 92 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 26987626 Common - hypothetical protein PP_0890 1 None None None 26989010 Nonpathogen - hypothetical protein PP_2286 1 None None None 26988819 Common - nitrate-binding protein NasS, putative PP_2094 96 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26988222 Common - CheW domain protein PP_1489 68 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26989178 Common rbsA ribose ABC transporter, ATP-binding protein PP_2455 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 26990082 Common - hypothetical protein PP_3367 75 COG2945 COG2945, Predicted hydrolase of the alpha/beta superfamily General function prediction only 26988632 Common kdsB 3-deoxy-manno-octulosonate cytidylyltransferase PP_1902 141 COG1212 KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase Cell envelope biogenesis, outer membrane 26990950 Common - iron-sulfur cluster-binding protein PP_4259 78 COG0348 NapH, Polyferredoxin Energy production and conversion 26987193 Common tuf elongation factor Tu PP_0452 249 COG0050 TufB, GTPases - translation elongation factors Translation, ribosomal structure and biogenesis 26987480 Common hemH ferrochelatase PP_0744 159 COG0276 HemH, Protoheme ferro-lyase (ferrochelatase) Coenzyme metabolism 26990827 Common - transcriptional regulator-related protein PP_4133 3 None None None 26991106 Common - hypothetical protein PP_4418 1 None None None 26987609 Common - periplasmic polyamine-binding protein, putative PP_0873 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26986895 Common - hypothetical protein PP_0150 2 None None None 26987405 Common - outer membrane ferric siderophore receptor PP_0669 107 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26991286 Common - transcriptional regulator, AraC family PP_4602 139 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991093 Common lpdV dihydrolipoamide dehydrogenase PP_4404 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 26989423 Common - peptidase, M20/M25/M40 family PP_2704 169 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 26988520 Common - hydrolase, haloacid dehalogenase-like family PP_1789 13 COG0546 Gph, Predicted phosphatases General function prediction only 26987429 Common - hypothetical protein PP_0693 9 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 26989476 Common - sugar-binding protein, putative PP_2757 76 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 26992077 Common - transcriptional regulator, Sir2 family PP_5402 151 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 26989202 Common - cytochrome c family protein PP_2479 55 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26990755 Common - hypothetical protein PP_4054 1 None None None 26987033 Common - hypothetical protein PP_0291 10 COG5460 COG5460, Uncharacterized conserved protein Function unknown 26989407 Common - hypothetical protein PP_2688 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 26992084 Common glmS D-fructose-6-phosphate amidotransferase PP_5409 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 26989214 Common - ThiJ/PfpI family protein PP_2491 96 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 26987845 Common - transcriptional regulator, GntR family PP_1109 164 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26988085 Common - 2-dehydropantoate 2-reductase PP_1351 120 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 26990409 Nonpathogen - hypothetical protein PP_3701 1 None None None 26988593 Common - transcriptional regulator, LysR family PP_1863 180 COG0583 LysR, Transcriptional regulator Transcription 26988865 Common - hypothetical protein PP_2141 4 None None None 26987955 Common tolR biopolymer transport protein TolR PP_1220 130 COG0848 ExbD, Biopolymer transport protein Intracellular trafficking and secretion 26989955 Common - universal stress protein family PP_3237 48 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26990680 Common - hypothetical protein PP_3975 28 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26990490 Nonpathogen - hypothetical protein PP_3785 1 None None None 26989854 Common - glycosyl transferase, putative PP_3135 133 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 26990794 Common gacA DNA-binding response regulator GacA PP_4099 209 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26991841 Common - lipoprotein, putative PP_5165 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 26991940 Common rep ATP-dependent DNA helicase Rep PP_5264 232 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 26990760 Common - trehalose synthase, putative PP_4059 172 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 26991958 Common rpmB 50S ribosomal protein L28 PP_5282 169 COG0227 RpmB, Ribosomal protein L28 Translation, ribosomal structure and biogenesis 26990477 Common - repressor protein-related protein PP_3772 23 COG2932 COG2932, Predicted transcriptional regulator Transcription 26986806 Common glyQ glycyl-tRNA synthetase subunit alpha PP_0061 167 COG0752 GlyQ, Glycyl-tRNA synthetase, alpha subunit Translation, ribosomal structure and biogenesis 26990777 Common - hypothetical protein PP_4077 48 COG3519 COG3519, Uncharacterized protein conserved in bacteria Function unknown 26991505 Common - membrane protein, MarC family PP_4825 158 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 26989171 Common - hypothetical protein PP_2448 121 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26990936 Common - siderophore biosynthesis protein, putative PP_4245 42 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 26991328 Common radA DNA repair protein RadA PP_4644 209 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 26987598 Common - putative hydroxylase PP_0862 45 COG3128 PiuC, Uncharacterized iron-regulated protein Function unknown 26987073 Common - hypothetical protein PP_0331 6 None None None 26988073 Common ddl D-alanine--D-alanine ligase PP_1339 226 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 26990769 Common - transcriptional regulator, Cro/CI family PP_4068 13 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 26990921 Common - hypothetical protein PP_4229 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 26987313 Common - hypothetical protein PP_0575 3 COG4960 CpaA, Flp pilus assembly protein, protease CpaA Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26990770 Common - hypothetical protein PP_4069 1 None None None 26988837 Common - hypothetical protein PP_2113 46 COG2933 COG2933, Predicted SAM-dependent methyltransferase General function prediction only 26989246 Common - hypothetical protein PP_2526 6 None None None 26990695 Common - hypothetical protein PP_3990 128 COG0670 COG0670, Integral membrane protein, interacts with FtsH General function prediction only 26991206 Common - aerotaxis receptor, putative PP_4521 157 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26987989 Common xenA xenobiotic reductase A PP_1254 177 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26988708 Common ibpA heat-shock protein IbpA PP_1982 69 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 26987563 Common - phosphate ABC transporter, permease protein, putative PP_0827 77 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 26988233 Common - hypothetical protein PP_1501 2 None None None 26988300 Nonpathogen - hypothetical protein PP_1568 1 None None None 26991175 Common phhR sigma-54 dependent transcriptional regulator PhhR PP_4489 169 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 26990693 Common - hypothetical protein PP_3988 14 COG0323 MutL, DNA mismatch repair enzyme (predicted ATPase) DNA replication, recombination, and repair 26990942 Common ccoO-1 cytochrome c oxidase, cbb3-type, subunit II PP_4251 82 COG2993 CcoO, Cbb3-type cytochrome oxidase, cytochrome c subunit Energy production and conversion 26988508 Common xanA phosphomannomutase PP_1777 239 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 26989117 Common - leucine-rich repeat domain protein PP_2394 12 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 26991863 Common - hypothetical protein PP_5187 38 COG3025 COG3025, Uncharacterized conserved protein Function unknown 26991824 Common - hypothetical protein PP_5148 3 COG5528 COG5528, Predicted integral membrane protein Function unknown 26990342 Common - hypothetical protein PP_3631 27 COG3103 COG3103, SH3 domain protein Signal transduction mechanisms 26987372 Common - cold shock DNA-binding domain protein PP_0636 27 COG1278 CspC, Cold shock proteins Transcription 26991251 Common - hypothetical protein PP_4567 2 None None None 26991219 Common - hypothetical protein PP_4534 1 None None None 26986985 Common - transcriptional regulator, TetR family PP_0242 7 COG1309 AcrR, Transcriptional regulator Transcription 26991659 Common - hypothetical protein PP_4982 65 COG3038 CybB, Cytochrome B561 Energy production and conversion 26992086 Common glmU UDP-N-acetylglucosamine pyrophosphorylase PP_5411 233 COG1207 GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane 26991046 Common fliN flagellar motor switch protein PP_4357 121 COG1886 FliN, Flagellar motor switch/type III secretory pathway protein Cell motility and secretion / Intracellular trafficking and secretion 26990631 Common - short chain dehydrogenase PP_3926 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26990601 Common - transcriptional regulator, Cro/CI family PP_3896 43 COG2932 COG2932, Predicted transcriptional regulator Transcription 26990811 Nonpathogen - hypothetical protein PP_4117 1 None None None 26988469 Common - hypothetical protein PP_1738 7 None None None 26988458 Common - ABC transporter, periplasmic binding protein PP_1726 54 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 26989232 Common - yedG domain protein PP_2509 3 None None None 26990790 Nonpathogen - hypothetical protein PP_4095 1 None None None 26991291 Common - transmembrane sensor, putative PP_4607 47 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26990283 Common - acetylornithine deacetylase PP_3571 209 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 26987870 Common - hypothetical protein PP_1134 83 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 26990885 Common sdhC succinate dehydrogenase, cytochrome b556 subunit PP_4193 85 COG2009 SdhC, Succinate dehydrogenase/fumarate reductase, cytochrome b subunit Energy production and conversion 26992079 Nonpathogen - transposition protein, TnsC-related protein PP_5404 3 None None None 26988566 Common - hypothetical protein PP_1836 106 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 26990767 Common - gamma-carboxygeranoyl-CoA hydratase PP_4066 179 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26988227 Common - response regulator/GGDEF domain protein PP_1494 214 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26988031 Common estB carboxylesterase PP_1296 81 COG0400 COG0400, Predicted esterase General function prediction only 26987953 Common - conserved hypothetical protein TIGR00051 PP_1218 139 COG0824 FcbC, Predicted thioesterase General function prediction only 26988916 Common - RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein, putative PP_2192 77 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26991167 Common argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein PP_4481 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 26987861 Common dinG ATP-dependent DNA helicase DinG PP_1125 125 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 26988981 Common aer-1 aerotaxis receptor Aer-1 PP_2257 150 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26991849 Common - RND efflux transporter PP_5173 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26992070 Common - hypothetical protein PP_5395 5 COG1568 COG1568, Predicted methyltransferases General function prediction only 26988773 Common - acyl-CoA dehydrogenase, putative PP_2048 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987072 Common - hypothetical protein PP_0330 5 None None None 26988978 Common - transcriptional regulator, GntR family PP_2254 139 COG2186 FadR, Transcriptional regulators Transcription 26988838 Common - ISPpu8, transposase PP_2114 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 26991679 Common - hypothetical protein PP_5002 51 COG3536 COG3536, Uncharacterized protein conserved in bacteria Function unknown 26988402 Common - lipoprotein, putative PP_1670 141 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 26990483 Common proC-1 pyrroline-5-carboxylate reductase PP_3778 205 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 26991809 Common - hypothetical protein PP_5133 8 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 26986803 Common - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative PP_0058 182 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 26989084 Common - type 1 pili subunit CsuA/B protein, putative PP_2360 23 COG5430 COG5430, Uncharacterized secreted protein Function unknown 26987620 Common - dipeptide ABC transporter, periplasmic peptide-binding protein PP_0884 205 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26990890 Common - OmpA family protein PP_4198 172 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26990109 Common - 3-hydroxy-3-methylglutaryl-CoA lyase, putative PP_3394 198 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 26991410 Common dnaK molecular chaperone DnaK PP_4727 235 COG0443 DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones 26990556 Nonpathogen - hypothetical protein PP_3851 1 None None None 26990697 Common - xanthine/uracil permease family protein PP_3992 125 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 26991972 Common gmk guanylate kinase PP_5296 214 COG0194 Gmk, Guanylate kinase Nucleotide transport and metabolism 26990320 Common - hypothetical protein PP_3609 52 COG3238 COG3238, Uncharacterized protein conserved in bacteria Function unknown 26990571 Common - hypothetical protein PP_3866 6 None None None 26990471 Common gloA lactoylglutathione lyase PP_3766 119 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 26987774 Common - hypothetical protein PP_1038 53 COG3323 COG3323, Uncharacterized protein conserved in bacteria Function unknown 26987847 Common - synthetase, putative PP_1111 61 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 26988965 Common - major facilitator family transporter PP_2241 167 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991827 Common - hypothetical protein PP_5151 11 COG3204 COG3204, Uncharacterized protein conserved in bacteria Function unknown 26989852 Common - oxidoreductase, putative PP_3133 60 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26987550 Common cyoC cytochrome o ubiquinol oxidase, subunit III PP_0814 158 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 26991049 Nonpathogen - hypothetical protein PP_4360 1 None None None 26989959 Common - hypothetical protein PP_3241 39 COG3652 COG3652, Predicted outer membrane protein Function unknown 26991853 Common potI putrescine ABC transporter, permease protein PP_5177 182 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 26988482 Common mnmC 5-methylaminomethyl-2-thiouridine methyltransferase PP_1751 90 COG4121 COG4121, Uncharacterized conserved protein Function unknown 26990748 Common - hypothetical protein PP_4047 8 None None None 26989869 Common - hypothetical protein PP_3150 8 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 26991474 Common leuS leucyl-tRNA synthetase PP_4794 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26991249 Common aceK bifunctional isocitrate dehydrogenase kinase/phosphatase protein PP_4565 29 COG4579 COG4579, Isocitrate dehydrogenase kinase/phosphatase Signal transduction mechanisms 26988072 Common murC UDP-N-acetylmuramate--L-alanine ligase PP_1338 211 COG0773 MurC, UDP-N-acetylmuramate-alanine ligase Cell envelope biogenesis, outer membrane 26991233 Common fadD acyl-CoA synthetase PP_4549 223 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26989234 Common - hypothetical protein PP_2511 24 COG3011 COG3011, Uncharacterized protein conserved in bacteria Function unknown 26986788 Common - cobalt/zinc/cadmium efflux RND transporter, permease protein, CzcA family PP_0043 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 26991842 Common - sigma-54 dependent transcriptional regulator PP_5166 170 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 26986762 Common - transcriptional regulator MvaT, P16 subunit, putative PP_0017 4 None None None 26987912 Common nrdB ribonucleotide-diphosphate reductase subunit beta PP_1177 154 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 26987999 Common - fusaric acid resistance protein, putative PP_1264 49 COG1289 COG1289, Predicted membrane protein Function unknown 26991777 Common - coproporphyrinogen III oxidase PP_5101 205 COG0635 HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases Coenzyme metabolism 26990776 Common - hypothetical protein PP_4076 10 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 26990403 Common - hypothetical protein PP_3695 18 COG4924 COG4924, Uncharacterized protein conserved in bacteria Function unknown 26988453 Common - hydrolase, haloacid dehalogenase-like family PP_1721 77 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 26988524 Common - glycosyl transferase, group 2 family protein PP_1793 56 COG1216 COG1216, Predicted glycosyltransferases General function prediction only 26987304 Common - translation initiation factor Sui1 PP_0566 51 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 26991657 Common - ATP-dependent RNA helicase, DEAD box family PP_4980 238 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 26986769 Common - hypothetical protein PP_0024 62 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 26992067 Nonpathogen - hypothetical protein PP_5391 3 None None None 26989384 Common agmR DNA-binding response regulator AgmR PP_2665 179 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26989849 Common - hypothetical protein PP_3130 4 None None None 26987088 Common - heptose kinase WapQ, putative PP_0346 9 None None None 26991103 Nonpathogen - hypothetical protein PP_4414 1 None None None 26989219 Common - hypothetical protein PP_2496 20 None None None 26989138 Common - acetyltransferase, GNAT family PP_2415 7 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 26991941 Common xpt xanthine phosphoribosyltransferase PP_5265 120 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 26988619 Common fimD type 1 pili subunit FimD PP_1889 36 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 26989805 Common - RNA polymerase sigma-70 factor, putative PP_3086 55 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26989105 Common - hypothetical protein PP_2381 1 None None None 26988585 Common - hypothetical protein PP_1855 1 None None None 26990195 Common - type II secretion system protein, putative PP_3483 214 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 26990883 Common sdhA succinate dehydrogenase flavoprotein subunit PP_4191 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 26987992 Common - dihydrodipicolinate synthase family protein PP_1257 141 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 26987460 Common lolB outer membrane lipoprotein LolB PP_0724 54 COG3017 LolB, Outer membrane lipoprotein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 26988102 Common - hypothetical protein PP_1368 20 COG0392 COG0392, Predicted integral membrane protein Function unknown 26988628 Common - MotA/TolQ/ExbB proton channel family protein PP_1898 154 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 26987921 Common phoP transcriptional regulatory protein PhoP PP_1186 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26987000 Common - hypothetical protein PP_0258 52 COG1652 XkdP, Uncharacterized protein containing LysM domain Function unknown 26990446 Common - major facilitator family transporter PP_3740 66 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26987548 Common cyoA cytochrome o ubiquinol oxidase, subunit II PP_0812 116 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 26989125 Common - sensor histidine kinase, putative PP_2402 220 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991687 Common - hypothetical protein PP_5010 8 None None None 26989173 Common - hypothetical protein PP_2450 100 COG0317 SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases Signal transduction mechanisms / Transcription 26990713 Common clpA ATP-dependent Clp protease, ATP-binding subunit ClpA PP_4008 217 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 26991909 Common amtB ammonium transporter PP_5233 202 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 26987407 Common glyA serine hydroxymethyltransferase PP_0671 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 26991902 Nonpathogen - lipoprotein, Lppl family PP_5226 1 COG5567 COG5567, Predicted small periplasmic lipoprotein Cell motility and secretion 26991174 Common - hypothetical protein PP_4488 1 None None None 26991975 Common - glutamine synthetase, putative PP_5299 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26990391 Nonpathogen - hypothetical protein PP_3682 2 None None None 26987325 Common - hypothetical protein PP_0587 1 None None None 26991123 Common - hypothetical protein PP_4435 149 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26992040 Common cls cardiolipin synthetase PP_5364 146 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 26989859 Common - glycosyl transferase, group 2 family protein PP_3140 58 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 26991819 Common - hypothetical protein PP_5143 126 COG0730 COG0730, Predicted permeases General function prediction only 26991647 Common - hypothetical protein PP_4969 18 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26988827 Common - deoxyguanosinetriphosphate triphosphohydrolase-like protein PP_2102 159 COG0232 Dgt, dGTP triphosphohydrolase Nucleotide transport and metabolism 26990638 Common - hypothetical protein PP_3933 122 COG0730 COG0730, Predicted permeases General function prediction only 26987804 Common - amino acid ABC transporter, ATP-binding protein PP_1068 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26990759 Common glgB glycogen branching enzyme PP_4058 145 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 26988929 Common - copper resistance protein, CopA family PP_2205 120 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 26989169 Common - hypothetical protein PP_2446 1 None None None 26990881 Common kgd alpha-ketoglutarate decarboxylase PP_4189 147 COG0567 SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes Energy production and conversion 26988194 Common ffh signal recognition particle protein Ffh PP_1461 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 26991966 Common - ISPpu10, transposase PP_5290 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26991043 Common fliQ flagellar biosynthesis protein FliQ PP_4354 92 COG1987 FliQ, Flagellar biosynthesis pathway, component FliQ Cell motility and secretion / Intracellular trafficking and secretion 26988128 Common - hypothetical protein PP_1394 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 26990962 Nonpathogen - hypothetical protein PP_4271 1 None None None 26991460 Common - acyl-CoA dehydrogenase, putative PP_4780 135 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987485 Common - hypothetical protein PP_0749 1 None None None 26990468 Common - precorrin 6A synthase PP_3763 55 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 26990606 Common - hypothetical protein PP_3901 1 None None None 26991501 Common fis DNA-binding protein Fis PP_4821 94 COG2901 Fis, Factor for inversion stimulation Fis, transcriptional activator Transcription / DNA replication, recombination, and repair 26990015 Nonpathogen - hypothetical protein PP_3297 1 None None None 26990927 Common - thiol:disulfide interchange protein dsbE, putative PP_4236 164 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 26991160 Common alaS alanyl-tRNA synthetase PP_4474 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26989231 Nonpathogen - hypothetical protein PP_2508 1 None None None 26990505 Common - hypothetical protein PP_3800 6 None None None 26991257 Common - ATPase, AAA family PP_4573 99 COG0714 COG0714, MoxR-like ATPases General function prediction only 26989295 Common - hypothetical protein PP_2575 2 None None None 26988405 Common cobB cobyrinic acid a,c-diamide synthase PP_1673 137 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 26987053 Common - iron-sulfur cluster-binding protein PP_0311 84 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 26988950 Common - putative monovalent cation/H+ antiporter subunit F PP_2226 65 COG2212 MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit Inorganic ion transport and metabolism 26990750 Common vgrG-3 vgrG protein PP_4049 53 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 26987565 Common - hypothetical protein PP_0829 38 COG3636 COG3636, Predicted transcriptional regulator Transcription 26990461 Common - transcriptional regulator, TetR family PP_3756 42 COG1309 AcrR, Transcriptional regulator Transcription 26991691 Common hisE phosphoribosyl-ATP pyrophosphatase PP_5015 177 COG0140 HisI, Phosphoribosyl-ATP pyrophosphohydrolase Amino acid transport and metabolism 26988949 Common - putative monovalent cation/H+ antiporter subunit G PP_2225 52 COG1320 MnhG, Multisubunit Na+/H+ antiporter, MnhG subunit Inorganic ion transport and metabolism 26990780 Common - hypothetical protein PP_4080 48 COG3522 COG3522, Uncharacterized protein conserved in bacteria Function unknown 26990685 Common - ISPpu14, transposase Orf2 PP_3980 38 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26991221 Common - carboxylate/amino acid/amine transporter, putative PP_4537 23 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26987404 Common - transmembrane sensor, putative PP_0668 44 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26988269 Nonpathogen - hypothetical protein PP_1537 1 None None None 26988090 Common - hypothetical protein PP_1356 24 COG3695 COG3695, Predicted methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 26988173 Common - methyltransferase, putative PP_1440 56 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 26990971 Common - xanthine dehydrogenase accessory factor XdhC, putative PP_4280 98 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 26992043 Common - transketolase domain protein PP_5367 19 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 26989620 Common - penicillin amidase family protein PP_2901 67 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 26991680 Common phaA poly(3-hydroxyalkanoate) polymerase 1 PP_5003 73 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 26988253 Nonpathogen - hypothetical protein PP_1521 1 None None None 26986991 Common rimK ribosomal protein S6 modification protein PP_0248 148 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 26990796 Common - acetyltransferase, GNAT family PP_4101 15 COG0456 RimI, Acetyltransferases General function prediction only 26991289 Common - transcriptional regulator, AraC family PP_4605 151 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26990097 Common - gluconate dehydrogenase cytochrome c subunit, putative PP_3382 74 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26987985 Common - group II intron-encoding maturase PP_1250 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26988931 Common - hypothetical protein PP_2207 199 COG0628 PerM, Predicted permease General function prediction only 26987601 Common - RNA polymerase sigma-70 factor, putative PP_0865 108 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988600 Common tpm thiopurine S-methyltransferase PP_1870 33 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 26991445 Common - histone deacetylase family protein PP_4764 162 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 26989355 Common - cellulose synthase regulator protein PP_2636 21 None None None 26990975 Common - transporter, putative PP_4284 139 COG2252 COG2252, Permeases General function prediction only 26991394 Common rbfA ribosome-binding factor A PP_4711 181 COG0858 RbfA, Ribosome-binding factor A Translation, ribosomal structure and biogenesis 26989206 Common - hypothetical protein PP_2483 99 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 26991628 Common - hypothetical protein PP_4950 43 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 26991295 Common - RNA polymerase sigma factor PP_4611 40 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988545 Common pyrF orotidine 5'-phosphate decarboxylase PP_1815 167 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 26991636 Common - hypothetical protein PP_4958 41 COG1451 COG1451, Predicted metal-dependent hydrolase General function prediction only 26989237 Common - hypothetical protein PP_2514 56 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 26988751 Nonpathogen - hypothetical protein PP_2026 1 None None None 26989842 Common - CoA-transferase, subunit B, putative PP_3123 102 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 26989266 Common - hypothetical protein PP_2546 10 None None None 26990706 Common crcB crcB protein PP_4001 126 COG0239 CrcB, Integral membrane protein possibly involved in chromosome condensation Cell division and chromosome partitioning 26988794 Common - multidrug efflux MFS outer membrane protein, putative PP_2069 108 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26990275 Common - hypothetical protein PP_3563 61 COG2340 COG2340, Uncharacterized protein with SCP/PR1 domains Function unknown 26991798 Common - oxidoreductase, GMC family PP_5122 78 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26990787 Common - ISPpu15, transposase Orf2 PP_4091 66 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989980 Common - metallothionein, putative PP_3262 6 None None None 26988564 Common - ankyrin domain protein PP_1834 106 COG0666 Arp, FOG: Ankyrin repeat General function prediction only 26991408 Common dapB dihydrodipicolinate reductase PP_4725 217 COG0289 DapB, Dihydrodipicolinate reductase Amino acid transport and metabolism 26990578 Common - hypothetical protein PP_3873 6 None None None 26987666 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B PP_0930 213 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 26987782 Common xcpQ type II secretion pathway protein XcpQ PP_1046 141 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 26988214 Common - betaine aldehyde dehydrogenase, putative PP_1481 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987028 Common mutY A/G specific adenine glycosylase PP_0286 231 COG1194 MutY, A/G-specific DNA glycosylase DNA replication, recombination, and repair 26988020 Common algK alginate biosynthesis regulator AlgK PP_1285 7 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26991274 Common - hypothetical protein PP_4590 35 COG3100 COG3100, Uncharacterized protein conserved in bacteria Function unknown 26988484 Common - hypothetical protein PP_1753 26 COG2962 RarD, Predicted permeases General function prediction only 26990540 Common - sensory box histidine kinase PP_3835 218 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26988005 Common - transcriptional regulator, LysR family PP_1270 92 COG0583 LysR, Transcriptional regulator Transcription 26991878 Common - hypothetical protein PP_5202 48 COG3027 COG3027, Uncharacterized protein conserved in bacteria Function unknown 26990594 Common - phage integrase, putative PP_3889 100 COG0582 XerC, Integrase DNA replication, recombination, and repair 26988332 Common ompH outer membrane protein OmpH PP_1600 24 COG2825 HlpA, Outer membrane protein Cell envelope biogenesis, outer membrane 26991535 Common - DNA-binding transcriptional activator PP_4855 11 None None None 26989925 Common - hypothetical protein PP_3206 68 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26989433 Common - sensor histidine kinase PP_2714 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991252 Common - hypothetical protein PP_4568 32 None None None 26991912 Common - hypothetical protein PP_5236 5 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26986894 Common - hypothetical protein PP_0149 11 None None None 26990878 Common sucC succinyl-CoA synthetase subunit beta PP_4186 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 26991305 Common hmgA homogentisate 1,2-dioxygenase PP_4621 46 COG3508 HmgA, Homogentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26988395 Common - hypothetical protein PP_1663 19 None None None 26988942 Common - ISPpu8, transposase PP_2218 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 26990549 Common - D-aminopeptidase putative PP_3844 49 COG3191 DmpA, L-aminopeptidase/D-esterase Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26987881 Common hepA ATP-dependent helicase HepA PP_1145 117 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 26989348 Common - hypothetical protein PP_2629 3 None None None 26988268 Common - hypothetical protein PP_1536 3 None None None 26990752 Common - alpha-amylase family protein PP_4051 155 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 26990525 Common - group II intron-encoding maturase PP_3820 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26989419 Common - AhpC/TSA family protein PP_2700 81 COG0678 AHP1, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 26987855 Common - hypothetical protein PP_1119 86 COG3012 COG3012, Uncharacterized protein conserved in bacteria Function unknown 26990789 Common - hypothetical protein PP_4094 4 None None None 26991577 Common - YjeF-related protein PP_4899 222 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 26989716 Common - transcriptional regulator, LysR family PP_2997 131 COG0583 LysR, Transcriptional regulator Transcription 26988319 Common - Na+/H+ antiporter PP_1587 91 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 26989599 Common - transcriptional regulator, TetR family PP_2880 61 COG1309 AcrR, Transcriptional regulator Transcription 26987160 Common - hypothetical protein PP_0419 1 None None None 26989330 Nonpathogen - hypothetical protein PP_2611 1 None None None 26987980 Common - hypothetical protein PP_1245 8 COG4520 LipA, Surface antigen Cell envelope biogenesis, outer membrane 26989475 Nonpathogen - hypothetical protein PP_2756 1 None None None 26989282 Common - hypothetical protein PP_2562 4 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26991934 Common - aldehyde dehydrogenase family protein PP_5258 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26989723 Nonpathogen - hypothetical protein PP_3004 1 None None None 26986749 Common gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA PP_0004 191 COG0445 GidA, NAD/FAD-utilizing enzyme apparently involved in cell division Cell division and chromosome partitioning 26986773 Common - hypothetical protein PP_0028 1 None None None 26989148 Common - transcriptional regulator, AraC family PP_2425 126 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26988864 Common - hypothetical protein PP_2140 3 None None None 26987032 Common hisH imidazole glycerol phosphate synthase subunit HisH PP_0290 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 26988380 Common - hypothetical protein PP_1648 1 None None None 26990367 Common - aromatic compound-specific porin, putative PP_3656 8 None None None 26987421 Common - hypothetical protein PP_0685 1 None None None 26989762 Common - hypothetical protein PP_3043 7 None None None 26991259 Common - urea amidolyase-related protein PP_4575 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 26989372 Common - transcriptional regulator, Cro/CI family PP_2653 31 COG1396 HipB, Predicted transcriptional regulators Transcription 26990070 Common - beta-ketothiolase PP_3355 166 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26991613 Common - lipid/phospholipid ABC efflux transporter, permease and ATP-binding protein, putative PP_4935 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26986996 Common - conserved hypothetical protein TIGR00051 PP_0254 27 COG0824 FcbC, Predicted thioesterase General function prediction only 26991698 Common - amino acid ABC transporter, ATP-binding protein PP_5022 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26991533 Common - hypothetical protein PP_4853 102 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26988234 Common - OmpA family protein PP_1502 171 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26991432 Common - amino acid ABC transporter, ATP-binding protein PP_4751 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26987433 Common - acetyltransferase, GNAT family PP_0697 196 COG0456 RimI, Acetyltransferases General function prediction only 26987692 Common - phosphatase, YrbI family PP_0956 104 COG1778 COG1778, Low specificity phosphatase (HAD superfamily) General function prediction only 26988018 Common - alginate-C5-mannuronan-epimerase AlgG, putative PP_1283 8 None None None 26989339 Common - hypothetical protein PP_2620 44 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 26989379 Nonpathogen - hypothetical protein PP_2660 1 COG3177 COG3177, Uncharacterized conserved protein Function unknown 26986909 Common - GGDEF domain protein PP_0165 165 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 26989555 Common - fumarylacetoacetate hydrolase family protein PP_2836 35 COG3970 COG3970, Fumarylacetoacetate (FAA) hydrolase family protein General function prediction only 26990170 Common mobA molybdopterin-guanine dinucleotide biosynthesis protein A PP_3457 132 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 26991697 Common - methyl-accepting chemotaxis transducer PP_5021 142 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26991244 Common - ribonuclease BN, putative PP_4560 109 COG1295 Rbn, Predicted membrane protein Function unknown 26989615 Common - hypothetical protein PP_2896 4 None None None 26990920 Common - hypothetical protein PP_4228 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 26991994 Common ubiA 4-hydroxybenzoate octaprenyltransferase PP_5318 183 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 26989277 Common - sensory box protein PP_2557 180 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26991142 Common - nopaline dehydrogenase, putative PP_4456 104 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 26990746 Common - hypothetical protein PP_4045 13 COG4104 COG4104, Uncharacterized conserved protein Function unknown 26988831 Common - ammonium transporter, putative PP_2106 194 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 26989210 Common - aldehyde dehydrogenase family protein PP_2487 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987536 Common - hypothetical protein PP_0800 2 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 26987062 Common - methyl-accepting chemotaxis transducer PP_0320 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26988781 Common dctM C4-dicarboxylate transport protein PP_2056 159 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 26992050 Common - choline/carnitine/betaine transporter family protein PP_5374 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 26988301 Common - hypothetical protein PP_1569 3 None None None 26990563 Common - tail fiber protein, putative PP_3858 2 None None None 26987713 Common valS valyl-tRNA synthetase PP_0977 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26991304 Common - fumarylacetoacetase PP_4620 62 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 26988553 Common folE GTP cyclohydrolase I PP_1823 177 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 26988648 Common - hypothetical protein PP_1920 12 None None None 26988099 Common sbcB exonuclease I PP_1365 51 COG2925 SbcB, Exonuclease I DNA replication, recombination, and repair 26988115 Common pcaC 4-carboxymuconolactone decarboxylase PP_1381 90 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 26990077 Common - transcriptional regulator, AsnC family PP_3362 131 COG1522 Lrp, Transcriptional regulators Transcription 26986915 Common - ABC transporter, ATP-binding protein PP_0171 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 26989035 Common - hydrolase, TatD family PP_2311 226 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 26991670 Common gshB glutathione synthetase PP_4993 119 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 26991766 Common - hypothetical protein PP_5090 40 COG3087 FtsN, Cell division protein Cell division and chromosome partitioning 26989341 Common - hypothetical protein PP_2622 10 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 26990510 Common - hypothetical protein PP_3805 18 None None None 26989579 Common - nicotinamide mononucleotide transporter, putative PP_2860 52 COG3201 PnuC, Nicotinamide mononucleotide transporter Coenzyme metabolism 26989370 Common - major facilitator family transporter PP_2651 203 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26989027 Common hupB DNA-binding protein HU-beta PP_2303 210 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 26990652 Common - isoquinoline 1-oxidoreductase, putative PP_3947 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 26989205 Common - molybdenum cofactor biosynthesis protein A, putative PP_2482 197 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 26989742 Common - amino acid efflux protein, putative PP_3023 93 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26986849 Common - cytochrome c oxidase, subunit I PP_0104 174 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 26987889 Common - lipoprotein, putative PP_1153 1 None None None 26987873 Common braG branched-chain amino acid ABC transporter, ATP-binding protein PP_1137 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26991589 Common - hypothetical protein PP_4911 14 COG3009 COG3009, Uncharacterized protein conserved in bacteria Function unknown 26987814 Common - ABC transporter, ATP-binding protein, putative PP_1078 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26991114 Common - amino acid ABC transporter, permease protein PP_4426 174 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26990813 Common nuoA NADH dehydrogenase subunit A PP_4119 163 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 26988420 Common - transcriptional regulator, LysR family PP_1688 160 COG0583 LysR, Transcriptional regulator Transcription 26992065 Common - hypothetical protein PP_5389 41 COG2020 STE14, Putative protein-S-isoprenylcysteine methyltransferase Posttranslational modification, protein turnover, chaperones 26986976 Common tauA taurine ABC transporter, periplasmic taurine-binding protein PP_0233 88 COG4521 TauA, ABC-type taurine transport system, periplasmic component Inorganic ion transport and metabolism 26990674 Common - response regulator PP_3969 158 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26988459 Common - transcriptional regulator, GntR family PP_1727 114 COG2188 PhnF, Transcriptional regulators Transcription 26989511 Common - hypothetical protein PP_2792 1 None None None 26991484 Common - lipoprotein, rare lipoprotein A family PP_4804 137 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 26991781 Common - sulfur carrier protein ThiS PP_5105 75 COG2104 ThiS, Sulfur transfer protein involved in thiamine biosynthesis Coenzyme metabolism 26986869 Common - GTPase EngB PP_0124 177 COG0218 COG0218, Predicted GTPase General function prediction only 26986753 Common rnpA ribonuclease P PP_0008 73 COG0594 RnpA, RNase P protein component Translation, ribosomal structure and biogenesis 161378127 Common - hypothetical protein PP_3450 7 None None None 26990958 Common recR recombination protein RecR PP_4267 204 COG0353 RecR, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 26987949 Common - hypothetical protein PP_1214 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 26987457 Common - 50S ribosomal protein L25/general stress protein Ctc PP_0721 190 COG1825 RplY, Ribosomal protein L25 (general stress protein Ctc) Translation, ribosomal structure and biogenesis 26987897 Common - glutathione S-transferase family protein PP_1162 103 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26988870 Common - helicase, SNF2/RAD54 family PP_2146 123 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 26991998 Common - metal ion transporter, putative PP_5322 215 COG1253 TlyC, Hemolysins and related proteins containing CBS domains General function prediction only 26990224 Common - hypothetical protein PP_3512 41 COG4125 COG4125, Predicted membrane protein Function unknown 26988408 Common cobC threonine-phosphate decarboxylase PP_1676 80 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 26990023 Common - membrane protein, TerC family PP_3305 93 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 26987755 Common oprB-1 porin B PP_1019 21 COG3659 OprB, Carbohydrate-selective porin Cell envelope biogenesis, outer membrane 26992037 Common - CobW/P47K family protein PP_5361 128 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 26990214 Common - ISPpu10, transposase PP_3502 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989862 Common - transcriptional regulator, LysR family PP_3143 176 COG0583 LysR, Transcriptional regulator Transcription 26990206 Common - hypothetical protein PP_3494 1 None None None 26989871 Common - transcriptional regulator, LysR family PP_3152 191 COG0583 LysR, Transcriptional regulator Transcription 26987615 Common dppD dipeptide ABC transporter, ATP-binding protein PP_0879 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 26987150 Common - sensory box histidine kinase PP_0409 173 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 26991810 Common - hypothetical protein PP_5134 18 COG1160 COG1160, Predicted GTPases General function prediction only 26987294 Common - acetoin catabolism protein PP_0556 15 COG3199 COG3199, Uncharacterized conserved protein Function unknown 26989818 Common - hypothetical protein PP_3099 50 COG3517 COG3517, Uncharacterized protein conserved in bacteria Function unknown 26986874 Common - GGDEF domain protein PP_0129 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26990723 Common - acetyltransferase, GNAT family PP_4018 102 COG2153 ElaA, Predicted acyltransferase General function prediction only 26991261 Common - hypothetical protein PP_4577 100 COG1540 COG1540, Uncharacterized proteins, homologs of lactam utilization protein B General function prediction only 26991720 Common - GTP-binding protein TypA/BipA PP_5044 249 COG1217 TypA, Predicted membrane GTPase involved in stress response Signal transduction mechanisms 26987834 Common - ATP-binding protein, Mrp/Nbp35 family PP_1098 230 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26989733 Common - hypothetical protein PP_3014 1 None None None 26987964 Common - amino acid transporter, putative PP_1229 186 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26989498 Nonpathogen - beta-ketoacyl synthase, putative PP_2779 1 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26988853 Common - hypothetical protein PP_2129 64 COG3217 COG3217, Uncharacterized Fe-S protein General function prediction only 26989170 Common - hypothetical protein PP_2447 14 None None None 26988452 Common - alcohol dehydrogenase, zinc-containing PP_1720 169 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26988641 Common plsX fatty acid/phospholipid synthesis protein PP_1912 177 COG0416 PlsX, Fatty acid/phospholipid biosynthesis enzyme Lipid metabolism 26987749 Common - sensor histidine kinase PP_1013 175 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987102 Common modR molybdate transport regulator PP_0360 52 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 26987200 Common rplV 50S ribosomal protein L22 PP_0459 224 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 26989747 Nonpathogen - hypothetical protein PP_3028 1 None None None 26990683 Nonpathogen - hypothetical protein PP_3978 1 None None None 26988711 Common leuC isopropylmalate isomerase large subunit PP_1985 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 26988991 Nonpathogen - phage single-stranded DNA-binding protein, putative PP_2267 2 None None None 26988614 Common - hypothetical protein PP_1884 2 None None None 26988788 Nonpathogen - hypothetical protein PP_2063 1 None None None 26989735 Common - lipopolysaccharide core biosynthesis protein, putative PP_3016 8 None None None 26989226 Common - 3-oxoacyl-(acyl-carrier-protein) reductase, putative PP_2503 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26991518 Common oprC outer membrane copper receptor OprC PP_4838 98 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26991039 Common - hypothetical protein PP_4349 3 None None None 26988727 Common - oxidoreductase PP_2002 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26987115 Common - Pmp3 family protein PP_0373 29 COG0401 COG0401, Uncharacterized homolog of Blt101 Function unknown 26988182 Common - surface colonization protein, putative PP_1449 45 None None None 26988907 Common - formate dehydrogenase subunit gamma PP_2183 147 COG1905 NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit Energy production and conversion 26986778 Common - sugar transferase, putative PP_0033 63 COG1807 ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family Cell envelope biogenesis, outer membrane 26991717 Common glgP glycogen phosphorylase PP_5041 142 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 26988527 Common - HlyD family secretion protein PP_1797 130 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26989971 Common - hypothetical protein PP_3253 59 COG2170 COG2170, Uncharacterized conserved protein Function unknown 26989361 Common - transcriptional regulator, GntR family PP_2642 172 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26986839 Common - hydrolase, haloacid dehalogenase-like family PP_0094 163 COG0546 Gph, Predicted phosphatases General function prediction only 26990995 Common - cation transporter, VIC family PP_4304 95 COG1226 Kch, Kef-type K+ transport systems, predicted NAD-binding component Inorganic ion transport and metabolism 26990922 Common - hypothetical protein PP_4230 55 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 26988429 Common - transcriptional regulator, GntR family PP_1697 117 COG2188 PhnF, Transcriptional regulators Transcription 26989612 Common - hypothetical protein PP_2893 103 COG2911 COG2911, Uncharacterized protein conserved in bacteria Function unknown 26986936 Common fkl peptidyl-prolyl cis-trans isomerase FklB PP_0192 129 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 26987479 Common - hypothetical protein PP_0743 107 COG1090 COG1090, Predicted nucleoside-diphosphate sugar epimerase General function prediction only 26989073 Common - CBS domain protein PP_2349 89 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 26991061 Common fleS sensory box histidine kinase FleS PP_4372 184 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990522 Common - polyamine ABC transporter, ATP-binding protein PP_3817 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26987789 Common xcpY type II secretion pathway protein XcpY PP_1053 2 None None None 26989881 Common benB benzoate dioxygenase, beta subunit PP_3162 27 COG5517 COG5517, Small subunit of phenylpropionate dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26989804 Common - transmembrane sensor, putative PP_3085 43 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26986830 Common - hypothetical protein PP_0085 9 COG4575 ElaB, Uncharacterized conserved protein Function unknown 26988861 Common fadA 3-ketoacyl-CoA thiolase PP_2137 176 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26989250 Nonpathogen - hypothetical protein PP_2530 1 None None None 26987185 Common rplA 50S ribosomal protein L1 PP_0444 245 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 26987790 Common xcpZ type II secretion pathway protein XcpZ PP_1054 1 None None None 26987338 Common - membrane protein, MviN family PP_0601 197 COG0728 MviN, Uncharacterized membrane protein, putative virulence factor General function prediction only 26991710 Common - hypothetical protein PP_5034 41 COG3758 COG3758, Uncharacterized protein conserved in bacteria Function unknown 26988953 Common - putative monovalent cation/H+ antiporter subunit C PP_2229 92 COG1006 MnhC, Multisubunit Na+/H+ antiporter, MnhC subunit Inorganic ion transport and metabolism 26991230 Common hrpA ATP-dependent helicase HrpA PP_4546 131 COG1643 HrpA, HrpA-like helicases DNA replication, recombination, and repair 26988413 Common cobS cobalamin synthase PP_1681 15 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 26989085 Common csuC type 1 pili usher pathway chaperone CsuC PP_2361 27 COG3121 FimC, P pilus assembly protein, chaperone PapD Cell motility and secretion / Intracellular trafficking and secretion 26989523 Common - hydrolase, alpha/beta fold family PP_2804 131 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26988883 Common - copper-binding protein, plastocyanin/azurin family PP_2159 27 COG4454 COG4454, Uncharacterized copper-binding protein Inorganic ion transport and metabolism 26990049 Common - cytochrome c-type protein PP_3332 41 COG3245 CycB, Cytochrome c5 Energy production and conversion 26987374 Common - ISPpu15, transposase Orf1 PP_0638 49 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988312 Common - hypothetical protein PP_1580 6 None None None 26987058 Common - oxidoreductase, FAD-binding, putative PP_0316 158 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26991215 Common - hypothetical protein PP_4530 38 COG2929 COG2929, Uncharacterized protein conserved in bacteria Function unknown 26986942 Common - transporter, LysE family PP_0198 103 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26989791 Common - ecotin precursor PP_3072 23 COG4574 Eco, Serine protease inhibitor ecotin General function prediction only 26991728 Common - RNA methyltransferase, TrmH family, group 2 PP_5052 162 COG0219 CspR, Predicted rRNA methylase (SpoU class) Translation, ribosomal structure and biogenesis 26989194 Common ihfA integration host factor subunit alpha PP_2471 208 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 26987209 Common rpsH 30S ribosomal protein S8 PP_0468 229 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 26991434 Common - N-methylproline demethylase, putative PP_4753 189 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26988841 Common pdxB erythronate-4-phosphate dehydrogenase PP_2117 225 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 26991268 Common - hypothetical protein PP_4584 27 None None None 161378125 Common - ParA family protein PP_4334 201 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26990177 Common - hypothetical protein PP_3464 11 None None None 26991073 Common flgH flagellar basal body L-ring protein PP_4384 100 COG2063 FlgH, Flagellar basal body L-ring protein Cell motility and secretion 26989304 Common - aldehyde dehydrogenase family protein PP_2585 188 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26986933 Common hemY hemY protein PP_0189 55 COG3071 HemY, Uncharacterized enzyme of heme biosynthesis Coenzyme metabolism 26991334 Common cioB ubiquinol oxidase subunit II, cyanide insensitive PP_4650 147 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 26989480 Common - ribose ABC transporter, permease protein, putative PP_2761 109 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 26991503 Common purD phosphoribosylamine--glycine ligase PP_4823 232 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 26987229 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_0488 238 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 26987451 Common - outer membrane efflux protein PP_0715 107 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26987131 Common rpsU 30S ribosomal protein S21 PP_0389 90 COG0828 RpsU, Ribosomal protein S21 Translation, ribosomal structure and biogenesis 26991471 Common - ISPpu9, transposase PP_4791 30 None None None 26991806 Common - hypothetical protein PP_5130 7 None None None 26989827 Common - rhs-related protein PP_3108 73 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 26988666 Nonpathogen - hypothetical protein PP_1938 1 None None None 26989405 Common - transglutaminase-like superfamily domain protein PP_2686 93 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 26987205 Common rplN 50S ribosomal protein L14 PP_0464 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 26990807 Common - hypothetical protein PP_4113 17 COG1404 AprE, Subtilisin-like serine proteases Posttranslational modification, protein turnover, chaperones 26989261 Common - transcriptional factor-related protein PP_2541 7 None None None 26987381 Nonpathogen - hypothetical protein PP_0645 1 None None None 26988289 Nonpathogen - hypothetical protein PP_1557 1 None None None 26989961 Common - acetyltransferase, GNAT family PP_3243 28 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 26987051 Common - hypothetical protein PP_0309 10 None None None 26987280 Common - ethanolamine ammonia-lyase small subunit PP_0542 54 COG4302 EutC, Ethanolamine ammonia-lyase, small subunit Amino acid transport and metabolism 26989662 Common - cytochrome c551 peroxidase, putative PP_2943 94 COG1858 MauG, Cytochrome c peroxidase Inorganic ion transport and metabolism 26986975 Common tauB taurine transporter ATP-binding subunit PP_0232 249 COG4525 TauB, ABC-type taurine transport system, ATPase component Inorganic ion transport and metabolism 26987138 Common - hypothetical protein PP_0396 71 COG2718 COG2718, Uncharacterized conserved protein Function unknown 26990117 Common - hypothetical protein PP_3403 146 COG1741 COG1741, Pirin-related protein General function prediction only 26987760 Common eda keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase PP_1024 126 COG0800 Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase Carbohydrate transport and metabolism 26986891 Common - hypothetical protein PP_0146 112 COG0861 TerC, Membrane protein TerC, possibly involved in tellurium resistance Inorganic ion transport and metabolism 26989329 Common - hypothetical protein PP_2610 16 COG4104 COG4104, Uncharacterized conserved protein Function unknown 26989268 Common - sugar MFS transporter, putative PP_2548 124 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26989007 Nonpathogen - tail tubular protein A PP_2283 2 None None None 26990941 Common ccoN-1 cytochrome c oxidase, cbb3-type, subunit I PP_4250 148 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 26990973 Common - aquaporin Z PP_4282 133 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 26989656 Common - integrase, putative PP_2937 29 None None None 26988255 Common - hypothetical protein PP_1523 5 None None None 26987248 Common - hypothetical protein PP_0509 1 None None None 26991227 Common - hypothetical protein PP_4543 81 COG3146 COG3146, Uncharacterized protein conserved in bacteria Function unknown 26987162 Common trpD anthranilate phosphoribosyltransferase PP_0421 217 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 26989568 Common ureG urease accessory protein UreG PP_2849 156 COG0378 HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase Posttranslational modification, protein turnover, chaperones / Transcription 26988948 Common - hypothetical protein PP_2224 1 None None None 26989296 Common - PqiB family protein PP_2577 66 COG3008 PqiB, Paraquat-inducible protein B General function prediction only 26988512 Common - O-acyltransferase, putative PP_1781 63 COG1835 COG1835, Predicted acyltransferases Lipid metabolism 26988059 Common - hypothetical protein PP_1324 120 COG0792 COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase DNA replication, recombination, and repair 26990359 Common - carboxymuconolactone decarboxylase family protein PP_3648 87 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 26989575 Common - hypothetical protein PP_2856 1 COG3188 FimD, P pilus assembly protein, porin PapC Cell motility and secretion / Intracellular trafficking and secretion 26988064 Common ftsL cell division protein FtsL PP_1330 18 COG3116 FtsL, Cell division protein Cell division and chromosome partitioning 26986840 Common - anhydrase, family 3 protein PP_0095 187 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 26989646 Common - hypothetical protein PP_2927 40 COG2519 GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases Translation, ribosomal structure and biogenesis 26990147 Common - hypothetical protein PP_3434 1 None None None 26989789 Common ppiC-1 peptidyl-prolyl cis-trans isomerase C PP_3070 123 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 26989468 Common - branched-chain amino acid ABC transporter, permease protein, putative PP_2749 151 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 26987034 Common hisA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase PP_0292 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 26990599 Common - phage replication protein O, putative PP_3894 4 None None None 26991087 Common - major facilitator family transporter PP_4398 66 COG0738 FucP, Fucose permease Carbohydrate transport and metabolism 26987807 Common - amino acid ABC transporter, periplasmic amino acid-binding protein PP_1071 105 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26988767 Common - hypothetical protein PP_2042 18 None None None 26987519 Nonpathogen - hypothetical protein PP_0783 1 None None None 26987923 Common dctA C4-dicarboxylate transporter DctA PP_1188 162 COG1301 GltP, Na+/H+-dicarboxylate symporters Energy production and conversion 26987090 Common - hypothetical protein PP_0348 1 None None None 26990018 Common - transcriptional regulator, tetR family PP_3300 70 COG1309 AcrR, Transcriptional regulator Transcription 26987125 Common - tryptophan 2-monooxygenase, putative PP_0383 19 COG1231 COG1231, Monoamine oxidase Amino acid transport and metabolism 26988052 Common petA ubiquinol--cytochrome c reductase, iron-sulfur subunit PP_1317 92 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 26990026 Common - oxidoreductase, small subunit, putative PP_3308 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 26990033 Common - hypothetical protein PP_3315 20 None None None 26988876 Common - glycerophosphoryl diester phosphodiesterase, putative PP_2152 153 COG0584 UgpQ, Glycerophosphoryl diester phosphodiesterase Energy production and conversion 26991919 Common - hydrolase, isochorismatase family PP_5243 79 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26989005 Nonpathogen - capsid assembly protein, putative PP_2281 2 None None None 26990596 Common - hypothetical protein PP_3891 8 None None None 26989830 Nonpathogen - hypothetical protein PP_3111 1 None None None 26987699 Common ttg2F toluene-tolerance protein PP_0963 52 COG5007 COG5007, Predicted transcriptional regulator, BolA superfamily Transcription 26988196 Common rimM 16S rRNA-processing protein PP_1463 188 COG0806 RimM, RimM protein, required for 16S rRNA processing Translation, ribosomal structure and biogenesis 26988817 Common nasA nitrate transporter PP_2092 95 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 26990113 Common - curli fiber surface-exposed nucleator CsgB, putative PP_3398 17 None None None 26987514 Common - glycosyl transferase, group 1 family protein PP_0778 184 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26988351 Common truD tRNA pseudouridine synthase D PP_1619 81 COG0585 COG0585, Uncharacterized conserved protein Function unknown 26986920 Common - efflux transporter, permease protein, putative PP_0176 48 COG1289 COG1289, Predicted membrane protein Function unknown 26991143 Common - nopaline dehydrogenase, putative PP_4457 111 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26990258 Common - sensory box histidine kinase/response regulator PP_3546 206 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26991703 Common dtD D-tyrosyl-tRNA deacylase PP_5027 139 COG1490 Dtd, D-Tyr-tRNAtyr deacylase Translation, ribosomal structure and biogenesis 26991070 Common flgK flagellar hook-associated protein FlgK PP_4381 122 COG1256 FlgK, Flagellar hook-associated protein Cell motility and secretion 26987596 Common - sulfite reductase, flavoprotein component, putative PP_0860 102 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 26987725 Common gcvH glycine cleavage system protein H PP_0989 187 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 26989941 Common - ABC transporter, periplasmic binding protein PP_3223 180 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 26991644 Common - transcriptional regulator, ArsR family PP_4966 87 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26991885 Common - flagellar basal body-associated protein FliL-like protein PP_5209 19 COG1580 FliL, Flagellar basal body-associated protein Cell motility and secretion 26990825 Common nuoN NADH dehydrogenase subunit N PP_4131 210 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 26990568 Common - phage tail protein, putative PP_3863 22 COG4379 COG4379, Mu-like prophage tail protein gpP General function prediction only 26991416 Common smpB SsrA-binding protein PP_4733 216 COG0691 SmpB, tmRNA-binding protein Posttranslational modification, protein turnover, chaperones 26987233 Common selA selenocysteine synthase PP_0493 69 COG1921 SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] Amino acid transport and metabolism 26987462 Common - transferase, putative PP_0726 114 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 26991355 Common - hypothetical protein PP_4671 16 None None None 26990561 Nonpathogen - hypothetical protein PP_3856 1 None None None 26987976 Common - hypothetical protein PP_1241 35 COG3636 COG3636, Predicted transcriptional regulator Transcription 26988208 Common - CAIB/BAIF family protein PP_1475 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 26989534 Common - hypothetical protein PP_2815 14 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 26989526 Common - hypothetical protein PP_2807 16 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 26986790 Common - cobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC family PP_0045 84 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26991443 Common tesB acyl-CoA thioesterase II PP_4762 77 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 26988923 Common - hypothetical protein PP_2199 102 COG1485 COG1485, Predicted ATPase General function prediction only 26987224 Common uvrA excinuclease ABC subunit A PP_0483 244 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 26988412 Common - alpha-ribazole-5'-phosphate phosphatase PP_1680 143 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 26991772 Common - YGGT family protein PP_5096 119 COG0762 COG0762, Predicted integral membrane protein Function unknown 26988598 Common - ATP-dependent RNA helicase, DEAD box family PP_1868 228 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 26989472 Common - branched-chain amino acid ABC transporter, ATP-binding protein, putative PP_2753 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26989432 Common - DNA-binding response regulator PP_2713 218 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26990271 Common - amino acid transporter permease protein, putative PP_3559 130 COG4176 ProW, ABC-type proline/glycine betaine transport system, permease component Amino acid transport and metabolism 161378130 Common - protocatechuate 4,5-dioxygenase, putative PP_2518 30 COG3384 COG3384, Uncharacterized conserved protein Function unknown 26989443 Common - hypothetical protein PP_2724 2 None None None 26990059 Common nikC nickel transporter permease NikC PP_3344 220 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26988588 Common efp elongation factor P PP_1858 216 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 26990864 Common - hypothetical protein PP_4172 14 COG2984 COG2984, ABC-type uncharacterized transport system, periplasmic component General function prediction only 26987936 Common - hypothetical protein PP_1201 19 COG3946 VirJ, Type IV secretory pathway, VirJ component Intracellular trafficking and secretion 26988447 Common - hypothetical protein PP_1715 24 COG3339 COG3339, Uncharacterized conserved protein Function unknown 26990384 Nonpathogen - hypothetical protein PP_3675 1 None None None 26987639 Common - hypothetical protein PP_0903 9 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26991586 Common psd phosphatidylserine decarboxylase PP_4908 98 COG0688 Psd, Phosphatidylserine decarboxylase Lipid metabolism 26987797 Common - ATP-dependent DNA helicase lhr, putative PP_1061 230 COG1201 Lhr, Lhr-like helicases General function prediction only 26988362 Common recX recombination regulator RecX PP_1630 85 COG2137 OraA, Uncharacterized protein conserved in bacteria General function prediction only 26991019 Common - FlhB domain protein PP_4329 9 COG2257 COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB Function unknown 26988292 Nonpathogen - hypothetical protein PP_1560 1 None None None 26990938 Common - exonuclease PP_4247 17 COG5018 KapD, Inhibitor of the KinA pathway to sporulation, predicted exonuclease General function prediction only 26986967 Common - monooxygenase, DszC family PP_0224 66 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26990376 Common - transcriptional regulator, AraC family PP_3665 108 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26989778 Common gpFI pyocin R2_PP, tail sheath protein PP_3059 51 COG3497 COG3497, Phage tail sheath protein FI General function prediction only 26988701 Common - drug resistance transporter, EmrB/QacA family PP_1975 177 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991733 Common - peptidase, M23/M37 family PP_5057 187 COG4942 COG4942, Membrane-bound metallopeptidase Cell division and chromosome partitioning 26988041 Common - Pyocin S-type Killer domain protein PP_1306 8 None None None 26988748 Common - glutathione S-transferase family protein PP_2023 35 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26988323 Common rpsB 30S ribosomal protein S2 PP_1591 228 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 26988349 Common - esterase, putative PP_1617 102 COG0627 COG0627, Predicted esterase General function prediction only 26990288 Common - transmembrane sensor, putative PP_3576 37 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26986852 Common - hypothetical protein PP_0107 50 COG3346 COG3346, Uncharacterized conserved protein Function unknown 26990455 Common - hypothetical protein PP_3749 1 None None None 26988245 Common - hypothetical protein PP_1513 50 None None None 26989896 Common - hypothetical protein PP_3177 38 COG3835 CdaR, Sugar diacid utilization regulator Transcription / Signal transduction mechanisms 26990534 Common modB molybdate ABC transporter, permease protein PP_3829 209 COG4149 ModC, ABC-type molybdate transport system, permease component Inorganic ion transport and metabolism 26987800 Common - hydrolase, alpha/beta fold family PP_1064 106 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26986987 Common - hypothetical protein PP_0244 82 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 26990066 Nonpathogen - hypothetical protein PP_3351 1 None None None 26991424 Common hsdM type I restriction-modification system, M subunit PP_4741 161 COG0286 HsdM, Type I restriction-modification system methyltransferase subunit Defense mechanisms 26991155 Common gmk-1 guanylate kinase PP_4469 60 COG3709 COG3709, Uncharacterized component of phosphonate metabolism Inorganic ion transport and metabolism 26989672 Common - alcohol dehydrogenase, zinc-containing PP_2953 153 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26989679 Common - transcriptional regulator, AraC family PP_2960 121 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26990838 Common mltD membrane-bound lytic murein transglycosylase D PP_4145 151 COG1388 LytE, FOG: LysM repeat Cell envelope biogenesis, outer membrane 26988242 Common - carboxyvinyl-carboxyphosphonate phosphorylmutase, putative PP_1510 83 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 26988166 Common rnc ribonuclease III PP_1433 217 COG0571 Rnc, dsRNA-specific ribonuclease Transcription 26991623 Common - hypothetical protein PP_4945 85 COG2961 ComJ, Protein involved in catabolism of external DNA General function prediction only 26989933 Common - hypothetical protein PP_3214 16 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 26991376 Common - hypothetical protein PP_4692 235 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26988365 Common - hypothetical protein PP_1633 1 None None None 26987971 Common - glycine cleavage system transcriptional repressor, putative PP_1236 27 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 26987356 Common - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein PP_0619 113 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26987577 Common - rrf2 family protein PP_0841 114 COG1959 COG1959, Predicted transcriptional regulator Transcription 26991856 Common potF-1 putrescine ABC transporter, periplasmic putrescine-binding protein PP_5180 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26988602 Common - aminotransferase AlaT PP_1872 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26988848 Common - glycosyl transferase, putative PP_2124 90 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26990052 Common - hypothetical protein PP_3337 1 None None None 26990856 Common - hydrolase, alpha/beta fold family PP_4164 141 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26988282 Common - transcriptional regulator, Cro/CI family PP_1550 6 None None None 26987683 Common - hypothetical protein PP_0947 81 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 26990248 Nonpathogen - hypothetical protein PP_3536 1 None None None 26988439 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein PP_1707 217 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 26990913 Common - non-ribosomal peptide synthetase PP_4221 215 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 26990241 Common - monooxygenase, putative PP_3529 73 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26992003 Common pstA phosphate ABC transporter, permease protein PP_5327 219 COG4985 COG4985, ABC-type phosphate transport system, auxiliary component Inorganic ion transport and metabolism 26990281 Common - quinate dehydrogenase (pyrroloquinoline-quinone), putative PP_3569 58 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 26992093 Common atpE F0F1 ATP synthase subunit C PP_5418 65 COG0636 AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K Energy production and conversion 26987393 Common - amino acid ABC transporter, periplasmic amino acid-binding protein, putative PP_0657 170 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26988129 Common - transcriptional regulator, AraC family PP_1395 127 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26988671 Common - aminomethyltransferase, putative PP_1944 60 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 26988590 Common - transcriptional regulator, MarR family PP_1860 124 COG1846 MarR, Transcriptional regulators Transcription 26989548 Common - transcriptional regulator, GntR family PP_2829 51 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26990002 Common - enoyl-CoA hydratase-isomerase PP_3284 188 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26988190 Common purT phosphoribosylglycinamide formyltransferase 2 PP_1457 206 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 26988652 Common - phosphinothricin N-acetyltransferase, putative PP_1924 106 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 26987553 Common - aminotransferase PP_0817 239 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26988530 Common rmd oxidoreductase Rmd PP_1800 227 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 26986816 Common - hypothetical protein PP_0071 1 None None None 26989051 Common cysB transcriptional regulator CysB PP_2327 188 COG0583 LysR, Transcriptional regulator Transcription 26990503 Common - hypothetical protein PP_3798 4 None None None 26991455 Common - cation efflux family protein PP_4774 190 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 26987341 Common lspA lipoprotein signal peptidase PP_0604 146 COG0597 LspA, Lipoprotein signal peptidase Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26990497 Common - hypothetical protein PP_3792 1 None None None 26990902 Common - ABC export system, permease/ATP-binding protein, putative PP_4210 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 26991907 Common - hydrolase, haloacid dehalogenase-like family PP_5231 145 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 26990063 Common - GGDEF domain protein PP_3348 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26991329 Common mscL large-conductance mechanosensitive channel PP_4645 143 COG1970 MscL, Large-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26991134 Common - hypothetical protein PP_4448 84 COG0433 COG0433, Predicted ATPase General function prediction only 26987522 Common trxB thioredoxin reductase PP_0786 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 26989995 Common - phenylacetic acid degradation protein PaaB, putative PP_3277 38 COG3460 COG3460, Uncharacterized enzyme of phenylacetate metabolism Secondary metabolites biosynthesis, transport, and catabolism 26990332 Common - isoquinoline 1-oxidoreductase, alpha subunit, putative PP_3621 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 26989319 Common - putative FAD-binding dehydrogenase PP_2600 66 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 26988802 Common lysA-1 diaminopimelate decarboxylase PP_2077 218 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 26992017 Common - ABC transporter, periplasmic polyamine-binding protein, putative PP_5341 133 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26986880 Nonpathogen - hypothetical protein PP_0135 1 None None None 26987264 Common - ISPpu10, transposase PP_0526 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987443 Common - hypothetical protein PP_0707 223 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26990660 Common - transporter, putative PP_3955 132 COG4666 COG4666, TRAP-type uncharacterized transport system, fused permease components General function prediction only 26988465 Common minC septum formation inhibitor PP_1734 87 COG0850 MinC, Septum formation inhibitor Cell division and chromosome partitioning 26991015 Common ccmC heme ABC export system, permease protein CcmC PP_4325 120 COG0755 CcmC, ABC-type transport system involved in cytochrome c biogenesis, permease component Posttranslational modification, protein turnover, chaperones 26990169 Common - multidrug efflux RND transporter PP_3456 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26987688 Common rpoN RNA polymerase factor sigma-54 PP_0952 145 COG1508 RpoN, DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog Transcription 26991666 Common pilJ type IV pili methyl-accepting chemotaxis transducer PilJ PP_4989 149 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989938 Common - ABC transporter, ATP-binding protein PP_3220 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 26987671 Common mreD rod shape-determining protein MreD PP_0935 64 COG2891 MreD, Cell shape-determining protein Cell envelope biogenesis, outer membrane 26989820 Common - ADP-ribosylglycohydrolase family protein PP_3101 36 COG1397 DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones 26991383 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase PP_4699 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 26986808 Common - lipid A biosynthesis lauroyl acyltransferase PP_0063 114 COG1560 HtrB, Lauroyl/myristoyl acyltransferase Cell envelope biogenesis, outer membrane 26989683 Common tnpA Tn4652, transposase PP_2964 53 COG4644 COG4644, Transposase and inactivated derivatives, TnpA family DNA replication, recombination, and repair 26987472 Common murI glutamate racemase PP_0736 191 COG0796 MurI, Glutamate racemase Cell envelope biogenesis, outer membrane 26990738 Common - transporter, NCS1 nucleoside transporter family PP_4035 73 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 26989156 Common - hypothetical protein PP_2433 7 COG5642 COG5642, Uncharacterized conserved protein Function unknown 26987504 Common - response regulator/TPR domain protein PP_0768 98 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 26988239 Common - hypothetical protein PP_1507 179 COG1214 COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone Posttranslational modification, protein turnover, chaperones 26991524 Common - branched-chain amino acid ABC transporter, ATP-binding protein, putative PP_4844 249 COG4674 COG4674, Uncharacterized ABC-type transport system, ATPase component General function prediction only 26988895 Common - transporter, LysE family PP_2171 117 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26986941 Common - hypothetical protein PP_0197 9 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26987043 Common - hypothetical protein PP_0301 30 COG0824 FcbC, Predicted thioesterase General function prediction only 26989798 Common ppiC-2 peptidyl-prolyl cis-trans isomerase C PP_3079 148 COG0760 SurA, Parvulin-like peptidyl-prolyl isomerase Posttranslational modification, protein turnover, chaperones 26991197 Common - hypothetical protein PP_4512 33 COG2962 RarD, Predicted permeases General function prediction only 26990323 Common - TonB-dependent receptor, putative PP_3612 126 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 26988735 Common - cytochrome b561 PP_2010 74 COG3038 CybB, Cytochrome B561 Energy production and conversion 26989771 Nonpathogen - hypothetical protein PP_3052 1 None None None 26991988 Common - hypothetical protein PP_5312 7 None None None 26990611 Common - hypothetical protein PP_3906 1 None None None 26987700 Common murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase PP_0964 213 COG0766 MurA, UDP-N-acetylglucosamine enolpyruvyl transferase Cell envelope biogenesis, outer membrane 26990829 Nonpathogen - hypothetical protein PP_4135 1 None None None 26990137 Common xcpS-2 type II secretion pathway protein XcpS PP_3424 140 COG1459 PulF, Type II secretory pathway, component PulF Cell motility and secretion / Intracellular trafficking and secretion 26987086 Common waaP lipopolysaccharide core biosynthesis protein WaaP PP_0344 10 None None None 26988082 Common - hypothetical protein PP_1348 150 COG0352 ThiE, Thiamine monophosphate synthase Coenzyme metabolism 26990312 Common - D-galactarate dehydratase, putative PP_3601 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 26990095 Common ptxS transcriptional regulator PtxS PP_3380 126 COG1609 PurR, Transcriptional regulators Transcription 26987919 Common - dienelactone hydrolase family protein PP_1184 89 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 26990433 Common - enoyl-CoA hydratase/isomerase family protein PP_3726 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26990818 Common nuoG NADH dehydrogenase subunit G PP_4124 180 COG1034 NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) Energy production and conversion 26987013 Common gltR-1 DNA-binding response regulator GltR PP_0271 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26990802 Common - transcriptional regulator, LysR family PP_4107 174 COG0583 LysR, Transcriptional regulator Transcription 26989706 Common - hypothetical protein PP_2987 133 COG1733 COG1733, Predicted transcriptional regulators Transcription 26988151 Common - tricarboxylate transport protein TctC, putative PP_1418 73 COG3181 COG3181, Uncharacterized protein conserved in bacteria Function unknown 26988743 Common - BNR domain protein PP_2018 53 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 26989704 Common - hypothetical protein PP_2985 41 COG2320 GrpB, Uncharacterized conserved protein Function unknown 26986916 Common - ABC transporter, permease protein PP_0172 150 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 26989455 Common - hypothetical protein PP_2736 68 COG2907 COG2907, Predicted NAD/FAD-binding protein General function prediction only 26990618 Nonpathogen - hypothetical protein PP_3913 1 None None None 26991779 Common trmB tRNA (guanine-N(7))-methyltransferase PP_5103 177 COG0220 COG0220, Predicted S-adenosylmethionine-dependent methyltransferase General function prediction only 26990153 Common - hypothetical protein PP_3440 3 None None None 26989242 Nonpathogen - hypothetical protein PP_2520 1 None None None 26987327 Common - multidrug resistance transporter, Bcr/CflA family PP_0589 224 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987832 Common - hypothetical protein PP_1096 28 COG4657 RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA Energy production and conversion 26987496 Common - hypothetical protein PP_0760 69 COG2119 COG2119, Predicted membrane protein Function unknown 26991749 Common - conserved hypothetical protein TIGR00156 PP_5073 9 COG3111 COG3111, Uncharacterized conserved protein Function unknown 26991900 Common - hypothetical protein PP_5224 10 COG3313 COG3313, Predicted Fe-S protein General function prediction only 26989857 Common - VirK domain protein PP_3138 21 COG2990 VirK, Uncharacterized protein conserved in bacteria Function unknown 26989617 Nonpathogen - hypothetical protein PP_2898 1 None None None 26990099 Common - hypothetical protein PP_3384 17 None None None 26987546 Common cyoups1 cyoups1 protein PP_0810 1 None None None 26990520 Common - polyamine ABC transporter, permease protein PP_3815 204 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 26990896 Common - transcriptional regulator, Cro/CI family PP_4204 16 COG2944 COG2944, Predicted transcriptional regulator Transcription 26988058 Common gmhA phosphoheptose isomerase PP_1323 122 COG0279 GmhA, Phosphoheptose isomerase Carbohydrate transport and metabolism 26990565 Common - phage FluMu protein gp47 PP_3860 26 COG3299 XkdT, Uncharacterized homolog of phage Mu protein gp47 Function unknown 26987516 Nonpathogen - hypothetical protein PP_0780 1 None None None 26988768 Common - hypothetical protein PP_2043 17 None None None 26988576 Common - group II intron-encoding maturase PP_1846 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26991817 Common thyA thymidylate synthase PP_5141 135 COG0207 ThyA, Thymidylate synthase Nucleotide transport and metabolism 26987629 Common - ThiJ/PfpI family protein PP_0893 138 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 26991162 Common - hypothetical protein PP_4476 1 None None None 26992082 Common - transposition protein, TnsD-related protein PP_5407 17 None None None 26988543 Common - ComEA-related protein PP_1813 91 COG1555 ComEA, DNA uptake protein and related DNA-binding proteins DNA replication, recombination, and repair 26991476 Common holA DNA polymerase III subunit delta PP_4796 140 COG1466 HolA, DNA polymerase III, delta subunit DNA replication, recombination, and repair 26988833 Common - hypothetical protein PP_2108 17 COG3108 COG3108, Uncharacterized protein conserved in bacteria Function unknown 26991169 Common - basic amino acid ABC transporter, ATP-binding protein PP_4483 249 COG4598 HisP, ABC-type histidine transport system, ATPase component Amino acid transport and metabolism 26989175 Common - hypothetical protein PP_2452 1 None None None 26990757 Common - hypothetical protein PP_4056 59 COG3568 ElsH, Metal-dependent hydrolase General function prediction only 26991208 Common - agmatinase, putative PP_4523 160 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 26987941 Common oprD porin D PP_1206 13 None None None 26988109 Common pcaR pca regulon regulatory protein PP_1375 119 COG1414 IclR, Transcriptional regulator Transcription 26992072 Common - ISPpu14, transposase Orf2 PP_5397 40 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990393 Common - hypothetical protein PP_3684 1 None None None 26991051 Common - hypothetical protein PP_4362 6 COG2198 ArcB, FOG: HPt domain Signal transduction mechanisms 26987607 Common - glycine betaine/carnitine/choline ABC transporter, permease protein, putative PP_0871 173 COG1174 OpuBB, ABC-type proline/glycine betaine transport systems, permease component Amino acid transport and metabolism 26991172 Common - basic amino acid ABC transporter, periplasmic basic amino acid-binding protein PP_4486 172 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26990013 Common - YeeE/YedE family protein PP_3295 69 COG2391 COG2391, Predicted transporter component General function prediction only 26988108 Common - hypothetical protein PP_1374 1 None None None 26987622 Common - hypothetical protein PP_0886 22 COG3471 COG3471, Predicted periplasmic/secreted protein Function unknown 26991968 Common crc catabolite repression control protein PP_5292 187 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 26990847 Common - hypothetical protein PP_4154 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 26987315 Common - hypothetical protein PP_0577 2 None None None 26991366 Common - lipoprotein, putative PP_4682 8 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 26987041 Common - hypothetical protein PP_0299 2 None None None 26990643 Nonpathogen - hypothetical protein PP_3938 1 None None None 26991352 Common - transcriptional regulator, LysR family PP_4668 119 COG0583 LysR, Transcriptional regulator Transcription 26987352 Common - branched-chain amino acid ABC transporter, ATP-binding protein PP_0615 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26990463 Common - response regulator/sensor histidine kinase PP_3758 219 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991264 Common - hypothetical protein PP_4580 6 None None None 26990196 Common - response regulator PP_3484 207 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990608 Nonpathogen - hypothetical protein PP_3903 1 None None None 26991420 Common - D-lactate dehydrogenase, putative PP_4737 199 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 26989163 Common ahpF alkyl hydroperoxide reductase, F subunit PP_2440 247 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 26991546 Common - branched-chain amino acid ABC transporter, permease protein PP_4866 169 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 26989569 Nonpathogen - hypothetical protein PP_2850 1 None None None 26987249 Common trx-1 thioredoxin PP_0510 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 26987483 Common - hypoxanthine-guanine phosphoribosyltransferase PP_0747 127 COG0634 Hpt, Hypoxanthine-guanine phosphoribosyltransferase Nucleotide transport and metabolism 26991914 Common - hypothetical protein PP_5238 25 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 26991634 Common - acetyltransferase, GNAT family PP_4956 63 COG2153 ElaA, Predicted acyltransferase General function prediction only 26991255 Common cysK cysteine synthase A PP_4571 219 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 26986892 Common - citrate transporter PP_0147 63 COG2851 CitM, H+/citrate symporter Energy production and conversion 26989160 Common - acyl-CoA dehydrogenase, putative PP_2437 152 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987868 Common nhaA sodium-proton antiporter NhaA PP_1132 106 COG3004 NhaA, Na+/H+ antiporter Inorganic ion transport and metabolism 26990273 Common - hypothetical protein PP_3561 55 COG0679 COG0679, Predicted permeases General function prediction only 26990636 Common - transporter, sodium/sulfate symporter family PP_3931 141 COG0471 CitT, Di- and tricarboxylate transporters Inorganic ion transport and metabolism 26989392 Common - pentapeptide repeat family protein PP_2673 91 COG1357 COG1357, Uncharacterized low-complexity proteins Function unknown 26990218 Common - magnesium chelatase, subunit ChII PP_3506 69 COG1239 ChlI, Mg-chelatase subunit ChlI Coenzyme metabolism 26990782 Common hcp-2 hcp protein PP_4082 29 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 26991561 Common - iron ABC transporter, permease protein PP_4882 216 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 26986886 Common - ABC transporter, ATP-binding protein, putative PP_0141 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 26989334 Common hcp-1 hcp protein PP_2615 30 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 26988498 Common gyrA DNA gyrase subunit A PP_1767 230 COG0188 GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair 26987409 Common - hypothetical protein PP_0673 1 None None None 26989758 Common - pyocin R2_PP, conserved hypothetical protein PP_3039 1 None None None 26988745 Common - lipoprotein, putative PP_2020 1 None None None 26991457 Common - transcriptional regulator, AsnC family PP_4776 149 COG1522 Lrp, Transcriptional regulators Transcription 26989622 Common ppiB peptidyl-prolyl cis-trans isomerase B PP_2903 201 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 26989390 Common - sensor histidine kinase PP_2671 150 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 26989353 Common - cellulose synthase, putative PP_2634 15 COG0455 COG0455, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26991157 Common mgtE magnesium transporter PP_4471 176 COG2239 MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) Inorganic ion transport and metabolism 26988952 Common - putative monovalent cation/H+ antiporter subunit D PP_2228 178 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 26991865 Common - hypothetical protein PP_5189 1 None None None 26988717 Nonpathogen - hypothetical protein PP_1991 1 None None None 26990687 Common - hypothetical protein PP_3982 11 COG1106 COG1106, Predicted ATPases General function prediction only 26989848 Common galE UDP-glucose-4-epimerase PP_3129 232 COG1087 GalE, UDP-glucose 4-epimerase Cell envelope biogenesis, outer membrane 26991396 Common nusA transcription elongation factor NusA PP_4713 216 COG0195 NusA, Transcription elongation factor Transcription 161378132 Common - lipid kinase PP_2125 110 COG1597 LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase Lipid metabolism / General function prediction only 26988921 Common - hypothetical protein PP_2197 1 None None None 26992069 Common - hypothetical protein PP_5393 14 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 26990650 Common - hypothetical protein PP_3945 19 COG2309 AmpS, Leucyl aminopeptidase (aminopeptidase T) Amino acid transport and metabolism 26988370 Common fpr ferredoxin--NADP reductase PP_1638 107 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26989152 Common - hypothetical protein PP_2429 54 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26988399 Common - transporter, putative PP_1667 171 COG0628 PerM, Predicted permease General function prediction only 26987298 Common aroQ-1 3-dehydroquinate dehydratase PP_0560 169 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 26988914 Common - hypothetical protein PP_2190 1 None None None 26989183 Common - inosine-uridine preferring nucleoside hydrolase PP_2460 89 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 26990699 Common - hypothetical protein PP_3994 37 COG2923 DsrF, Uncharacterized protein involved in the oxidation of intracellular sulfur Inorganic ion transport and metabolism 26988562 Common - oxidase, putative PP_1832 28 COG1791 COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 26989694 Common - transposase family protein PP_2975 53 None None None 26990400 Common - hypothetical protein PP_3692 16 COG4988 CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components Energy production and conversion / Posttranslational modification, protein turnover, chaperones 26991006 Common - phenazine biosynthesis protein, PhzF family PP_4315 119 COG0384 COG0384, Predicted epimerase, PhzC/PhzF homolog General function prediction only 26990310 Common - 5-dehydro-4-deoxyglucarate dehydratase PP_3599 226 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 26987590 Common hisS histidyl-tRNA synthetase PP_0854 247 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26990765 Common ivd isovaleryl-CoA dehydrogenase PP_4064 170 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26986825 Common - hypothetical protein PP_0080 4 COG2910 COG2910, Putative NADH-flavin reductase General function prediction only 26991447 Common - ATP-dependent RNA helicase, DEAD box family PP_4766 229 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 26987306 Common - hypothetical protein PP_0568 19 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987387 Common - acetyltransferase, GNAT family PP_0651 16 COG0456 RimI, Acetyltransferases General function prediction only 26990489 Common - hypothetical protein PP_3784 18 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26991307 Common - hypothetical protein PP_4623 1 None None None 26988131 Common - hypothetical protein PP_1397 1 None None None 26989783 Common gpX pyocin R2_PP, tail component protein PP_3064 2 COG5004 COG5004, P2-like prophage tail protein X General function prediction only 26989082 Common - type 1 pili subunit CsuA/B protein, putative PP_2358 8 COG5430 COG5430, Uncharacterized secreted protein Function unknown 26990831 Common - outer membrane siderophore receptor, putative PP_4137 75 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26989948 Common - phosphoribosyl transferase domain protein PP_3230 69 COG1926 COG1926, Predicted phosphoribosyltransferases General function prediction only 26990734 Common nhaB sodium/proton antiporter PP_4031 26 COG3067 NhaB, Na+/H+ antiporter Inorganic ion transport and metabolism 26988389 Common mazG nucleoside triphosphate pyrophosphohydrolase PP_1657 156 COG3956 COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain General function prediction only 26986930 Common hemC porphobilinogen deaminase PP_0186 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 26990481 Common rarD-3 rarD protein PP_3776 75 COG2962 RarD, Predicted permeases General function prediction only 26990993 Common - transporter, putative PP_4302 12 COG4413 Utp, Urea transporter Amino acid transport and metabolism 26988225 Common - sensor histidine kinase/response regulator PP_1492 222 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 26988455 Common - ABC transporter, permease protein PP_1723 170 COG1177 PotC, ABC-type spermidine/putrescine transport system, permease component II Amino acid transport and metabolism 26987273 Common - outer membrane ferric siderophore receptor PP_0535 109 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26987375 Nonpathogen - hypothetical protein PP_0639 2 None None None 26987567 Nonpathogen - hypothetical protein PP_0831 2 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 26988078 Common - hypothetical protein PP_1344 2 COG4701 COG4701, Uncharacterized protein conserved in bacteria Function unknown 26989399 Common - aldehyde dehydrogenase family protein PP_2680 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26989957 Common - Tn4652, cointegrate resolution protein T, putative PP_3239 13 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 26989386 Common - ABC efflux transporter, permease protein PP_2667 105 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 26991412 Common recN DNA repair protein RecN PP_4729 198 COG0497 RecN, ATPase involved in DNA repair DNA replication, recombination, and repair 26990327 Common - hypothetical protein PP_3616 4 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 26987674 Common - hypothetical protein PP_0938 55 COG3164 COG3164, Predicted membrane protein Function unknown 26988778 Common - hypothetical protein PP_2053 8 None None None 26990774 Common - hypothetical protein PP_4073 11 None None None 26991575 Common - N-acetylmuramoyl-L-alanine amidase PP_4897 179 COG0860 AmiC, N-acetylmuramoyl-L-alanine amidase Cell envelope biogenesis, outer membrane 26986760 Common - GTP-binding protein, putative PP_0015 33 COG2842 COG2842, Uncharacterized ATPase, putative transposase General function prediction only 26988307 Nonpathogen - hypothetical protein PP_1575 1 None None None 26987849 Common - pyridoxal-phosphate dependent enzyme family protein PP_1113 217 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 26990145 Common - hypothetical protein PP_3432 4 None None None 26990092 Common - 2-ketogluconate transporter, putative PP_3377 126 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26990405 Common - hypothetical protein PP_3697 23 COG4913 COG4913, Uncharacterized protein conserved in bacteria Function unknown 26988232 Common - lipoprotein, putative PP_1500 60 COG1073 COG1073, Hydrolases of the alpha/beta superfamily General function prediction only 26991780 Common thiG thiazole synthase PP_5104 166 COG2022 ThiG, Uncharacterized enzyme of thiazole biosynthesis Nucleotide transport and metabolism 26987905 Common - hypothetical protein PP_1170 81 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 26988718 Common - aspartate-semialdehyde dehydrogenase PP_1992 166 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 26988938 Common fadB2x 3-hydroxyacyl-CoA dehydrogenase FadB2x PP_2214 217 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26989850 Common - hypothetical protein PP_3131 1 None None None 26987655 Common - hypothetical protein PP_0919 1 None None None 26991655 Common - hypothetical protein PP_4978 5 None None None 26990068 Common - hypothetical protein PP_3353 92 COG1262 COG1262, Uncharacterized conserved protein Function unknown 26991794 Common - thiosulfate sulfurtransferase, putative PP_5118 144 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 26988158 Common - hypothetical protein PP_1425 1 None None None 26988522 Common - aldolase/synthase, putative PP_1791 170 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 26988862 Common - hypothetical protein PP_2138 36 COG4728 COG4728, Uncharacterized protein conserved in bacteria Function unknown 26991201 Common recQ ATP-dependent DNA helicase RecQ PP_4516 220 COG0514 RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair 26987982 Nonpathogen - hypothetical protein PP_1247 1 None None None 26990290 Common - phosphoglucomutase PP_3578 234 COG0033 Pgm, Phosphoglucomutase Carbohydrate transport and metabolism 26990346 Common - sulfonate ABC transporter, permease protein, putative PP_3635 187 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 26989725 Common - RNA polymerase sigma factor PP_3006 124 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988426 Common - hypothetical protein PP_1694 140 COG1322 COG1322, Uncharacterized protein conserved in bacteria Function unknown 26990088 Common - bacterial surface antigen family protein PP_3373 160 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 26989113 Common - hypothetical protein PP_2389 11 COG3403 COG3403, Uncharacterized conserved protein Function unknown 26991231 Common - glutamine synthetase, putative PP_4547 230 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26986998 Common - molybdopterin oxidoreductase, alpha subunit PP_0256 173 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 26989573 Common - hypothetical protein PP_2854 1 None None None 26990928 Common dsbG disulfide isomerase/thiol-disulfide oxidase PP_4237 34 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 26987060 Common - hypothetical protein PP_0318 2 None None None 26992052 Common - hypothetical protein PP_5376 1 None None None 26991871 Common - iron ABC transporter, permease protein, putative PP_5195 143 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 26988983 Common - sigma-54 dependent transcriptional regulator PP_2259 181 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 26987077 Common - glutathione S-transferase family protein PP_0335 77 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26989212 Common - xenobiotic reductase, putative PP_2489 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26989033 Common - hypothetical protein PP_2309 5 COG3728 XtmA, Phage terminase, small subunit DNA replication, recombination, and repair 26988113 Common pcaB 3-carboxy-cis,cis-muconate cycloisomerase PP_1379 222 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 26987875 Common livM leucine/isoleucine/valine transporter permease subunit PP_1139 147 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 26987894 Common - hypothetical protein PP_1159 3 None None None 26990951 Common - hypothetical protein PP_4260 22 COG3198 COG3198, Uncharacterized protein conserved in bacteria Function unknown 26990815 Common nuoCD bifunctional NADH:ubiquinone oxidoreductase subunit C/D PP_4121 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 26987411 Common gdhA glutamate dehydrogenase PP_0675 176 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 26991587 Common serB phosphoserine phosphatase PP_4909 159 COG0560 SerB, Phosphoserine phosphatase Amino acid transport and metabolism 26991598 Common - lipoprotein, putative PP_4920 13 None None None 26988555 Common - hypothetical protein PP_1825 1 None None None 26987685 Common - hypothetical protein PP_0949 140 COG1660 COG1660, Predicted P-loop-containing kinase General function prediction only 26987021 Common - hypothetical protein PP_0279 14 None None None 26989011 Common 16 phage internal core protein PP_2287 93 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 26987010 Common oprQ outer membrane protein OprE3 PP_0268 10 None None None 26989609 Common xthA exonuclease III PP_2890 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 26989426 Common - exodeoxyribonuclease III, putative PP_2707 196 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 26986978 Common lsfA antioxidant protein LsfA PP_0235 209 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 26989044 Common - hypothetical protein PP_2320 93 COG1376 ErfK, Uncharacterized protein conserved in bacteria Function unknown 26989920 Common - BNR domain protein PP_3201 30 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 26987135 Common folK-1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase PP_0393 128 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 26987046 Common - hypothetical protein PP_0304 61 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 26990319 Common - transcriptional regulator, LysR family PP_3608 89 COG0583 LysR, Transcriptional regulator Transcription 26988967 Common - hypothetical protein PP_2243 20 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 26987667 Common gatA aspartyl/glutamyl-tRNA amidotransferase subunit A PP_0931 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 26990654 Common - transcriptional regulator, TetR family PP_3949 94 COG1309 AcrR, Transcriptional regulator Transcription 26988335 Common lpxA UDP-N-acetylglucosamine acyltransferase PP_1603 165 COG1043 LpxA, Acyl- acyl carrier protein 26989744 Common - transporter, LysE family PP_3025 109 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26990419 Common - sensory box protein PP_3711 185 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26989270 Common - hypothetical protein PP_2550 212 COG0217 COG0217, Uncharacterized conserved protein Function unknown 26987660 Common - hypothetical protein PP_0924 61 COG3176 COG3176, Putative hemolysin General function prediction only 26989102 Common yhgI yhgI protein PP_2378 50 COG0694 COG0694, Thioredoxin-like proteins and domains Posttranslational modification, protein turnover, chaperones 26987571 Common secD preprotein translocase subunit SecD PP_0835 206 COG0342 SecD, Preprotein translocase subunit SecD Intracellular trafficking and secretion 26990956 Common anr transcriptional regulator Anr PP_4265 164 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 26989400 Common - pyrroloquinoline quinone biosynthesis protein PqqD PP_2681 13 None None None 26987100 Common rarD-1 rarD protein PP_0358 95 COG2962 RarD, Predicted permeases General function prediction only 26989883 Common benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase PP_3164 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991516 Common - hypothetical protein PP_4836 80 COG2847 COG2847, Uncharacterized protein conserved in bacteria Function unknown 26989417 Common metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase PP_2698 145 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 26989868 Common - transcriptional regulator, AraC family PP_3149 54 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26990185 Common - curli fiber protein CsgF, putative PP_3473 13 None None None 26989048 Common aroF-1 phospho-2-dehydro-3-heoxyheptonate aldolase PP_2324 107 COG0722 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 26991439 Common - major facilitator family transporter PP_4758 83 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26990676 Common - hypothetical protein PP_3971 1 None None None 26991551 Common - conserved hypothetical protein TIGR00730 PP_4871 108 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 26990079 Common - response regulator PP_3364 56 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 26991282 Common - hypothetical protein PP_4598 56 COG3781 COG3781, Predicted membrane protein Function unknown 26989281 Common - secreted hemolysin-type calcium-binding bacteriocin, putative PP_2561 88 COG2931 COG2931, RTX toxins and related Ca2+-binding proteins Secondary metabolites biosynthesis, transport, and catabolism 26987455 Common - translation-associated GTPase PP_0719 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 26987718 Common - hypothetical protein PP_0982 74 COG0795 COG0795, Predicted permeases General function prediction only 26988998 Nonpathogen - hypothetical protein PP_2274 1 None None None 26987109 Common - hypothetical protein PP_0367 1 None None None 26989123 Common - hypothetical protein PP_2400 5 COG2259 COG2259, Predicted membrane protein Function unknown 26991063 Common - hypothetical protein PP_4374 1 None None None 26987887 Nonpathogen - hypothetical protein PP_1151 1 None None None 26989343 Common - hypothetical protein PP_2624 49 COG3516 COG3516, Uncharacterized protein conserved in bacteria Function unknown 26990208 Common - hypothetical protein PP_3496 153 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26987142 Common apaG ApaG PP_0400 88 COG2967 ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport Inorganic ion transport and metabolism 26989109 Common azlC branched-chain amino acid transport protein AzlC PP_2385 94 COG1296 AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) Amino acid transport and metabolism 26988851 Common - sensor histidine kinase PP_2127 148 COG4585 COG4585, Signal transduction histidine kinase Signal transduction mechanisms 26988500 Common pheA chorismate mutase/prephenate dehydratase PP_1769 213 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 26990744 Common gnd 6-phosphogluconate dehydrogenase-like protein PP_4043 186 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 26991672 Common algH hypothetical protein PP_4995 129 COG1678 COG1678, Putative transcriptional regulator Transcription 26987747 Common glk glucokinase PP_1011 91 COG0837 Glk, Glucokinase Carbohydrate transport and metabolism 26990448 Common - glutathione S-transferase family protein PP_3742 75 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26989228 Common - GAF domain/GGDEF domain protein PP_2505 186 COG3706 PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain Signal transduction mechanisms 26986878 Common algB alginate biosynthesis transcriptional regulatory protein AlgB PP_0133 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26987468 Common hemA glutamyl-tRNA reductase PP_0732 182 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 26987398 Common - threonine synthase PP_0662 130 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 26986913 Common - dioxygenase, TauD/TfdA family PP_0169 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26989239 Common - transcriptional regulator, LysR family PP_2516 182 COG0583 LysR, Transcriptional regulator Transcription 26989491 Common - monooxygenase, putative PP_2772 119 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26990932 Nonpathogen - hypothetical protein PP_4241 1 None None None 26989737 Common - hypothetical protein PP_3018 1 None None None 26986872 Common - thiol:disulfide interchange protein, DsbA family PP_0127 69 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 26989890 Common - hypothetical protein PP_3171 106 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26988800 Common - hypothetical protein PP_2075 5 None None None 26987740 Common - hypothetical protein PP_1004 79 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 26989749 Nonpathogen - hypothetical protein PP_3030 1 None None None 26991530 Common - hypothetical protein PP_4850 17 COG0628 PerM, Predicted permease General function prediction only 26989363 Nonpathogen - hypothetical protein PP_2644 1 None None None 26988324 Common tsf elongation factor Ts PP_1592 216 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 26986785 Nonpathogen - hypothetical protein PP_0040 1 None None None 26987780 Common uxpA lipoprotein UxpA PP_1044 34 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 26990798 Common - low-affinity inorganic phosphate transporter PP_4103 159 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 26988427 Common - sodium-solute symporter/sensory box histidine kinase/response regulator, putative PP_1695 224 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 26990352 Common - cytosine/purine/uracil/thiamine/allantoin permease family protein PP_3641 49 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 26990306 Common - amino acid ABC transporter, permease protein PP_3595 171 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 26990821 Common nuoJ NADH dehydrogenase subunit J PP_4127 29 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 26991034 Common flhA flagellar biosynthesis protein A PP_4344 127 COG1298 FlhA, Flagellar biosynthesis pathway, component FlhA Cell motility and secretion / Intracellular trafficking and secretion 26991582 Common motB flagellar motor protein MotB PP_4904 89 COG1360 MotB, Flagellar motor protein Cell motility and secretion 26990277 Common - transporter, LysE family PP_3565 123 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26989303 Common - hydroxydechloroatrazine ethylaminohydrolase PP_2584 181 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 26988037 Common - conserved hypothetical protein TIGR00486 PP_1302 114 COG0327 COG0327, Uncharacterized conserved protein Function unknown 26987278 Common - DedA family protein PP_0540 152 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 26988007 Common - multidrug efflux MFS membrane fusion protein, putative PP_1272 150 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26988275 Common - hypothetical protein PP_1543 3 None None None 26988169 Common pdxJ pyridoxal phosphate biosynthetic protein PdxJ PP_1436 139 COG0854 PdxJ, Pyridoxal phosphate biosynthesis protein Coenzyme metabolism 26990573 Common - group II intron-encoding maturase PP_3868 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26988210 Common recJ single-stranded-DNA-specific exonuclease RecJ PP_1477 192 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 26988212 Common hicB-1 hicB protein PP_1479 30 COG4226 HicB, Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters Function unknown 26987591 Common - hypothetical protein PP_0855 54 COG2976 COG2976, Uncharacterized protein conserved in bacteria Function unknown 26988634 Common murB UDP-N-acetylenolpyruvoylglucosamine reductase PP_1904 199 COG0812 MurB, UDP-N-acetylmuramate dehydrogenase Cell envelope biogenesis, outer membrane 26988771 Common - transcriptional regulator, LysR family PP_2046 108 COG0583 LysR, Transcriptional regulator Transcription 26988516 Common rmlB dTDP-glucose 4,6-dehydratase PP_1785 232 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 26991537 Common - hypothetical protein PP_4857 52 COG2982 AsmA, Uncharacterized protein involved in outer membrane biogenesis Cell envelope biogenesis, outer membrane 26991693 Common tatB sec-independent translocase PP_5017 17 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 26989714 Common - DNA topology modulation kinase FlaR, putative PP_2995 47 COG0563 Adk, Adenylate kinase and related kinases Nucleotide transport and metabolism 26987764 Common - transcriptional regulator, LysR family PP_1028 187 COG0583 LysR, Transcriptional regulator Transcription 26989917 Common - ferredoxin, 2Fe-2S PP_3198 40 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 26991945 Common dadX alanine racemase PP_5269 200 COG0787 Alr, Alanine racemase Cell envelope biogenesis, outer membrane 26987779 Common uxpB UxpB protein PP_1043 65 COG3211 PhoX, Predicted phosphatase General function prediction only 26988753 Common - TPR domain protein PP_2028 48 COG4976 COG4976, Predicted methyltransferase (contains TPR repeat) General function prediction only 26989435 Common arsC-3 arsenate reductase PP_2716 123 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 26988658 Common arsR-1 arsenic resistance transcriptional regulator PP_1930 160 COG0640 ArsR, Predicted transcriptional regulators Transcription 26988346 Common ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PP_1614 190 COG1211 IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase Lipid metabolism 26988796 Common - hypothetical protein PP_2071 38 COG0662 {ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism 26988266 Nonpathogen - hypothetical protein PP_1534 1 None None None 26990072 Common vdh vanillin dehydrogenase PP_3357 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26991373 Common - heme/hemin ABC transporter, periplasmic heme/hemin-binding protein PP_4689 136 COG4558 ChuT, ABC-type hemin transport system, periplasmic component Inorganic ion transport and metabolism 26989874 Common - outer membrane ferric siderophore receptor, putative PP_3155 118 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 26988022 Common - alginate biosynthesis protein Alg8 PP_1287 5 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 26987174 Common - HesB/YadR/YfhF family protein PP_0433 166 COG0316 IscA, Uncharacterized conserved protein Function unknown 26988905 Common - transcriptional regulator, Cro/CI family PP_2181 64 COG1396 HipB, Predicted transcriptional regulators Transcription 26991619 Common - hypothetical protein PP_4941 2 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 26991974 Common - hypothetical protein PP_5298 123 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 26987690 Common - hypothetical protein PP_0954 60 COG1934 COG1934, Uncharacterized protein conserved in bacteria Function unknown 26989067 Common - hypothetical protein PP_2343 7 None None None 26986771 Common - cobalt/cadmium/zinc transporter, CDF family PP_0026 211 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 26991573 Common miaA tRNA delta(2)-isopentenylpyrophosphate transferase PP_4895 214 COG0324 MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase Translation, ribosomal structure and biogenesis 26989557 Common - hypothetical protein PP_2838 12 None None None 26990495 Common dapF diaminopimelate epimerase PP_3790 202 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 26990042 Common - hypothetical protein PP_3324 35 COG1469 COG1469, Uncharacterized conserved protein Function unknown 26987703 Common hisC histidinol-phosphate aminotransferase PP_0967 231 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 26988386 Common cysM cysteine synthase B PP_1654 230 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 26989521 Common - amino acid permease family protein PP_2802 183 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26988636 Common - hydrolase, haloacid dehalogenase-like family PP_1907 197 COG0546 Gph, Predicted phosphatases General function prediction only 26986747 Common - ParA family protein PP_0002 229 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26991314 Common - transcriptional regulator, MerR family PP_4630 50 COG0789 SoxR, Predicted transcriptional regulators Transcription 26989761 Common - terminase, large subunit, putative PP_3042 36 COG5525 COG5525, Bacteriophage tail assembly protein General function prediction only 26987431 Common - hypothetical protein PP_0695 6 None None None 161378140 Common - RNA polymerase sigma factor PP_0994 122 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26991932 Common - cyclic nucleotide-binding protein PP_5256 185 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26990301 Common tyrB-2 aromatic amino acid aminotransferase PP_3590 74 COG1448 TyrB, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26987158 Common trpE anthranilate synthase component I PP_0417 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 26988813 Common sigX RNA polymerase sigma factor SigX PP_2088 166 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988480 Common - acetyltransferase, GNAT family PP_1749 63 COG1181 DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes Cell envelope biogenesis, outer membrane 26991402 Common rrmJ ribosomal RNA large subunit methyltransferase J PP_4719 140 COG0293 FtsJ, 23S rRNA methylase Translation, ribosomal structure and biogenesis 26987978 Nonpathogen - hypothetical protein PP_1243 1 None None None 26990104 Common - hypothetical protein PP_3389 5 None None None 26986907 Common - transcriptional regulator, GntR family PP_0163 123 COG1802 GntR, Transcriptional regulators Transcription 26987418 Common - hypothetical protein PP_0682 55 COG2862 COG2862, Predicted membrane protein Function unknown 26989473 Common - porin, putative PP_2754 8 None None None 26989374 Nonpathogen - hypothetical protein PP_2655 1 None None None 26988486 Common fumC-2 fumarate hydratase PP_1755 212 COG0114 FumC, Fumarase Energy production and conversion 26990441 Common - ABC transporter, permease protein, putative PP_3734 43 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 26987734 Common - hypothetical protein PP_0998 1 None None None 26990543 Nonpathogen - hypothetical protein PP_3838 1 None None None 26991384 Common panC pantoate--beta-alanine ligase PP_4700 182 COG0414 PanC, Panthothenate synthetase Coenzyme metabolism 26991709 Common hutU urocanate hydratase PP_5033 97 COG2987 HutU, Urocanate hydratase Amino acid transport and metabolism 26987711 Common hupN DNA-binding protein HU, form N PP_0975 137 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 26991272 Common - nitroreductase family protein PP_4588 71 COG0778 NfnB, Nitroreductase Energy production and conversion 26988478 Common - hypothetical protein PP_1747 18 COG3089 COG3089, Uncharacterized protein conserved in bacteria Function unknown 26987074 Common - acyltransferase, putative PP_0332 30 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 26989279 Common hasE metalloprotease secretion protein PP_2559 118 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26987538 Common chev-1 chemotaxis protein CheV PP_0802 155 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26990299 Common - multidrug resistance transporter, Bcr/CflA family PP_3588 216 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989914 Common - hypothetical protein PP_3195 38 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 26989550 Common - mandelate racemase/muconate lactonizing enzyme family protein PP_2831 104 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 26990592 Common - hypothetical protein PP_3887 1 None None None 26991430 Common - amino acid ABC transporter, permease protein PP_4749 170 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26991872 Common - iron ABC transporter, periplasmic iron-binding protein, putative PP_5196 124 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 26990587 Common - phage terminase, small subunit, putative PP_3882 22 COG3747 COG3747, Phage terminase, small subunit DNA replication, recombination, and repair 26988284 Common - phage replication protein, putative PP_1552 51 COG1484 DnaC, DNA replication protein DNA replication, recombination, and repair 26991617 Common - hypothetical protein PP_4939 4 None None None 26990254 Common - hypothetical protein PP_3542 1 None None None 26988946 Common - hypothetical protein PP_2222 1 None None None 26990641 Nonpathogen - hypothetical protein PP_3936 1 None None None 26989648 Common nspC carboxynorspermidine decarboxylase PP_2929 57 COG0019 LysA, Diaminopimelate decarboxylase Amino acid transport and metabolism 26989063 Common acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase PP_2339 210 COG1049 AcnB, Aconitase B Energy production and conversion 26988900 Common - transcriptional regulator, LysR family PP_2176 171 COG0583 LysR, Transcriptional regulator Transcription 26990731 Nonpathogen - hypothetical protein PP_4028 1 None None None 26988510 Common - lipopolysaccharide ABC export system, ATP-binding protein PP_1779 248 COG1134 TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 26988525 Common - hypothetical protein PP_1794 5 None None None 26990417 Nonpathogen - hypothetical protein PP_3709 1 None None None 26991045 Common fliO flagellar assembly protein FliO PP_4356 14 COG3190 FliO, Flagellar biogenesis protein Cell motility and secretion 26990911 Common ppsD non-ribosomal siderophore peptide synthetase PP_4219 221 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 26990044 Common - hypothetical protein PP_3326 9 COG5266 CbiK, ABC-type Co2+ transport system, periplasmic component Inorganic ion transport and metabolism 26991482 Common - hypothetical protein PP_4802 15 COG2921 COG2921, Uncharacterized conserved protein Function unknown 26987593 Common engA GTP-binding protein EngA PP_0857 236 COG1160 COG1160, Predicted GTPases General function prediction only 26990659 Common - periplasmic binding protein, putative PP_3954 89 COG2358 Imp, TRAP-type uncharacterized transport system, periplasmic component General function prediction only 26987255 Common ribH riboflavin synthase subunit beta PP_0517 230 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 26987282 Common - ethanolamine transporter PP_0544 154 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 26991701 Common mdoH glucosyltransferase MdoH PP_5025 54 COG2943 MdoH, Membrane glycosyltransferase Cell envelope biogenesis, outer membrane 26986992 Common - hypothetical protein PP_0249 39 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 26991360 Common - putative sulfite oxidase subunit YedY PP_4676 118 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 26991662 Common - conserved hypothetical protein TIGR00046 PP_4985 203 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 26987246 Common - ABC efflux transporter, ATP-binding protein, putative PP_0507 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 26990038 Common - hypothetical protein PP_3320 11 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 26989968 Common - transporter, putative PP_3250 15 COG3202 COG3202, ATP/ADP translocase Energy production and conversion 26988879 Common lolD lipoprotein releasing system, ATP-binding protein PP_2155 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 26987036 Common - glycine betaine/L-proline ABC transporter, ATP-binding subunit PP_0294 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 26988354 Common nlpD lipoprotein NlpD PP_1622 190 COG0739 NlpD, Membrane proteins related to metalloendopeptidases Cell envelope biogenesis, outer membrane 26987358 Common - hypothetical protein PP_0621 4 None None None 26988250 Common - hypothetical protein PP_1518 25 None None None 26987556 Common - acetyltransferase, GNAT family PP_0820 112 COG1670 RimL, Acetyltransferases, including N-acetylases of ribosomal proteins Translation, ribosomal structure and biogenesis 26990968 Common - transcriptional regulator, GntR family PP_4277 118 COG1802 GntR, Transcriptional regulators Transcription 26991225 Common ppiA peptidyl-prolyl cis-trans isomerase A PP_4541 199 COG0652 PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones 26989466 Common - hypothetical protein PP_2747 27 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 26991601 Common - outer membrane efflux protein PP_4923 134 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26987056 Common - hypothetical protein PP_0314 17 None None None 26990345 Common - acetyltransferase, GNAT family PP_3634 1 None None None 26989298 Common - hypothetical protein PP_2579 63 COG2194 COG2194, Predicted membrane-associated, metal-dependent hydrolase General function prediction only 26990035 Common - hypothetical protein PP_3317 3 None None None 26989751 Common - DNA-binding protein Roi-related protein PP_3032 1 COG3645 COG3645, Uncharacterized phage-encoded protein Function unknown 26990823 Common nuoL NADH dehydrogenase subunit L PP_4129 210 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 26990111 Common - hypothetical protein PP_3396 2 None None None 26989098 Common - hypothetical protein PP_2374 10 None None None 26989566 Common ureJ urease accessory protein UreJ PP_2847 2 COG2370 HupE, Hydrogenase/urease accessory protein Posttranslational modification, protein turnover, chaperones 26987662 Common - hypothetical protein PP_0926 140 COG0679 COG0679, Predicted permeases General function prediction only 26991145 Common - transposase, putative PP_4459 50 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 26988897 Common - transcriptional regulator, AraC family PP_2173 124 COG3449 COG3449, DNA gyrase inhibitor DNA replication, recombination, and repair 26988608 Common - hypothetical protein PP_1878 1 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 26990005 Common - transcriptional regulator, Crp/Fnr family PP_3287 145 COG0664 Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Signal transduction mechanisms 26987637 Common colR DNA-binding response regulator ColR PP_0901 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988825 Common - two-component sensor protein PP_2100 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26986822 Common betC choline sulfatase PP_0077 92 COG3119 AslA, Arylsulfatase A and related enzymes Inorganic ion transport and metabolism 26990718 Common - MutT/nudix family protein PP_4013 52 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26988621 Common fimI type 1 pili subunit FimI PP_1891 11 COG3539 FimA, P pilus assembly protein, pilin FimA Cell motility and secretion / Intracellular trafficking and secretion 26989014 Nonpathogen - hypothetical protein PP_2290 1 None None None 26989483 Common msuE NADH-dependent FMN reductase MsuE PP_2764 58 COG0431 COG0431, Predicted flavoprotein General function prediction only 26989358 Common - dihydrodipicolinate synthase, putative PP_2639 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 26991285 Common - transcriptional regulator, LysR family PP_4601 180 COG0583 LysR, Transcriptional regulator Transcription 26990558 Nonpathogen - hypothetical protein PP_3853 1 None None None 26988384 Common - sensor histidine kinase PP_1652 217 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988809 Common menG ribonuclease activity regulator protein RraA PP_2084 90 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 26987925 Common - hypothetical protein PP_1190 31 COG4807 COG4807, Uncharacterized protein conserved in bacteria Function unknown 26987502 Common - hypothetical protein PP_0766 19 None None None 26986846 Common - sulfate transporter, putative PP_0101 148 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 26987136 Common cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase PP_0394 190 COG0617 PcnB, tRNA nucleotidyltransferase/poly(A) polymerase Translation, ribosomal structure and biogenesis 26990267 Common - transmembrane sensor, putative PP_3555 44 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26987697 Common ttg2D toluene-tolerance protein PP_0961 64 COG2854 Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component Secondary metabolites biosynthesis, transport, and catabolism 26991189 Common - hypothetical protein PP_4504 2 COG3678 CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism 26987641 Common - hypothetical protein PP_0905 1 None None None 26989451 Common - hypothetical protein PP_2732 59 COG3046 COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase General function prediction only 26989000 Common - phage exonuclease, putative PP_2276 57 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 26990721 Common purB adenylosuccinate lyase PP_4016 225 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 26991369 Common - hypothetical protein PP_4685 10 COG3070 TfoX, Regulator of competence-specific genes Transcription 26991129 Common - ISPpu14, transposase Orf3 PP_4443 64 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990115 Common - hypothetical protein PP_3401 1 None None None 26989479 Common - ribose transport permease protein, putative PP_2760 102 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 26988025 Common - polysaccharide deacetylase family protein PP_1290 12 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 26990256 Common - transcriptional regulator, GntR family PP_3544 216 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26991642 Common epd glyceraldehyde-3-phosphate dehydrogenase PP_4964 217 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 26991311 Common - transcriptional regulator, LysR family PP_4627 190 COG0583 LysR, Transcriptional regulator Transcription 26989664 Common - sensor histidine kinase/response regulator PP_2945 223 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26988353 Common pcm protein-L-isoaspartate O-methyltransferase PP_1621 156 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 26987772 Common - periplasmic binding domain/transglycosylase SLT domain fusion protein PP_1036 129 COG4623 COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein Cell envelope biogenesis, outer membrane 26990160 Common - hypothetical protein PP_3447 41 COG4125 COG4125, Predicted membrane protein Function unknown 26990435 Common - sensor histidine kinase/response regulator PP_3728 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991814 Common - transcriptional regulator, LysR family PP_5138 192 COG0583 LysR, Transcriptional regulator Transcription 26989539 Common nfxB transcriptional regulator NfxB PP_2820 9 COG1737 RpiR, Transcriptional regulators Transcription 26991726 Common - ISPpu10, transposase PP_5050 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987149 Common - hypothetical protein PP_0408 5 None None None 26988294 Nonpathogen - phage terminase, small subunit, putative PP_1562 2 None None None 26989901 Common - GGDEF domain protein PP_3182 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26991950 Common - hypothetical protein PP_5274 2 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 26988586 Nonpathogen - hypothetical protein PP_1856 1 None None None 26991943 Common - cytochrome c5 PP_5267 43 COG3245 CycB, Cytochrome c5 Energy production and conversion 26988758 Common - hypothetical protein PP_2033 16 None None None 26987009 Common - outer membrane ferric siderophore receptor, putative PP_0267 113 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 26987474 Common - hypothetical protein PP_0738 90 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 26991563 Common - hypothetical protein PP_4885 8 COG4976 COG4976, Predicted methyltransferase (contains TPR repeat) General function prediction only 26991596 Common - hypothetical protein PP_4918 26 COG3151 COG3151, Uncharacterized protein conserved in bacteria Function unknown 26989973 Common - hypothetical protein PP_3255 63 COG1273 COG1273, Uncharacterized conserved protein Function unknown 26991652 Common - Na+/H+ antiporter, putative PP_4974 152 COG0025 NhaP, NhaP-type Na+/H+ and K+/H+ antiporters Inorganic ion transport and metabolism 26989651 Common - amidase PP_2932 216 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 26990948 Common ccoQ-2 cytochrome c oxidase, cbb3-type, CcoQ subunit PP_4257 12 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 26991336 Common - hypothetical protein PP_4652 139 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991109 Common - hypothetical protein PP_4421 235 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26991758 Common pilN type IV pili biogenesis protein PilN PP_5082 37 COG3166 PilN, Tfp pilus assembly protein PilN Cell motility and secretion / Intracellular trafficking and secretion 26988184 Common - hypothetical protein PP_1451 59 COG3034 COG3034, Uncharacterized protein conserved in bacteria Function unknown 26988660 Common - hypothetical protein PP_1932 4 None None None 26989049 Common - 2-dehydropantoate 2-reductase PP_2325 87 COG1893 ApbA, Ketopantoate reductase Coenzyme metabolism 26991668 Common pilH type IV pili response regulator PilH PP_4991 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26987509 Common - OmpA family protein PP_0773 160 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26991037 Nonpathogen - hypothetical protein PP_4347 4 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 26987231 Common - formate dehydrogenase, cytochrome b556 subunit PP_0491 70 COG2864 FdnI, Cytochrome b subunit of formate dehydrogenase Energy production and conversion 26986989 Common ompR osmolarity response regulator PP_0246 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26991608 Common - multidrug efflux SMR transporter PP_4930 123 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 26990102 Nonpathogen - hypothetical protein PP_3387 2 None None None 26987332 Common - transcriptional regulator, TetR family PP_0594 85 COG1309 AcrR, Transcriptional regulator Transcription 26989614 Common - hypothetical protein PP_2895 10 None None None 26991571 Common hflX GTP-binding protein HflX PP_4893 227 COG2262 HflX, GTPases General function prediction only 26988203 Common hom homoserine dehydrogenase PP_1470 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 26990120 Common - acetyltransferase, GNAT family PP_3406 101 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 26989802 Common - hypothetical protein PP_3083 121 COG0679 COG0679, Predicted permeases General function prediction only 26987669 Common mreB rod shape-determining protein MreB PP_0933 236 COG1077 MreB, Actin-like ATPase involved in cell morphogenesis Cell division and chromosome partitioning 26992005 Common pstS phosphate ABC transporter, periplasmic phosphate-binding protein PP_5329 120 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 26989458 Common - sensory box protein, putative PP_2739 87 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 26988344 Common eno phosphopyruvate hydratase PP_1612 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 26988162 Common algN sigma factor algU regulatory protein AlgN PP_1429 48 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 26989154 Common - transcriptional regulator, LysR family PP_2431 157 COG0583 LysR, Transcriptional regulator Transcription 26987648 Nonpathogen - hypothetical protein PP_0912 1 None None None 26992022 Common oadA pyruvate carboxylase subunit B PP_5346 199 COG5016 COG5016, Pyruvate/oxaloacetate carboxyltransferase Energy production and conversion 26991349 Common - hypothetical protein PP_4665 38 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 26991473 Common - hypothetical protein PP_4793 1 None None None 26988134 Common - dicarboxylate MFS transporter PP_1400 152 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989911 Common - hypothetical protein PP_3192 43 COG2964 COG2964, Uncharacterized protein conserved in bacteria Function unknown 26987524 Common - hypothetical protein PP_0788 21 None None None 26989080 Common - phytochrome family protein, putative PP_2356 221 COG4251 COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) Signal transduction mechanisms 26988168 Common recO DNA repair protein RecO PP_1435 63 COG1381 RecO, Recombinational DNA repair protein (RecF pathway) DNA replication, recombination, and repair 26991882 Common - membrane fusion protein PP_5206 142 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26987865 Common pdxH pyridoxamine 5'-phosphate oxidase PP_1129 132 COG0259 PdxH, Pyridoxamine-phosphate oxidase Coenzyme metabolism 26989031 Common - hypothetical protein PP_2307 1 COG5607 COG5607, Uncharacterized conserved protein Function unknown 26988691 Nonpathogen - deoxynucleotide monophosphate kinase, putative PP_1964 2 None None None 26988310 Common - hypothetical protein PP_1578 3 None None None 26987951 Common ruvA Holliday junction DNA helicase motor protein PP_1216 208 COG0632 RuvA, Holliday junction resolvasome, DNA-binding subunit DNA replication, recombination, and repair 26991836 Common - hypothetical protein PP_5160 4 None None None 26991845 Common cysW sulfate ABC transporter, permease protein PP_5169 226 COG4208 CysW, ABC-type sulfate transport system, permease component Inorganic ion transport and metabolism 26988432 Common - acyltransferase PP_1700 156 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 26990625 Common - phage integrase, putative PP_3920 28 None None None 26990736 Common - metallo-beta-lactamase family protein PP_4033 110 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 26990551 Common - carbon-nitrogen hydrolase family protein PP_3846 208 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26990381 Common - hypothetical protein PP_3670 63 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 26987838 Common - hypothetical protein PP_1102 59 COG1407 COG1407, Predicted ICC-like phosphoesterases General function prediction only 26991716 Common fbp fructose-1,6-bisphosphatase PP_5040 108 COG0158 Fbp, Fructose-1,6-bisphosphatase Carbohydrate transport and metabolism 26990662 Common - choline/carnitine/betaine transporter family protein PP_3957 95 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 26990519 Common - polyamine ABC transporter, periplasmic polyamine-binding protein PP_3814 66 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26987169 Common - HIT family protein PP_0428 232 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 26987202 Common rplP 50S ribosomal protein L16 PP_0461 216 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 26988725 Common purF amidophosphoribosyltransferase PP_2000 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 26991804 Common ilvD dihydroxy-acid dehydratase PP_5128 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 26990179 Common - ABC efflux transporter, permease/ATP-binding protein, putative PP_3466 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 26987113 Common - transcriptional regulator, LysR family PP_0371 191 COG0583 LysR, Transcriptional regulator Transcription 26989196 Common - hypothetical protein PP_2473 9 None None None 26988122 Common - drug resistance transporter, EmrB/QacA family PP_1388 231 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989712 Nonpathogen - hypothetical protein PP_2993 1 None None None 26989103 Common - Sco1/SenC family protein PP_2379 104 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 26987207 Common rplE 50S ribosomal protein L5 PP_0466 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 26988858 Common - ISPpu10, transposase PP_2134 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987802 Common - sigma-54 dependent response regulator PP_1066 218 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26986837 Common - lipoprotein, putative PP_0092 1 None None None 26992019 Common - transcriptional regulator, putative PP_5343 60 COG2808 PaiB, Transcriptional regulator Transcription 26991754 Common aroB 3-dehydroquinate synthase PP_5078 206 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 26991858 Common - putative aminotransferase PP_5182 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26991977 Common rpoZ DNA-directed RNA polymerase subunit omega PP_5301 115 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 26989038 Common - hypothetical protein PP_2314 1 None None None 26988188 Common - hypothetical protein PP_1455 38 COG3313 COG3313, Predicted Fe-S protein General function prediction only 26988419 Common - hypothetical protein PP_1687 4 None None None 26986964 Common - ABC transporter, periplasmic binding protein, putative PP_0221 100 COG1464 NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen Inorganic ion transport and metabolism 26987445 Common - transporter, NCS1 nucleoside transporter family PP_0709 29 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 26991927 Common - transporter, putative PP_5251 133 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988673 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_1946 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26987343 Common ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase PP_0606 188 COG0761 LytB, Penicillin tolerance protein Lipid metabolism / Cell envelope biogenesis, outer membrane 26991210 Common - transcriptional regulator, LysR family PP_4525 181 COG0583 LysR, Transcriptional regulator Transcription 26987492 Common - hypothetical protein PP_0756 17 COG2937 PlsB, Glycerol-3-phosphate O-acyltransferase Lipid metabolism 26989469 Common - branched-chain amino acid ABC transporter, permease protein, putative PP_2750 121 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 26990501 Common - L-ornithine N5-oxygenase PP_3796 52 COG3486 IucD, Lysine/ornithine N-monooxygenase Secondary metabolites biosynthesis, transport, and catabolism 26991342 Common - methyl-accepting chemotaxis transducer PP_4658 147 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26988911 Common - universal stress protein family PP_2187 35 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26988885 Common - hypothetical protein PP_2161 1 None None None 26988843 Common - ABC efflux transporter, permease/ATP-binding protein, putative PP_2119 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26990426 Common - hypothetical protein PP_3718 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26987507 Common - toxin ChpB PP_0771 36 COG2337 MazF, Growth inhibitor Signal transduction mechanisms 26990575 Common - phage FluMu protein gp38 PP_3870 2 None None None 26991905 Common - hypothetical protein PP_5229 56 COG3159 COG3159, Uncharacterized protein conserved in bacteria Function unknown 26992095 Common atpI F0F1 ATP synthase subunit I PP_5420 22 COG3312 AtpI, F0F1-type ATP synthase, subunit I Energy production and conversion 26989692 Common dgkA-2 diacylglycerol kinase PP_2973 66 COG0818 DgkA, Diacylglycerol kinase Cell envelope biogenesis, outer membrane 26988737 Common ppnK inorganic polyphosphate/ATP-NAD kinase PP_2012 226 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 26987673 Common cafA cytoplasmic axial filament protein PP_0937 185 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 26991266 Common - hypothetical protein PP_4582 2 None None None 26990900 Common - RNA polymerase sigma factor PP_4208 99 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26987262 Common - periplasmic cobalamin-binding protein HutB, putative PP_0524 77 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 26987914 Common nrdA ribonucleotide-diphosphate reductase subunit alpha PP_1179 228 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 26991855 Common potG putrescine ABC transporter, ATP-binding protein PP_5179 249 COG3842 PotA, ABC-type spermidine/putrescine transport systems, ATPase components Amino acid transport and metabolism 26989317 Nonpathogen - hypothetical protein PP_2598 1 None None None 26989773 Common gpJ pyocin R2_PP, baseplate/tail fiber protein PP_3054 35 COG3948 COG3948, Phage-related baseplate assembly protein General function prediction only 26987721 Common - cold-shock domain family protein PP_0985 178 COG1278 CspC, Cold shock proteins Transcription 26990143 Common - sensory box histidine kinase/response regulator PP_3430 165 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26986858 Common - ABC transporter, permease protein PP_0113 111 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 26987391 Common - fimbrial protein-related protein PP_0655 4 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 26990869 Common - hypothetical protein PP_4177 143 COG1741 COG1741, Pirin-related protein General function prediction only 26991981 Common - epimerase/dehydratase-related protein PP_5305 108 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26989685 Nonpathogen - hypothetical protein PP_2966 1 None None None 26986980 Common ssuA sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA PP_0237 112 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26990931 Nonpathogen - microcin b17 processing protein mcbd, putative PP_4240 1 COG1944 COG1944, Uncharacterized conserved protein Function unknown 26991102 Nonpathogen - hypothetical protein PP_4415 1 None None None 26987717 Nonpathogen - hypothetical protein PP_0981 1 None None None 26990772 Common - hypothetical protein PP_4071 47 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 26989998 Common phaD beta-ketoadipyl CoA thiolase PP_3280 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26990613 Common - hypothetical protein PP_3908 1 COG0021 TktA, Transketolase Carbohydrate transport and metabolism 26988646 Common pabC 4-amino-4-deoxychorismate lyase PP_1917 178 COG0115 IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Amino acid transport and metabolism / Coenzyme metabolism 26990135 Common ltg lytic transglycosylase PP_3422 180 COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) Cell envelope biogenesis, outer membrane 26991732 Common pgm phosphoglyceromutase PP_5056 125 COG0696 GpmI, Phosphoglyceromutase Carbohydrate transport and metabolism 26991528 Common - curved-DNA-binding protein, DnaJ family PP_4848 233 COG0484 DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain Posttranslational modification, protein turnover, chaperones 26989273 Common - major facilitator family transporter PP_2553 135 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989314 Common - ABC transporter, permease/ATP-binding protein, putative PP_2595 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26988533 Common wbpV UDP-sugar epimerase PP_1803 203 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26989265 Common - trans-aconitate methyltransferase, putative PP_2545 69 COG4106 Tam, Trans-aconitate methyltransferase General function prediction only 26986818 Common hemF coproporphyrinogen III oxidase PP_0073 112 COG0408 HemF, Coproporphyrinogen III oxidase Coenzyme metabolism 26991526 Common - phosphinothricin N-acetyltransferase, putative PP_4846 124 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 26988612 Common - hypothetical protein PP_1882 61 COG3209 RhsA, Rhs family protein Cell envelope biogenesis, outer membrane 26988519 Nonpathogen - hypothetical protein PP_1788 1 None None None 26990155 Nonpathogen - hypothetical protein PP_3442 1 None None None 26991136 Common - phosphoglycerate mutase family protein PP_4450 14 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 26988446 Common fklB-2 peptidyl-prolyl cis-trans isomerase, FKBP-type PP_1714 136 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 26986758 Common gyrB DNA gyrase subunit B PP_0013 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 26988815 Common cobA-1 uroporphyrin-III C-methyltransferase PP_2090 203 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 26989021 Common - integrative genetic element Ppu40, integrase PP_2297 134 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 26986929 Common pprA alginate biosynthesis protein PprA PP_0185 178 COG3279 LytT, Response regulator of the LytR/AlgR family Transcription / Signal transduction mechanisms 26990090 Common endA-2 endonuclease I PP_3375 36 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 26988685 Common - hypothetical protein PP_1958 2 None None None 26987022 Common - amino acid ABC transporter, permease protein PP_0280 172 COG4160 ArtM, ABC-type arginine/histidine transport system, permease component Amino acid transport and metabolism 26988596 Common - phospho-2-dehydro-3-deoxyheptonate aldolase, class II PP_1866 73 COG3200 AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 26989702 Common - hypothetical protein PP_2983 3 None None None 26990004 Common phaN phenylacetic acid degradation transcriptional repressor PP_3286 33 COG3327 PaaX, Phenylacetic acid-responsive transcriptional repressor Transcription 26989797 Common - ABC transporter, periplasmic binding protein, putative PP_3078 115 COG4166 OppA, ABC-type oligopeptide transport system, periplasmic component Amino acid transport and metabolism 26991796 Common - conifer aldehyde dehydrogenase, putative PP_5120 219 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26989496 Common - acyl carrier protein, putative PP_2777 8 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26991013 Common ccmE cytochrome c-type biogenesis protein CcmE PP_4323 94 COG2332 CcmE, Cytochrome c-type biogenesis protein CcmE Posttranslational modification, protein turnover, chaperones 26989993 Common phaH ring-hydroxylation complex protein 3 PP_3275 42 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 26989327 Common - shikimate dehydrogenase family protein PP_2608 200 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 26989146 Common - hypothetical protein PP_2423 36 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 26986792 Common - DNA-binding heavy metal response regulator, putative PP_0047 223 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26989470 Common - hypothetical protein PP_2751 30 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26987799 Common metR-1 transcriptional activator MetR PP_1063 174 COG0583 LysR, Transcriptional regulator Transcription 26988240 Common - hypothetical protein PP_1508 1 None None None 26990382 Common - oxidoreductase, aldo/keto reductase family PP_3671 190 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 26990423 Common catB muconate cycloisomerase PP_3715 142 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 26991017 Common ccmA heme ABC export system, ATP-binding protein CcmA PP_4327 249 COG4133 CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component Posttranslational modification, protein turnover, chaperones 26991414 Common omlA outer membrane lipoprotein OmlA PP_4731 64 COG2913 SmpA, Small protein A (tmRNA-binding) Translation, ribosomal structure and biogenesis 26986904 Common - ferrioxamine receptor, putative PP_0160 118 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26991897 Common - hypothetical protein PP_5221 95 COG1671 COG1671, Uncharacterized protein conserved in bacteria Function unknown 26988220 Common - hypothetical protein PP_1487 37 COG2979 COG2979, Uncharacterized protein conserved in bacteria Function unknown 26990908 Common pvdE pyoverdine ABC export system, permease/ATP-binding protein PP_4216 248 COG4615 PvdE, ABC-type siderophore export system, fused ATPase and permease components Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism 26991085 Common - hypothetical protein PP_4396 2 COG3418 COG3418, Flagellar biosynthesis/type III secretory pathway chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 26986755 Common dnaA chromosomal replication initiation protein PP_0010 213 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 26989507 Common - transcriptional regulator, MerR family PP_2788 136 COG0789 SoxR, Predicted transcriptional regulators Transcription 26987793 Common - transcriptional regulator, PadR family PP_1057 56 COG1695 COG1695, Predicted transcriptional regulators Transcription 26987938 Common dinP DNA polymerase IV PP_1203 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 26989532 Common - BNR domain protein PP_2813 38 COG4447 COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor General function prediction only 26989541 Nonpathogen - hypothetical protein PP_2822 1 None None None 26987081 Common aceE pyruvate dehydrogenase subunit E1 PP_0339 130 COG2609 AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component Energy production and conversion 26989674 Common - magnesium/cobalt transporter, CorA family PP_2955 32 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 26990536 Common - hypothetical protein PP_3831 45 COG3569 COG3569, Topoisomerase IB DNA replication, recombination, and repair 26988367 Common - DNA-binding response regulator PP_1635 197 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26988376 Common wrbA trp repressor binding protein PP_1644 117 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 26991090 Common bkdA1 2-oxoisovalerate dehydrogenase, alpha subunit PP_4401 153 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 26987529 Common fruB phosphotransferase system, fructose-specific EI/HPr/EIIA components PP_0793 235 COG1080 PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) Carbohydrate transport and metabolism 26989628 Common - hypothetical protein PP_2909 12 None None None 26991787 Common ftsY signal recognition particle receptor FtsY PP_5111 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 26988703 Common gltX glutamyl-tRNA synthetase PP_1977 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 26989836 Common - cell division inhibitor SulA, putative PP_3117 36 COG4544 COG4544, Uncharacterized conserved protein Function unknown 26990124 Common - hypothetical protein PP_3411 24 COG3813 COG3813, Uncharacterized protein conserved in bacteria Function unknown 26990580 Common - hypothetical protein PP_3875 2 None None None 26987851 Common - lipoprotein, putative PP_1115 5 COG5608 COG5608, Conserved secreted protein Function unknown 26991961 Common coaBC bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase PP_5285 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 26991120 Common - peptidase, M24 family protein PP_4432 144 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 26990329 Nonpathogen - hypothetical protein PP_3618 1 None None None 26991322 Common - methylenetetrahydrofolate reductase domain protein PP_4638 11 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 26989739 Common - serine/threonine protein phosphatase, putative PP_3020 65 COG3855 Fbp, Uncharacterized protein conserved in bacteria Carbohydrate transport and metabolism 26989593 Common - hypothetical protein PP_2874 1 None None None 26989966 Common - Dyp-type peroxidase family protein PP_3248 48 COG2837 COG2837, Predicted iron-dependent peroxidase Inorganic ion transport and metabolism 26990874 Nonpathogen - hypothetical protein PP_4182 1 None None None 26989332 Nonpathogen - hypothetical protein PP_2613 1 None None None 26990862 Nonpathogen - hypothetical protein PP_4170 1 None None None 26991422 Common - hypothetical protein PP_4739 1 None None None 26991464 Common hemL glutamate-1-semialdehyde aminotransferase PP_4784 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 26987218 Common rpsK 30S ribosomal protein S11 PP_0477 247 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 26989256 Common - glutathione S-transferase family protein PP_2536 99 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26988264 Common - phage integrase, putative PP_1532 25 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 26988410 Common cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase PP_1678 126 COG2087 CobU, Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase Coenzyme metabolism 26988955 Common - hypothetical protein PP_2231 116 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26990707 Common - recombination factor protein RarA PP_4002 240 COG2256 MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase DNA replication, recombination, and repair 26988062 Common - hypothetical protein PP_1328 135 COG2001 COG2001, Uncharacterized protein conserved in bacteria Function unknown 26990410 Nonpathogen - hypothetical protein PP_3702 1 None None None 26991584 Common - hypothetical protein PP_4906 2 None None None 26987366 Common - zinc-binding protein PP_0630 61 COG3024 COG3024, Uncharacterized protein conserved in bacteria Function unknown 26988583 Common - transcriptional regulator, LysR family PP_1853 171 COG0583 LysR, Transcriptional regulator Transcription 26987093 Common - transmembrane sensor protein, putative PP_0351 41 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26991625 Common putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase PP_4947 220 COG4230 COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase Energy production and conversion 26987422 Common phnA phnA protein PP_0686 84 COG2824 PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism Inorganic ion transport and metabolism 26991217 Common - ATP-dependent RNA helicase, DEAD box family PP_4532 241 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 26988257 Common dapE succinyl-diaminopimelate desuccinylase PP_1525 198 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 26988495 Common - phosphoglycolate phosphatase PP_1764 201 COG0546 Gph, Predicted phosphatases General function prediction only 26987792 Common - iron-chelator utilization protein, putative PP_1056 63 COG2375 ViuB, Siderophore-interacting protein Inorganic ion transport and metabolism 26990260 Common - drug resistance transporter, EmrB/QacA family PP_3548 196 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989115 Common - major facilitator family transporter PP_2392 93 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988069 Common murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase PP_1335 208 COG0771 MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase Cell envelope biogenesis, outer membrane 26989935 Common - periplasmic aliphatic sulfonate-binding protein, putative PP_3217 88 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26989091 Common - major facilitator family transporter PP_2367 165 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988316 Common - hypothetical protein PP_1584 1 None None None 26990915 Common - diaminobutyrate--2-oxoglutarate aminotransferase PP_4223 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 26986827 Common trpA tryptophan synthase subunit alpha PP_0082 218 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 26991770 Common - hypothetical protein PP_5094 199 COG0325 COG0325, Predicted enzyme with a TIM-barrel fold General function prediction only 26988680 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_1953 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991075 Common flgF flagellar basal body rod protein FlgF PP_4386 122 COG4787 FlgF, Flagellar basal body rod protein Cell motility and secretion 26989351 Common - hypothetical protein PP_2632 18 None None None 26987289 Common - MORN domain protein PP_0551 33 COG4642 COG4642, Uncharacterized protein conserved in bacteria Function unknown 26990453 Common glcF glycolate oxidase iron-sulfur subunit PP_3747 171 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 26991544 Common - branched-chain amino acid ABC transporter, ATP-binding protein PP_4864 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26990700 Common - hypothetical protein PP_3995 2 COG2168 DsrH, Uncharacterized conserved protein involved in oxidation of intracellular sulfur Inorganic ion transport and metabolism 26990451 Common glcD glycolate oxidase subunit GlcD PP_3745 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 26991099 Nonpathogen - hypothetical protein PP_4411 1 None None None 26987214 Common rplO 50S ribosomal protein L15 PP_0473 213 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 26989185 Common - hypothetical protein PP_2462 9 None None None 26991374 Common - Rieske 2Fe-2S family protein PP_4690 41 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 26987277 Common - hypothetical protein PP_0539 57 COG3228 COG3228, Uncharacterized protein conserved in bacteria Function unknown 26991301 Common - leucine dehydrogenase PP_4617 142 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 26989927 Common - oxidoreductase, Pdr/VanB family PP_3208 111 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26989144 Common - acetyltransferase, GNAT family PP_2421 31 COG0456 RimI, Acetyltransferases General function prediction only 26989989 Common phaK phenylacetic acid-specific porin PP_3271 10 None None None 26987750 Common - hypothetical protein PP_1014 29 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 26988011 Nonpathogen - hypothetical protein PP_1276 1 None None None 26990729 Common - ISPpu15, transposase Orf2 PP_4025 66 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989122 Common - hypothetical protein PP_2399 13 COG3219 COG3219, Uncharacterized protein conserved in bacteria Function unknown 26986971 Common - serine O-acetyltransferase, putative PP_0228 190 COG1045 CysE, Serine acetyltransferase Amino acid transport and metabolism 26988657 Common arsB-1 arsenite efflux transporter PP_1929 108 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 26991324 Common - hypothetical protein PP_4640 27 COG2879 COG2879, Uncharacterized small protein Function unknown 26988995 Nonpathogen - hypothetical protein PP_2271 1 None None None 26989880 Common benA benzoate dioxygenase, alpha subunit PP_3161 81 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 26990851 Common kdpD sensor protein KdpD PP_4158 217 COG2205 KdpD, Osmosensitive K+ channel histidine kinase Signal transduction mechanisms 161378123 Common fliG flagellar motor switch protein G PP_4368 125 COG1536 FliG, Flagellar motor switch protein Cell motility and secretion 26991829 Common - fumarylacetoacetate hydrolase family protein PP_5153 179 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 26988487 Common - hypothetical protein PP_1756 12 COG3184 COG3184, Uncharacterized protein conserved in bacteria Function unknown 26990020 Common - RND efflux transporter PP_3302 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26987242 Common - major facilitator family transporter PP_0503 84 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989195 Common - hypothetical protein PP_2472 101 COG0789 SoxR, Predicted transcriptional regulators Transcription 26991270 Common - hypothetical protein PP_4586 2 COG3975 COG3975, Predicted protease with the C-terminal PDZ domain General function prediction only 26991595 Common - icc protein PP_4917 81 COG1409 Icc, Predicted phosphohydrolases General function prediction only 26989359 Common - acetyltransferase, GNAT family PP_2640 20 COG0456 RimI, Acetyltransferases General function prediction only 26986902 Common gcdH glutaryl-CoA dehydrogenase PP_0158 162 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26989107 Common - transcriptional regulator, AraC family PP_2383 149 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26989787 Common - hypothetical protein PP_3068 1 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26989984 Common - hypothetical protein PP_3266 99 COG1801 COG1801, Uncharacterized conserved protein Function unknown 26986791 Common - porin, putative PP_0046 9 None None None 26988004 Common - universal stress protein family PP_1269 3 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26990411 Nonpathogen - hypothetical protein PP_3703 1 None None None 26991802 Common - hypothetical protein PP_5126 60 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 26992004 Common pstC phosphate ABC transporter, permease protein PP_5328 222 COG4590 COG4590, ABC-type uncharacterized transport system, permease component General function prediction only 26988180 Common - hypothetical protein PP_1447 36 COG4628 COG4628, Uncharacterized conserved protein Function unknown 26987884 Common - hypothetical protein PP_1148 1 None None None 26988755 Common - hypothetical protein PP_2030 1 None None None 26988960 Common - prolyl oligopeptidase family protein PP_2236 6 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 26987069 Common purU-1 formyltetrahydrofolate deformylase PP_0327 219 COG0788 PurU, Formyltetrahydrofolate hydrolase Nucleotide transport and metabolism 26990074 Common - hydroxycinnamic acid degradation regulator, putative PP_3359 99 COG1846 MarR, Transcriptional regulators Transcription 26987430 Common - hypothetical protein PP_0694 7 None None None 26989429 Common - hypothetical protein PP_2710 23 None None None 26989756 Common - C4-type zinc finger protein, DksA/TraR family PP_3037 8 COG1734 DksA, DnaK suppressor protein Signal transduction mechanisms 26986939 Common - hypothetical protein PP_0195 16 COG5589 COG5589, Uncharacterized conserved protein Function unknown 26988518 Nonpathogen - hypothetical protein PP_1787 1 None None None 26989571 Common - sulfatase domain protein, putative PP_2852 52 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 26989376 Common - phosphate ABC transporter, permease protein PP_2657 225 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 26990094 Common - epimerase KguE, putative PP_3379 14 None None None 26990279 Common - transcriptional regulator, LysR family PP_3567 149 COG0583 LysR, Transcriptional regulator Transcription 26987891 Common - YaiC/YhcK/ArdA family protein PP_1155 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26989853 Common - hypothetical protein PP_3134 153 COG0110 WbbJ, Acetyltransferase (isoleucine patch superfamily) General function prediction only 26987179 Common - pantothenate kinase PP_0438 117 COG1521 COG1521, Putative transcriptional regulator, homolog of Bvg accessory factor Transcription 26988424 Common - hypothetical protein PP_1692 1 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26990727 Common - hypothetical protein PP_4022 10 None None None 26987844 Common - acylase, penicillin amidase family PP_1108 75 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 26991279 Common - transcriptional regulator, AsnC family PP_4595 153 COG1522 Lrp, Transcriptional regulators Transcription 26990493 Common - non-ribosomal peptide synthetase, putative PP_3788 209 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 26990186 Common - curli assembly protein CsgE PP_3474 8 None None None 26991757 Common - type IV pili biogenesis protein PP_5081 2 COG3168 PilP, Tfp pilus assembly protein PilP Cell motility and secretion / Intracellular trafficking and secretion 26989493 Common - glycine betaine/L-proline ABC transporter, ATPase/permease fusion protein, putative PP_2774 249 COG4175 ProV, ABC-type proline/glycine betaine transport system, ATPase component Amino acid transport and metabolism 26991930 Common - hypothetical protein PP_5254 7 COG3224 COG3224, Uncharacterized protein conserved in bacteria Function unknown 26989631 Common - hypothetical protein PP_2912 66 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 26987437 Common - MFS efflux transporter, putative PP_0701 126 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991874 Common - hypothetical protein PP_5198 18 None None None 26991097 Nonpathogen - site-specific recombinase, phage integrase family PP_4409 3 None None None 26988936 Common - leucine-rich repeat domain protein PP_2212 14 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 26989515 Common - hypothetical protein PP_2796 34 COG3162 COG3162, Predicted membrane protein Function unknown 26989129 Common aroE shikimate 5-dehydrogenase PP_2406 202 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 26987477 Common - hypothetical protein PP_0741 74 COG3272 COG3272, Uncharacterized conserved protein Function unknown 26989134 Common - major facilitator family transporter PP_2411 144 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991769 Common pilT type IV pili twitching motility protein PilT PP_5093 215 COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT Cell motility and secretion / Intracellular trafficking and secretion 26988476 Common - short chain dehydrogenase PP_1745 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26987900 Common - hypothetical protein PP_1165 21 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 26989308 Common - aldehyde dehydrogenase family protein PP_2589 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26988790 Common - multidrug efflux RND transporter PP_2065 176 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26989559 Common - hypothetical protein PP_2840 54 COG3213 NnrS, Uncharacterized protein involved in response to NO Inorganic ion transport and metabolism 26988502 Common cmk cytidylate kinase PP_1771 206 COG0283 Cmk, Cytidylate kinase Nucleotide transport and metabolism 26990364 Common - transporter, LysE family PP_3653 15 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26989922 Common - major facilitator family transporter PP_3203 19 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990264 Common - sensory box histidine kinase PP_3552 178 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26992030 Common - hypothetical protein PP_5354 7 None None None 26989552 Common - transcriptional regulator, LysR family PP_2833 181 COG0583 LysR, Transcriptional regulator Transcription 26990180 Common - sigma-54 dependent transcriptional regulator PP_3467 175 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 26990553 Nonpathogen - hypothetical protein PP_3848 1 None None None 26988869 Common nagZ beta-hexosaminidase PP_2145 181 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 26988534 Common wbpL glycosyl transferase WbpL PP_1804 80 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 26989222 Common - hypothetical protein PP_2499 14 COG3905 COG3905, Predicted transcriptional regulator Transcription 26987539 Common - protein secretion ABC efflux system, membrane fusion protein PP_0803 128 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26991904 Common dapF diaminopimelate epimerase PP_5228 203 COG0253 DapF, Diaminopimelate epimerase Amino acid transport and metabolism 26987523 Common nadC nicotinate-nucleotide pyrophosphorylase PP_0787 205 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 26990649 Common nahG salicylate hydroxylase PP_3944 85 COG0654 UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases Coenzyme metabolism / Energy production and conversion 26991325 Common cstA carbon starvation protein CstA PP_4641 109 COG1966 CstA, Carbon starvation protein, predicted membrane protein Signal transduction mechanisms 26988556 Common - hydrolase, isochorismatase family PP_1826 107 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26989240 Common - BenF-like porin PP_2517 6 None None None 26987707 Common - hypothetical protein PP_0971 10 COG3631 COG3631, Ketosteroid isomerase-related protein General function prediction only 26988806 Common - hypothetical protein PP_2081 113 COG1806 COG1806, Uncharacterized protein conserved in bacteria Function unknown 26990043 Common - outer membrane ferric siderophore receptor, putative PP_3325 114 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26988039 Common cysNC bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein PP_1304 249 COG2895 CysN, GTPases - Sulfate adenylate transferase subunit 1 Inorganic ion transport and metabolism 26988845 Common - lipoprotein, putative PP_2121 2 None None None 26988053 Common petB ubiquinol--cytochrome c reductase, cytochrome b PP_1318 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 26988572 Common - amidotransferase PP_1842 169 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 26987726 Common - hypothetical protein PP_0990 22 COG2259 COG2259, Predicted membrane protein Function unknown 26989042 Common - lipase, GDSL family PP_2318 103 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 26989066 Nonpathogen - hypothetical protein PP_2342 1 None None None 26988554 Common - Smr domain protein PP_1824 102 COG2840 COG2840, Uncharacterized protein conserved in bacteria Function unknown 26989437 Common arsR-2 arsenic resistance transcriptional regulator PP_2718 136 COG0640 ArsR, Predicted transcriptional regulators Transcription 26989607 Common - ECF sigma factor PrtI, putative PP_2888 116 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26986972 Common - choline/carnitine/betaine transporter family protein PP_0229 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 26990671 Common - ISPpu14, transposase Orf1 PP_3966 19 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987153 Common - polyamine ABC transporter, periplasmic polyamine-binding protein PP_0412 90 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26990627 Common - predicted inner membrane peptidase PP_3922 185 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26986899 Common - acetyl-CoA hydrolase/transferase family protein PP_0154 96 COG0427 ACH1, Acetyl-CoA hydrolase Energy production and conversion 26989943 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein PP_3225 225 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 26989601 Common - 2-hydroxychromene-2-carboxylate isomerase, putative PP_2882 46 COG3917 NahD, 2-hydroxychromene-2-carboxylate isomerase Secondary metabolites biosynthesis, transport, and catabolism 26988529 Common gmd GDP-mannose 4,6 dehydratase PP_1799 219 COG1089 Gmd, GDP-D-mannose dehydratase Cell envelope biogenesis, outer membrane 26990398 Nonpathogen - hypothetical protein PP_3690 1 None None None 26992074 Common - hypothetical protein PP_5399 4 None None None 26989713 Common - oxidoreductase, FMN-binding PP_2994 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26991315 Common - hypothetical protein PP_4631 28 COG3224 COG3224, Uncharacterized protein conserved in bacteria Function unknown 26986877 Common - sensory box histidine kinase PP_0132 220 COG5002 VicK, Signal transduction histidine kinase Signal transduction mechanisms 26989504 Common - hypothetical protein PP_2785 13 None None None 26988489 Common - hypothetical protein PP_1758 107 COG1054 COG1054, Predicted sulfurtransferase General function prediction only 26988461 Common - hypothetical protein PP_1729 1 None None None 26989907 Common - hypothetical protein PP_3188 33 COG2508 COG2508, Regulator of polyketide synthase expression Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism 26989345 Common - hypothetical protein PP_2626 19 None None None 26987907 Nonpathogen - hypothetical protein PP_1172 1 None None None 26989885 Common - catechol 1,2-dioxygenase PP_3166 47 COG3485 PcaH, Protocatechuate 3,4-dioxygenase beta subunit Secondary metabolites biosynthesis, transport, and catabolism 26991194 Common - hypothetical protein PP_4509 21 COG4323 COG4323, Predicted membrane protein Function unknown 26990544 Common - alcohol dehydrogenase PP_3839 212 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 26991488 Common - hypothetical protein PP_4808 166 COG1576 COG1576, Uncharacterized conserved protein Function unknown 26987106 Common bioH biotin biosynthesis protein BioH PP_0364 56 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26987414 Common - hypothetical protein PP_0678 21 None None None 26990954 Common - hypothetical protein PP_4263 29 COG2836 COG2836, Uncharacterized conserved protein Function unknown 26987259 Common - hypothetical protein PP_0521 7 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26986884 Common - lipoprotein, putative PP_0139 28 COG3218 COG3218, ABC-type uncharacterized transport system, auxiliary component General function prediction only 26987024 Common - amino acid ABC transporter, periplasmic amino acid-binding protein PP_0282 178 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26987694 Common ttg2A toluene tolerance ABC efflux transporter, ATP-binding protein PP_0958 249 COG1127 Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component Secondary metabolites biosynthesis, transport, and catabolism 26988391 Common - hypothetical protein PP_1659 11 None None None 26987493 Common - hypothetical protein PP_0757 24 None None None 26988096 Common pykA pyruvate kinase PP_1362 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 26988626 Common - ABC transporter, permease protein PP_1896 132 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 26990357 Common - aldehyde dehydrogenase family protein PP_3646 222 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26991706 Common hutI imidazolonepropionase PP_5030 117 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 26989006 Nonpathogen - minor capsid protein 10 PP_2282 3 None None None 26986911 Common - toxin secretion ATP-binding protein PP_0167 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 26988172 Common - hypothetical protein PP_1439 1 None None None 26987714 Common - hypothetical protein PP_0978 1 None None None 26991675 Common pyrB aspartate carbamoyltransferase catalytic subunit PP_4998 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 26987915 Nonpathogen - hypothetical protein PP_1180 1 None None None 26989659 Common - hypothetical protein PP_2940 45 COG2161 StbD, Antitoxin of toxin-antitoxin stability system Cell division and chromosome partitioning 26988834 Common - hypothetical protein PP_2109 1 None None None 26987189 Common rpoC DNA-directed RNA polymerase subunit beta' PP_0448 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 26989394 Common - cytochrome c-type protein PP_2675 14 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion 26991004 Common - peptidyl-prolyl cis-trans isomerase, FkbP-type PP_4313 150 COG0545 FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 Posttranslational modification, protein turnover, chaperones 26988505 Nonpathogen - hypothetical protein PP_1774 1 None None None 26989181 Common rbsK ribokinase PP_2458 213 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 26988440 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_1708 234 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 26988040 Common - Pyocin S-type immunity protein, putative PP_1305 8 None None None 26990763 Nonpathogen - hypothetical protein PP_4062 1 None None None 26989380 Nonpathogen - hypothetical protein PP_2661 2 COG1877 OtsB, Trehalose-6-phosphatase Carbohydrate transport and metabolism 26990289 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_3577 41 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26989188 Common thrS threonyl-tRNA synthetase PP_2465 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26991203 Common - hypothetical protein PP_4518 53 COG2832 COG2832, Uncharacterized protein conserved in bacteria Function unknown 26986754 Common rpmH 50S ribosomal protein L34 PP_0009 196 None None None 26991245 Common - hypothetical protein PP_4561 31 COG3237 COG3237, Uncharacterized protein conserved in bacteria Function unknown 26991218 Common - hypothetical protein PP_4533 59 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 26987864 Common - OmpA family protein PP_1128 121 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26989032 Common - acyl-CoA thioesterase II, putative PP_2308 39 COG1946 TesB, Acyl-CoA thioesterase Lipid metabolism 26986774 Common czrR-1 DNA-binding response regulator CzrR PP_0029 219 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26986826 Common - hypothetical protein PP_0081 17 COG3805 DodA, Aromatic ring-cleaving dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26987385 Common - MutT/nudix family protein PP_0649 5 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26990339 Common - choline/carnitine/betaine transporter family protein PP_3628 96 COG1292 BetT, Choline-glycine betaine transporter Cell envelope biogenesis, outer membrane 26991860 Common - glutamine synthetase, putative PP_5184 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26991237 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_4553 42 COG4941 COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain Transcription 26988223 Common - methyltransferase, CheR-like PP_1490 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 26986787 Common - hypothetical protein PP_0042 1 None None None 26986954 Common - phycobiliprotein, putative PP_0210 11 COG1413 COG1413, FOG: HEAT repeat Energy production and conversion 26988919 Common - periplasmic polyamine-binding protein, putative PP_2195 125 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26991568 Common hisZ ATP phosphoribosyltransferase regulatory subunit PP_4890 166 COG3705 HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis Amino acid transport and metabolism 26990655 Common - methyl-accepting chemotaxis transducer PP_3950 148 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26988468 Common - hypothetical protein PP_1737 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 26990514 Nonpathogen - hypothetical protein PP_3809 1 None None None 26991467 Common - PhoH family protein PP_4787 199 COG1702 PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase Signal transduction mechanisms 26989478 Common - ribose ABC transporter, ATP-binding protein, putative PP_2759 249 COG1129 MglA, ABC-type sugar transport system, ATPase component Carbohydrate transport and metabolism 26991290 Common - outer membrane ferric siderophore receptor, putative PP_4606 114 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26987877 Common braC branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein PP_1141 144 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26991651 Common - hypothetical protein PP_4973 46 COG2510 COG2510, Predicted membrane protein Function unknown 26990487 Nonpathogen - hypothetical protein PP_3782 1 None None None 26991658 Common - hypothetical protein PP_4981 121 COG2353 COG2353, Uncharacterized conserved protein Function unknown 26986767 Nonpathogen - hypothetical protein PP_0022 1 None None None 26989409 Common - hypothetical protein PP_2690 6 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 26986957 Common gabT 4-aminobutyrate aminotransferase PP_0214 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 26989165 Common - hypothetical protein PP_2442 41 COG3132 COG3132, Uncharacterized protein conserved in bacteria Function unknown 26991633 Common - hypothetical protein PP_4955 31 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26991386 Common acsB acetyl-CoA synthetase PP_4702 213 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 26988202 Common dsbC thiol:disulfide interchange protein DsbC PP_1469 66 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 26988375 Common - hypothetical protein PP_1643 3 COG3308 COG3308, Predicted membrane protein Function unknown 26990690 Common - ISPpu13, transposase Orf2 PP_3985 67 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987426 Common obgE GTPase ObgE PP_0690 249 COG0536 Obg, Predicted GTPase General function prediction only 26989249 Nonpathogen - hypothetical protein PP_2529 1 COG4907 COG4907, Predicted membrane protein Function unknown 26990886 Common gltA type II citrate synthase PP_4194 194 COG0372 GltA, Citrate synthase Energy production and conversion 26991955 Common - hypothetical protein PP_5279 33 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 26988136 Common dctB C4-dicarboxylate transport sensor protein PP_1402 221 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26987488 Nonpathogen - hypothetical protein PP_0752 1 None None None 26990602 Nonpathogen - hypothetical protein PP_3897 1 None None None 26989954 Nonpathogen - lipoprotein OprI, putative PP_3236 1 None None None 26990491 Common - aminotransferase PP_3786 240 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26991343 Common ggt-2 gamma-glutamyltransferase PP_4659 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 26987530 Common fruK 1-phosphofructokinase PP_0794 120 COG1105 FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) Carbohydrate transport and metabolism 26991163 Common astB succinylarginine dihydrolase PP_4477 34 COG3724 AstB, Succinylarginine dihydrolase Amino acid transport and metabolism 26992029 Common - hypothetical protein PP_5353 28 COG4395 COG4395, Uncharacterized protein conserved in bacteria Function unknown 26991300 Common - hypothetical protein PP_4616 8 COG3141 COG3141, Uncharacterized protein conserved in bacteria Function unknown 26988089 Common ampG muropeptide permease AmpG PP_1355 101 None None None 26988339 Common accA acetyl-CoA carboxylase carboxyltransferase subunit alpha PP_1607 183 COG0825 AccA, Acetyl-CoA carboxylase alpha subunit Lipid metabolism 26990743 Common zwf-2 glucose-6-phosphate 1-dehydrogenase PP_4042 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 26991979 Common - endoribonuclease PP_5303 189 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26991178 Common - hypothetical protein PP_4492 39 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990270 Common - amino acid transporter, periplasmic amino acid-binding protein, putative PP_3558 67 COG2113 ProX, ABC-type proline/glycine betaine transport systems, periplasmic components Amino acid transport and metabolism 26989215 Common - butanol dehydrogenase, NADH-dependent, putative PP_2492 168 COG1979 COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family Energy production and conversion 26987532 Common - hypothetical protein PP_0796 42 COG3530 COG3530, Uncharacterized protein conserved in bacteria Function unknown 26989177 Common rbsB ribose ABC transporter, periplasmic ribose-binding protein PP_2454 115 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 26990292 Common - hypothetical protein PP_3580 1 None None None 26992089 Common atpG F0F1 ATP synthase subunit gamma PP_5414 208 COG0224 AtpG, F0F1-type ATP synthase, gamma subunit Energy production and conversion 26986807 Common tag DNA-3-methyladenine glycosidase I PP_0062 132 COG2818 Tag, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 26987973 Common - lipoprotein, putative PP_1238 30 COG3317 NlpB, Uncharacterized lipoprotein Cell envelope biogenesis, outer membrane 26988799 Common - transcriptional regulator, LysR family PP_2074 115 COG0583 LysR, Transcriptional regulator Transcription 26990566 Common - phage FluMu protein gp46 PP_3861 12 COG4381 COG4381, Mu-like prophage protein gp46 Function unknown 26990476 Common - hypothetical protein PP_3771 2 None None None 26990408 Common - hypothetical protein PP_3700 4 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 26987988 Common - transcriptional regulator, ArsR family PP_1253 35 COG0640 ArsR, Predicted transcriptional regulators Transcription 26987006 Common - sensor histidine kinase PP_0264 185 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26988088 Common - multidrug efflux MFS transporter, putative PP_1354 148 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987328 Common - transcriptional regulator, ArsR family PP_0590 35 COG0640 ArsR, Predicted transcriptional regulators Transcription 26990199 Common - hypothetical protein PP_3487 46 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 26991008 Nonpathogen - hypothetical protein PP_4317 1 None None None 26989845 Common - polysaccharide export protein, putative PP_3126 120 COG1596 Wza, Periplasmic protein involved in polysaccharide export Cell envelope biogenesis, outer membrane 26990982 Common - hypothetical protein PP_4291 18 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 26990803 Common - 4-aminobutyrate aminotransferase, putative PP_4108 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 26988258 Common - beta-(1-3)-glucosyl transferase, putative PP_1526 129 COG5309 COG5309, Exo-beta-1,3-glucanase Carbohydrate transport and metabolism 26989368 Common - transcriptional regulator, LysR family PP_2649 174 COG0583 LysR, Transcriptional regulator Transcription 26991511 Common cbiD cobalt-precorrin-6A synthase PP_4831 83 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 26987481 Common uraA uracil transporter PP_0745 122 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 26989233 Nonpathogen - hypothetical protein PP_2510 1 None None None 26990464 Common - methylesterase, CheB-like PP_3759 149 COG2201 CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cell motility and secretion / Signal transduction mechanisms 26987463 Common - hypothetical protein PP_0727 127 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 26987191 Common rpsG 30S ribosomal protein S7 PP_0450 249 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 26990607 Nonpathogen - hypothetical protein PP_3902 1 None None None 26987408 Common - sensory box protein PP_0672 195 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26987787 Common xcpV type II secretion pathway protein XcpV PP_1051 1 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26992080 Common - transposase, TnsB-related protein PP_5405 14 None None None 26989013 Nonpathogen - hypothetical protein PP_2289 1 None None None 26987237 Common - transcriptional regulator, Cro/CI family PP_0497 11 None None None 26990845 Common - hypothetical protein PP_4152 34 None None None 26988549 Common - methyl-accepting chemotaxis transducer PP_1819 133 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26991299 Common - hypothetical protein PP_4615 16 COG3223 COG3223, Predicted membrane protein Function unknown 26988776 Common atoB acetyl-CoA acetyltransferase PP_2051 167 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26988106 Common - hypothetical protein PP_1372 76 COG0433 COG0433, Predicted ATPase General function prediction only 26987569 Common tgt queuine tRNA-ribosyltransferase PP_0833 231 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 26992044 Common - major facilitator family transporter PP_5368 103 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26988961 Common - hypothetical protein PP_2237 6 None None None 26991948 Common - hypothetical protein PP_5272 9 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 26991047 Common fliM flagellar motor switch protein FliM PP_4358 112 COG1868 FliM, Flagellar motor switch protein Cell motility and secretion 26987094 Common - RNA polymerase sigma factor PP_0352 59 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26988056 Common sspB ClpXP protease specificity-enhancing factor PP_1321 65 COG2969 SspB, Stringent starvation protein B General function prediction only 26989811 Common - hypothetical protein PP_3092 44 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 26987996 Common - 2-hydroxyacid dehydrogenase PP_1261 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 26987044 Common - 3-hydroxybutyryl-CoA dehydrogenase PP_0302 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 26988298 Common - head maturation protease, putative PP_1566 42 COG3740 COG3740, Phage head maturation protease General function prediction only 26990844 Common - excisionase domain protein PP_4151 30 None None None 26988337 Common rnhB ribonuclease HII PP_1605 239 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 26991158 Common csrA carbon storage regulator CsrA PP_4472 77 COG1551 CsrA, Carbon storage regulator (could also regulate swarming and quorum sensing) Signal transduction mechanisms 26991684 Common - polyhydroxyalkanoate granule-associated protein GA2 PP_5007 16 COG3937 COG3937, Uncharacterized conserved protein Function unknown 26990229 Common - hypothetical protein PP_3517 18 None None None 26987039 Common sda-1 L-serine dehydratase, iron-sulfur-dependent, single chain form PP_0297 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 26988026 Common - PhoH family protein PP_1291 199 COG1875 COG1875, Predicted ATPase related to phosphate starvation-inducible protein PhoH Signal transduction mechanisms 26987829 Common - hypothetical protein PP_1093 1 COG4660 RnfE, Predicted NADH:ubiquinone oxidoreductase, subunit RnfE Energy production and conversion 26989549 Common - major facilitator family transporter PP_2830 88 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26989583 Common - hypothetical protein PP_2864 16 COG2315 MmcQ, Uncharacterized protein conserved in bacteria Function unknown 26991052 Common - sensor histidine kinase/response regulator PP_4363 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26989174 Common endA-1 endonuclease I PP_2451 30 COG2356 EndA, Endonuclease I DNA replication, recombination, and repair 26987597 Common - outer membrane ferric siderophore receptor PP_0861 115 COG4774 Fiu, Outer membrane receptor for monomeric catechols Inorganic ion transport and metabolism 26991969 Common - hypothetical protein PP_5293 8 COG3296 COG3296, Uncharacterized protein conserved in bacteria Function unknown 26987253 Common ribE-1 riboflavin synthase subunit alpha PP_0515 209 COG0307 RibC, Riboflavin synthase alpha chain Coenzyme metabolism 26987057 Common - Rieske 2Fe-2S family protein PP_0315 82 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 26990007 Common - acetyltransferase, GNAT family PP_3289 95 COG1247 COG1247, Sortase and related acyltransferases Cell envelope biogenesis, outer membrane 26987310 Common pbpC penicillin-binding protein 1C PP_0572 200 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 26990986 Common - transcriptional regulator, TetR family PP_4295 120 COG1309 AcrR, Transcriptional regulator Transcription 26988494 Common - short chain dehydrogenase PP_1763 180 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26988715 Common asd aspartate-semialdehyde dehydrogenase PP_1989 200 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 26988974 Common - transcriptional regulator, LysR family PP_2250 146 COG0583 LysR, Transcriptional regulator Transcription 26990222 Common - hypothetical protein PP_3510 8 None None None 26988971 Common - endoribonuclease, putative PP_2247 180 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26990588 Common - phage holin, putative PP_3883 24 COG1403 McrA, Restriction endonuclease Defense mechanisms 26987544 Common hmpA nitric oxide dioxygenase PP_0808 134 COG1017 Hmp, Hemoglobin-like flavoprotein Energy production and conversion 26989288 Common - ring-cleaving dioxygenase PP_2568 23 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 26990970 Common xdhB xanthine dehydrogenase, XdhB subunit PP_4279 110 COG4631 XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit B Nucleotide transport and metabolism 26991083 Common flgA flagellar basal body P-ring biosynthesis protein FlgA PP_4394 69 COG1261 FlgA, Flagellar basal body P-ring biosynthesis protein Cell motility and secretion / Posttranslational modification, protein turnover, chaperones 26989446 Common - C-factor, putative PP_2727 63 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26990634 Nonpathogen - hypothetical protein PP_3929 1 None None None 26987005 Common - sigma-54 dependent response regulator PP_0263 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990315 Nonpathogen - hypothetical protein PP_3604 1 None None None 26987321 Common - transcriptional regulator, AraC family PP_0583 70 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26990012 Common - universal stress protein family PP_3294 31 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26991361 Common pssA-2 CDP-diacylglycerol--serine O-phosphatidyltransferase PP_4677 135 COG1183 PssA, Phosphatidylserine synthase Lipid metabolism 26991226 Common - ABC transporter, ATP-binding protein/permease protein, putative PP_4542 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26991380 Common - nitrogen regulation protein NR(I) PP_4696 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26988540 Nonpathogen - hypothetical protein PP_1810 1 None None None 26987612 Common - transcriptional regulator, AraC family PP_0876 52 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26992047 Common - rubredoxin/rubredoxin reductase PP_5371 232 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 26990581 Nonpathogen - hypothetical protein PP_3876 1 None None None 26989100 Common cti esterified fatty acid cis/trans isomerase PP_2376 15 None None None 26990640 Nonpathogen - hypothetical protein PP_3935 1 None None None 26989291 Nonpathogen - hypothetical protein PP_2571 1 None None None 26989538 Common oprJ outer membrane protein OprJ PP_2819 121 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26991776 Common - putative deoxyribonucleotide triphosphate pyrophosphatase PP_5100 227 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 26987182 Common secE preprotein translocase subunit SecE PP_0441 31 COG0690 SecE, Preprotein translocase subunit SecE Intracellular trafficking and secretion 26990396 Nonpathogen - hypothetical protein PP_3688 1 None None None 26991152 Common - dioxygenase, TauD/TfdA family PP_4466 47 COG2175 TauD, Probable taurine catabolism dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 26992027 Common zwf-3 glucose-6-phosphate 1-dehydrogenase PP_5351 159 COG0364 Zwf, Glucose-6-phosphate 1-dehydrogenase Carbohydrate transport and metabolism 26991192 Common - potassium uptake protein, TrkH family PP_4507 165 COG0168 TrkG, Trk-type K+ transport systems, membrane components Inorganic ion transport and metabolism 26987763 Common xseA exodeoxyribonuclease VII large subunit PP_1027 204 COG1570 XseA, Exonuclease VII, large subunit DNA replication, recombination, and repair 26989253 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein PP_2533 229 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 26991869 Common gcvH glycine cleavage system protein H PP_5193 185 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 26989709 Common - transcriptional regulator, MerR family PP_2990 122 COG0789 SoxR, Predicted transcriptional regulators Transcription 26991050 Common fliK flagellar hook-length control protein FliK PP_4361 34 COG3144 FliK, Flagellar hook-length control protein Cell motility and secretion 26990934 Common - peptide synthase PP_4243 222 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 26987852 Common - site-specific recombinase, resolvase family PP_1116 74 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 161378142 Common rplU 50S ribosomal protein L21 PP_0688 150 COG0261 RplU, Ribosomal protein L21 Translation, ribosomal structure and biogenesis 26989866 Common - periplasmic polyamine-binding protein, putative PP_3147 132 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26988243 Common - hypothetical protein PP_1511 37 COG3921 COG3921, Uncharacterized protein conserved in bacteria Function unknown 26990530 Common - hypothetical protein PP_3825 4 COG5161 SFT1, Pre-mRNA cleavage and polyadenylation specificity factor RNA processing and modification 26988560 Common aroC chorismate synthase PP_1830 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 26991159 Common - aspartate kinase PP_4473 235 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 26988891 Common - hypothetical protein PP_2167 21 None None None 26991021 Common - hypothetical protein PP_4331 8 None None None 26986855 Common cyoE-1 protoheme IX farnesyltransferase PP_0110 166 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 26988153 Common tctD transcriptional regulatory protein TctD PP_1420 221 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26988963 Common - transporter, EamA family PP_2239 61 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 26989159 Common - transcriptional regulator, LysR family PP_2436 134 COG0583 LysR, Transcriptional regulator Transcription 26989618 Common - hypothetical protein PP_2899 1 None None None 26988699 Nonpathogen - hypothetical protein PP_1973 1 None None None 26991190 Common - sensor histidine kinase PP_4505 216 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26991469 Common - metal ion transporter, putative PP_4789 217 COG4535 CorC, Putative Mg2+ and Co2+ transporter CorC Inorganic ion transport and metabolism 26987082 Common glnE glutamate-ammonia-ligase adenylyltransferase PP_0340 119 COG1391 GlnE, Glutamine synthetase adenylyltransferase Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms 26989132 Common - cobalt-zinc-cadmium resistance protein CzcB, putative PP_2409 159 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26989505 Common - hypothetical protein PP_2786 27 COG3026 RseB, Negative regulator of sigma E activity Signal transduction mechanisms 26990591 Nonpathogen - hypothetical protein PP_3886 1 None None None 26990122 Common - cobalamin biosynthesis protein cobE, putative PP_3409 65 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 26990083 Common - major facilitator family transporter PP_3368 126 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990709 Common ftsK cell division protein FtsK PP_4004 199 COG1674 FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins Cell division and chromosome partitioning 26991607 Common - transcriptional regulator, LysR family PP_4929 154 COG0583 LysR, Transcriptional regulator Transcription 26989428 Common - long-chain-fatty-acid--CoA ligase, putative PP_2709 214 COG1022 FAA1, Long-chain acyl-CoA synthetases (AMP-forming) Lipid metabolism 26986961 Common - sensory box protein PP_0218 194 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26990262 Common - transcriptional regulator EmrR, putative PP_3550 118 COG1846 MarR, Transcriptional regulators Transcription 26991492 Common - 3-methyladenine DNA glycosylase PP_4812 57 COG2094 Mpg, 3-methyladenine DNA glycosylase DNA replication, recombination, and repair 26990372 Common - hypothetical protein PP_3661 111 COG2855 COG2855, Predicted membrane protein Function unknown 26990309 Common - hypothetical protein PP_3598 121 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 26988899 Common - 3-oxoacyl-(acyl-carrier-protein) reductase, putative PP_2175 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26989822 Common - hypothetical protein PP_3103 2 None None None 26989513 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_2794 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26988197 Common trmD tRNA (guanine-N(1)-)-methyltransferase PP_1464 215 COG0336 TrmD, tRNA-(guanine-N1)-methyltransferase Translation, ribosomal structure and biogenesis 26987299 Common dipZ thiol:disulfide interchange protein precursor PP_0561 75 COG4232 COG4232, Thiol:disulfide interchange protein Posttranslational modification, protein turnover, chaperones / Energy production and conversion 26988656 Common arsC-2 arsenate reductase PP_1928 128 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 26988435 Common - assimilatory nitrate reductase/sulfite reductase, putative PP_1703 202 COG0369 CysJ, Sulfite reductase, alpha subunit (flavoprotein) Inorganic ion transport and metabolism 26991428 Common - ISPpu15, transposase Orf1 PP_4746 49 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990244 Common - transcriptional regulator, AsnC family PP_3532 141 COG1522 Lrp, Transcriptional regulators Transcription 26986856 Common - Sco1/SenC family protein PP_0111 108 COG1999 COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems General function prediction only 26988369 Common - transcriptional regulator, LysR family PP_1637 181 COG0583 LysR, Transcriptional regulator Transcription 26990702 Common - hypothetical protein PP_3997 162 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 26990458 Common - transcriptional regulator, AraC family PP_3753 76 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26986962 Common - ABC transporter, permease protein PP_0219 184 COG2011 AbcD, ABC-type metal ion transport system, permease component Inorganic ion transport and metabolism 26987216 Common rpmJ 50S ribosomal protein L36 PP_0475 139 COG0257 RpmJ, Ribosomal protein L36 Translation, ribosomal structure and biogenesis 26990868 Common - 5-oxo-L-prolinase, putative PP_4176 10 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 26990351 Common - transcriptional regulator, AraC family PP_3640 106 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26988296 Nonpathogen - hypothetical protein PP_1564 1 None None None 26989774 Common gpI pyocin R2_PP, tail formation protein PP_3055 26 COG4385 gpI, Bacteriophage P2-related tail formation protein General function prediction only 26990203 Common - enoly-coenzyme A hydratase/isomerase family protein PP_3491 176 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26986851 Common - cytochrome c oxidase, subunit III PP_0106 159 COG1845 CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 Energy production and conversion 26988709 Common - sensory box protein PP_1983 197 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26987956 Common tolA biopolymer transport protein TolA PP_1221 10 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 26988314 Nonpathogen - hypothetical protein PP_1582 2 None None None 26989404 Common - hypothetical protein PP_2685 54 COG3484 COG3484, Predicted proteasome-type protease Posttranslational modification, protein turnover, chaperones 26986829 Common trpI transcriptional regulator TrpI PP_0084 158 COG0583 LysR, Transcriptional regulator Transcription 26987339 Common ribF bifunctional riboflavin kinase/FMN adenylyltransferase PP_0602 211 COG0196 RibF, FAD synthase Coenzyme metabolism 26987933 Common - transcriptional regulator, Cro/CI family PP_1198 50 COG2944 COG2944, Predicted transcriptional regulator Transcription 161378137 Common mqo-2 malate:quinone oxidoreductase PP_1251 56 COG0579 COG0579, Predicted dehydrogenase General function prediction only 26990583 Common - phage minor capsid protein C, putative PP_3878 186 COG0616 SppA, Periplasmic serine proteases (ClpP class) Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 26990132 Common - sigma-54 dependent transcriptional regulator/response regulator PP_3419 225 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26988682 Common - cytochrome P450 family protein PP_1955 77 COG2124 CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism 26990832 Common - hypothetical protein PP_4138 109 COG0431 COG0431, Predicted flavoprotein General function prediction only 26990623 Nonpathogen - hypothetical protein PP_3918 1 None None None 26990906 Common - aminotransferase, class V PP_4214 178 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 26990431 Common - acyl-CoA synthetase, putative PP_3724 140 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 26988872 Common mfd transcription-repair coupling factor PP_2148 223 COG1197 Mfd, Transcription-repair coupling factor (superfamily II helicase) DNA replication, recombination, and repair / Transcription 26991832 Common - hypothetical protein PP_5156 18 None None None 26987892 Common - transporter, formate/nitrite transporter family, putative PP_1156 33 COG2116 FocA, Formate/nitrite family of transporters Inorganic ion transport and metabolism 26987450 Common - transporter, PerM family PP_0714 112 COG0628 PerM, Predicted permease General function prediction only 26989286 Common - leucine-rich repeat domain protein PP_2566 5 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 26987574 Common suhB extragenic suppressor protein SuhB PP_0838 213 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 26986949 Common - hypothetical protein PP_0205 218 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 26989315 Common - ABC transporter, permease/ATP-binding protein, putative PP_2596 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26989637 Common - trehalose synthase, putative PP_2918 9 None None None 26989687 Common - hypothetical protein PP_2968 29 COG2215 COG2215, ABC-type uncharacterized transport system, permease component General function prediction only 26989991 Common - hypothetical protein PP_3273 37 COG3162 COG3162, Predicted membrane protein Function unknown 26989111 Common - hypothetical protein PP_2387 3 None None None 26990060 Common nikD nickel transporter ATP-binding protein PP_3345 247 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 26990210 Common - ISPpu11, transposase PP_3498 63 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987687 Common rpoX sigma54 modulation protein PP_0951 131 COG1544 COG1544, Ribosome-associated protein Y (PSrp-1) Translation, ribosomal structure and biogenesis 26987097 Common - response regulator PP_0355 138 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26990664 Common - voltage-gated chloride channel family protein PP_3959 140 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 26988235 Common - hypothetical protein PP_1503 3 None None None 26989388 Common - outer membrane protein, putative PP_2669 91 COG3391 COG3391, Uncharacterized conserved protein Function unknown 26991265 Common - hypothetical protein PP_4581 72 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 26991549 Common nadE NAD synthetase PP_4869 168 COG0171 NadE, NAD synthase Coenzyme metabolism 26988067 Common murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase PP_1333 207 COG0770 MurF, UDP-N-acetylmuramyl pentapeptide synthase Cell envelope biogenesis, outer membrane 26989728 Nonpathogen - hypothetical protein PP_3009 1 None None None 26990158 Common - hypothetical protein PP_3445 1 None None None 26990668 Common - hypothetical protein PP_3963 9 None None None 26991984 Common tonB ferric siderophore transport system, periplasmic binding protein TonB PP_5308 21 COG0810 TonB, Periplasmic protein TonB, links inner and outer membranes Cell envelope biogenesis, outer membrane 26989481 Common - hypothetical protein PP_2762 119 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26988832 Common - hypothetical protein PP_2107 11 None None None 26991477 Common - hypothetical protein PP_4797 1 COG3036 COG3036, Uncharacterized protein conserved in bacteria Function unknown 26987268 Common ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase PP_0530 223 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 26990220 Common cobW cobalamin biosynthesis protein CobW PP_3508 127 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 26990269 Common - methyl-accepting chemotaxis transducer PP_3557 126 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26986756 Common dnaN DNA polymerase III subunit beta PP_0011 215 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 26988606 Common - hypothetical protein PP_1876 89 COG2607 COG2607, Predicted ATPase (AAA+ superfamily) General function prediction only 26990336 Common - transporter, LysE family PP_3625 116 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26989335 Common - hypothetical protein PP_2616 45 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 26988547 Common - short chain dehydrogenase PP_1817 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26987300 Common ctpL methyl-accepting chemotaxis transducer for inorganic phosphate CtpL PP_0562 137 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989904 Common pet18 pet18 protein PP_3185 24 COG0819 TenA, Putative transcription activator Transcription 26987619 Common - porin, putative PP_0883 15 None None None 26989490 Common - sigma-54 dependent transcriptional regulator PP_2771 170 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26988937 Common fadDx acyl-CoA ligase PP_2213 218 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 26987019 Common - hypothetical protein PP_0277 1 None None None 26987345 Nonpathogen - hypothetical protein PP_0608 1 None None None 26987858 Common - OmpA family protein PP_1122 170 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26991011 Common dsbE thiol:disulfide interchange protein DsbE PP_4321 147 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 26988342 Common pyrG CTP synthetase PP_1610 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 26989964 Common crtZ beta-carotene hydroxylase PP_3246 12 None None None 26991521 Common - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative PP_4841 112 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26990151 Common - hypothetical protein PP_3438 45 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26991929 Common - arylesterase, putative PP_5253 176 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26986982 Common ssuC sulfonate ABC transporter, permease protein SsuC PP_0239 203 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 26988594 Common - hypothetical protein PP_1864 1 COG5457 COG5457, Uncharacterized conserved small protein Function unknown 26987823 Common - outer membrane protein, OmpA family PP_1087 42 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26987048 Common - hypothetical protein PP_0306 1 None None None 26990347 Common - sulfonate ABC transporter, periplasmic sulfonate-binding protein, putative PP_3636 104 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26988760 Common benE-1 benzoate transport protein PP_2035 59 COG3135 BenE, Uncharacterized protein involved in benzoate metabolism Secondary metabolites biosynthesis, transport, and catabolism 26990963 Common - hypothetical protein PP_4272 16 None None None 26991338 Common trmA tRNA (uracil-5-)-methyltransferase PP_4654 188 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 26989876 Common - inositol monophosphatase family protein PP_3157 189 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 26990046 Common - hypothetical protein PP_3329 39 COG4325 COG4325, Predicted membrane protein Function unknown 26987263 Common - TonB-dependent receptor, B12 family PP_0525 128 COG4206 BtuB, Outer membrane cobalamin receptor protein Coenzyme metabolism 26991181 Common - aromatic amino acid transporter PP_4495 169 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26989700 Common - Tn4652, cointegrate resolution protein S PP_2981 47 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 26989858 Common - glycosyl transferase, group 1 family protein PP_3139 202 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26990615 Nonpathogen - hypothetical protein PP_3910 1 None None None 26987811 Common glpK glycerol kinase PP_1075 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 26991631 Common - conserved hypothetical protein TIGR00275 PP_4953 142 COG2081 COG2081, Predicted flavoproteins General function prediction only 26987635 Common - hypothetical protein PP_0899 68 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 26988704 Common - transcriptional regulator, TetR family PP_1978 44 COG1309 AcrR, Transcriptional regulator Transcription 26991724 Common ntrC two-component response regulator NtrC PP_5048 221 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26989630 Common - gamma-aminobutyrate transporter PP_2911 184 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26990756 Common glgX glycogen operon protein GlgX PP_4055 155 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 26989322 Common - hypothetical protein PP_2603 32 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 26986812 Common fmt methionyl-tRNA formyltransferase PP_0067 221 COG0223 Fmt, Methionyl-tRNA formyltransferase Translation, ribosomal structure and biogenesis 26990428 Common - NAD(P)H quinone oxidoreductase, putative PP_3720 77 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 26990952 Common - cation-transporting P-type ATPase PP_4261 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 26990318 Common - hypothetical protein PP_3607 55 COG2391 COG2391, Predicted transporter component General function prediction only 26989544 Common - integrase, putative PP_2825 32 None None None 26986794 Common - hypothetical protein PP_0049 7 None None None 26989056 Common - hypothetical protein PP_2332 32 COG4067 COG4067, Uncharacterized protein conserved in archaea Posttranslational modification, protein turnover, chaperones 26988398 Common - hypothetical protein PP_1666 19 COG3249 COG3249, Uncharacterized protein conserved in bacteria Function unknown 26991130 Common - transposase family protein PP_4444 31 COG2963 COG2963, Transposase and inactivated derivatives DNA replication, recombination, and repair 26989695 Common - Tn4652, transposase subunit A PP_2976 27 None None None 26988378 Common - thioredoxin, putative PP_1646 147 COG0526 TrxA, Thiol-disulfide isomerase and thioredoxins Posttranslational modification, protein turnover, chaperones / Energy production and conversion 26987534 Common - GGDEF domain protein PP_0798 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26990994 Common - hypothetical protein PP_4303 6 None None None 26988785 Common soxR transcriptional regulator SoxR PP_2060 97 COG0789 SoxR, Predicted transcriptional regulators Transcription 26987134 Common folB dihydroneopterin aldolase PP_0392 52 COG1539 FolB, Dihydroneopterin aldolase Coenzyme metabolism 26987581 Common hscB co-chaperone HscB PP_0845 55 COG1076 DjlA, DnaJ-domain-containing proteins 1 Posttranslational modification, protein turnover, chaperones 26990296 Common - RND transporter, membrane fusion protein PP_3585 162 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26987568 Common queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase PP_0832 183 COG0809 QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) Translation, ribosomal structure and biogenesis 26990538 Common - response regulator PP_3833 220 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26987704 Common - hypothetical protein PP_0968 16 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 26987196 Common rplD 50S ribosomal protein L4 PP_0455 216 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 26987290 Common adh 2,3-butanediol dehydrogenase PP_0552 214 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 26988015 Common algI alginate O-acetylation protein AlgI PP_1280 85 COG1696 DltB, Predicted membrane protein involved in D-alanine export Cell envelope biogenesis, outer membrane 26987140 Common glpE thiosulfate sulfurtransferase PP_0398 121 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 26986865 Common - zinc ABC transporter, periplasmic zinc-binding protein ZnuA, putative PP_0120 169 COG4531 ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin Inorganic ion transport and metabolism 26989794 Common - sigma-54 dependent transcriptional regulator PP_3075 169 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 26989094 Common - hypothetical protein PP_2370 53 COG3749 COG3749, Uncharacterized protein conserved in bacteria Function unknown 26991899 Common rnk nucleoside diphosphate kinase regulator PP_5223 70 COG0782 GreA, Transcription elongation factor Transcription 26992090 Common atpA F0F1 ATP synthase subunit alpha PP_5415 247 COG0056 AtpA, F0F1-type ATP synthase, alpha subunit Energy production and conversion 26987220 Common rpoA DNA-directed RNA polymerase subunit alpha PP_0479 216 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 26990388 Common - hypothetical protein PP_3679 10 COG0847 DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases DNA replication, recombination, and repair 26989834 Common - ISPpu13, transposase Orf3 PP_3115 9 None None None 26987525 Common ampD N-acetyl-anhydromuranmyl-L-alanine amidase PP_0789 107 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 26990375 Common pssA phosphatidylserine synthase PP_3664 36 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 26988111 Common pcaF beta-ketoadipyl CoA thiolase PP_1377 173 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 26987945 Common - DNA-binding stress protein, putative PP_1210 143 COG0783 Dps, DNA-binding ferritin-like protein (oxidative damage protectant) Inorganic ion transport and metabolism 26990946 Common ccoN-2 cytochrome c oxidase, cbb3-type, subunit I PP_4255 143 COG3278 CcoN, Cbb3-type cytochrome oxidase, subunit 1 Posttranslational modification, protein turnover, chaperones 26988002 Common - hypothetical protein PP_1267 20 None None None 26987123 Common pqqF coenzyme PQQ synthesis protein F PP_0381 150 COG1025 Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like Posttranslational modification, protein turnover, chaperones 26991313 Common - sensory box protein PP_4629 87 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 26989139 Common - iron ABC transporter, ATP-binding protein, putative PP_2416 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 26987820 Common - antioxidant, AhpC/Tsa family PP_1084 222 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 26990508 Common - cation ABC transporter, permease protein, putative PP_3803 186 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 26988903 Common - hypothetical protein PP_2179 122 COG2071 COG2071, Predicted glutamine amidotransferases General function prediction only 26991952 Common - phospholipase D family protein PP_5276 124 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 26990105 Common - porin, putative PP_3390 10 None None None 26991593 Common parE DNA topoisomerase IV subunit B PP_4915 230 COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair 26988694 Common - transcriptional regulator, TetR family PP_1968 94 COG1309 AcrR, Transcriptional regulator Transcription 26991713 Common - outer membrane lipoprotein Blc, putative PP_5037 72 COG3040 Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane 26988143 Common - hypothetical protein PP_1410 5 None None None 26989808 Common - hypothetical protein PP_3089 30 COG3157 Hcp, Hemolysin-coregulated protein (uncharacterized) Function unknown 26989913 Common - hypothetical protein PP_3194 101 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 26990173 Common - hypothetical protein PP_3460 5 None None None 26989561 Common ureD urease accessory protein UreD PP_2842 74 COG0829 UreH, Urease accessory protein UreH Posttranslational modification, protein turnover, chaperones 26987731 Common - hypothetical protein PP_0995 17 COG4944 COG4944, Uncharacterized protein conserved in bacteria Function unknown 26990528 Common - cytochrome c-type protein PP_3823 61 COG2863 COG2863, Cytochrome c553 Energy production and conversion 26986897 Common - hypothetical protein PP_0152 2 None None None 26987334 Common - beta alanine--pyruvate transaminase PP_0596 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26988431 Common - 2-pyrone-4,6-dicarboxylic acid hydrolase, putative PP_1699 49 COG3618 COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 26991920 Common - transcriptional regulator, AraC family PP_5244 121 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26989711 Common - hypothetical protein PP_2992 82 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 26989301 Common - heme oxygenase, putative PP_2582 9 COG3230 HemO, Heme oxygenase Inorganic ion transport and metabolism 26988581 Nonpathogen - hypothetical protein PP_1851 1 None None None 26988662 Nonpathogen - hypothetical protein PP_1934 1 None None None 26988034 Common aapM general amino acid ABC transporter, permease protein PP_1299 172 COG0765 HisM, ABC-type amino acid transport system, permease component Amino acid transport and metabolism 26988094 Common groES co-chaperonin GroES PP_1360 216 COG0234 GroS, Co-chaperonin GroES (HSP10) Posttranslational modification, protein turnover, chaperones 26991065 Common fliD flagellar cap protein FliD PP_4376 87 COG1345 FliD, Flagellar capping protein Cell motility and secretion 26988383 Common - DNA-binding response regulator PP_1651 207 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26987435 Common - transporter, LysE family PP_0699 109 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26991881 Common - hypothetical protein PP_5205 94 COG2947 COG2947, Uncharacterized conserved protein Function unknown 26989046 Common oprI outer membrane lipoprotein OprI PP_2322 1 None None None 26989062 Common prpD 2-methylcitrate dehydratase PP_2338 59 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 26990629 Common - hypothetical protein PP_3924 22 COG3255 COG3255, Putative sterol carrier protein Lipid metabolism 26988093 Common fxsA FxsA PP_1359 3 COG3030 FxsA, Protein affecting phage T7 exclusion by the F plasmid General function prediction only 26991822 Common - dinucleoside polyphosphate hydrolase PP_5146 115 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 26991700 Common - amino acid ABC transporter, periplasmic amino acid-binding protein PP_5024 180 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26987389 Nonpathogen - hypothetical protein PP_0653 1 None None None 26991223 Common - transcriptional regulator, LysR family PP_4539 159 COG0583 LysR, Transcriptional regulator Transcription 26987361 Common clpB ATP-dependent Clp protease, ATP-binding subunit ClpB PP_0625 216 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 26987308 Common - extracellular protein, putative PP_0570 79 COG2373 COG2373, Large extracellular alpha-helical protein General function prediction only 26987166 Common - hypothetical protein PP_0425 86 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 26987817 Common - glutaredoxin-related protein PP_1081 126 COG0278 COG0278, Glutaredoxin-related protein Posttranslational modification, protein turnover, chaperones 26992024 Common - transcriptional regulator, LysR family PP_5348 193 COG0583 LysR, Transcriptional regulator Transcription 26986870 Common - cytochrome c-type protein PP_0125 43 COG3245 CycB, Cytochrome c5 Energy production and conversion 26988746 Common - hypothetical protein PP_2021 62 COG2706 COG2706, 3-carboxymuconate cyclase Carbohydrate transport and metabolism 26990858 Common - hypothetical protein PP_4166 1 None None None 26989285 Common - helicase, putative PP_2565 141 COG0210 UvrD, Superfamily I DNA and RNA helicases DNA replication, recombination, and repair 26988887 Common vacJ vacJ lipoprotein PP_2163 94 COG2853 VacJ, Surface lipoprotein Cell envelope biogenesis, outer membrane 26988667 Common - methyl-accepting chemotaxis transducer PP_1940 144 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26989068 Common - hypothetical protein PP_2344 14 None None None 26989784 Common gpD pyocin R2_PP, tail formation PP_3065 37 COG3500 COG3500, Phage protein D General function prediction only 26988957 Common - hydrolase, isochorismatase family PP_2233 105 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26990053 Common - ubiquinol oxidase subunit II-related protein PP_3338 39 COG1294 AppB, Cytochrome bd-type quinol oxidase, subunit 2 Energy production and conversion 26992054 Common - cytochrome c family protein PP_5378 20 None None None 26990300 Common sdaC serine transporter SdaC PP_3589 33 COG0814 SdaC, Amino acid permeases Amino acid transport and metabolism 161378117 Common - hypothetical protein PP_4872 73 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 26991118 Common - threonine dehydratase PP_4430 196 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 26988060 Common - lipoprotein, putative PP_1325 44 COG3107 LppC, Putative lipoprotein General function prediction only 26989366 Common - major facilitator family transporter PP_2647 186 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26989591 Common - hypothetical protein PP_2872 102 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 26986845 Common cynT carbonic anhydrase PP_0100 154 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 26991347 Common - hypothetical protein PP_4663 22 None None None 26991499 Common - hypothetical protein PP_4819 21 None None None 26987119 Common pqqD pyrroloquinoline quinone biosynthesis protein PqqD PP_0377 14 None None None 26990414 Common - hypothetical protein PP_3706 26 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 26988633 Common - protein-tyrosine-phosphatase PP_1903 141 COG0394 Wzb, Protein-tyrosine-phosphatase Signal transduction mechanisms 26988723 Common - hypothetical protein PP_1998 7 COG3147 DedD, Uncharacterized protein conserved in bacteria Function unknown 26987785 Common xcpT-1 type II secretion pathway protein XcpT PP_1049 97 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26989488 Common - branched-chain amino acid ABC transporter, permease protein, putative PP_2769 86 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 26986862 Common znuB zinc ABC transporter, permease protein ZnuB PP_0117 145 COG1108 ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components Inorganic ion transport and metabolism 26987275 Common - transcriptional regulator, putative PP_0537 6 COG2932 COG2932, Predicted transcriptional regulator Transcription 26987257 Common thiL thiamine monophosphate kinase PP_0519 189 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 26991035 Common - transcriptional regulator, GntR family PP_4345 138 COG1802 GntR, Transcriptional regulators Transcription 26988820 Common pyrD dihydroorotate dehydrogenase 2 PP_2095 232 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 26989258 Common - hypothetical protein PP_2538 1 None None None 26989769 Common - pyocin R2_PP, conserved hypothetical protein PP_3050 3 None None None 26992006 Common - major facilitator family transporter PP_5330 131 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987284 Common - sigma-54 dependent transcriptional regulator PP_0546 177 COG3284 AcoR, Transcriptional activator of acetoin/glycerol metabolism Secondary metabolites biosynthesis, transport, and catabolism / Transcription 26989597 Nonpathogen - hypothetical protein PP_2878 1 None None None 26991542 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_4862 237 COG4221 COG4221, Short-chain alcohol dehydrogenase of unknown specificity General function prediction only 26987961 Common exsB exsB protein PP_1226 178 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 26988209 Common - hypothetical protein PP_1476 52 COG4681 COG4681, Uncharacterized protein conserved in bacteria Function unknown 26991560 Common - iron ABC transporter, periplasmic iron-binding protein, putative PP_4881 114 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 26991283 Common - ISPpu10, transposase PP_4599 57 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987518 Common - hypothetical protein PP_0782 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 26991831 Common serA D-3-phosphoglycerate dehydrogenase PP_5155 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 26991076 Common - hypothetical protein PP_4387 1 None None None 26988124 Common - hypothetical protein PP_1390 1 None None None 26990379 Common - catalase/peroxidase HPI PP_3668 98 COG0376 KatG, Catalase (peroxidase I) Inorganic ion transport and metabolism 26988409 Common cobQ cobyric acid synthase PP_1677 152 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 26987270 Common - hypothetical protein PP_0532 35 COG2819 COG2819, Predicted hydrolase of the alpha/beta superfamily General function prediction only 26987244 Common - lipoprotein, putative PP_0505 21 COG3495 COG3495, Uncharacterized protein conserved in bacteria Function unknown 26990141 Common - TPR domain protein PP_3428 34 COG3063 PilF, Tfp pilus assembly protein PilF Cell motility and secretion / Intracellular trafficking and secretion 26991838 Common - hypothetical protein PP_5162 5 None None None 26987225 Common - major facilitator family transporter PP_0484 221 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26991293 Common - hypothetical protein PP_4609 1 None None None 26987204 Common rpsQ 30S ribosomal protein S17 PP_0463 234 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 26989124 Common - hypothetical protein PP_2401 8 None None None 26989529 Common - hypothetical protein PP_2810 17 None None None 26990894 Common - electron transfer flavoprotein, beta subunit PP_4202 152 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 26990716 Common icd isocitrate dehydrogenase, NADP-dependent, prokaryotic-type PP_4011 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 26989977 Common - acyl-CoA dehydrogenase-related protein PP_3259 22 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26992010 Common - hypothetical protein PP_5334 46 COG2261 COG2261, Predicted membrane protein Function unknown 26987417 Common - hypothetical protein PP_0681 2 None None None 26989464 Common - universal stress protein family PP_2745 36 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 26986924 Common - cytochrome c family protein PP_0180 68 COG0672 FTR1, High-affinity Fe2+/Pb2+ permease Inorganic ion transport and metabolism 26988579 Common - hypothetical protein PP_1849 1 None None None 26987931 Nonpathogen - hypothetical protein PP_1196 5 None None None 26991273 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein PP_4589 209 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 26987927 Common - acetyltransferase, GNAT family PP_1192 52 COG0456 RimI, Acetyltransferases General function prediction only 26986927 Common - glutathione S-transferase family protein PP_0183 53 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26988251 Common - lipoprotein, putative PP_1519 32 COG3126 COG3126, Uncharacterized protein conserved in bacteria Function unknown 26990966 Common zipA cell division protein ZipA PP_4275 45 COG3115 ZipA, Cell division protein Cell division and chromosome partitioning 26987055 Common - electron transfer flavoprotein, beta subunit, putative PP_0313 23 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 26987958 Common oprL peptidoglycan-associated lipoprotein OprL PP_1223 159 COG2885 OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins Cell envelope biogenesis, outer membrane 26988984 Common - sugar ABC transporter, ATP-binding protein PP_2260 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 26989652 Common - putative glutathione S-transferase YghU PP_2933 97 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26987663 Common aroP aromatic amino acid transporter PP_0927 174 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26987920 Common oprH outer membrane protein H1 PP_1185 3 COG3637 COG3637, Opacity protein and related surface antigens Cell envelope biogenesis, outer membrane 26989263 Common - gamma-aminobutyrate transporter, putative PP_2543 172 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26987520 Common - hypothetical protein PP_0784 10 COG5620 COG5620, Uncharacterized conserved protein Function unknown 26991936 Common - hypothetical protein PP_5260 24 COG5383 COG5383, Uncharacterized protein conserved in bacteria Function unknown 26988276 Common - hypothetical protein PP_1544 1 None None None 26988177 Common gcd glucose dehydrogenase (pyrroloquinoline-quinone) PP_1444 59 COG4993 Gcd, Glucose dehydrogenase Carbohydrate transport and metabolism 26989666 Common - transcriptional regulator MvaT, P16 subunit, putative PP_2947 4 None None None 26988536 Common - KpsF/GutQ family protein PP_1806 179 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 26988218 Nonpathogen - hypothetical protein PP_1485 1 None None None 26989699 Common - hypothetical protein PP_2980 40 None None None 26989001 Common - hypothetical protein PP_2277 7 None None None 26991895 Common - hypothetical protein PP_5219 74 COG3000 ERG3, Sterol desaturase Lipid metabolism 26988163 Common algY alginate biosynthesis negative regulator, serine protease AlgY PP_1430 223 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 26987475 Common phrB deoxyribodipyrimidine photolyase PP_0739 142 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 26991199 Common - hypothetical protein PP_4514 144 COG1752 RssA, Predicted esterase of the alpha-beta hydrolase superfamily General function prediction only 26991183 Common - hypothetical protein PP_4498 144 COG1354 COG1354, Uncharacterized conserved protein Function unknown 26989588 Common - oxidoreductase, FMN-binding PP_2869 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 26987340 Common ileS isoleucyl-tRNA synthetase PP_0603 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26990516 Common - transcriptional regulator, LysR family PP_3811 180 COG0583 LysR, Transcriptional regulator Transcription 26989415 Common metR-2 transcriptional activator MetR PP_2696 183 COG0583 LysR, Transcriptional regulator Transcription 26989975 Common - methyltransferase, putative PP_3257 19 COG4123 COG4123, Predicted O-methyltransferase General function prediction only 26990231 Common - lipoprotein, putative PP_3519 1 None None None 26991790 Common - conserved hypothetical protein TIGR00095 PP_5114 212 COG0742 COG0742, N6-adenine-specific methylase DNA replication, recombination, and repair 26991421 Common - hypothetical protein PP_4738 1 None None None 26991113 Common - amino acid ABC transporter, ATP-binding protein PP_4425 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26987359 Common - competence lipoprotein ComL, putative PP_0622 122 COG4105 ComL, DNA uptake lipoprotein General function prediction only 26991744 Common - hypothetical protein PP_5068 110 COG0397 COG0397, Uncharacterized conserved protein Function unknown 26988444 Common - hypothetical protein PP_1712 2 None None None 26988513 Common rmlC dTDP-4-dehydrorhamnose 3,5-epimerase PP_1782 167 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 26987643 Common - RND efflux membrane fusion protein-related protein PP_0907 165 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26991350 Common mmsB 3-hydroxyisobutyrate dehydrogenase PP_4666 170 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 26990916 Common - sensor histidine kinase PP_4224 200 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990444 Common vanB vanillate O-demethylase oxidoreductase PP_3737 105 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26991176 Common phhA phenylalanine 4-monooxygenase PP_4490 45 COG3186 COG3186, Phenylalanine-4-hydroxylase Amino acid transport and metabolism 26989217 Common - hypothetical protein PP_2494 10 None None None 26991695 Common - conserved hypothetical protein TIGR00046 PP_5019 66 COG1385 COG1385, Uncharacterized protein conserved in bacteria Function unknown 26989030 Common - lipoprotein, putative PP_2306 1 None None None 26989924 Common - fumarylacetoacetate hydrolase family protein PP_3205 65 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 26991916 Common - response regulator PP_5240 153 COG4566 TtrR, Response regulator Signal transduction mechanisms 26987709 Common ndpA nucleoid-associated protein NdpA PP_0973 31 COG3081 COG3081, Nucleoid-associated protein General function prediction only 26988690 Common - hypothetical protein PP_1963 3 None None None 26988867 Common lexA-1 LexA repressor PP_2143 172 COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) Transcription / Signal transduction mechanisms 26987071 Common - hypothetical protein PP_0329 7 None None None 26991556 Common rpsR 30S ribosomal protein S18 PP_4876 214 COG0238 RpsR, Ribosomal protein S18 Translation, ribosomal structure and biogenesis 26989767 Common - hypothetical protein PP_3048 2 None None None 26991398 Common tpiA triosephosphate isomerase PP_4715 228 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 26988783 Common - porin, putative PP_2058 15 None None None 26991554 Common rplI 50S ribosomal protein L9 PP_4874 195 COG0359 RplI, Ribosomal protein L9 Translation, ribosomal structure and biogenesis 26989347 Common - ABC transporter, ATP-binding protein PP_2628 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26990167 Common - transcriptional regulatory protein RstA, putative PP_3454 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26990925 Common - oxidoreductase, small subunit, putative PP_4233 120 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 26990154 Common - hypothetical protein PP_3441 1 None None None 26990681 Common - hydrolase, isochorismatase family PP_3976 83 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26988471 Common - beta (1-6) glucans synthase, putative PP_1740 14 COG5309 COG5309, Exo-beta-1,3-glucanase Carbohydrate transport and metabolism 26990235 Nonpathogen - hypothetical protein PP_3523 1 None None None 26988928 Common - copper resistance protein B, putative PP_2204 42 COG3667 PcoB, Uncharacterized protein involved in copper resistance Inorganic ion transport and metabolism 26989690 Common - IS1246 transposase PP_2971 39 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 26988987 Common - sugar ABC transporter, permease protein PP_2263 164 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 26988331 Common - outer membrane protein, bacterial surface antigen family PP_1599 160 COG4775 COG4775, Outer membrane protein/protective antigen OMA87 Cell envelope biogenesis, outer membrane 26991435 Common - transcriptional regulator, TetR family PP_4754 33 COG1309 AcrR, Transcriptional regulator Transcription 26988644 Common acpP acyl carrier protein PP_1915 186 COG0236 AcpP, Acyl carrier protein Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26988558 Common - hypothetical protein PP_1828 1 None None None 26988574 Common plsC 1-acyl-sn-glycerol-3-phosphate acyltransferase PP_1844 170 COG0204 PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase Lipid metabolism 26987078 Common msrA methionine sulfoxide reductase A PP_0336 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 26987909 Common - hypothetical protein PP_1174 1 None None None 26989643 Common - hypothetical protein PP_2924 55 COG4277 COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif General function prediction only 26990678 Nonpathogen - hypothetical protein PP_3973 1 None None None 26987330 Common - short chain dehydrogenase PP_0592 167 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991003 Common - hypothetical protein PP_4312 8 None None None 26991341 Common - metallopeptidase, zinc binding PP_4657 87 COG2321 COG2321, Predicted metalloprotease General function prediction only 26990754 Common - glycosyl hydrolase, putative PP_4053 61 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 26988028 Common moaD molybdenum cofactor biosynthesis protein D PP_1293 63 COG1977 MoaD, Molybdopterin converting factor, small subunit Coenzyme metabolism 26989015 Nonpathogen - hypothetical protein PP_2291 1 None None None 26989945 Common - transcriptional regulator, LysR family PP_3227 187 COG0583 LysR, Transcriptional regulator Transcription 26991682 Common phaC poly(3-hydroxyalkanoate) polymerase 2 PP_5005 73 COG3243 PhaC, Poly(3-hydroxyalkanoate) synthetase Lipid metabolism 26989900 Common - site-specific recombinase, phage integrase family PP_3181 45 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 26990362 Common - sensor histidine kinase/response regulator PP_3651 219 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26990512 Common - thioesterase PP_3807 48 COG3208 GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 26986751 Common yidC putative inner membrane protein translocase component YidC PP_0006 213 COG0706 YidC, Preprotein translocase subunit YidC Intracellular trafficking and secretion 26988847 Common moeA molybdopterin biosynthesis MoeA protein PP_2123 195 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 26987983 Common - transporter, LysE family PP_1248 79 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26988855 Common - ABC transporter, ATP-binding protein PP_2131 249 COG0488 Uup, ATPase components of ABC transporters with duplicated ATPase domains General function prediction only 26991359 Common - putative sulfite oxidase subunit YedZ PP_4675 73 COG2717 COG2717, Predicted membrane protein Function unknown 26987104 Common bioB biotin synthetase PP_0362 183 COG0502 BioB, Biotin synthase and related enzymes Coenzyme metabolism 26988421 Common - long-chain fatty acid transporter, putative PP_1689 88 COG2067 FadL, Long-chain fatty acid transport protein Lipid metabolism 26988170 Common - heavy metal sensor histidine kinase PP_1437 222 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987595 Common - carbon-nitrogen hydrolase family protein PP_0859 200 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26986952 Common - nitrate ABC transporter, permease protein, putative PP_0208 191 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 26989430 Common - short chain dehydrogenase PP_2711 237 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26987759 Common pgl 6-phosphogluconolactonase PP_1023 109 COG0363 NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase Carbohydrate transport and metabolism 26989780 Common - pyocin R2_PP, conserved hypothetical protein PP_3061 3 None None None 26990673 Common - sensor histidine kinase PP_3968 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26986951 Common - nitrate ABC transporter, periplasmic nitrate-binding protein, putative PP_0207 73 COG0715 TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Inorganic ion transport and metabolism 26986974 Common tauC taurine ABC transporter, permease protein PP_0231 200 COG0600 TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Inorganic ion transport and metabolism 26988993 Common - N-acetylmuramoyl-L-alanine amidase, putative PP_2269 16 COG3023 AmpD, Negative regulator of beta-lactamase expression Defense mechanisms 26991263 Common - transcriptional regulator, LysR family PP_4579 189 COG0583 LysR, Transcriptional regulator Transcription 26986811 Common sun sun protein PP_0066 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 26988262 Common - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative PP_1530 52 COG2171 DapD, Tetrahydrodipicolinate N-succinyltransferase Amino acid transport and metabolism 26991924 Common - hydrolase, isochorismatase family PP_5248 83 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 26989909 Common - ornithine cyclodeaminase PP_3190 88 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 26989731 Nonpathogen - hypothetical protein PP_3012 1 None None None 26987030 Common - oxalate/formate antiporter, putative PP_0288 80 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 26987014 Common - outer membrane ferric siderophore receptor PP_0272 104 COG4773 FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid Inorganic ion transport and metabolism 26987163 Common trpC indole-3-glycerol-phosphate synthase PP_0422 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 26987879 Common - 3-hydroxyisobutyrate dehydrogenase family protein PP_1143 168 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 26989269 Common - hypothetical protein PP_2549 109 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26991661 Common bioA adenosylmethionine--8-amino-7-oxononanoate transaminase PP_4984 237 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26986918 Common - hypothetical protein PP_0174 53 COG0790 COG0790, FOG: TPR repeat, SEL1 subfamily General function prediction only 26989740 Common - transporter, LysE family PP_3021 106 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26991391 Common - osmY-related protein PP_4707 32 COG2823 OsmY, Predicted periplasmic or secreted lipoprotein General function prediction only 26991196 Common - transcriptional regulator, AraC family PP_4511 126 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26989887 Common benF benzoate-specific porin PP_3168 11 None None None 26989127 Common - hypothetical protein PP_2404 1 None None None 26990355 Common - monooxygenase subunit, putative PP_3644 131 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 26989224 Common - phage integrase, putative PP_2501 91 None None None 26991996 Common phoB DNA-binding response regulator PhoB PP_5320 225 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26987067 Common soxA sarcosine oxidase, alpha subunit PP_0325 181 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 26990189 Common - hypothetical protein PP_3477 13 COG2165 PulG, Type II secretory pathway, pseudopilin PulG Cell motility and secretion / Intracellular trafficking and secretion 26990330 Nonpathogen - hypothetical protein PP_3619 1 None None None 26987575 Common - RNA methyltransferase, TrmH family, group 1 PP_0839 158 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 26991677 Common hslV ATP-dependent protease peptidase subunit PP_5000 149 COG5405 HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit Posttranslational modification, protein turnover, chaperones 26987471 Common - molybdopterin biosynthesis protein MoeB PP_0735 223 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 26987459 Common ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase PP_0723 185 COG1947 IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase Lipid metabolism 26988328 Common cdsA phosphatidate cytidylyltransferase PP_1596 215 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 26989720 Common - CAIB/BAIF family protein PP_3001 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 26988504 Common ihfB integration host factor subunit beta PP_1773 203 COG0776 HimA, Bacterial nucleoid DNA-binding protein DNA replication, recombination, and repair 26988980 Common - transcriptional regulator, Cro/CI family PP_2256 21 COG1476 COG1476, Predicted transcriptional regulators Transcription 26990058 Common nikB nickel transporter permease NikB PP_3343 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26987651 Common sodB superoxide dismutase (Fe) PP_0915 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 26990129 Common gnuK gluconokinase PP_3416 80 COG3265 GntK, Gluconate kinase Carbohydrate transport and metabolism 26990298 Common tpx thiol peroxidase PP_3587 97 COG2077 Tpx, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 26988857 Common - hypothetical protein PP_2133 1 None None None 26988013 Common algF alginate O-acetyltransferase PP_1278 4 None None None 26991165 Common aruG arginine N-succinyltransferase, beta subunit PP_4479 37 COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit Amino acid transport and metabolism 26987752 Common - sugar ABC transporter, permease protein PP_1016 144 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 26988216 Common - polyamine ABC transporter, permease protein PP_1483 194 COG1176 PotB, ABC-type spermidine/putrescine transport system, permease component I Amino acid transport and metabolism 26991980 Common - lipoprotein, putative PP_5304 1 None None None 26988205 Nonpathogen - hypothetical protein PP_1472 1 None None None 26988659 Common - hypothetical protein PP_1931 48 COG3666 COG3666, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990657 Common pcaJ 3-oxoadipate CoA-transferase, subunit B PP_3952 94 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 26987240 Common - NAD-dependent epimerase/dehydratase family protein PP_0501 235 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 26987222 Common katA catalase PP_0481 127 COG0753 KatE, Catalase Inorganic ion transport and metabolism 26989502 Common - 3-oxoacyl-(acyl-carrier-protein) reductase PP_2783 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26987902 Common - TRAP dicarboxylate transporter, DctM subunit, putative PP_1167 136 COG1593 DctQ, TRAP-type C4-dicarboxylate transport system, large permease component Carbohydrate transport and metabolism 26987296 Common accC-1 acetyl-CoA carboxylase biotin carboxylase subunit PP_0558 233 COG0439 AccC, Biotin carboxylase Lipid metabolism 26989982 Common - cardiolipin synthase 2 PP_3264 143 COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes Lipid metabolism 26990027 Common - oxidoreductase, molybdopterin-binding subunit PP_3309 75 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 26987355 Common - branched-chain amino acid ABC transporter, permease protein PP_0618 128 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 26989718 Common - glyoxalase family protein PP_2999 4 None None None 26991610 Common - hypothetical protein PP_4932 154 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 26987776 Common - Sec-independent protein translocase TatB, putative PP_1040 7 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 26987279 Common - acetyltransferase, GNAT family PP_0541 27 COG0456 RimI, Acetyltransferases General function prediction only 26988757 Common - ATPase, putative PP_2032 179 COG0714 COG0714, MoxR-like ATPases General function prediction only 26989764 Common - ClpP protease, putative PP_3045 38 COG0740 ClpP, Protease subunit of ATP-dependent Clp proteases Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 161378121 Common rpsO 30S ribosomal protein S15 PP_4709 215 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 26988051 Common rpsI 30S ribosomal protein S9 PP_1316 228 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 26988048 Common - transcriptional regulator, AraC family PP_1313 148 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26991277 Common - hypothetical protein PP_4593 1 None None None 26990810 Common aceA isocitrate lyase PP_4116 128 COG2224 AceA, Isocitrate lyase Energy production and conversion 26989197 Common - glutathione S-transferase family protein PP_2474 72 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26991094 Common - sensory box protein PP_4405 189 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26991254 Common - hypothetical protein PP_4570 36 COG3555 COG3555, Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases Posttranslational modification, protein turnover, chaperones 26988281 Common - transcriptional regulator, Cro/CI family PP_1549 31 COG2932 COG2932, Predicted transcriptional regulator Transcription 26990107 Common - anhydrase, family 3 protein PP_3392 212 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 26989378 Common - phosphate ABC transporter, ATP-binding protein PP_2659 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 26989337 Common - hypothetical protein PP_2618 16 COG3521 COG3521, Uncharacterized protein conserved in bacteria Function unknown 161378144 Common - hypothetical protein PP_0513 176 COG1327 COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Transcription 26988491 Common - ABC transporter, ATP-binding protein PP_1760 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 26988959 Common - hypothetical protein PP_2235 1 None None None 26992056 Common copA copper resistance protein A PP_5380 123 COG2132 SufI, Putative multicopper oxidases Secondary metabolites biosynthesis, transport, and catabolism 26987994 Common - amino acid transporter, putative PP_1259 188 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26990324 Common - L-sorbosone dehydrogenase PP_3613 65 COG2133 COG2133, Glucose/sorbosone dehydrogenases Carbohydrate transport and metabolism 26990725 Common - oxidoreductase, putative PP_4020 108 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 26991877 Common - hypothetical protein PP_5201 41 COG3079 COG3079, Uncharacterized protein conserved in bacteria Function unknown 26987658 Common - hypothetical protein PP_0922 33 COG3124 COG3124, Uncharacterized protein conserved in bacteria Function unknown 26987170 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_0429 225 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 26988140 Common - hypothetical protein PP_1406 14 None None None 26986937 Nonpathogen - hypothetical protein PP_0193 1 None None None 26990076 Common - hypothetical protein PP_3361 240 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 26990190 Common - secretion protein, putative PP_3478 139 COG4796 HofQ, Type II secretory pathway, component HofQ Intracellular trafficking and secretion 26989275 Common - hypothetical protein PP_2555 76 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 26990577 Nonpathogen - hypothetical protein PP_3872 1 None None None 26991496 Common - hypothetical protein PP_4816 1 COG1380 COG1380, Putative effector of murein hydrolase LrgA General function prediction only 26990305 Common - amino acid ABC transporter, permease protein PP_3594 173 COG4215 ArtQ, ABC-type arginine transport system, permease component Amino acid transport and metabolism 26990741 Common - glyoxalase family protein PP_4040 37 COG3324 COG3324, Predicted enzyme related to lactoylglutathione lyase General function prediction only 26989120 Common - EF hand domain protein PP_2397 1 COG3767 COG3767, Uncharacterized low-complexity protein Function unknown 26991400 Common folP dihydropteroate synthase PP_4717 218 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 26989136 Common - GGDEF family protein PP_2413 178 COG2199 COG2199, FOG: GGDEF domain Signal transduction mechanisms 26989413 Common - aldehyde dehydrogenase family protein PP_2694 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26991992 Nonpathogen - hypothetical protein PP_5316 1 None None None 26987910 Common - hypothetical protein PP_1175 1 None None None 26989554 Common - oxidoreductase, Ldh family PP_2835 67 COG2055 COG2055, Malate/L-lactate dehydrogenases Energy production and conversion 26992032 Common - long-chain acyl-CoA thioester hydrolase family protein PP_5356 129 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 26988792 Common - drug resistance transporter, EmrB/QacA family PP_2067 206 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987549 Common cyoB cytochrome o ubiquinol oxidase, subunit I PP_0813 165 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 26988474 Common actP acetate permease PP_1743 178 COG4147 DhlC, Predicted symporter General function prediction only 26989078 Common - sensory box histidine kinase/response regulator PP_2354 208 COG4191 COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system Signal transduction mechanisms 26990547 Common - hypothetical protein PP_3842 47 COG3320 COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 26991356 Common recD exodeoxyribonuclease V, alpha subunit PP_4672 120 COG0507 RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member DNA replication, recombination, and repair 26989422 Common - citrate MFS transporter, putative PP_2703 129 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990019 Common - RND efflux membrane fusion protein PP_3301 130 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26990828 Nonpathogen - hypothetical protein PP_4134 1 None None None 26990842 Common - peptide ABC transporter, permease protein PP_4149 221 COG4239 COG4239, ABC-type uncharacterized transport system, permease component General function prediction only 26991768 Common - NLP/P60 family protein PP_5092 155 COG0791 Spr, Cell wall-associated hydrolases (invasion-associated proteins) Cell envelope biogenesis, outer membrane 26990711 Common - arginyl-tRNA-protein transferase PP_4006 85 COG2935 COG2935, Putative arginyl-tRNA:protein arginylyltransferase Posttranslational modification, protein turnover, chaperones 26989604 Common - transporter, putative PP_2885 19 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990182 Common - hypothetical protein PP_3469 7 None None None 26990466 Common - sensor histidine kinase/response regulator PP_3761 223 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26988175 Common - hypothetical protein PP_1442 10 COG5513 COG5513, Predicted secreted protein Function unknown 26987542 Common - surface adhesion protein, putative PP_0806 156 None None None 26988219 Common - polyamine ABC transporter, periplasmic polyamine-binding protein PP_1486 124 COG0687 PotD, Spermidine/putrescine-binding periplasmic protein Amino acid transport and metabolism 26990010 Nonpathogen - hypothetical protein PP_3292 1 None None None 26991108 Common - transposase, OrfB PP_4420 143 COG2801 Tra5, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987836 Common dcd deoxycytidine triphosphate deaminase PP_1100 149 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 26989179 Common rbsC ribose ABC transporter, permease protein PP_2456 109 COG1172 AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Carbohydrate transport and metabolism 26990768 Common - acetyl-CoA carboxylase, biotin carboxylase, putative PP_4067 234 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 26990984 Common - hypothetical protein PP_4293 17 COG3248 Tsx, Nucleoside-binding outer membrane protein Cell envelope biogenesis, outer membrane 26991531 Common - phosphate starvation-inducible protein, PSIF precursor PP_4851 22 None None None 26991287 Common - ISPpu9, transposase PP_4603 30 None None None 26990096 Common - ISPpu9, transposase PP_3381 30 None None None 26988684 Common - oxidoreductase, Pdr/VanB family PP_1957 99 COG1018 Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Energy production and conversion 26992063 Common - heavy metal RND efflux transporter, CzcA family PP_5387 176 COG3696 COG3696, Putative silver efflux pump Inorganic ion transport and metabolism 26988631 Common - hypothetical protein PP_1901 102 COG2835 COG2835, Uncharacterized conserved protein Function unknown 26990081 Common - transcriptional regulator, LysR family PP_3366 193 COG0583 LysR, Transcriptional regulator Transcription 26991297 Common fecA outer membrane iron(III) dicitrate receptor PP_4613 104 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 26988774 Common - alcohol dehydrogenase, iron-containing PP_2049 161 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 26991211 Common - hypothetical protein PP_4526 52 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26992076 Nonpathogen - hypothetical protein PP_5401 1 None None None 26988818 Common nasT response regulator NasT PP_2093 114 COG3707 AmiR, Response regulator with putative antiterminator output domain Signal transduction mechanisms 26989779 Common gpFII pyocin R2_PP, tail tube protein PP_3060 29 COG3498 COG3498, Phage tail tube protein FII General function prediction only 26987767 Common guaB inositol-5-monophosphate dehydrogenase PP_1031 240 COG0516 GuaB, IMP dehydrogenase/GMP reductase Nucleotide transport and metabolism 26991638 Common fda fructose-1,6-bisphosphate aldolase PP_4960 176 COG0191 Fba, Fructose/tagatose bisphosphate aldolase Carbohydrate transport and metabolism 26987428 Common creA creA protein PP_0692 57 COG3045 CreA, Uncharacterized protein conserved in bacteria Function unknown 26988989 Common folD-2 5,10-methylene-tetrahydrofolate dehydrogenase/cyclohydrolase PP_2265 223 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 26990604 Common hicB-2 hicB protein PP_3899 24 COG4226 HicB, Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters Function unknown 26987827 Common - hypothetical protein PP_1091 1 None None None 26989578 Common - hypothetical protein PP_2859 13 COG3172 NadR, Predicted ATPase/kinase involved in NAD metabolism Coenzyme metabolism 26987871 Common - hypothetical protein PP_1135 2 COG3650 COG3650, Predicted membrane protein Function unknown 26990386 Common - hypothetical protein PP_3677 3 None None None 26987454 Common - sulfate transporter PP_0718 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 26988103 Common - hypothetical protein PP_1369 6 COG3233 COG3233, Predicted deacetylase General function prediction only 26989208 Common - hypothetical protein PP_2485 74 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 161378128 Common - 3-oxoacyl-(acyl carrier protein) synthase II PP_3303 210 COG0304 FabB, 3-oxoacyl-(acyl-carrier-protein) synthase Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26992049 Common - Rieske 2Fe-2S family protein PP_5373 85 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 26987830 Common - hypothetical protein PP_1094 52 COG4659 RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit RnfG Energy production and conversion 26988450 Common - hypothetical protein PP_1718 158 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 26987323 Common - transcriptional regulator, MerR family PP_0585 143 COG0789 SoxR, Predicted transcriptional regulators Transcription 26987465 Common - phosphoenolpyruvate synthase-related protein PP_0729 19 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 26989008 Nonpathogen - tail tubular protein B PP_2284 2 None None None 26989408 Common - endoribonuclease, putative PP_2689 165 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26991382 Common folK-2 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase PP_4698 192 COG0801 FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Coenzyme metabolism 26992035 Common - CobW/P47K family protein PP_5359 126 COG0523 COG0523, Putative GTPases (G3E family) General function prediction only 26991209 Common - sodium-solute symporter, putative PP_4524 169 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 26991486 Common rodA rod-shape-determining protein RodA PP_4806 207 COG0772 FtsW, Bacterial cell division membrane protein Cell division and chromosome partitioning 26989357 Common - cellulose synthase subunit BcsC PP_2638 25 COG5010 TadD, Flp pilus assembly protein TadD, contains TPR repeats Intracellular trafficking and secretion 26990988 Common gcl glyoxylate carboligase PP_4297 221 COG3960 COG3960, Glyoxylate carboligase General function prediction only 26991054 Common fliJ flagellar biosynthesis chaperone PP_4365 32 COG2882 FliJ, Flagellar biosynthesis chaperone Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones 26990498 Common - transposase family protein PP_3793 36 COG3039 COG3039, Transposase and inactivated derivatives, IS5 family DNA replication, recombination, and repair 26991363 Common ilvH acetolactate synthase 3 regulatory subunit PP_4679 189 COG0440 IlvH, Acetolactate synthase, small (regulatory) subunit Amino acid transport and metabolism 26987968 Common - hypothetical protein PP_1233 91 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 26989320 Common - transcriptional regulator, IclR family PP_2601 115 COG1414 IclR, Transcriptional regulator Transcription 26990227 Common hyuA hydantoin utilization protein A PP_3515 118 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 26990201 Nonpathogen - hypothetical protein PP_3489 1 None None None 26986834 Common osmC osmotically inducible protein OsmC PP_0089 74 COG1764 OsmC, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 26987087 Common - heptose kinase WapP, putative PP_0345 4 None None None 26988875 Common sthA soluble pyridine nucleotide transhydrogenase PP_2151 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 26990977 Common - polysaccharide deacetylase family protein PP_4286 94 COG0726 CDA1, Predicted xylanase/chitin deacetylase Carbohydrate transport and metabolism 26988273 Common - methyltransferase, putative PP_1541 8 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 26989166 Common - transporter, sodium-dicarboxylate symporter family PP_2443 127 COG3633 SstT, Na+/serine symporter Amino acid transport and metabolism 26989448 Common - hypothetical protein PP_2729 22 None None None 26989313 Common - ferric siderophore ABC transporter, permease protein PP_2594 37 COG4606 CeuB, ABC-type enterochelin transport system, permease component Inorganic ion transport and metabolism 26991565 Common - hypothetical protein PP_4887 8 None None None 26991783 Common mtgA monofunctional biosynthetic peptidoglycan transglycosylase PP_5107 200 COG0744 MrcB, Membrane carboxypeptidase (penicillin-binding protein) Cell envelope biogenesis, outer membrane 26991506 Common cobJ precorrin-3B C17-methyltransferase PP_4826 118 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 26988893 Common - tRNA-dihydrouridine synthase A PP_2169 206 COG0042 COG0042, tRNA-dihydrouridine synthase Translation, ribosomal structure and biogenesis 26986881 Common - hypothetical protein PP_0136 6 None None None 26990918 Common - hypothetical protein PP_4226 1 None None None 26988125 Common - transcriptional regulator, LysR family PP_1391 181 COG0583 LysR, Transcriptional regulator Transcription 26988075 Common ftsA cell division protein FtsA PP_1341 192 COG0849 FtsA, Actin-like ATPase involved in cell division Cell division and chromosome partitioning 26990437 Common - DNA-binding response regulator PP_3730 224 COG0745 OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Signal transduction mechanisms / Transcription 26987335 Common mmsA-1 methylmalonate-semialdehyde dehydrogenase PP_0597 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26989581 Common uppP undecaprenyl pyrophosphate phosphatase PP_2862 196 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 26991371 Common - heme/hemin ABC transporter, ATP-binding protein PP_4687 249 COG4559 COG4559, ABC-type hemin transport system, ATPase component Inorganic ion transport and metabolism 26987610 Common - hypothetical protein PP_0874 30 COG3450 COG3450, Predicted enzyme of the cupin superfamily General function prediction only 26987966 Common nadA quinolinate synthetase PP_1231 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 26987633 Common - fumarate hydratase, class I PP_0897 148 COG1951 TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain Energy production and conversion 26988403 Nonpathogen - hypothetical protein PP_1671 1 None None None 26987371 Common - group II intron-encoding maturase PP_0635 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26989844 Common - transcriptional regulator, Cro/CI family PP_3125 129 COG1476 COG1476, Predicted transcriptional regulators Transcription 26989987 Common - hypothetical protein PP_3269 12 None None None 26991759 Common - type IV pili biogenesis protein PilM, putative PP_5083 37 COG4972 PilM, Tfp pilus assembly protein, ATPase PilM Cell motility and secretion / Intracellular trafficking and secretion 26990785 Nonpathogen - hypothetical protein PP_4086 1 None None None 26987126 Common - transcriptional regulator, AsnC family PP_0384 152 COG1522 Lrp, Transcriptional regulators Transcription 26990943 Common ccoQ-1 cytochrome c oxidase, cbb3-type, CcoQ subunit PP_4252 5 COG4736 CcoQ, Cbb3-type cytochrome oxidase, subunit 3 Posttranslational modification, protein turnover, chaperones 26987678 Common pmbA pmbA protein PP_0942 154 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 26990688 Nonpathogen - hypothetical protein PP_3983 1 None None None 26990739 Common - putative oxidoreductase PP_4037 215 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 26989382 Common - hypothetical protein PP_2663 34 COG3287 COG3287, Uncharacterized conserved protein Function unknown 26991205 Common - hypothetical protein PP_4520 39 COG3148 COG3148, Uncharacterized conserved protein Function unknown 26990193 Common - hypothetical protein PP_3481 8 None None None 26989186 Common cspA-2 cold shock protein CspA PP_2463 179 COG1278 CspC, Cold shock proteins Transcription 26989118 Common - leucine-rich repeat domain protein PP_2395 18 COG4886 COG4886, Leucine-rich repeat (LRR) protein Function unknown 26990401 Common - transcriptional regulator MvaT, P16 subunit, putative PP_3693 4 None None None 26988507 Common - mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase PP_1776 164 COG0836 {ManC}, Mannose-1-phosphate guanylyltransferase Cell envelope biogenesis, outer membrane 26990632 Common - hypothetical protein PP_3927 18 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 26990692 Common - site-specific recombinase, phage integrase family PP_3987 31 None None None 26991812 Common - ABC transporter, permease protein PP_5136 113 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 26991862 Common argE acetylornithine deacetylase PP_5186 197 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 26991840 Common - penicillin amidase family protein PP_5164 79 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 26987862 Common - hydrolase, putative PP_1126 11 COG1874 LacA, Beta-galactosidase Carbohydrate transport and metabolism 26987882 Common - hypothetical protein PP_1146 2 None None None 26990485 Nonpathogen - hypothetical protein PP_3780 1 None None None 26988918 Common - transcriptional regulator, LysR family PP_2194 70 COG0583 LysR, Transcriptional regulator Transcription 26988221 Common - methyl-accepting chemotaxis transducer PP_1488 151 COG0840 Tar, Methyl-accepting chemotaxis protein Cell motility and secretion / Signal transduction mechanisms 26992078 Common - hypothetical protein PP_5403 2 None None None 26991235 Common - hydrolase, alpha/beta fold family PP_4551 94 COG2267 PldB, Lysophospholipase Lipid metabolism 26987402 Common - hypothetical protein PP_0666 60 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26990284 Common - hypothetical protein PP_3572 38 COG3342 COG3342, Uncharacterized conserved protein Function unknown 26990835 Common rnhA ribonuclease H PP_4142 178 COG0328 RnhA, Ribonuclease HI DNA replication, recombination, and repair 26990343 Common - transcriptional regulator, LysR family PP_3632 176 COG0583 LysR, Transcriptional regulator Transcription 26988457 Common - hypothetical protein PP_1725 18 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 26991688 Common ubiE ubiquinone/menaquinone biosynthesis methyltransferase PP_5011 220 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26991825 Common ilvA-2 threonine dehydratase PP_5149 222 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 26990791 Common - hypothetical protein PP_4096 17 COG1651 DsbG, Protein-disulfide isomerase Posttranslational modification, protein turnover, chaperones 26991247 Common - hypothetical protein PP_4563 44 COG2996 COG2996, Uncharacterized protein conserved in bacteria Function unknown 26991442 Common - hydrolase, haloacid dehalogenase-like family PP_4761 76 COG0546 Gph, Predicted phosphatases General function prediction only 26992087 Common atpC F0F1 ATP synthase subunit epsilon PP_5412 156 COG0355 AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) Energy production and conversion 26989087 Common csuE type 1 pili protein CsuE PP_2363 20 COG5430 COG5430, Uncharacterized secreted protein Function unknown 26991105 Nonpathogen - hypothetical protein PP_4417 1 None None None 26989754 Nonpathogen - hypothetical protein PP_3035 1 None None None 26989809 Common - OmpA domain protein PP_3090 95 COG3523 IcmF, Uncharacterized protein conserved in bacteria Function unknown 26988086 Common - nucleotide-binding protein PP_1352 107 COG1666 COG1666, Uncharacterized protein conserved in bacteria Function unknown 26989203 Common - xanthine dehydrogenase accessory factor, putative PP_2480 106 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 26987608 Common prfC peptide chain release factor 3 PP_0872 249 COG4108 PrfC, Peptide chain release factor RF-3 Translation, ribosomal structure and biogenesis 26990778 Common - hypothetical protein PP_4078 45 COG3520 COG3520, Uncharacterized protein conserved in bacteria Function unknown 26987302 Common - hypothetical protein PP_0564 22 COG5345 COG5345, Uncharacterized protein conserved in bacteria Function unknown 26986768 Nonpathogen - hypothetical protein PP_0023 2 None None None 26987625 Common - hypothetical protein PP_0889 72 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 26991957 Common rpmG 50S ribosomal protein L33 PP_5281 142 COG0267 RpmG, Ribosomal protein L33 Translation, ribosomal structure and biogenesis 26986994 Common - hypothetical protein PP_0251 14 None None None 26988616 Common - hypothetical protein PP_1886 2 None None None 26986765 Nonpathogen - hypothetical protein PP_0020 1 None None None 26990294 Common - RND efflux transporter, outer membrane protein PP_3582 114 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26988836 Common acnA aconitate hydratase PP_2112 222 COG1048 AcnA, Aconitase A Energy production and conversion 26990647 Common - maleate cis-trans isomerase PP_3942 43 COG3473 COG3473, Maleate cis-trans isomerase Secondary metabolites biosynthesis, transport, and catabolism 26988551 Common - glutathione S-transferase family protein PP_1821 105 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26989726 Common - hypothetical protein PP_3007 14 None None None 26987401 Common - glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent,putative PP_0665 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26988118 Common ttgC multidrug/solvent RND outer membrane protein TtgC PP_1384 125 COG1538 TolC, Outer membrane protein Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion 26986782 Common oprP porin P PP_0037 24 COG3746 OprP, Phosphate-selective porin Inorganic ion transport and metabolism 26986883 Common - hypothetical protein PP_0138 39 COG2715 SpmA, Uncharacterized membrane protein, required for spore maturation in B.subtilis. General function prediction only 26990795 Common - transcriptional regulator, Cro/CI family PP_4100 10 None None None 26988074 Common ftsQ cell division protein FtsQ PP_1340 74 COG1589 FtsQ, Cell division septal protein Cell envelope biogenesis, outer membrane 26988237 Common ppc phosphoenolpyruvate carboxylase PP_1505 116 COG2352 Ppc, Phosphoenolpyruvate carboxylase Energy production and conversion 26991327 Common - xanthine/uracil permease family protein PP_4643 123 COG2233 UraA, Xanthine/uracil permeases Nucleotide transport and metabolism 26987975 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase PP_1240 217 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 26990478 Common - hypothetical protein PP_3773 1 None None None 26990694 Common - DNA-cytosine methyltransferase PP_3989 111 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 26990761 Common - alpha-amylase family protein PP_4060 95 COG0366 AmyA, Glycosidases Carbohydrate transport and metabolism 26989633 Common proP proline/glycine betaine transporter PP_2914 151 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987564 Common - hypothetical protein PP_0828 55 COG3781 COG3781, Predicted membrane protein Function unknown 26988934 Common - transcriptional regulator, LysR family PP_2210 190 COG0583 LysR, Transcriptional regulator Transcription 26988291 Common - phage holin, lambda family PP_1559 8 None None None 26988400 Common - DNA replication initiation factor PP_1668 206 COG0593 DnaA, ATPase involved in DNA replication initiation DNA replication, recombination, and repair 26991964 Common - phosphomannomutase PP_5288 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 26990771 Common - hypothetical protein PP_4070 3 COG3712 FecR, Fe2+-dicitrate sensor, membrane component Inorganic ion transport and metabolism / Signal transduction mechanisms 26989247 Common - hypothetical protein PP_2527 5 None None None 26989200 Common - isoquinoline 1-oxidoreductase, alpha subunit, putative PP_2477 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 26989453 Common cfa cyclopropane-fatty-acyl-phospholipid synthase PP_2734 127 COG2230 Cfa, Cyclopropane fatty acid synthase and related methyltransferases Cell envelope biogenesis, outer membrane 26986860 Common katE hydroperoxidase II PP_0115 126 COG0753 KatE, Catalase Inorganic ion transport and metabolism 26987099 Common - ACT domain protein PP_0357 25 COG2716 GcvR, Glycine cleavage system regulatory protein Amino acid transport and metabolism 26987370 Common pilA type IV pili prepilin PilA PP_0634 74 COG4969 PilA, Tfp pilus assembly protein, major pilin PilA Cell motility and secretion / Intracellular trafficking and secretion 26991440 Common - transcriptional regulator, GntR family PP_4759 139 COG2186 FadR, Transcriptional regulators Transcription 26987441 Common - DNA-3-methyladenine glycosylase PP_0705 113 COG0122 AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 26990666 Common - transporter, putative PP_3961 27 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26990225 Common - transcriptional regulator, LysR family PP_3513 162 COG0583 LysR, Transcriptional regulator Transcription 26991547 Common - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein PP_4867 154 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 26989863 Common sda-3 L-serine dehydratase, iron-sulfur-dependent, single chain form PP_3144 124 COG1760 SdaA, L-serine deaminase Amino acid transport and metabolism 26986984 Common ssuF organosulfonate utilization protein SsuF PP_0241 51 COG3585 MopI, Molybdopterin-binding protein Coenzyme metabolism 26988127 Common - transcriptional regulator, putative PP_1393 171 COG0583 LysR, Transcriptional regulator Transcription 26987769 Common - sulfatase domain protein PP_1033 75 COG1368 MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Cell envelope biogenesis, outer membrane 26988308 Common - immunity protein, putative PP_1576 10 None None None 26987448 Common - hypothetical protein PP_0712 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 26987583 Common - ferredoxin, 2Fe-2S PP_0847 64 COG0633 Fdx, Ferredoxin Energy production and conversion 26990585 Nonpathogen - hypothetical protein PP_3880 1 None None None 26991540 Common - mannose-6-phosphate isomerase, putative PP_4860 38 COG2942 COG2942, N-acyl-D-glucosamine 2-epimerase Carbohydrate transport and metabolism 26987835 Common - cold-shock domain family protein PP_1099 174 COG1278 CspC, Cold shock proteins Transcription 26986780 Common - GtrA family protein PP_0035 10 COG2246 COG2246, Predicted membrane protein Function unknown 26989020 Nonpathogen - hypothetical protein PP_2296 1 None None None 26988303 Common - hypothetical protein PP_1571 5 None None None 26989150 Nonpathogen - hypothetical protein PP_2427 1 None None None 26989956 Common - transcriptional regulator PyrR, putative PP_3238 50 COG2065 PyrR, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase Nucleotide transport and metabolism 26991318 Common - hypothetical protein PP_4634 33 COG4757 COG4757, Predicted alpha/beta hydrolase General function prediction only 26992085 Common - transcriptional regulator, DeoR family PP_5410 116 COG1349 GlpR, Transcriptional regulators of sugar metabolism Transcription / Carbohydrate transport and metabolism 26991450 Common - hypothetical protein PP_4769 56 COG1432 COG1432, Uncharacterized conserved protein Function unknown 26989689 Common - hypothetical protein PP_2970 1 None None None 26987396 Common - amino acid transporter, AAT family PP_0660 189 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 26987164 Common - hypothetical protein PP_0423 17 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 26990904 Common - hypothetical protein PP_4212 3 None None None 26989595 Common ampC beta-lactamase PP_2876 65 COG1680 AmpC, Beta-lactamase class C and other penicillin binding proteins Defense mechanisms 26988569 Common - hypothetical protein PP_1839 1 None None None 26988728 Common - hypothetical protein PP_2003 13 COG4982 COG4982, 3-oxoacyl- acyl-carrier protein 26987825 Common - hypothetical protein PP_1089 1 None None None 26987796 Common - glutamate synthase, large subunit, putative PP_1060 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 26991986 Common recG ATP-dependent DNA helicase RecG PP_5310 211 COG1200 RecG, RecG-like helicase DNA replication, recombination, and repair / Transcription 26986968 Common - putative amino-acid ABC transporter ATP-binding protein YecC PP_0225 249 COG1126 GlnQ, ABC-type polar amino acid transport system, ATPase component Amino acid transport and metabolism 26988046 Common - tryptophanyl-tRNA synthetase PP_1311 221 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26988544 Common - hypothetical protein PP_1814 2 None None None 26987266 Common ispA geranyltranstransferase PP_0528 241 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 26988065 Common ftsI penicillin-binding protein 3 PP_1331 207 COG0768 FtsI, Cell division protein FtsI/penicillin-binding protein 2 Cell envelope biogenesis, outer membrane 26990286 Common - YER057c/YjgF/UK114 family protein PP_3574 150 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 26989776 Nonpathogen - hypothetical protein PP_3057 1 None None None 26987017 Common - hypothetical protein PP_0275 13 COG4679 COG4679, Phage-related protein Function unknown 26991168 Common - transcriptional regulator, AraC family PP_4482 148 COG4977 COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Transcription 26990617 Common - DNA-cytosine methyltransferase PP_3912 36 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 26989870 Common - aldehyde dehydrogenase family protein PP_3151 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26987856 Common - hypothetical protein PP_1120 9 None None None 26987562 Common - phosphate ABC transporter, permease protein, putative PP_0826 88 COG3639 COG3639, ABC-type phosphate/phosphonate transport system, permease component Inorganic ion transport and metabolism 26988032 Common aapJ general amino acid ABC transporter, periplasmic binding protein PP_1297 107 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26988739 Common - hypothetical protein PP_2014 30 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 26992092 Common atpF F0F1 ATP synthase subunit B PP_5417 135 COG0711 AtpF, F0F1-type ATP synthase, subunit b Energy production and conversion 26987947 Common - hypothetical protein PP_1212 68 COG2331 COG2331, Uncharacterized protein conserved in bacteria Function unknown 26988278 Common - hypothetical protein PP_1546 1 None None None 26991067 Common fliC flagellin FliC PP_4378 127 COG1344 FlgL, Flagellin and related hook-associated proteins Cell motility and secretion 26986814 Common - smf protein PP_0069 209 COG0758 Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake DNA replication, recombination, and repair / Intracellular trafficking and secretion 26991887 Common - ChaC-related protein PP_5211 44 COG3703 ChaC, Uncharacterized protein involved in cation transport Inorganic ion transport and metabolism 26990833 Common - hypothetical protein PP_4139 1 None None None 26988592 Common - hypothetical protein PP_1862 16 COG0730 COG0730, Predicted permeases General function prediction only 26988642 Common fabD acyl-carrier-protein S-malonyltransferase PP_1913 209 COG0331 FabD, (acyl-carrier-protein) S-malonyltransferase Lipid metabolism 26990139 Common mexF multidrug efflux RND transporter MexF PP_3426 177 COG0841 AcrB, Cation/multidrug efflux pump Defense mechanisms 26988687 Common - hypothetical protein PP_1960 3 None None None 26987146 Common - hypothetical protein PP_0405 90 COG3178 COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases General function prediction only 26990961 Common - hypothetical protein PP_4270 8 COG0834 HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Amino acid transport and metabolism / Signal transduction mechanisms 26989025 Common clpX ATP-dependent protease ATP-binding subunit PP_2301 228 COG1219 ClpX, ATP-dependent protease Clp, ATPase subunit Posttranslational modification, protein turnover, chaperones 26990422 Common catC muconolactone isomerase PP_3714 23 COG4829 CatC1, Muconolactone delta-isomerase Secondary metabolites biosynthesis, transport, and catabolism 26989894 Common - dioxygenase, ferredoxin reductase component, putative PP_3175 216 COG1251 NirB, NAD(P)H-nitrite reductase Energy production and conversion 26988762 Common - hypothetical protein PP_2037 136 COG0235 AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Carbohydrate transport and metabolism 26987198 Common rplB 50S ribosomal protein L2 PP_0457 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 26991851 Common - HlyD family secretion protein PP_5175 153 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26990809 Common - hypothetical protein PP_4115 11 COG1450 PulD, Type II secretory pathway, component PulD Cell motility and secretion / Intracellular trafficking and secretion 26986888 Common - hypothetical protein PP_0143 11 None None None 26988649 Common - hypothetical protein PP_1921 7 None None None 26990212 Common - ISPpu14, transposase Orf2 PP_3500 38 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26990609 Nonpathogen - hypothetical protein PP_3904 1 None None None 26990429 Common aspC aspartate aminotransferase PP_3721 238 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 26987312 Common - DNA-binding response regulator, LuxR family PP_0574 219 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26989619 Common - hypothetical protein PP_2900 1 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 26991281 Common moaA molybdenum cofactor biosynthesis protein A PP_4597 201 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 26991738 Nonpathogen - hypothetical protein PP_5062 1 None None None 26991132 Common - group II intron-encoding maturase, putative PP_4446 92 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26990000 Common paaC 3-hydroxybutyryl-CoA dehydrogenase PP_3282 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 26989096 Common - periplasmic sugar-binding protein, putative PP_2372 49 COG1879 RbsB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 26986947 Common - hypothetical protein PP_0203 59 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 26989054 Common - hypothetical protein PP_2330 19 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 26989255 Common - hypothetical protein PP_2535 199 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987319 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase PP_0581 232 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991418 Common lctP L-lactate transporter PP_4735 104 COG1620 LldP, L-lactate permease Energy production and conversion 26988189 Common - hypothetical protein PP_1456 5 None None None 26991614 Common - lipopolysaccharide core biosynthesis protein, putative PP_4936 2 COG3307 RfaL, Lipid A core - O-antigen ligase and related enzymes Cell envelope biogenesis, outer membrane 26991523 Common - branched-chain amino acid ABC transporter, permease protein, putative PP_4843 144 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 26990999 Common - transcriptional regulator, AsnC family PP_4308 54 COG1522 Lrp, Transcriptional regulators Transcription 26990361 Common - MutT/nudix family protein PP_3650 135 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 26991922 Common kefB glutathione-regulated potassium-proton antiporter PP_5246 153 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 26988260 Common - hypothetical protein PP_1528 81 COG2166 COG2166, SufE protein probably involved in Fe-S center assembly General function prediction only 26989396 Common - hypothetical protein PP_2677 18 COG5501 COG5501, Predicted secreted protein Function unknown 26989536 Common mexC multidrug efflux RND membrane fusion protein MexC PP_2817 160 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26991030 Common cheY chemotaxis protein CheY PP_4340 224 COG2204 AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Signal transduction mechanisms 26991023 Common - CheW domain protein PP_4333 14 COG0835 CheW, Chemotaxis signal transduction protein Cell motility and secretion / Signal transduction mechanisms 26987180 Common - hypothetical protein PP_0439 1 None None None 26989292 Common - hypothetical protein PP_2572 3 None None None 26986997 Nonpathogen - hypothetical protein PP_0255 1 COG3809 COG3809, Uncharacterized protein conserved in bacteria Function unknown 26987854 Common - recombinase-related protein PP_1118 56 COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs DNA replication, recombination, and repair 26989149 Common - D-isomer specific 2-hydroxyacid dehydrogenase family protein PP_2426 181 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 26991792 Common - hypothetical protein PP_5116 156 COG0612 PqqL, Predicted Zn-dependent peptidases General function prediction only 26987738 Common arcD arginine/ornithine antiporter PP_1002 106 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 26990992 Common pykF pyruvate kinase PP_4301 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 26987003 Common cysQ 3'(2'),5'-bisphosphate nucleotidase PP_0261 172 COG1218 CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase Inorganic ion transport and metabolism 26990898 Common - major facilitator family transporter PP_4206 112 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26986853 Common - hypothetical protein PP_0108 11 None None None 26991681 Common - poly(3-hydroxyalkanoate) depolymerase PP_5004 125 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 26988940 Common - acyl-CoA dehydrogenase family protein PP_2216 167 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26988730 Common - hypothetical protein PP_2005 15 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26989075 Common - acetyl-CoA synthetase, putative PP_2351 218 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 26991081 Common cheR chemotaxis protein methyltransferase CheR PP_4392 151 COG1352 CheR, Methylase of chemotaxis methyl-accepting proteins Cell motility and secretion / Signal transduction mechanisms 161378118 Common prmA ribosomal protein L11 methyltransferase PP_4818 174 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 26988697 Common - hypothetical protein PP_1971 45 COG3816 COG3816, Uncharacterized protein conserved in bacteria Function unknown 26989661 Common - response regulator PP_2942 204 COG3437 COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain Transcription / Signal transduction mechanisms 26991378 Common - glutamyl-Q tRNA(Asp) synthetase PP_4694 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 26989157 Common - hypothetical protein PP_2434 30 COG5654 COG5654, Uncharacterized conserved protein Function unknown 26991774 Common metW methionine biosynthesis protein PP_5098 70 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 26991426 Common - hypothetical protein PP_4743 10 COG3950 COG3950, Predicted ATP-binding protein involved in virulence General function prediction only 26991213 Common - hypothetical protein PP_4528 1 None None None 26989018 Nonpathogen - hypothetical protein PP_2294 1 None None None 26989533 Common - hypothetical protein PP_2814 15 COG5285 COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin Secondary metabolites biosynthesis, transport, and catabolism 26987110 Common - acyl-CoA dehydrogenase, putative PP_0368 150 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26988017 Common algX alginate biosynthesis protein AlgX PP_1282 6 None None None 26989931 Common - Rieske 2Fe-2S family protein PP_3212 75 COG4638 HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Inorganic ion transport and metabolism / General function prediction only 26990246 Common - transcriptional regulator, LysR family PP_3534 172 COG0583 LysR, Transcriptional regulator Transcription 26988360 Common - CinA domain protein PP_1628 191 COG1546 CinA, Uncharacterized protein (competence- and mitomycin-induced) General function prediction only 26990161 Common nfrB bacteriophage N4 adsorption protein B PP_3448 27 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 26986944 Common - hypothetical protein PP_0200 72 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 26991154 Common - transcriptional regulator, Cro/CI family PP_4468 1 COG2197 CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Signal transduction mechanisms / Transcription 26990532 Common - hypothetical protein PP_3827 110 COG2070 COG2070, Dioxygenases related to 2-nitropropane dioxygenase General function prediction only 26988804 Common - hypothetical protein PP_2079 1 None None None 26991241 Common - hypothetical protein PP_4557 1 None None None 26986832 Common - hypothetical protein PP_0087 3 None None None 26987324 Common - heavy metal translocating P-type ATPase PP_0586 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 26989142 Common - hypothetical protein PP_2419 29 COG3503 COG3503, Predicted membrane protein Function unknown 26988706 Common - conserved hypothetical protein TIGR00051 PP_1980 34 COG0824 FcbC, Predicted thioesterase General function prediction only 26989276 Common - chromate transporter PP_2556 114 COG2059 ChrA, Chromate transport protein ChrA Inorganic ion transport and metabolism 26990439 Common - enoyl-CoA hydratase/isomerase family protein PP_3732 131 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 26988397 Common purM phosphoribosylaminoimidazole synthetase PP_1665 230 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 26991621 Common - glycosyl transferase, putative PP_4943 53 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 26989793 Common - hypothetical protein PP_3074 35 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 26987551 Common cyoD cytochrome o ubiquinol oxidase, protein CyoD PP_0815 54 COG3125 CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 Energy production and conversion 26986796 Common - sigma-54 dependent transcriptional regulator PP_0051 176 COG3829 RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains Transcription / Signal transduction mechanisms 26989402 Common - sensory box histidine kinase/response regulator PP_2683 218 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26987812 Common glpF glycerol uptake facilitator protein PP_1076 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 26989677 Common - glutaredoxin PP_2958 125 COG0695 GrxC, Glutaredoxin and related proteins Posttranslational modification, protein turnover, chaperones 26990871 Common htpG heat shock protein 90 PP_4179 150 COG0326 HtpG, Molecular chaperone, HSP90 family Posttranslational modification, protein turnover, chaperones 26988091 Common - hypothetical protein PP_1357 14 None None None 26988271 Nonpathogen - hypothetical protein PP_1539 1 None None None 26988141 Common - sulfate transporter PP_1407 161 COG0659 SUL1, Sulfate permease and related transporters (MFS superfamily) Inorganic ion transport and metabolism 26988483 Common - hypothetical protein PP_1752 127 COG2326 COG2326, Uncharacterized conserved protein Function unknown 26991834 Common - hypothetical protein PP_5158 70 COG1683 COG1683, Uncharacterized conserved protein Function unknown 26991578 Common - iron-sulfur cluster-binding protein, putative PP_4900 134 COG1600 COG1600, Uncharacterized Fe-S protein Energy production and conversion 26991580 Common orn oligoribonuclease PP_4902 88 COG1949 Orn, Oligoribonuclease (3'->5' exoribonuclease) RNA processing and modification 26989624 Common cysS cysteinyl-tRNA synthetase PP_2905 242 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26990854 Common - hypothetical protein PP_4162 103 COG0628 PerM, Predicted permease General function prediction only 26990061 Common nikE nickel transporter ATP-binding protein PP_3346 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 26987935 Common kup Kup system potassium uptake protein PP_1200 88 COG3158 Kup, K+ transporter Inorganic ion transport and metabolism 26989824 Common - hypothetical protein PP_3105 1 None None None 26988966 Common fepA outer membrane ferric enterobactin receptor PP_2242 129 COG4771 FepA, Outer membrane receptor for ferrienterochelin and colicins Inorganic ion transport and metabolism 26987954 Common tolQ biopolymer transport protein TolQ PP_1219 145 COG0811 TolQ, Biopolymer transport proteins Intracellular trafficking and secretion 26989670 Common - transcriptional regulator, TetR family PP_2951 93 COG1309 AcrR, Transcriptional regulator Transcription 26991028 Common cheA chemotaxis histidine kinase CheA PP_4338 149 COG0643 CheA, Chemotaxis protein histidine kinase and related kinases Cell motility and secretion / Signal transduction mechanisms 26991478 Common - membrane-bound lytic murein transglycosylase, putative PP_4798 104 COG2951 MltB, Membrane-bound lytic murein transglycosylase B Cell envelope biogenesis, outer membrane 26989996 Common phaF ring-oxidation complex protein 1 PP_3278 46 COG3396 COG3396, Uncharacterized conserved protein Function unknown 26990866 Common fabA 3-hydroxydecanoyl-(acyl carrier protein) dehydratase PP_4174 81 COG0764 FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases Lipid metabolism 26988654 Common - phosphatase family protein, putative PP_1926 29 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 26990805 Nonpathogen - hypothetical protein PP_4110 1 None None None 26987227 Common - transcriptional regulator, GntR family PP_0486 178 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 26991068 Common - 3-oxoacyl-(acyl-carrier-protein) synthase III PP_4379 199 COG0332 FabH, 3-oxoacyl- acyl-carrier-protein 26989891 Common - group II intron-encoding maturase PP_3172 91 COG3344 COG3344, Retron-type reverse transcriptase DNA replication, recombination, and repair 26991078 Common flgD flagellar basal body rod modification protein PP_4389 115 COG1843 FlgD, Flagellar hook capping protein Cell motility and secretion 26992012 Common purE phosphoribosylaminoimidazole carboxylase catalytic subunit PP_5336 232 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 26988192 Common - CBS domain protein PP_1459 218 COG4536 CorB, Putative Mg2+ and Co2+ transporter CorB Inorganic ion transport and metabolism 26988248 Common - RND membrane fusion protein PP_1516 142 COG0845 AcrA, Membrane-fusion protein Cell envelope biogenesis, outer membrane 26987286 Common ubiD aromatic acid decarboxylase PP_0548 152 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 26989817 Common - hypothetical protein PP_3098 14 COG3518 COG3518, Uncharacterized protein conserved in bacteria Function unknown 26991890 Common rho transcription termination factor Rho PP_5214 204 COG1158 Rho, Transcription termination factor Transcription 26989898 Common - transcriptional regulator, LysR family PP_3179 189 COG0583 LysR, Transcriptional regulator Transcription 26988829 Common - hypothetical protein PP_2104 2 COG5393 COG5393, Predicted membrane protein Function unknown 26989831 Common - hypothetical protein PP_3112 158 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 26987880 Common - GGDEF domain protein PP_1144 179 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26991449 Common - exonuclease PP_4768 159 COG2176 PolC, DNA polymerase III, alpha subunit (gram-positive type) DNA replication, recombination, and repair 26991745 Common trxC thioredoxin 2 PP_5069 232 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 26986798 Common - hypothetical protein PP_0053 87 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 26989442 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_2723 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26991641 Common pgk phosphoglycerate kinase PP_4963 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 26990034 Common - chaperone-associated ATPase, putative PP_3316 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 26989439 Nonpathogen - hypothetical protein PP_2720 1 None None None 26988943 Nonpathogen - hypothetical protein PP_2219 1 None None None 26989546 Common - alcohol dehydrogenase, zinc-containing PP_2827 184 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 26989586 Common - pyridine nucleotide-disulphide oxidoreductase family protein PP_2867 171 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 26989825 Common - hypothetical protein PP_3106 63 COG3501 VgrG, Uncharacterized protein conserved in bacteria Function unknown 26990119 Common - hypothetical protein PP_3405 67 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 26987506 Common - PemI-like protein PP_0770 22 COG2336 MazE, Growth regulator Signal transduction mechanisms 26988286 Common - hypothetical protein PP_1554 7 None None None 26989003 Nonpathogen - head-to-tail joining protein PP_2279 4 None None None 26989641 Common - urea amidolyase-related protein PP_2922 115 COG1984 DUR1, Allophanate hydrolase subunit 2 Amino acid transport and metabolism 26991364 Common ilvB acetolactate synthase 3 catalytic subunit PP_4680 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 26991938 Common - multidrug efflux protein NorA PP_5262 157 COG0534 NorM, Na+-driven multidrug efflux pump Defense mechanisms 26989192 Common pheS phenylalanyl-tRNA synthetase subunit alpha PP_2469 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 161378115 Common rpmE ribosomal protein L31 PP_5087 205 COG0254 RpmE, Ribosomal protein L31 Translation, ribosomal structure and biogenesis 26990031 Common - heat shock protein, putative PP_3313 107 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 26990205 Common - transcriptional regulator, LysR family PP_3493 111 COG0583 LysR, Transcriptional regulator Transcription 26987128 Common - sensory box protein PP_0386 211 COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Signal transduction mechanisms 26991648 Common - cytochrome c', putative PP_4970 19 COG3909 COG3909, Cytochrome c556 Energy production and conversion 26988358 Common mutS DNA mismatch repair protein PP_1626 201 COG0249 MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair 26990349 Common - acyl-CoA dehydrogenase, putative PP_3638 42 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26991125 Common - ISPpu14, transposase Orf2 PP_4438 38 COG3436 COG3436, Transposase and inactivated derivatives DNA replication, recombination, and repair 26987744 Common - RNA polymerase sigma-70 factor, ECF subfamily PP_1008 90 COG1595 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Transcription 26987840 Common - aotO-related protein PP_1104 24 COG3608 COG3608, Predicted deacylase General function prediction only 26988372 Common - hypothetical protein PP_1640 24 None None None 26988992 Nonpathogen - phage endodeoxyribonuclease I PP_2268 1 None None None 26989940 Common - ABC transporter, permease protein PP_3222 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 26988340 Common - cell cycle protein MesJ, putative PP_1608 202 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 26987412 Common - transcription elongation factor, putative PP_0676 56 COG0782 GreA, Transcription elongation factor Transcription 26991893 Common ppk polyphosphate kinase PP_5217 161 COG0855 Ppk, Polyphosphate kinase Inorganic ion transport and metabolism 26991626 Common - acyl-CoA dehydrogenase family protein PP_4948 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26987922 Common phoQ sensor protein PhoQ PP_1187 215 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26990148 Common - hypothetical protein PP_3435 163 COG2200 Rtn, FOG: EAL domain Signal transduction mechanisms 26987377 Nonpathogen - hypothetical protein PP_0641 1 None None None 26989462 Common - acetyltransferase, GNAT family PP_2743 12 COG0456 RimI, Acetyltransferases General function prediction only 26988741 Common - hypothetical protein PP_2016 20 None None None 26988901 Common - transcriptional regulator, putative PP_2177 62 COG1396 HipB, Predicted transcriptional regulators Transcription 26988811 Common crfX crfX protein PP_2086 1 None None None 26987929 Nonpathogen - hypothetical protein PP_1194 12 None None None 26987665 Common - lipoprotein, putative PP_0929 136 COG0797 RlpA, Lipoproteins Cell envelope biogenesis, outer membrane 26988765 Common - major facilitator family transporter PP_2040 147 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26990233 Common - hypothetical protein PP_3521 24 COG5006 COG5006, Predicted permease, DMT superfamily General function prediction only 26989979 Common - hypothetical protein PP_3261 1 None None None 26988155 Common - hypothetical protein PP_1422 44 COG1639 COG1639, Predicted signal transduction protein Signal transduction mechanisms 26989668 Common - hypothetical protein PP_2949 52 COG0697 RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only 26990303 Common - transcriptional regulator, RpiR family PP_3592 54 COG1737 RpiR, Transcriptional regulators Transcription 26989814 Common - chaperone-associated ATPase, putative PP_3095 215 COG0542 ClpA, ATPases with chaperone activity, ATP-binding subunit Posttranslational modification, protein turnover, chaperones 26991088 Common - glutamine synthetase, putative PP_4399 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26991508 Common cobH precorrin-8X methylmutase PP_4828 118 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 26989310 Common - ferric siderophore ABC transporter, periplasmic siderophore-binding protein PP_2591 73 COG4607 CeuA, ABC-type enterochelin transport system, periplasmic component Inorganic ion transport and metabolism 26991722 Common glnA glutamine synthetase, type I PP_5046 227 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 26991800 Common - ferredoxin, 4Fe-4S PP_5124 121 COG1149 COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain Energy production and conversion 26987645 Common - hypothetical protein PP_0909 28 COG3489 COG3489, Predicted periplasmic lipoprotein General function prediction only 26986922 Common - efflux transporter, membrane fusion protein, putative PP_0178 118 COG1566 EmrA, Multidrug resistance efflux pump Defense mechanisms 26990048 Common - hypothetical protein PP_3331 18 None None None 26986842 Common - hypothetical protein PP_0097 22 COG3529 COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain General function prediction only 26991331 Common - transcriptional regulator, LuxR family PP_4647 43 COG2771 CsgD, DNA-binding HTH domain-containing proteins Transcription 26991111 Common - hypothetical protein PP_4423 52 COG3608 COG3608, Predicted deacylase General function prediction only 26990078 Common - thymidylate kinase, putative PP_3363 9 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 26991719 Common - hypothetical protein PP_5043 14 COG4287 PqaA, PhoPQ-activated pathogenicity-related protein General function prediction only 26987603 Common - FecA-like outer membrane receptor PP_0867 129 COG4772 FecA, Outer membrane receptor for Fe3+-dicitrate Inorganic ion transport and metabolism 26990891 Common - lipoprotein, putative PP_4199 2 None None None 26991954 Common - aldehyde dehydrogenase family protein PP_5278 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 26991185 Common - trpH family protein PP_4500 128 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 26989654 Common - hypothetical protein PP_2935 31 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 26987084 Common waaC heptosyltransferase I PP_0342 82 COG0859 RfaF, ADP-heptose:LPS heptosyltransferase Cell envelope biogenesis, outer membrane 26987917 Common - sensor histidine kinase PP_1182 221 COG0642 BaeS, Signal transduction histidine kinase Signal transduction mechanisms 26992008 Common - hypothetical protein PP_5332 61 COG0676 COG0676, Uncharacterized enzymes related to aldose 1-epimerase Carbohydrate transport and metabolism 26991811 Common - ABC transporter, periplasmic binding protein PP_5135 103 COG1840 AfuA, ABC-type Fe3+ transport system, periplasmic component Inorganic ion transport and metabolism 26987809 Common glpD glycerol-3-phosphate dehydrogenase PP_1073 148 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 26991712 Common - N-formimino-L-glutamate deiminase PP_5036 94 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 26988663 Common - transcriptional regulator, Cro/CI family PP_1935 8 COG1476 COG1476, Predicted transcriptional regulators Transcription 26990100 Common - hypothetical protein PP_3385 45 COG3455 COG3455, Uncharacterized protein conserved in bacteria Function unknown 26988638 Common maf Maf-like protein PP_1909 190 COG0424 Maf, Nucleotide-binding protein implicated in inhibition of septum formation Cell division and chromosome partitioning 26988721 Common accD acetyl-CoA carboxylase subunit beta PP_1996 218 COG0777 AccD, Acetyl-CoA carboxylase beta subunit Lipid metabolism 26988481 Common asnB asparagine synthetase PP_1750 161 COG0367 AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism 26990130 Common gntP gluconate transporter PP_3417 76 COG2610 GntT, H+/gluconate symporter and related permeases Carbohydrate transport and metabolism / Amino acid transport and metabolism 26990570 Common - phage tail protein, putative PP_3865 29 COG5283 COG5283, Phage-related tail protein Function unknown 26991591 Common - hypothetical protein PP_4913 52 COG3577 COG3577, Predicted aspartyl protease General function prediction only 26989349 Common - hypothetical protein PP_2630 16 None None None 26989307 Common - putative aminotransferase PP_2588 236 COG0161 BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Coenzyme metabolism 26987819 Common - bacterioferritin-associated ferredoxin, putative PP_1083 36 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 26991708 Common hutH histidine ammonia-lyase PP_5032 110 COG2986 HutH, Histidine ammonia-lyase Amino acid transport and metabolism 26989722 Common aroQ-3 3-dehydroquinate dehydratase PP_3003 170 COG0757 AroQ, 3-dehydroquinate dehydratase II Amino acid transport and metabolism 26988147 Common ushA 5`-nucleotidase PP_1414 130 COG0737 UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases Nucleotide transport and metabolism 26986801 Common - oxidoreductase, GMC family PP_0056 92 COG2303 BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism 26987527 Common - deoxyribonuclease, TatD family PP_0791 233 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 161378126 Common aroE shikimate 5-dehydrogenase PP_3768 210 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 26987434 Common - transcriptional regulator, LysR family PP_0698 171 COG0583 LysR, Transcriptional regulator Transcription 26991059 Common fliE flagellar hook-basal body protein FliE PP_4370 86 COG1677 FliE, Flagellar hook-basal body protein Cell motility and secretion / Intracellular trafficking and secretion 26987235 Common ansB L-asparaginase, type I PP_0495 81 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 26988381 Common ldhA D-lactate dehydrogenase PP_1649 231 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 26989528 Common - hypothetical protein PP_2809 5 None None None 26989806 Common - excinuclease ABC, A subunit, putative PP_3087 230 COG0178 UvrA, Excinuclease ATPase subunit DNA replication, recombination, and repair 26990370 Common - transcriptional regulator, AraC family PP_3659 69 COG2207 AraC, AraC-type DNA-binding domain-containing proteins Transcription 26991148 Common - 4-hydroxy-4-methyl-2-oxoglutarate aldolase, putative PP_4462 62 COG0684 MenG, Demethylmenaquinone methyltransferase Coenzyme metabolism 26990645 Common - major facilitator family transporter PP_3940 118 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26988909 Common - formate dehydrogenase, alpha subunit, putative PP_2185 215 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 26989244 Common - HD domain protein PP_2524 64 COG1418 COG1418, Predicted HD superfamily hydrolase General function prediction only 26990526 Common galU UTP-glucose-1-phosphate uridylyltransferase PP_3821 231 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 26987347 Common - hypothetical protein PP_0610 1 COG4726 PilX, Tfp pilus assembly protein PilX Cell motility and secretion / Intracellular trafficking and secretion 26987535 Common - porin, putative PP_0799 13 None None None 26988678 Common - oxidoreductase, short chain dehydrogenase/reductase family PP_1951 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 26987132 Common gcp O-sialoglycoprotein endopeptidase PP_0390 249 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 26987261 Common - hypothetical protein PP_0523 1 None None None 26987117 Common - prolyl oligopeptidase family protein PP_0375 111 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 26990340 Common - hypothetical protein PP_3629 64 COG3865 COG3865, Uncharacterized protein conserved in bacteria Function unknown 26987470 Common hemK methyl transferase PP_0734 213 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 26991888 Common - CDP-6-deoxy-delta-3,4-glucoseen reductase PP_5212 103 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 26987380 Nonpathogen - hypothetical protein PP_0644 1 None None None 26991605 Common - toxin secretion ABC transporter protein, HlyB family PP_4927 249 COG2274 SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Defense mechanisms 26987632 Common - carbon-nitrogen hydrolase family protein PP_0896 156 COG0388 COG0388, Predicted amidohydrolase General function prediction only 26989645 Common - UDP-glucose dehydrogenase, putative PP_2926 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 26990800 Common - hypothetical protein PP_4105 25 COG5496 COG5496, Predicted thioesterase General function prediction only 26989877 Common - hypothetical protein PP_3158 12 None None None 26987733 Common - sigma-54 dependent transcriptional regulator/sensory box protein PP_0997 170 COG3283 TyrR, Transcriptional regulator of aromatic amino acids metabolism Transcription / Amino acid transport and metabolism 26987586 Common - conserved hypothetical protein TIGR00048 PP_0850 194 COG0820 COG0820, Predicted Fe-S-cluster redox enzyme General function prediction only 26989058 Common prpB 2-methylisocitrate lyase PP_2334 115 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 26989915 Common - nodulation protein d1 PP_3196 92 COG0583 LysR, Transcriptional regulator Transcription 26989556 Common - major facilitator family transporter PP_2837 206 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 26988043 Common mdeA methionine gamma-lyase PP_1308 212 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 26987728 Common - hypothetical protein PP_0992 62 COG3220 COG3220, Uncharacterized protein conserved in bacteria Function unknown 26988415 Common - transcriptional regulator, MarR family PP_1683 54 COG1846 MarR, Transcriptional regulators Transcription 26988321 Common glnD PII uridylyl-transferase PP_1589 124 COG2844 GlnD, UTP:GlnB (protein PII) uridylyltransferase Posttranslational modification, protein turnover, chaperones 26991033 Common flhF flagellar biosynthesis regulator FlhF PP_4343 247 COG1419 FlhF, Flagellar GTP-binding protein Cell motility and secretion 26991345 Common - oxidoreductase, putative PP_4661 46 COG2249 MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) General function prediction only 26987363 Common - hypothetical protein PP_0627 2 None None None 26991735 Common - hypothetical protein PP_5059 66 COG2861 COG2861, Uncharacterized protein conserved in bacteria Function unknown 26989970 Common - modification methylase, HemK family PP_3252 137 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 26988624 Common - glutathione S-transferase family protein PP_1894 88 COG0625 Gst, Glutathione S-transferase Posttranslational modification, protein turnover, chaperones 26990997 Common - hypothetical protein PP_4306 137 COG1092 COG1092, Predicted SAM-dependent methyltransferases General function prediction only 26988669 Common - transcriptional regulator, LysR family PP_1942 93 COG0583 LysR, Transcriptional regulator Transcription 26988433 Common sugE sugE protein PP_1701 124 COG2076 EmrE, Membrane transporters of cations and cationic drugs Inorganic ion transport and metabolism 26990621 Common - hypothetical protein PP_3916 3 None None None 26989199 Common - alcohol dehydrogenase, zinc-containing PP_2476 99 COG2130 COG2130, Putative NADP-dependent oxidoreductases General function prediction only 161378139 Common hexR DNA-binding transcriptional regulator HexR PP_1021 97 COG1737 RpiR, Transcriptional regulators Transcription 26991480 Common lipA lipoyl synthase PP_4800 190 COG0320 LipA, Lipoate synthase Coenzyme metabolism 26991751 Common gltD glutamate synthase subunit beta PP_5075 197 COG0493 GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases Amino acid transport and metabolism / General function prediction only 26987676 Common tldD tldD protein PP_0940 170 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 26991490 Common nadD nicotinic acid mononucleotide adenyltransferase PP_4810 180 COG1057 NadD, Nicotinic acid mononucleotide adenylyltransferase Coenzyme metabolism 26988604 Common - glutathione peroxidase PP_1874 114 COG0386 BtuE, Glutathione peroxidase Posttranslational modification, protein turnover, chaperones 26987354 Common - branched-chain amino acid ABC transporter, permease protein PP_0617 145 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 26991911 Common - hypothetical protein PP_5235 51 COG2960 COG2960, Uncharacterized protein conserved in bacteria Function unknown 26989486 Common - branched-chain amino acid ABC transporter, ATP-binding protein, putative PP_2767 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 26990732 Common nudC NADH pyrophosphatase PP_4029 99 COG2816 NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding DNA replication, recombination, and repair 26987121 Common pqqB pyrroloquinoline quinone biosynthesis protein PqqB PP_0379 35 COG1235 PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I General function prediction only 26988985 Common - sugar ABC transporter, ATP-binding protein PP_2261 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 26990175 Nonpathogen - hypothetical protein PP_3462 1 None None None 26987783 Common xcpR type II secretion pathway protein XcpR PP_1047 163 COG2804 PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Cell motility and secretion / Intracellular trafficking and secretion 26988357 Common - ferrodoxin, 4Fe-4S PP_1625 135 COG1146 COG1146, Ferredoxin Energy production and conversion 26991437 Common - amino acid permease PP_4756 183 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 26989906 Common codB cytosine permease PP_3187 54 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 26987177 Common tyrS tyrosyl-tRNA synthetase PP_0436 239 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 26992001 Common phoU phosphate transport system regulatory protein PhoU PP_5325 194 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 26989680 Common - transcriptional regulator, LysR family PP_2961 188 COG0583 LysR, Transcriptional regulator Transcription 26990055 Common - TonB-dependent receptor, putative PP_3340 112 COG1629 CirA, Outer membrane receptor proteins, mostly Fe transport Inorganic ion transport and metabolism 26988889 Common - response regulator PP_2165 226 COG2208 RsbU, Serine phosphatase RsbU, regulator of sigma subunit Signal transduction mechanisms / Transcription 26988696 Common - lipoprotein, putative PP_1970 1 None None None 26991797 Common - hypothetical protein PP_5121 7 None None None 26990216 Common - hypothetical protein PP_3504 1 None None None 26989283 Common - antibiotic biosynthesis protein, putative PP_2563 218 COG1020 EntF, Non-ribosomal peptide synthetase modules and related proteins Secondary metabolites biosynthesis, transport, and catabolism 26991558 Common - RNA methyltransferase, TrmH family, group 3 PP_4879 215 COG0566 SpoU, rRNA methylases Translation, ribosomal structure and biogenesis 26990416 Nonpathogen - hypothetical protein PP_3708 2 None None None 26987866 Common - hypothetical protein PP_1130 1 None None None 26990266 Common - acyl-CoA dehydrogenase family protein PP_3554 149 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 26990944 Common ccoP-1 cytochrome c oxidase, cbb3-type, subunit III PP_4253 90 COG2010 CccA, Cytochrome c, mono- and diheme variants Energy production and conversion