Sulfolobus solfataricus P2, complete genome NC_002754 GI_Number Pathogen_associated Gene_name Product Synonym Number_of_Genera COG_Number COG_Description COG_Category 15899715 Common - Dehydrogenase, putative SSO3008 105 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15899072 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO2311 1 None None None 15898992 Nonpathogen - hypothetical protein SSO2218 30 COG1439 COG1439, Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module General function prediction only 15899781 Nonpathogen - hypothetical protein SSO3077 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898755 Nonpathogen - hypothetical protein SSO1959 8 None None None 15897599 Nonpathogen - hypothetical protein SSO0693 2 None None None 15897480 Common metS methionyl-tRNA synthetase SSO0558 249 COG0143 MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15899448 Common - hypothetical protein SSO2733 97 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 15899098 Common gpT-1 Purine phosphoribosyltransferase (gpT-1) SSO2342 32 COG2236 COG2236, Predicted phosphoribosyltransferases General function prediction only 15897099 Common arsB Arsenite transport protein (arsB) SSO0144 154 COG1055 ArsB, Na+/H+ antiporter NhaD and related arsenite permeases Inorganic ion transport and metabolism 15898034 Nonpathogen - First ORF in transposon ISC1439 SSO7351 1 None None None 15899116 Common sdhC Succinate dehydrogenase subunit C (sdhC) SSO2358 49 COG2048 HdrB, Heterodisulfide reductase, subunit B Energy production and conversion 15898527 Common - Second ORF in transposon ISC1491 SSO1720 19 None None None 15898519 Nonpathogen - hypothetical protein SSO1709 1 None None None 15898280 Nonpathogen - hypothetical protein SSO1442 13 COG1857 COG1857, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15898441 Common - hypothetical protein SSO1621 114 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15897742 Nonpathogen - hypothetical protein SSO6661 1 None None None 15899066 Common cbiT cobalt-precorrin-6Y C(15)-methyltransferase SSO2303 132 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 15899126 Nonpathogen - hypothetical protein SSO2370 2 None None None 15898822 Common - ABC transporter SSO2030 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15896990 Nonpathogen - hypothetical protein SSO0018 2 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 15899422 Common - Regucalcin homolog SSO2705 74 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 15899091 Common - hypothetical protein SSO2332 3 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15898077 Common todA Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component, probable (todA) SSO1225 246 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 15899121 Nonpathogen - hypothetical protein SSO10285 3 None None None 15897127 Nonpathogen - hypothetical protein SSO5343 23 COG2888 COG2888, Predicted Zn-ribbon RNA-binding protein with a function in translation Translation, ribosomal structure and biogenesis 15898458 Common - Second ORF in transposon ISC1229 SSO1639 88 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897664 Nonpathogen - hypothetical protein SSO0762 2 None None None 15898206 Nonpathogen - Transposase ISC1439 SSO1367 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897932 Common purE Phosphoribosylaminoimidazole carboxylase catalytic subunit (purE) SSO1064 233 COG0041 PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase Nucleotide transport and metabolism 15897632 Nonpathogen - prefoldin subunit beta SSO0730 34 COG1382 GimC, Prefoldin, chaperonin cofactor Posttranslational modification, protein turnover, chaperones 15899855 Common - Permease, putative SSO3149 63 None None None 15899180 Common - hypothetical protein SSO2432 101 COG2068 COG2068, Uncharacterized MobA-related protein General function prediction only 15897641 Nonpathogen - hypothetical protein SSO0740 3 COG1603 RPP1, RNase P/RNase MRP subunit p30 Translation, ribosomal structure and biogenesis 15899469 Common - hypothetical protein SSO2754 75 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 15899280 Nonpathogen - hypothetical protein SSO2546 1 None None None 15899418 Nonpathogen - Permease, major facilitator superfamily SSO2701 12 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15899384 Nonpathogen - hypothetical protein SSO2661 2 None None None 15899884 Common - Phosphate transporter related protein SSO3180 187 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897394 Common - Integral membrane protein, putative SSO0466 43 COG2409 COG2409, Predicted drug exporters of the RND superfamily General function prediction only 15897746 Nonpathogen - hypothetical protein SSO0847 1 None None None 15898051 Nonpathogen - Second ORF in transposon ISC1217 SSO7389 1 None None None 15899379 Common soxC Quinol oxidase (SoxABC), cytochrome B subunit (soxC) SSO2656 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 15897735 Common - Partial ORF from ISC1778 SSO0836 8 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897208 Nonpathogen - hypothetical protein SSO0264 11 COG4080 COG4080, RecB-family nuclease DNA replication, recombination, and repair 15898564 Nonpathogen zfx-2 Ferredoxin (Amino-end fragment) (zfx-2) SSO8869 6 None None None 15899278 Nonpathogen - hypothetical protein SSO2544 1 None None None 15898299 Nonpathogen - Transposase ISC1439 SSO1466 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898757 Nonpathogen - hypothetical protein SSO1961 2 None None None 15897966 Nonpathogen - hypothetical protein SSO1104 2 None None None 15897487 Nonpathogen atpG ATP synthase subunit G (atpG) SSO6175 1 None None None 15897926 Nonpathogen - hypothetical protein SSO1057 2 None None None 15898962 Nonpathogen - hypothetical protein SSO2183 1 None None None 15899033 Nonpathogen - hypothetical protein SSO2263 9 COG4344 COG4344, Uncharacterized protein conserved in archaea Function unknown 15899267 Common - hypothetical protein SSO2532 130 COG0432 COG0432, Uncharacterized conserved protein Function unknown 15897611 Common rpl5p 50S ribosomal protein L5P SSO0704 249 COG0094 RplE, Ribosomal protein L5 Translation, ribosomal structure and biogenesis 15897786 Nonpathogen - hypothetical protein SSO0900 5 None None None 15897422 Nonpathogen - hypothetical protein SSO0497 1 None None None 15897353 Common - hypothetical protein SSO0422 87 COG0388 COG0388, Predicted amidohydrolase General function prediction only 15898535 Common - Transposase ISC1190 SSO1731 95 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897046 Common dpo3 DNA polymerase III (DNA polymerase B3) (pfu polymerase). (dpo3) SSO0081 56 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 15898812 Common acsA-4 Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment (acsA-4) SSO2021 223 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15897364 Nonpathogen rps27AE 30S ribosomal protein S27ae SSO5844 21 COG1998 RPS31, Ribosomal protein S27AE Translation, ribosomal structure and biogenesis 15898713 Common - First ORF in transposon ISC1913 SSO1915 32 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897670 Common rfc replication factor C small subunit SSO0768 249 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 15899889 Nonpathogen - hypothetical protein SSO12142 2 None None None 15897504 Nonpathogen - hypothetical protein SSO6206 23 COG1888 COG1888, Uncharacterized protein conserved in archaea Function unknown 15899876 Common - Second ORF in transposon ISC1778 SSO3172 68 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898604 Nonpathogen - Second ORF in transposon ISC1212 SSO1804 1 None None None 15898882 Common ribD hypothetical protein SSO2097 189 COG1985 RibD, Pyrimidine reductase, riboflavin biosynthesis Coenzyme metabolism 15897763 Nonpathogen - hypothetical protein SSO0870 3 None None None 15899488 Common ilvB-4 Acetolactate synthase large subunit homolog (ilvB-4) SSO2774 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15898609 Common - hypothetical protein SSO1808 117 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15898286 Common - hypothetical protein SSO1450 85 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15899411 Nonpathogen - hypothetical protein SSO2690 2 None None None 15897997 Common - Protease related protein SSO1141 26 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 15897623 Common rpl3p 50S ribosomal protein L3P SSO0719 96 COG0087 RplC, Ribosomal protein L3 Translation, ribosomal structure and biogenesis 15897015 Nonpathogen doxC Terminal oxidase, subunit (doxC) SSO0045 2 None None None 15898270 Nonpathogen - hypothetical protein SSO1431 2 None None None 15898638 Common - Transposase ISC1058 SSO1837 19 None None None 15897026 Nonpathogen - hypothetical protein SSO0057 1 None None None 15898119 Common dppF-1 Oligo/dipeptide transport, ATP binding protein (dppF-1) SSO1277 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 15898378 Nonpathogen - Orf in transposon ISC1491 SSO8359 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898802 Common hyuB-2 N-methyl hydantoinase B (hyuB-2) SSO2010 95 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15899667 Common - Second ORF in transposon ISC1395 SSO2958 21 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899522 Common soxC-like Quinol oxidase (SoxABC), cytochrome B subunit, putative (soxC-like) SSO2805 149 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 15897055 Common gltX glutamyl-tRNA synthetase SSO0093 249 COG0008 GlnS, Glutamyl- and glutaminyl-tRNA synthetases Translation, ribosomal structure and biogenesis 15897536 Nonpathogen - hypothetical protein SSO0620 12 COG0640 ArsR, Predicted transcriptional regulators Transcription 15898944 Common - Histidine triad (Hit) family protein, putative SSO2163 232 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 15897625 Common ileS Isoleucine-tRNA synthetase (ileS) SSO0722 249 COG0060 IleS, Isoleucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15897600 Nonpathogen adkA adenylate kinase SSO0694 24 COG2019 AdkA, Archaeal adenylate kinase Nucleotide transport and metabolism 15898230 Common - hypothetical protein SSO1388 2 None None None 15898864 Common - hypothetical protein SSO2078 54 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 15898090 Nonpathogen - hypothetical protein SSO1243 6 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897945 Common - ABC transporter, ATP binding subunit SSO1078 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 15898084 Common - hypothetical protein SSO1234 69 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 15899514 Common - hypothetical protein SSO2796 97 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 15899704 Common - Second ORF in transposon ISC1078 SSO2993 24 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899709 Common thsC Thermosome gamma subunit (thermophilic factor 55) (ring complex gamma subunit)(chaperonin gamma subunit) (thsC) SSO3000 243 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 15897445 Nonpathogen - hypothetical protein SSO0522 1 None None None 15897904 Nonpathogen - hypothetical protein SSO1036 1 None None None 15898986 Common - hypothetical protein SSO2211 57 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15897378 Nonpathogen - hypothetical protein SSO0447 13 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15898453 Nonpathogen - hypothetical protein SSO1635 5 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 15898003 Common - hypothetical protein SSO1147 3 None None None 15899733 Nonpathogen - Transposase ISC1225 SSO3027 5 None None None 15898457 Nonpathogen - First ORF in transposon ISC1229 SSO8568 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899866 Common glcF Glycolate oxidase iron-sulfur subunit. (glcF) SSO3161 125 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 15898403 Nonpathogen - hypothetical protein SSO8426 1 None None None 15897188 Common purA adenylosuccinate synthetase SSO0242 235 COG0104 PurA, Adenylosuccinate synthase Nucleotide transport and metabolism 15897278 Common rplP0 acidic ribosomal protein P0 SSO0344 52 COG0244 RplJ, Ribosomal protein L10 Translation, ribosomal structure and biogenesis 15899052 Common - hypothetical protein SSO2285 11 COG0433 COG0433, Predicted ATPase General function prediction only 15897944 Common fumC fumarate hydratase SSO1077 238 COG0114 FumC, Fumarase Energy production and conversion 15899441 Common - hypothetical protein SSO2725 30 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 15898254 Nonpathogen - Partial ORF in transposon ISC1491 SSO7998 1 None None None 15898069 Common - First ORF in transposon ISC1778 SSO1217 23 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897219 Nonpathogen - hypothetical protein SSO0276 6 COG1958 LSM1, Small nuclear ribonucleoprotein (snRNP) homolog Transcription 15898346 Common deoD Purine nucleoside phosporylase (deoD) SSO1519 23 COG0813 DeoD, Purine-nucleoside phosphorylase Nucleotide transport and metabolism 15898844 Common - Catechol 2,3-dioxygenase (metapyrocatechase) SSO2054 43 COG2514 COG2514, Predicted ring-cleavage extradiol dioxygenase General function prediction only 15898196 Common cpsA-1 Thermostable carboxypeptidase (cpsA-1) SSO1355 177 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15899188 Common glnA-2 Glutamine synthetase (glutamate ammonia ligase) (GS). (glnA-2) SSO2440 222 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 15899586 Common alkK-4 Medium-chain-fatty-acid--CoA ligase (alkK-4) SSO2875 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15899145 Common thiD-2 Phosphomethylpyrimidine kinase (thiD-2) SSO2393 221 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 15899576 Common - hypothetical protein SSO2864 51 COG1584 COG1584, Predicted membrane protein Function unknown 15897708 Nonpathogen - hypothetical protein SSO0804 2 None None None 15899644 Common hyuB-3 N-methylhydantoinase B (hyuB-3) SSO2934 95 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15898217 Nonpathogen - hypothetical protein SSO1378 1 None None None 15898545 Common - Second ORF in transposon ISC1058 SSO1744 14 None None None 15898854 Nonpathogen - hypothetical protein SSO2066 1 None None None 15899207 Common ppcB Propionyl-CoA carboxylase beta subunit (ppcB) SSO2463 216 COG4799 COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Lipid metabolism 15899712 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase SSO3004 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15898188 Common - Third ORF in transposon ISC1778 SSO1347 59 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898764 Nonpathogen - hypothetical protein SSO1968 9 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897844 Common - ATP-dependent helicase SSO0965 233 COG1201 Lhr, Lhr-like helicases General function prediction only 15897369 Nonpathogen - tRNA-splicing endonuclease subunit alpha SSO0439 30 COG1676 SEN2, tRNA splicing endonuclease Translation, ribosomal structure and biogenesis 15899244 Common - Transcriptional regulator, putative SSO2506 72 COG1309 AcrR, Transcriptional regulator Transcription 15898773 Nonpathogen - hypothetical protein SSO1977 1 None None None 15899001 Nonpathogen - ribosome biogenesis protein SSO2226 18 COG1756 Mra1, Uncharacterized conserved protein Function unknown 15899179 Common - hypothetical protein SSO2431 23 COG3427 COG3427, Uncharacterized conserved protein Function unknown 15898421 Nonpathogen - hypothetical protein SSO1605 1 COG0622 COG0622, Predicted phosphoesterase General function prediction only 15897299 Common folE GTP cyclohydrolase I SSO0364 176 COG0302 FolE, GTP cyclohydrolase I Coenzyme metabolism 15899568 Nonpathogen - Second ORF in transposon ISC1439 SSO11307 1 None None None 15897609 Common rps8p 30S ribosomal protein S8P SSO0703 216 COG0096 RpsH, Ribosomal protein S8 Translation, ribosomal structure and biogenesis 15898141 Common nodC-like N-acetylglucosaminyltransferase related protein (nodC-like) SSO1299 89 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15898889 Common - hypothetical protein SSO2105 5 None None None 15899834 Nonpathogen - hypothetical protein SSO12018 6 None None None 15899806 Nonpathogen - hypothetical protein SSO3097 15 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15899351 Common - hypothetical protein SSO2626 48 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15899028 Common - hypothetical protein SSO2256 17 COG1892 COG1892, Uncharacterized protein conserved in archaea Function unknown 15898912 Common porD-like Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like) SSO2128 69 COG1144 COG1144, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit Energy production and conversion 15897592 Common - hypothetical protein SSO0687 11 COG1361 COG1361, S-layer domain Cell envelope biogenesis, outer membrane 15898594 Nonpathogen - Partial transposase ISC1359 SSO1796 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897085 Common ubiA prenyltransferase SSO0125 163 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 15897716 Common - hypothetical protein SSO0814 74 COG2265 TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis 15899517 Nonpathogen - hypothetical protein SSO2799 2 None None None 15897834 Nonpathogen - hypothetical protein SSO0955 34 COG1339 COG1339, Transcriptional regulator of a riboflavin/FAD biosynthetic operon Transcription / Coenzyme metabolism 15897271 Common thiI Thiamine biosynthesis protein thiI (thiI) SSO0333 94 COG0301 ThiI, Thiamine biosynthesis ATP pyrophosphatase Coenzyme metabolism 15898837 Nonpathogen - hypothetical protein SSO2046 1 None None None 15899748 Common dhg-2 Glucose 1-dehydrogenase (dhg-2) SSO3042 156 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 15897167 Common rps12P 30S ribosomal protein S12P SSO0219 216 COG0048 RpsL, Ribosomal protein S12 Translation, ribosomal structure and biogenesis 15897226 Common - hypothetical protein SSO0283 75 COG0433 COG0433, Predicted ATPase General function prediction only 15898136 Nonpathogen - hypothetical protein SSO1293 1 None None None 15898108 Nonpathogen - hypothetical protein SSO1265 2 None None None 15897639 Nonpathogen - proteasome subunit alpha SSO0738 34 COG0638 PRE1, 20S proteasome, alpha and beta subunits Posttranslational modification, protein turnover, chaperones 15898573 Nonpathogen - hypothetical protein SSO8892 1 None None None 15899899 Common eda 2-keto-3-deoxy gluconate aldolase (eda) SSO3197 226 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 15898581 Nonpathogen - hypothetical protein SSO1784 1 None None None 15896982 Nonpathogen - hypothetical protein SSO5023 1 None None None 15897400 Common adh-1 Alcohol dehydrogenase (Zn containing) (adh-1) SSO0472 210 COG1062 AdhC, Zn-dependent alcohol dehydrogenases, class III Energy production and conversion 15897725 Nonpathogen - hypothetical protein SSO0825 1 None None None 15898232 Nonpathogen - hypothetical protein SSO1391 9 COG4343 COG4343, Uncharacterized protein conserved in archaea Function unknown 15899795 Common - hypothetical protein SSO3085 4 COG2391 COG2391, Predicted transporter component General function prediction only 15899944 Nonpathogen - hypothetical protein SSO3247 2 None None None 15899386 Nonpathogen - hypothetical protein SSO2663 2 None None None 15899006 Nonpathogen - hypothetical protein SSO2231 4 None None None 15897791 Common ogG N-glycosylase/DNA lyase SSO0904 15 COG1059 COG1059, Thermostable 8-oxoguanine DNA glycosylase DNA replication, recombination, and repair 15897470 Common - Multidrug resistance related protein SSO0548 23 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897958 Nonpathogen - hypothetical protein SSO1093 16 COG1530 CafA, Ribonucleases G and E Translation, ribosomal structure and biogenesis 15897306 Common sun-1 Sun (fmu) protein (sun-1) SSO0371 198 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 15897417 Common pstA Phosphate transport system permease protein (pstA) SSO0491 218 COG0581 PstA, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 15897238 Nonpathogen - hypothetical protein SSO0293 34 COG1736 DPH2, Diphthamide synthase subunit DPH2 Translation, ribosomal structure and biogenesis 15897585 Common - hypothetical protein SSO0678 41 COG2102 COG2102, Predicted ATPases of PP-loop superfamily General function prediction only 15898569 Nonpathogen - Orf in transposon ISC1491 SSO1769 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897304 Common fadD-1 acyl-CoA synthase SSO0369 222 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15898021 Common - Sugar ABC transporter SSO1168 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15898365 Common - Transport protein SSO1539 141 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899360 Nonpathogen - hypothetical protein SSO2634 13 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 15897494 Nonpathogen - Holliday-junction resolvase SSO0575 20 COG1591 COG1591, Holliday junction resolvase - archaeal type DNA replication, recombination, and repair 15899234 Common lipP-1 Lipase (lipP-1) SSO2493 128 COG0657 Aes, Esterase/lipase Lipid metabolism 15899738 Nonpathogen - First ORF in transposon ISC1212 SSO3031 1 None None None 15899282 Nonpathogen - Amino acid transporter, putative SSO2549 5 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15899551 Common - ABC transporter, ATP binding protein (branched chain amino acid) SSO2836 249 COG0411 LivG, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 15898315 Nonpathogen - Second part of one of two inversely orientated ORFs in ISC1043 SSO8194 1 None None None 15897956 Common - hypothetical protein SSO1091 43 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 15899566 Common - Proline/betaine transporter, putative SSO2852 160 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15897229 Nonpathogen rps17E 30S ribosomal protein S17e SSO5561 23 COG1383 RPS17A, Ribosomal protein S17E Translation, ribosomal structure and biogenesis 15898055 Common - Transposase ISC1058 SSO1202 19 None None None 15899503 Common - Transposase ISC1316 SSO2785 77 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898871 Common clcD Carboxymethylenebutenolidase, putative (clcD) SSO2087 117 COG0412 COG0412, Dienelactone hydrolase and related enzymes Secondary metabolites biosynthesis, transport, and catabolism 15897652 Nonpathogen rpl21E 50S ribosomal protein L21e SSO0752 34 COG2139 RPL21A, Ribosomal protein L21E Translation, ribosomal structure and biogenesis 15899578 Nonpathogen - hypothetical protein SSO2866 3 None None None 15896997 Nonpathogen - hypothetical protein SSO0025 2 None None None 15898144 Nonpathogen - First ORF in transposon ISC1439 SSO7635 1 None None None 15898651 Nonpathogen - hypothetical protein SSO1858 2 None None None 15897793 Common - Soluble hydrogenase, small subunit SSO0906 150 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 15899301 Nonpathogen - hypothetical protein SSO2569 2 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 15898885 Common - hypothetical protein SSO2101 21 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15898162 Common - Antibiotic ABC transporter, ATP binding protein SSO1319 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15898665 Nonpathogen - hypothetical protein SSO1872 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 15899655 Common - Second ORF in transposon ISC1048 SSO2947 22 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897528 Common - hypothetical protein SSO0612 6 COG0543 UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases Coenzyme metabolism / Energy production and conversion 15898001 Common trpB-like tryptophan synthase subunit beta SSO1145 224 COG1350 COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) General function prediction only 15898951 Common - hypothetical protein SSO2171 25 COG1618 COG1618, Predicted nucleotide kinase Nucleotide transport and metabolism 15898322 Nonpathogen - hypothetical protein SSO1491 1 None None None 15899840 Common - Regulatory protein, putative SSO3136 89 COG2030 MaoC, Acyl dehydratase Lipid metabolism 15899680 Common soxG Quinol oxidase-2, cytochrome b (soxG) SSO2970 148 COG1290 QcrB, Cytochrome b subunit of the bc complex Energy production and conversion 15899556 Nonpathogen - First ORF in transposon ISC1190 SSO2843 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897875 Common - ABC Transporter SSO0999 36 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15898505 Nonpathogen - hypothetical protein SSO1690 1 None None None 15898008 Common - hypothetical protein SSO1152 62 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 15899816 Common tatC-like tatC-like protein, putative (tatC-like) SSO3108 44 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 15897439 Nonpathogen - Transposase ISC1359 SSO0515 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898269 Nonpathogen - hypothetical protein SSO1430 3 COG1337 COG1337, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15897256 Common - hypothetical protein SSO0315 6 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15898740 Common thiC-2 thiamine biosynthesis protein ThiC SSO1941 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 15897572 Common bioR Biotin--(acetyl-CoA carboxylase) synthetase (bioR) SSO0662 206 COG0340 BirA, Biotin-(acetyl-CoA carboxylase) ligase Coenzyme metabolism 15897129 Common - AAA family ATPase SSO0176 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 15899123 Common thrB homoserine kinase SSO2367 72 COG0083 ThrB, Homoserine kinase Amino acid transport and metabolism 15898901 Nonpathogen - hypothetical protein SSO2117 1 None None None 15899323 Nonpathogen - hypothetical protein SSO2595 9 COG1673 COG1673, Uncharacterized protein conserved in archaea Function unknown 15897419 Common - hypothetical protein SSO0494 62 COG1801 COG1801, Uncharacterized conserved protein Function unknown 15899549 Nonpathogen - Transposase ISC1439 SSO2834 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898305 Nonpathogen - Second ORF in transposon ISC1439 SSO1473 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898933 Nonpathogen - hypothetical protein SSO2152 1 None None None 15897070 Common - hypothetical protein SSO0110 151 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 15898834 Common - Amino acid transporter related protein SSO2043 155 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15899224 Common sucC Succinyl-CoA synthetase, beta subunit (sucC) SSO2483 206 COG0045 SucC, Succinyl-CoA synthetase, beta subunit Energy production and conversion 15898635 Common - hypothetical protein SSO1834 21 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15899849 Nonpathogen - hypothetical protein SSO3146 6 None None None 15897469 Common pqqE-1 Coenzyme PQQ synthesis protein E (pqqE-1) SSO0546 113 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15897869 Common - Transport conserved hypothetical protein SSO0992 23 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15899218 Common - hypothetical protein SSO2475 3 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15898923 Common - hypothetical protein SSO2140 68 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 15897380 Nonpathogen - hypothetical protein SSO0449 16 COG2246 COG2246, Predicted membrane protein Function unknown 15897479 Nonpathogen - DNA primase large subunit SSO0557 14 COG2219 PRI2, Eukaryotic-type DNA primase, large subunit DNA replication, recombination, and repair 15897820 Nonpathogen - Pre mRNA splicing protein SSO0939 34 COG1498 SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog Translation, ribosomal structure and biogenesis 15899494 Common - Dehydrogenase SSO2779 197 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 15897868 Common treX-like Glycogen debranching enzyme, hypothetical (treX-like) SSO0991 34 COG3408 GDB1, Glycogen debranching enzyme Carbohydrate transport and metabolism 15898747 Nonpathogen - Endoglucanase precursor SSO1949 5 None None None 15897558 Common - hypothetical protein SSO0648 30 COG3435 COG3435, Gentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 15898784 Nonpathogen - hypothetical protein SSO1989 1 COG1367 COG1367, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898012 Common acd-like1 Acyl-CoA dehydrogenase related protein (acd-like1) SSO1156 65 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15899512 Common - Oxydoreductase, putative SSO2794 160 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 15897210 Nonpathogen tfE Transcription Factor E (TFE), TFIIE alpha subunit homolog (tfE) SSO0266 31 COG1675 TFA1, Transcription initiation factor IIE, alpha subunit Transcription 15897890 Common hycG Formate hydrogenlyase subunit 7 (hycG) SSO1022 192 COG3260 COG3260, Ni,Fe-hydrogenase III small subunit Energy production and conversion 15899946 Common - hypothetical protein SSO3250 69 COG1814 COG1814, Uncharacterized membrane protein Function unknown 15897662 Nonpathogen - Probable integrase from SSV1 (orf D-335) (fragment) SSO6468 1 COG5397 COG5397, Uncharacterized conserved protein Function unknown 15898274 Common - hypothetical protein SSO1436 8 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15898479 Common huyB-1 N-methylhydantoinase B (huyB-1) SSO1662 95 COG0146 HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15897714 Common ugd UDP-glucose 6-dehydrogenase (ugd) SSO0810 207 COG1004 Ugd, Predicted UDP-glucose 6-dehydrogenase Cell envelope biogenesis, outer membrane 15899046 Common - MutT-like protein SSO2278 203 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 15897686 Nonpathogen - hypothetical protein SSO0783 1 None None None 15899634 Nonpathogen - hypothetical protein SSO2921 2 None None None 15898412 Nonpathogen glpK-1 Glycerol kinase (glpK-1) SSO1599 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897145 Common - hypothetical protein SSO0194 45 COG1656 COG1656, Uncharacterized conserved protein Function unknown 15898011 Common - hypothetical protein SSO1155 58 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15897515 Common hisE Phosphoribosyl-ATP cyclohydrolase (hisE) SSO6223 195 COG0140 HisI, Phosphoribosyl-ATP pyrophosphohydrolase Amino acid transport and metabolism 15899011 Common - hypothetical protein SSO2237 31 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 15899924 Common - Amino acid transporter related protein SSO3224 117 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15898557 Common - Protease, putative SSO1759 18 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 15898677 Nonpathogen - Partial ORF from ISC1778 SSO9134 10 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897778 Common trpD Anthranilate phosphoribosyltransferase (trpD) SSO0890 218 COG0547 TrpD, Anthranilate phosphoribosyltransferase Amino acid transport and metabolism 15898669 Common - hypothetical protein SSO1876 15 COG1522 Lrp, Transcriptional regulators Transcription 15899571 Nonpathogen - hypothetical protein SSO2857 1 None None None 15898684 Common - Transposase ISC1058 SSO1888 19 None None None 15898439 Common - Glycosyltransferase SSO1619 86 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15898737 Nonpathogen - Partial transposase in ISC1225 SSO1937 1 None None None 15899336 Nonpathogen - hypothetical protein SSO2610 8 None None None 15899916 Nonpathogen - hypothetical protein SSO12199 15 COG1694 MazG, Predicted pyrophosphatase General function prediction only 15897883 Common - Amino acid specific permease SSO1009 119 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15897450 Nonpathogen - Second ORF in a partial transposon ISC1439 SSO6050 1 None None None 15898044 Nonpathogen - hypothetical protein SSO1190 2 COG5607 COG5607, Uncharacterized conserved protein Function unknown 15899906 Common dhg-3 Glucose 1-dehydrogenase (dhg-3) SSO3204 189 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 15897899 Common - hypothetical protein SSO1031 22 COG0725 ModA, ABC-type molybdate transport system, periplasmic component Inorganic ion transport and metabolism 15897555 Common rimK-2 Ribosomal protein S6 modification protein (rimK-2) SSO0645 92 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 15899041 Common dapA-1 Dihydrodipicolinate synthase (dapA-1) SSO2274 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 15898154 Common - Ring oxydation complex/ phenylacetic acid degradation related protein SSO1313 44 COG3396 COG3396, Uncharacterized conserved protein Function unknown 15899532 Common - 2-oxoglutarate ferredoxin oxidoreductase subunit beta SSO2816 108 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 15898415 Nonpathogen - ORF in partial transposon ISC1217 SSO8456 1 None None None 15899758 Common - Maltose ABC transporter, maltose binding protein SSO3053 35 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15899061 Common - hypothetical protein SSO2295 29 COG0824 FcbC, Predicted thioesterase General function prediction only 15899598 Nonpathogen - hypothetical protein SSO11387 4 None None None 15898386 Nonpathogen - hypothetical protein SSO1568 2 None None None 15897207 Nonpathogen - Integrase, probable( amino-end fragment) SSO0262 3 COG5397 COG5397, Uncharacterized conserved protein Function unknown 15897139 Common - hypothetical protein SSO0188 48 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 15898687 Nonpathogen - hypothetical protein SSO1891 2 None None None 15897886 Common hoxN High-affinity nickel-transport protein (hoxN) SSO1018 40 COG3376 HoxN, High-affinity nickel permease Inorganic ion transport and metabolism 15898708 Nonpathogen - hypothetical protein SSO1912 1 None None None 15899130 Common - hypothetical protein SSO2374 66 COG1718 RIO1, Serine/threonine protein kinase involved in cell cycle control Signal transduction mechanisms / Cell division and chromosome partitioning 15899776 Common dapA-3 Dihydrodipicolinate synthase (dapA-3) SSO3072 235 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 15897855 Common pyrH uridylate kinase SSO0976 127 COG0528 PyrH, Uridylate kinase Nucleotide transport and metabolism 15899213 Common leuC 3-isopropylmalate dehydratase large subunit SSO2471 223 COG0065 LeuC, 3-isopropylmalate dehydratase large subunit Amino acid transport and metabolism 15899031 Common sqr Sulfide-quinone reductase related protein (sqr) SSO2261 141 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 15899292 Common - Sugar transporter SSO2558 127 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 15898511 Common - Second ORF in transposon ISC1491 SSO1697 19 None None None 15898977 Nonpathogen - hypothetical protein SSO2202 5 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 15897929 Common - glycine cleavage system protein H SSO1061 166 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 15897831 Common - hypothetical protein SSO0952 46 COG1407 COG1407, Predicted ICC-like phosphoesterases General function prediction only 15898290 Nonpathogen - hypothetical protein SSO1458 3 None None None 15897088 Nonpathogen cbiG Cobalamin biosynthesis protein G (cbiG) SSO0129 4 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 15898112 Nonpathogen - hypothetical protein SSO1270 1 COG1203 COG1203, Predicted helicases General function prediction only 15898607 Common - hypothetical protein SSO1806 149 COG1042 COG1042, Acyl-CoA synthetase (NDP forming) Energy production and conversion 15899821 Common acaB-10 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-10) SSO3113 89 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15899864 Common lipA lipoyl synthase SSO3158 191 COG0320 LipA, Lipoate synthase Coenzyme metabolism 15898406 Nonpathogen - Transporter (proton symporter) SSO1591 2 None None None 15898596 Nonpathogen - Partial transposase in ISC1229 SSO1799 1 None None None 15897976 Common bioB Biotin synthase (bioB) SSO1115 21 COG2516 COG2516, Biotin synthase-related enzyme General function prediction only 15899603 Common - hypothetical protein SSO2890 69 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15898696 Common - NADH oxidase SSO1900 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 15899914 Nonpathogen - hypothetical protein SSO3213 3 None None None 15897331 Nonpathogen pcnA-like Proliferating cell nuclear antigen putative homolog (PCNA-like) (pcnA-like) SSO0397 17 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 15897314 Common - Sugar phosphate nucleotydyl transferase SSO0381 211 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 15897458 Common acaB-1 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-1) SSO0534 86 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15898721 Nonpathogen - Partial ORF in transposon ISC1212 SSO9250 1 None None None 15898338 Nonpathogen - hypothetical protein SSO1512 2 COG1367 COG1367, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15897030 Nonpathogen - hypothetical protein SSO0064 34 COG1608 COG1608, Predicted archaeal kinase General function prediction only 15899627 Common - hypothetical protein SSO2914 16 COG0730 COG0730, Predicted permeases General function prediction only 15899939 Common - Dolichol-phosphate mannosyltransferase SSO3241 194 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15897112 Common - acetyl-lysine deacetylase SSO0162 140 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15899692 Nonpathogen - hypothetical protein SSO2982 2 None None None 15899150 Nonpathogen - hypothetical protein SSO2399 30 COG1701 COG1701, Uncharacterized protein conserved in archaea Function unknown 15897244 Common tkt-2 Transketolase, C-terminal section (tkt-2) SSO0299 230 COG3958 COG3958, Transketolase, C-terminal subunit Carbohydrate transport and metabolism 15896999 Common - Acetylpolyamine aminohydrolase SSO0028 162 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 15897520 Nonpathogen - hypothetical protein SSO0604 33 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 15897767 Common asd-1 aspartate-semialdehyde dehydrogenase SSO0874 191 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 15897468 Nonpathogen - hypothetical protein SSO0545 1 None None None 15897119 Nonpathogen - hypothetical protein SSO0169 2 None None None 15897268 Common NuoL NADH dehydrogenase subunit L (NuoL) SSO0328 209 COG1009 NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Energy production and conversion / Inorganic ion transport and metabolism 15897825 Nonpathogen - hypothetical protein SSO0944 7 COG2512 COG2512, Uncharacterized membrane-associated protein/domain Function unknown 15897547 Common purF-2 Amidophosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (ATase) (GPAT) (purF-2) SSO0633 229 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 15897806 Common gcvT glycine cleavage system aminomethyltransferase T SSO0919 179 COG0404 GcvT, Glycine cleavage system T protein (aminomethyltransferase) Amino acid transport and metabolism 15897818 Common ansA glutamyl-tRNA(Gln) amidotransferase subunit D SSO0938 131 COG0252 AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis 15899254 Nonpathogen - Esterase, putative SSO2518 1 COG2267 PldB, Lysophospholipase Lipid metabolism 15897197 Common cyaB Adenylate cyclase, cyaB-type, putative (cyaB) SSO0253 33 COG1437 CyaB, Adenylate cyclase, class 2 (thermophilic) Nucleotide transport and metabolism 15898128 Nonpathogen - Second ORF in transposon ISC1212 SSO1285 1 None None None 15899459 Common - hypothetical protein SSO2744 105 COG1533 SplB, DNA repair photolyase DNA replication, recombination, and repair 15899260 Nonpathogen - hypothetical protein SSO2524 6 COG3427 COG3427, Uncharacterized conserved protein Function unknown 15897067 Nonpathogen - hypothetical protein SSO0107 4 None None None 15898730 Nonpathogen - hypothetical protein SSO1929 1 COG5550 COG5550, Predicted aspartyl protease Posttranslational modification, protein turnover, chaperones 15898436 Nonpathogen - Transposase ISC1234 SSO1616 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15898469 Nonpathogen - hypothetical protein SSO1651 5 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899791 Nonpathogen - hypothetical protein SSO3082 1 None None None 15899750 Common - ABC transporter, ATP binding protein SSO3045 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15897733 Common rfbC-1 dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-1) SSO0833 170 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 15899193 Common dinP DNA polymerase IV SSO2448 185 COG0389 DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair DNA replication, recombination, and repair 15899343 Common dppB-3 Dipeptide ABC transporter permease protein (dppB-3) SSO2618 219 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15899610 Common - Copper binding protein SSO11412 12 COG2608 CopZ, Copper chaperone Inorganic ion transport and metabolism 15898220 Nonpathogen - hypothetical protein SSO1381 4 COG5551 COG5551, Uncharacterized conserved protein Function unknown 15899112 Nonpathogen - hypothetical protein SSO10269 1 None None None 15899258 Common php Aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (php) SSO2522 35 COG1735 Php, Predicted metal-dependent hydrolase with the TIM-barrel fold General function prediction only 15897912 Common - Ribose phosphate pyrophosphokinase SSO1045 243 COG0462 PrsA, Phosphoribosylpyrophosphate synthetase Nucleotide transport and metabolism / Amino acid transport and metabolism 15897348 Nonpathogen rpoE2 DNA-directed RNA polymerase, subunit E'' (rpoE2) SSO5798 23 COG2093 COG2093, DNA-directed RNA polymerase, subunit E'' Transcription 15897140 Common lig ATP-dependent DNA ligase SSO0189 102 COG1793 CDC9, ATP-dependent DNA ligase DNA replication, recombination, and repair 15898777 Nonpathogen - Hypothetical protein, plasmid pNOB8 orfs 620 and 630A homolog SSO1981 3 None None None 15899170 Common - AAA family ATPase SSO2420 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 15898336 Nonpathogen - Transposase ISC1225 SSO1509 5 None None None 15899874 Common - VirR related conserved hypothetical protein SSO3170 85 COG1720 COG1720, Uncharacterized conserved protein Function unknown 15899160 Nonpathogen - hypothetical protein SSO2408 29 COG1634 COG1634, Uncharacterized Rossmann fold enzyme General function prediction only 15898359 Common - hypothetical protein SSO1532 131 COG2141 COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Energy production and conversion 15897408 Nonpathogen - hypothetical protein SSO0482 3 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 15898481 Nonpathogen - hypothetical protein SSO1664 2 COG1522 Lrp, Transcriptional regulators Transcription 15897561 Common - hypothetical protein SSO0651 33 COG1839 COG1839, Uncharacterized conserved protein Function unknown 15897849 Nonpathogen eiF5A translation initiation factor IF-5A SSO0970 35 COG0231 Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Translation, ribosomal structure and biogenesis 15897602 Nonpathogen rpl15p 50S ribosomal protein L15P SSO0696 32 COG0200 RplO, Ribosomal protein L15 Translation, ribosomal structure and biogenesis 15897189 Common - hypothetical protein SSO0244 85 COG2509 COG2509, Uncharacterized FAD-dependent dehydrogenases General function prediction only 15899464 Nonpathogen - hypothetical protein SSO2749 28 COG1633 COG1633, Uncharacterized conserved protein Function unknown 15897017 Common - hypothetical protein SSO0046 236 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 15899307 Common - hypothetical protein SSO2575 55 COG3975 COG3975, Predicted protease with the C-terminal PDZ domain General function prediction only 15899406 Nonpathogen - hypothetical protein SSO2684 1 None None None 15898028 Nonpathogen - hypothetical protein SSO1175 5 None None None 15899096 Nonpathogen - Transport protein, putative SSO2338 4 None None None 15897246 Common aroG 3-deoxy-7-phosphoheptulonate synthase SSO0304 185 COG2876 AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase Amino acid transport and metabolism 15897718 Nonpathogen - hypothetical protein SSO0817 1 None None None 15897491 Common - pyridoxine biosynthesis protein SSO0570 87 COG0214 SNZ1, Pyridoxine biosynthesis enzyme Coenzyme metabolism 15896979 Common - Deacetylase, putative SSO0009 160 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 15898550 Common - Second ORF in transposon ISC1078 SSO1749 24 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897090 Nonpathogen - hypothetical protein SSO0132 1 None None None 15897909 Nonpathogen - hypothetical protein SSO1042 23 COG1931 COG1931, Uncharacterized protein conserved in archaea Function unknown 15899300 Common - Membrane conserved hypothetical protein SSO2568 95 COG1814 COG1814, Uncharacterized membrane protein Function unknown 15897374 Common speB-1 Agmatinase (agmatine ureohydrolase) (speB-1) SSO0445 158 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 15898537 Nonpathogen - Partial transposase ISC1359 SSO1735 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898971 Nonpathogen - Thermopsine precursor related protein SSO2194 4 None None None 15898804 Nonpathogen - hypothetical protein SSO2013 5 None None None 15897928 Common lplA-like1 Lipoate protein ligase A, hypothetical (lplA-like1) SSO1060 45 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 15898880 Nonpathogen - hypothetical protein SSO2096 4 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898629 Nonpathogen - hypothetical protein SSO1827 2 None None None 15899519 Nonpathogen cbsA Cytochrome b558/566, subunit A (cbsA) SSO2801 3 COG3889 COG3889, Predicted solute binding protein General function prediction only 15897723 Common - hypothetical protein SSO0822 35 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899471 Common porB-2 pyruvate ferredoxin oxidoreductase subunit beta SSO2756 122 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 15897178 Nonpathogen rps28e 30S ribosomal protein S28e SSO5479 33 COG2053 RPS28A, Ribosomal protein S28E/S33 Translation, ribosomal structure and biogenesis 15899021 Nonpathogen - hypothetical protein SSO2248 7 COG1630 COG1630, Uncharacterized protein conserved in archaea Function unknown 15899717 Common - hypothetical protein SSO3010 14 None None None 15898530 Nonpathogen - hypothetical protein SSO1726 17 COG1336 COG1336, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898964 Nonpathogen - hypothetical protein SSO2186 7 None None None 15899524 Nonpathogen - hypothetical protein SSO2807 1 None None None 15897627 Nonpathogen - hypothetical protein SSO0724 2 COG2457 COG2457, Uncharacterized conserved protein Function unknown 15897540 Common - GTP-binding protein SSO0625 222 COG1084 COG1084, Predicted GTPase General function prediction only 15898866 Common arf Archaeal Rieske-type ferredoxin (arf) SSO2080 53 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 15898048 Common sixA Phosphohistidine phosphatase (sixA) SSO1195 89 COG2062 SixA, Phosphohistidine phosphatase SixA Signal transduction mechanisms 15898418 Nonpathogen - Second ORF in transposon ISC1229 SSO1602 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898179 Common - Second ORF in transposon ISC1778 SSO1336 66 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898957 Common - SAM-dependent methyltransferase, putative SSO2177 75 COG2227 UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase Coenzyme metabolism 15897302 Common - ABC transporter, ATP binding protein SSO0367 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15897851 Nonpathogen - hypothetical protein SSO0972 29 COG1258 COG1258, Predicted pseudouridylate synthase Translation, ribosomal structure and biogenesis 15897934 Common modA Molybdenum transport protein ModA related protein (modA) SSO1066 14 COG2005 ModE, N-terminal domain of molybdenum-binding protein General function prediction only 15898282 Nonpathogen - hypothetical protein SSO1444 6 None None None 15897097 Nonpathogen - Primase (Amino-end Fragment) SSO0142 1 None None None 15898575 Common - hypothetical protein SSO1777 10 COG1606 COG1606, ATP-utilizing enzymes of the PP-loop superfamily General function prediction only 15897392 Nonpathogen - hypothetical protein SSO0464 30 COG1994 SpoIVFB, Zn-dependent proteases General function prediction only 15898599 Nonpathogen - hypothetical protein SSO8938 2 None None None 15897740 Nonpathogen - hypothetical protein SSO0844 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897759 Nonpathogen - hypothetical protein SSO0865 6 None None None 15899068 Common cbiH precorrin-3B C17-methyltransferase SSO2306 176 COG1010 CobJ, Precorrin-3B methylase Coenzyme metabolism 15899671 Nonpathogen - hypothetical protein SSO11571 1 None None None 15899286 Nonpathogen - hypothetical protein SSO2552 4 None None None 15896977 Nonpathogen - hypothetical protein SSO0007 12 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 15897060 Common - hypothetical protein SSO0099 132 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 15897125 Common - hypothetical protein SSO0174 47 COG0585 COG0585, Uncharacterized conserved protein Function unknown 15897616 Nonpathogen rpl29AB 50S ribosomal protein L29 SSO6397 3 COG0255 RpmC, Ribosomal protein L29 Translation, ribosomal structure and biogenesis 15898994 Nonpathogen - hypothetical protein SSO2220 8 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899435 Common - Aminotransferase SSO2720 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 15898219 Nonpathogen - hypothetical protein SSO1380 1 None None None 15897428 Common leuS leucyl-tRNA synthetase SSO0504 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15897618 Common rpl22p 50S ribosomal protein L22P SSO0713 137 COG0091 RplV, Ribosomal protein L22 Translation, ribosomal structure and biogenesis 15897281 Nonpathogen nusG transcription antitermination protein NusG SSO0347 34 COG0250 NusG, Transcription antiterminator Transcription 15899444 Common - Amino acid transporter, putative SSO2728 50 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15899382 Nonpathogen - Partial transposase in ISC1173 SSO2659 1 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15899484 Common - hypothetical protein SSO2769 64 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15898249 Nonpathogen - hypothetical protein SSO1409 2 None None None 15898395 Common - Molybdopterin oxidoreductase, iron-sulfur binding subunit SSO1579 162 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 15899457 Common - hypothetical protein SSO2742 75 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 15899416 Nonpathogen - hypothetical protein SSO2699 4 None None None 15899035 Common mcmA2 Methylmalonyl-CoA mutase, alpha-subunit, chain B (mcmA2) SSO2266 124 COG2185 Sbm, Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) Lipid metabolism 15899377 Common - hypothetical protein SSO2653 70 COG0671 PgpB, Membrane-associated phospholipid phosphatase Lipid metabolism 15899135 Nonpathogen - hypothetical protein SSO2382 22 COG2412 COG2412, Uncharacterized conserved protein Function unknown 15897396 Nonpathogen - hypothetical protein SSO0467 2 None None None 15897744 Nonpathogen - hypothetical protein SSO0845 1 None None None 15897316 Common - Mevalonate kinase SSO0383 55 COG1577 ERG12, Mevalonate kinase Lipid metabolism 15897481 Common atpI V-type ATP synthase subunit I SSO0559 39 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 15897264 Common NuoD NADH dehydrogenase subunit D SSO0324 191 COG0649 NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 Energy production and conversion 15899364 Nonpathogen cutC-2 Carbon monoxide dehydrogenase, small chain. Carboxy-end fragment (cutC-2) SSO10802 1 None None None 15898566 Nonpathogen - First ORF in transposon ISC1212 SSO8875 1 None None None 15898814 Nonpathogen - hypothetical protein SSO2023 14 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 15897065 Common aspB-1 Aspartate aminotransferase (aspB-1) SSO0104 233 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 15899070 Common - Cofactor biosynthesis protein SSO2309 102 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15897462 Nonpathogen - hypothetical protein SSO0538 1 None None None 15897233 Common - Inorganic phosphate permease related protein SSO0290 147 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897590 Common gltB Glutamate synthase (NADPH) subunit alpha (gltB) SSO0684 203 COG0069 GltB, Glutamate synthase domain 2 Amino acid transport and metabolism 15898772 Common - hypothetical protein SSO1976 100 COG0393 COG0393, Uncharacterized conserved protein Function unknown 15899204 Nonpathogen - hypothetical protein SSO2460 16 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 15897788 Nonpathogen - hypothetical protein SSO0902 2 None None None 15899026 Common - hypothetical protein SSO2254 223 COG0063 COG0063, Predicted sugar kinase Carbohydrate transport and metabolism 15898149 Common - hypothetical protein SSO1308 89 COG2308 COG2308, Uncharacterized conserved protein Function unknown 15899398 Common - Tricorn protease interacting factor F3 SSO2675 166 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 15899836 Common - Iron-sulfur protein, conserved putative SSO3130 95 COG1139 COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain Energy production and conversion 15897915 Nonpathogen - DNA primase small subunit SSO1048 31 COG1467 PRI1, Eukaryotic-type DNA primase, catalytic (small) subunit DNA replication, recombination, and repair 15899002 Nonpathogen - hypothetical protein SSO2227 3 None None None 15899492 Nonpathogen - hypothetical protein SSO2777 2 None None None 15898067 Nonpathogen - hypothetical protein SSO1215 1 None None None 15898331 Common msr methionine sulfoxide reductase A SSO1503 205 COG0225 MsrA, Peptide methionine sulfoxide reductase Posttranslational modification, protein turnover, chaperones 15897165 Common rpS7AB 30S ribosomal protein S7P SSO0217 210 COG0049 RpsG, Ribosomal protein S7 Translation, ribosomal structure and biogenesis 15898303 Common - hypothetical protein SSO1471 12 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 15899185 Nonpathogen - hypothetical protein SSO2437 4 COG2222 AgaS, Predicted phosphosugar isomerases Cell envelope biogenesis, outer membrane 15898950 Nonpathogen - hypothetical protein SSO2170 2 None None None 15898125 Common dppC-2 Oligo/dipeptide transport, permease protein (dppC-2) SSO1283 217 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898839 Nonpathogen - hypothetical protein SSO2048 1 None None None 15898134 Common - hypothetical protein SSO1291 13 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15899805 Nonpathogen - hypothetical protein SSO3095 1 None None None 15897273 Nonpathogen - hypothetical protein SSO0335 4 None None None 15898491 Nonpathogen - hypothetical protein SSO1676 2 None None None 15897968 Nonpathogen - hypothetical protein SSO1106 2 None None None 15897513 Common hisF Imidazoleglycerol-phosphate synthase, cyclase subunit (hisF) SSO0597 215 COG0107 HisF, Imidazoleglycerol-phosphate synthase Amino acid transport and metabolism 15897650 Nonpathogen - hypothetical protein SSO0750 33 COG1491 COG1491, Predicted RNA-binding protein Translation, ribosomal structure and biogenesis 15899702 Nonpathogen - hypothetical protein SSO11637 1 None None None 15899793 Nonpathogen - hypothetical protein SSO3084 5 COG2044 COG2044, Predicted peroxiredoxins General function prediction only 15897969 Nonpathogen - hypothetical protein SSO1107 2 None None None 15898520 Nonpathogen - hypothetical protein SSO1710 3 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 15896984 Nonpathogen - hypothetical protein SSO5027 1 None None None 15899391 Common - ABC transporter, permease protein SSO2668 216 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898027 Common - Na(+)/Ca(2+) exchanging protein related SSO1174 26 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 15898648 Nonpathogen - Second ORF in transposon ISC1359 SSO1853 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897080 Common gspE-1 Type II secretion system protein, virB homolog (gspE-1) SSO0120 228 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 15898234 Nonpathogen - hypothetical protein SSO1393 7 COG4006 COG4006, Uncharacterized protein conserved in archaea Function unknown 15898211 Nonpathogen - Partial transposase ISC1173 SSO1372 1 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15899008 Nonpathogen - hypothetical protein SSO2233 5 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15898451 Nonpathogen - hypothetical protein SSO1634 7 None None None 15897376 Nonpathogen - Protein translation factor SUI1 homolog SSO5866 20 COG0023 SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis 15898796 Nonpathogen - hypothetical protein SSO2002 2 None None None 15899698 Common - (Phospho) mevalonate kinase, putative SSO2988 18 COG3890 ERG8, Phosphomevalonate kinase Lipid metabolism 15897947 Common - hypothetical protein SSO1080 206 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 15898743 Common - hypothetical protein SSO1945 38 COG3342 COG3342, Uncharacterized conserved protein Function unknown 15899249 Common acd-4 Acyl-CoA dehydrogenase (acd-4) SSO2511 151 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15897597 Common cmK cytidylate kinase SSO0692 37 COG1102 Cmk, Cytidylate kinase Nucleotide transport and metabolism 15898082 Nonpathogen tmoD Toluene-4-monooxygenase system protein D. (tmoD) SSO1231 6 None None None 15899665 Nonpathogen - ORF in partial transposon ISC774 SSO11553 1 None None None 15898252 Nonpathogen - hypothetical protein SSO1413 1 None None None 15897902 Common - ABC transporter, ATP binding protein. SSO1034 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 15899167 Common - Dihydropteroate synthase, putative SSO2415 31 COG0294 FolP, Dihydropteroate synthase and related enzymes Coenzyme metabolism 15898762 Common - Second ORF in transposon ISC1913 SSO9368 23 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15898782 Common - hypothetical protein SSO1987 18 COG1336 COG1336, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898465 Common mdlC Benzoylformate decarboxylase (mdlC) SSO1647 218 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15898663 Nonpathogen - hypothetical protein SSO1870 3 None None None 15898259 Nonpathogen - Transposase ISC1234 SSO1420 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15899824 Common - Tricorn protease interacting factor F1 SSO3115 129 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15899143 Common ppa inorganic pyrophosphatase SSO2390 186 COG0221 Ppa, Inorganic pyrophosphatase Energy production and conversion 15899110 Common - Geranylgeranyl hydrogenase, putative SSO2353 41 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 15897108 Common - Transcriptional regulator SSO0157 137 COG1522 Lrp, Transcriptional regulators Transcription 15897995 Common - Na(+)/H(+) antiporter SSO1138 117 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 15898250 Common - Transposase ISC1058 SSO1410 17 None None None 15898284 Nonpathogen - Transposase ISC1359 SSO1448 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899084 Nonpathogen - hypothetical protein SSO2326 2 None None None 15898984 Common - hypothetical protein SSO2209 17 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15897836 Common gatA-2 Glutamyl-tRNA amidotransferase, subunit A (gatA-2) SSO0957 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 15898846 Common - Sugar transport related protein SSO2057 154 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897935 Common - Intracellular proteinase SSO1067 160 COG0693 ThiJ, Putative intracellular protease/amidase General function prediction only 15899646 Nonpathogen - hypothetical protein SSO2937 5 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 15898500 Nonpathogen - Partial transposase ISC1190 SSO8687 2 None None None 15898455 Nonpathogen - hypothetical protein SSO1637 1 None None None 15899231 Common clcE Maleylacetate reductase (clcE) SSO2490 145 COG1454 EutG, Alcohol dehydrogenase, class IV Energy production and conversion 15899271 Common - phosphoenolpyruvate carboxykinase SSO2537 59 COG1274 PckA, Phosphoenolpyruvate carboxykinase (GTP) Energy production and conversion 15897842 Common topR-2 reverse gyrase SSO0963 247 COG1110 COG1110, Reverse gyrase DNA replication, recombination, and repair 15897385 Nonpathogen - hypothetical protein SSO0453 18 COG1801 COG1801, Uncharacterized conserved protein Function unknown 15898198 Common - Dolichyl-phosphate mannose synthase related protein SSO1357 125 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15899786 Nonpathogen - Partial ORF in transposon ISC1212 SSO11917 1 None None None 15897220 Nonpathogen rpoG DNA-directed RNA polymerase, subunit G (rpoG) SSO0277 2 None None None 15897237 Nonpathogen - exosome complex RNA-binding protein Csl4 SSO0292 23 COG1096 COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) Translation, ribosomal structure and biogenesis 15898851 Common acaB-3 acetyl-CoA acetyltransferase SSO2062 90 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15898293 Common - Penicillin acylase precursor SSO1460 65 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 15899365 Common cutA-4 Carbon monoxide dehydrogenase, large chain (cutA-4) SSO2639 112 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15899788 Common - Membrane transporter SSO3079 135 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15897908 Common adkA-like Adenylate kinase related protein (adkA-like) SSO1041 37 COG0237 CoaE, Dephospho-CoA kinase Coenzyme metabolism 15898745 Nonpathogen - hypothetical protein SSO1947 20 COG3342 COG3342, Uncharacterized conserved protein Function unknown 15898919 Common - Membrane conserved hypothetical protein SSO2135 157 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 15898925 Nonpathogen - hypothetical protein SSO2142 1 None None None 15899755 Common - hypothetical protein SSO3050 11 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15897553 Common carA carbamoyl phosphate synthase small subunit SSO0640 234 COG0505 CarA, Carbamoylphosphate synthase small subunit Amino acid transport and metabolism / Nucleotide transport and metabolism 15899862 Common lplA-1 Lipoate-protein ligase A (lplA-1) SSO3157 75 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 15898645 Nonpathogen - Second ORF in transposon ISC1359 SSO1847 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899843 Nonpathogen - hypothetical protein SSO3140 2 None None None 15899922 Common - Sugar phosphate nucleotydyl transferase SSO3219 231 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 15897452 Common pgk phosphoglycerate kinase SSO0527 247 COG0126 Pgk, 3-phosphoglycerate kinase Carbohydrate transport and metabolism 15898637 Nonpathogen - Transposase, putative amino-end fragment SSO9043 6 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898014 Common - Haloacetate dehalogenase SSO1159 68 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15897254 Common - DNA helicase SSO0313 42 COG1199 DinG, Rad3-related DNA helicases Transcription / DNA replication, recombination, and repair 15898099 Common - Transcriptional regulator SSO1255 138 COG1802 GntR, Transcriptional regulators Transcription 15898918 Common - Sugar transport related protein SSO2134 156 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897297 Common moaA Molybdenum cofactor biosynthesis protein A (moaA) SSO0362 206 COG2896 MoaA, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 15899137 Common rnhB Ribonuclease HII (rnhB) SSO2384 236 COG0164 RnhB, Ribonuclease HII DNA replication, recombination, and repair 15899814 Common ilvD Dihydroxy-acid dehydratase (ilvD) SSO3107 210 COG0129 IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase Amino acid transport and metabolism / Carbohydrate transport and metabolism 15899226 Nonpathogen - hypothetical protein SSO2485 6 COG0707 MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane 15898667 Common - hypothetical protein SSO1874 5 COG4243 COG4243, Predicted membrane protein Function unknown 15897808 Nonpathogen - hypothetical protein SSO0921 32 COG1938 COG1938, Archaeal enzymes of ATP-grasp superfamily General function prediction only 15897382 Nonpathogen - hypothetical protein SSO0451 7 COG5491 VPS24, Conserved protein implicated in secretion Cell motility and secretion 15898794 Common - ATP-dependent RNA helicase homolog SSO1999 92 COG1203 COG1203, Predicted helicases General function prediction only 15899048 Nonpathogen - bifunctional phosphoglucose/phosphomannose isomerase SSO2281 15 COG0166 Pgi, Glucose-6-phosphate isomerase Carbohydrate transport and metabolism 15899908 Common - Protein synthesis inhibitor, putative SSO3206 183 COG0251 TdcF, Putative translation initiation inhibitor, yjgF family Translation, ribosomal structure and biogenesis 15898201 Common - Transport membrane protein (permease) SSO1361 60 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899636 Nonpathogen - Partial ORF in transposase ISC1217 SSO2924 1 None None None 15897897 Common fdhF-1 Formate dehydrogenase Alpha subunit (fdhF-1) SSO1029 193 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 15898152 Common paaF-3 Enoyl CoA hydratase (paaF-3) SSO1311 187 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15898671 Nonpathogen - hypothetical protein SSO1877 3 COG5466 COG5466, Predicted small metal-binding protein Function unknown 15898908 Common - Second ORF in transposon ISC1316 SSO2124 73 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898624 Nonpathogen - Partial transposase ISC1359 SSO1822 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899822 Common fabG-10 3-oxoacyl-(acyl carrier protein) reductase (fabG-10) SSO3114 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15898682 Nonpathogen - hypothetical protein SSO1885 2 None None None 15898824 Nonpathogen - hypothetical protein SSO2032 2 None None None 15897801 Nonpathogen - hypothetical protein SSO0914 1 None None None 15897538 Nonpathogen - hypothetical protein SSO0622 16 COG1590 COG1590, Uncharacterized conserved protein Function unknown 15898614 Nonpathogen - hypothetical protein SSO8979 1 None None None 15898132 Common - hypothetical protein SSO1289 54 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15899265 Nonpathogen - hypothetical protein SSO2530 13 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15897472 Common - hypothetical protein SSO0550 14 COG0668 MscS, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15898276 Nonpathogen - hypothetical protein SSO1438 2 None None None 15898890 Nonpathogen - hypothetical protein SSO2106 8 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15898931 Common cutA-3 Carbon monoxide dehydrogenase, large chain (cutA-3) SSO2150 117 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15898726 Common - Second ORF in partial transposon ISC1913 SSO9270 22 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897881 Common argE-2 succinyl-diaminopimelate desuccinylase SSO1007 197 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15898046 Common tmK-2 Thymidylate kinase (tmK-2) SSO1192 143 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 15899918 Common - Gamma-glutamyltranspeptidase, hypothetical SSO3216 148 COG0405 Ggt, Gamma-glutamyltransferase Amino acid transport and metabolism 15899460 Nonpathogen - hypothetical protein SSO2745 5 COG4831 COG4831, Uncharacterized conserved protein Function unknown 15899315 Common - hypothetical protein SSO2586 78 COG2079 PrpD, Uncharacterized protein involved in propionate catabolism General function prediction only 15898883 Nonpathogen - Transposase ISC1234 SSO2099 2 None None None 15899414 Common htpX-like Heat shock protein X, protease htpX homolog, putative (htpX-like) SSO2694 91 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 15899425 Common - Hydrogenase expression/formation factor related protein SSO2708 91 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 15897795 Common topA DNA topoisomerase III SSO0907 247 COG0550 TopA, Topoisomerase IA DNA replication, recombination, and repair 15898736 Common - hypothetical protein SSO1936 19 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 15897433 Nonpathogen - hypothetical protein SSO0508 1 None None None 15899505 Common - hypothetical protein SSO2787 134 COG0586 DedA, Uncharacterized membrane-associated protein Function unknown 15897356 Nonpathogen - hypothetical protein SSO5826 9 COG3609 COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain Transcription 15897024 Nonpathogen - hypothetical protein SSO0054 5 COG2266 COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase Coenzyme metabolism 15897057 Common - hypothetical protein SSO0095 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 15899930 Common htpX-2 heat shock protein HtpX SSO3231 115 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 15898057 Nonpathogen - hypothetical protein SSO1204 4 None None None 15898313 Nonpathogen - hypothetical protein SSO1483 7 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899191 Common rtcA RNA 3'-terminal-phosphate cyclase SSO2446 47 COG0430 RCL1, RNA 3'-terminal phosphate cyclase RNA processing and modification 15898893 Nonpathogen - hypothetical protein SSO2109 5 None None None 15898405 Common - hypothetical protein SSO1590 7 COG4194 COG4194, Predicted membrane protein General function prediction only 15898442 Nonpathogen - Glycosyltransferase SSO1622 9 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15898930 Nonpathogen - hypothetical protein SSO2148 9 COG4911 COG4911, Uncharacterized conserved protein Function unknown 15899911 Common ilvB-6 acetolactate synthase catalytic subunit SSO3210 219 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15897172 Common rpoB1 DNA-directed RNA polymerase subunit B' SSO0227 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 15898947 Nonpathogen - hypothetical protein SSO2166 4 None None None 15897681 Nonpathogen - hypothetical protein SSO0779 13 COG1341 COG1341, Predicted GTPase or GTP-binding protein General function prediction only 15898360 Common - Homogentisate oxygenase related protein SSO1533 51 COG3508 HmgA, Homogentisate 1,2-dioxygenase Secondary metabolites biosynthesis, transport, and catabolism 15899545 Nonpathogen - hypothetical protein SSO2830 1 None None None 15897827 Nonpathogen - hypothetical protein SSO0947 15 COG1340 COG1340, Uncharacterized archaeal coiled-coil protein Function unknown 15899682 Nonpathogen soxE Quinol oxidase-2, sulfocyanin (blue copper protein) (soxE) SSO2972 3 None None None 15896986 Nonpathogen - hypothetical protein SSO0014 9 COG4272 COG4272, Predicted membrane protein Function unknown 15897567 Common thrA/hom Homoserine dehydrogenase (thrA/hom) SSO0657 217 COG0460 ThrA, Homoserine dehydrogenase Amino acid transport and metabolism 15898160 Common - Second ORF in transposon ISC1316 SSO7675 23 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897679 Common radA-like DNA repair protein radA homolog (radA-like) SSO0777 27 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 15897044 Common tyrS tyrosyl-tRNA synthetase SSO0078 146 COG0162 TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898446 Common - Glycosyltransferase SSO1626 30 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899621 Common crtI Phytoene dehydrogenase (desaturase) (crtI) SSO2907 74 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15899125 Nonpathogen - hypothetical protein SSO2369 5 None None None 15898598 Nonpathogen - First ORF in transposon ISC1212 SSO8936 1 None None None 15899696 Nonpathogen - hypothetical protein SSO2986 5 COG3432 COG3432, Predicted transcriptional regulator Transcription 15899408 Nonpathogen - hypothetical protein SSO2687 3 COG1531 COG1531, Uncharacterized protein conserved in archaea Function unknown 15899558 Nonpathogen - Third ORF in transposon ISC1190 SSO11280 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897873 Common nadB Aspartate oxidase (nadB) SSO0997 227 COG0029 NadB, Aspartate oxidase Coenzyme metabolism 15898723 Common rfbC-2 dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) SSO1923 171 COG1898 RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes Cell envelope biogenesis, outer membrane 15898996 Common trxB-1 Thioredoxin reductase (trxB-1) SSO2222 247 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 15897473 Nonpathogen - hypothetical protein SSO0551 25 COG2042 COG2042, Uncharacterized conserved protein Function unknown 15897346 Nonpathogen - hypothetical protein SSO0414 8 COG1412 COG1412, Uncharacterized proteins of PilT N-term./Vapc superfamily General function prediction only 15898222 Nonpathogen - hypothetical protein SSO1383 2 None None None 15897522 Common - Transcriptional regulator, putative SSO0606 154 COG1522 Lrp, Transcriptional regulators Transcription 15899152 Nonpathogen - hypothetical protein SSO2401 6 None None None 15897771 Nonpathogen - hypothetical protein SSO6716 1 None None None 15897922 Nonpathogen - hypothetical protein SSO1053 2 None None None 15898434 Common - Glycosyltransferase, putative SSO1614 120 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899256 Common hpcE-1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1) SSO2520 168 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 15897338 Common - Cobyrinic acid A,C diamisynthase (CBIA) SSO0404 136 COG1797 CobB, Cobyrinic acid a,c-diamide synthase Coenzyme metabolism 15899615 Common - hypothetical protein SSO2901 73 COG2120 COG2120, Uncharacterized proteins, LmbE homologs Function unknown 15898004 Common - Arginine deiminase, hypothetical SSO1148 31 COG2235 ArcA, Arginine deiminase Amino acid transport and metabolism 15898543 Nonpathogen doxA Terminal quinol oxidase, subunit II (doxA) SSO1741 3 None None None 15898584 Nonpathogen - hypothetical protein SSO8910 1 None None None 15899584 Common - hypothetical protein SSO2872 48 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15899625 Common sat sulfate adenylyltransferase SSO2912 63 COG2046 MET3, ATP sulfurylase (sulfate adenylyltransferase) Inorganic ion transport and metabolism 15898470 Common - Transposase ISC1316 SSO1652 77 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899673 Nonpathogen - hypothetical protein SSO2964 3 None None None 15897649 Common ksgA dimethyladenosine transferase SSO0749 58 COG0030 KsgA, Dimethyladenosine transferase (rRNA methylation) Translation, ribosomal structure and biogenesis 15899013 Common bps2 BPS2 protein homolog (bps2) SSO2241 29 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15899563 Common - ABC transporter, permease (glucose) SSO2848 135 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15897580 Common - hypothetical protein SSO0673 39 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15899054 Common - Probable acyl-coenzyme a thioester hydrolase SSO2287 102 COG1607 COG1607, Acyl-CoA hydrolase Lipid metabolism 15897914 Nonpathogen pcnA-2 Proliferating cell nuclear antigen homolog (PCNA) (pcnA-2) SSO1047 31 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 15899700 Nonpathogen - hypothetical protein SSO2990 1 None None None 15897147 Common - hypothetical protein SSO0197 49 COG0478 COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain Signal transduction mechanisms 15898702 Common - Allantoin permease SSO1905 58 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 15899618 Common - hypothetical protein SSO2904 5 None None None 15899018 Nonpathogen - hypothetical protein SSO2245 2 None None None 15899043 Common fabG-5 3-oxoacyl-(acyl carrier protein) reductase (fabG-5) SSO2276 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15899752 Common - ABC transporter, permease SSO3047 175 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15899236 Common acaB-5 acetyl-CoA acetyltransferase SSO2496 187 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15899742 Common dapA-2 Dihydrodipicolinate synthase (dapA-2) SSO3035 234 COG0329 DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane 15897731 Common - Sugar phosphate nucleotydyl transferase SSO0831 237 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 15897137 Nonpathogen soxA-like Sarcosine oxidase, subunit alpha related (soxA), putative (soxA-like) SSO0186 12 COG2906 Bfd, Bacterioferritin-associated ferredoxin Inorganic ion transport and metabolism 15898224 Common - Second ORF in transposon ISC1078 SSO1385 24 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898874 Common - Transposase ISC1078 SSO2090 35 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897292 Nonpathogen - Phosphate regulatory protein, putative SSO0356 26 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 15899446 Common - hypothetical protein SSO2730 19 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15897978 Common - Acetoin utilization protein SSO1117 161 COG0123 AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism 15899380 Common soxB Quinol oxidase (SoxABC), cytochrome aa3 subunit (soxB) SSO2657 175 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 15897765 Nonpathogen - hypothetical protein SSO0872 32 COG1602 COG1602, Uncharacterized conserved protein Function unknown 15897205 Nonpathogen - hypothetical protein SSO0260 8 COG4888 COG4888, Uncharacterized Zn ribbon-containing protein General function prediction only 15898660 Nonpathogen - hypothetical protein SSO1868 15 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15898699 Common acsA-3 Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-3) SSO1903 221 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15899731 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO3025 1 None None None 15897753 Common argS arginyl-tRNA synthetase SSO0857 249 COG0018 ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898242 Common - ATP-dependent RNA helicase related protein SSO1402 71 COG1203 COG1203, Predicted helicases General function prediction only 15897706 Nonpathogen - Partial transposase in ISC1190 SSO0803 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899774 Common - Arabinose ABC transporter, ATP-binding protein SSO3069 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15898694 Nonpathogen - hypothetical protein SSO1899 4 None None None 15899211 Common - ABC transporter, ATP binding protein, putative SSO2469 249 COG1116 TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Inorganic ion transport and metabolism 15897853 Common fabG-1 3-oxoacyl-(acyl carrier protein) reductase (fabG-1) SSO0975 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15899371 Nonpathogen - hypothetical protein SSO2645 1 None None None 15898689 Common - ABC transporter, ATP binding protein. SSO1893 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15899694 Nonpathogen - hypothetical protein SSO2984 3 None None None 15897444 Nonpathogen - hypothetical protein SSO0521 1 None None None 15897690 Nonpathogen - Transposase ISC1439 SSO0787 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898495 Common - Partial transposase in ISC1316 SSO1681 47 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899334 Nonpathogen - hypothetical protein SSO2608 1 None None None 15898529 Nonpathogen - hypothetical protein SSO1725 1 None None None 15897988 Common hdrB-1 Heterodisulfite reductase, subunit B (hdrB-1) SSO1129 25 COG2048 HdrB, Heterodisulfide reductase, subunit B Energy production and conversion 15898075 Common - Catechol 2,3-dioxygenase (metapyrocatechase) SSO1223 34 None None None 15897993 Nonpathogen - hypothetical protein SSO1136 2 None None None 15896995 Nonpathogen - hypothetical protein SSO0023 2 None None None 15899857 Nonpathogen - Transposase ISC1439 SSO3151 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897666 Common adh-2 Alcohol dehydrogenase (Zn containing) (adh-2) SSO0764 217 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15898123 Common dppF-2 Oligo/dipeptide transport, ATP binding protein . amino-end fragment. (dppF-2) SSO1281 249 COG1123 COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase General function prediction only 15897761 Nonpathogen - hypothetical protein SSO0867 4 None None None 15897959 Common - aconitate hydratase SSO1095 223 COG1048 AcnA, Aconitase A Energy production and conversion 15897872 Common - Nicotinate-nucleotide pyrophosphorylase SSO0996 205 COG0157 NadC, Nicotinate-nucleotide pyrophosphorylase Coenzyme metabolism 15898408 Common - Coenzyme F390 synthetase SSO1594 17 COG1865 COG1865, Uncharacterized conserved protein Function unknown 15897261 Common - hypothetical protein SSO0321 80 COG1351 THY1, Predicted alternative thymidylate synthase Nucleotide transport and metabolism 15897587 Nonpathogen - hypothetical protein SSO0680 1 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15899077 Nonpathogen FlaH flagellar accessory protein FlaH SSO2318 18 COG2874 FlaH, Predicted ATPases involved in biogenesis of archaeal flagella Cell motility and secretion / Intracellular trafficking and secretion 15897542 Common purC phosphoribosylaminoimidazole-succinocarboxamide synthase SSO0626 202 COG0152 PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase Nucleotide transport and metabolism 15897750 Nonpathogen - Transposase ISC1290 SSO0851 2 None None None 15898417 Nonpathogen - hypothetical protein SSO8459 1 None None None 15898208 Common pdhA-1 Pyruvate dehydrogenase, alpha subunit (lipoamide). (pdhA-1) SSO1369 154 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 15897038 Nonpathogen rpoD DNA-directed RNA polymerase, subunit D (rpoD) SSO0071 34 COG0202 RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD subunit Transcription 15898071 Nonpathogen - hypothetical protein SSO1219 14 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15898513 Nonpathogen - hypothetical protein SSO1701 4 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899101 Common gdS-2 Geranylgeranyl pyrophosphate synthetase, putative (gdS-2) SSO2345 224 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 15897333 Nonpathogen - hypothetical protein SSO0399 16 COG2429 COG2429, Uncharacterized conserved protein Function unknown 15898353 Common pdhA-2 Pyruvate dehydrogenase, alpha subunit (lipoamide). (pdhA-2) SSO1525 155 COG1071 AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Energy production and conversion 15898388 Common - hypothetical protein SSO1570 20 COG1917 COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain Function unknown 15898709 Nonpathogen - hypothetical protein SSO1911 3 COG5592 COG5592, Uncharacterized conserved protein Function unknown 15899596 Common - Oxidoreductase SSO2885 204 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15897075 Common ntH-1 DNA endonuclease III, probable (ntH-1) SSO0116 237 COG0177 Nth, Predicted EndoIII-related endonuclease DNA replication, recombination, and repair 15899534 Common fixC FIXC protein homolog (fixC) SSO2819 50 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 15898552 Common - Second ORF in transposon ISC1395 SSO1751 51 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899321 Common tpiA triosephosphate isomerase SSO2592 90 COG0149 TpiA, Triosephosphate isomerase Carbohydrate transport and metabolism 15899057 Common - Exodeoxyribonuclease SSO2290 197 COG0708 XthA, Exonuclease III DNA replication, recombination, and repair 15899232 Nonpathogen - hypothetical protein SSO2491 2 None None None 15897025 Nonpathogen - hypothetical protein SSO0055 20 COG4089 COG4089, Predicted membrane protein Function unknown 15897300 Nonpathogen - hypothetical protein SSO0365 4 COG3888 COG3888, Predicted transcriptional regulator Transcription 15899609 Common - hypothetical protein SSO2897 138 COG1733 COG1733, Predicted transcriptional regulators Transcription 15897441 Nonpathogen - First ORF in transposon ISC1229 SSO0518 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897900 Common - Sulfate ABC transporter, permease protein SSO1032 205 COG0555 CysU, ABC-type sulfate transport system, permease component Posttranslational modification, protein turnover, chaperones 15897994 Nonpathogen - hypothetical protein SSO1137 2 None None None 15898507 Common tynA tyramine oxidase SSO1692 22 COG3733 TynA, Cu2+-containing amine oxidase Secondary metabolites biosynthesis, transport, and catabolism 15898240 Nonpathogen - hypothetical protein SSO1400 2 COG1688 COG1688, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15897941 Common - hypothetical protein SSO1074 35 COG2761 FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis Secondary metabolites biosynthesis, transport, and catabolism 15898841 Nonpathogen - hypothetical protein SSO2049 3 COG5592 COG5592, Uncharacterized conserved protein Function unknown 15899605 Common - Oxidoreductase SSO2892 140 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 161777475 Nonpathogen rps14P 30S ribosomal protein S14P SSO6391 33 COG0199 RpsN, Ribosomal protein S14 Translation, ribosomal structure and biogenesis 15898496 Common - Partial transposase in ISC1316 SSO1682 45 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898768 Common - First ORF in transposon ISC1190 SSO1971 10 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899600 Nonpathogen - First ORF in transposon ISC1225 SSO11389 1 None None None 15899482 Common - hypothetical protein SSO2766 21 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15897865 Common - Alpha amylase SSO0988 23 COG1449 COG1449, Alpha-amylase/alpha-mannosidase Carbohydrate transport and metabolism 15897986 Common - hypothetical protein SSO7239 113 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15897195 Nonpathogen - hypothetical protein SSO0251 2 None None None 15897614 Common rpl14p 50S ribosomal protein L14P SSO0708 248 COG0093 RplN, Ribosomal protein L14 Translation, ribosomal structure and biogenesis 15897275 Nonpathogen - hypothetical protein SSO0340 12 COG2454 COG2454, Uncharacterized conserved protein Function unknown 15897634 Nonpathogen rpl37ae 50S ribosomal protein L37Ae SSO6418 32 COG1997 RPL43A, Ribosomal protein L37AE/L43A Translation, ribosomal structure and biogenesis 15899708 Common - hypothetical protein SSO2998 101 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15897231 Common - putative ATPase RIL SSO0287 249 COG1245 COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog General function prediction only 15897365 Nonpathogen rps24e 30S ribosomal protein S24e SSO0435 17 COG2004 RPS24A, Ribosomal protein S24E Translation, ribosomal structure and biogenesis 15898105 Nonpathogen - hypothetical protein SSO1262 2 None None None 15898793 Nonpathogen - hypothetical protein SSO1998 5 COG1688 COG1688, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898703 Common - Amino acid transporter related protein SSO1906 151 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15897222 Common hisS histidyl-tRNA synthetase SSO0279 249 COG0124 HisS, Histidyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15897106 Common argC N-acetyl-gamma-glutamyl-phosphate reductase SSO0155 196 COG0002 ArgC, Acetylglutamate semialdehyde dehydrogenase Amino acid transport and metabolism 15898751 Common - Dolichyl-phosphate mannose synthase related protein SSO1954 115 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15897010 Common - First ORF in transposon ISC1078 SSO0040 10 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897787 Nonpathogen - hypothetical protein SSO0901 2 None None None 15899437 Common - Second ORF in transposon ISC1229 SSO2722 11 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897940 Common - First ORF in transposon ISC1778 SSO1073 23 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897169 Nonpathogen rpl30E 50S ribosomal protein L30e SSO0221 28 COG1911 RPL30, Ribosomal protein L30E Translation, ribosomal structure and biogenesis 15898848 Common acsA-6 Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-6) SSO2059 220 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15897379 Common hisC-like Histidinol-phosphate aminotransferase, putative (hisC-like) SSO0448 193 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 15899141 Nonpathogen - Transposase ISC1225 SSO3259 5 None None None 15899872 Nonpathogen - hypothetical protein SSO3168 10 None None None 15899910 Common - Oxidoreductase, aldo/keto reductase family SSO3209 206 COG0656 ARA1, Aldo/keto reductases, related to diketogulonate reductase General function prediction only 15898258 Common apeH-1 Acylaminoacyl-peptidase, putative (apeH-1) SSO1419 106 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 15897937 Common - Amino acid transporter SSO1069 133 COG0833 LysP, Amino acid transporters Amino acid transport and metabolism 15897840 Nonpathogen - hypothetical protein SSO0961 6 None None None 15899082 Nonpathogen - hypothetical protein SSO2324 2 None None None 15897847 Common top6B DNA topoisomerase VI subunit B SSO0968 34 COG1389 COG1389, DNA topoisomerase VI, subunit B DNA replication, recombination, and repair 15898213 Nonpathogen - hypothetical protein SSO1374 1 None None None 15898797 Nonpathogen - hypothetical protein SSO2004 2 COG5551 COG5551, Uncharacterized conserved protein Function unknown 15898907 Common - First ORF in transposon ISC1316 SSO2123 65 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897082 Common sun-2 Sun (fmu) protein (sun-2) SSO0122 185 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 15899005 Common - hypothetical protein SSO2230 37 COG1986 COG1986, Uncharacterized conserved protein Function unknown 15899107 Nonpathogen - hypothetical protein SSO2351 2 COG0622 COG0622, Predicted phosphoesterase General function prediction only 15899184 Nonpathogen - hypothetical protein SSO2436 2 None None None 15898779 Nonpathogen - hypothetical protein SSO1984 1 None None None 15898342 Nonpathogen - Transposase ISC1217 SSO1516 1 None None None 15898247 Nonpathogen - Second ORF in transposon ISC1439 SSO1408 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899025 Nonpathogen - hypothetical protein SSO2253 3 COG1592 COG1592, Rubrerythrin Energy production and conversion 15897164 Common tuF-1 elongation factor 1-alpha SSO0216 249 COG5256 TEF1, Translation elongation factor EF-1alpha (GTPase) Translation, ribosomal structure and biogenesis 15897235 Nonpathogen rpoM-like DNA-directed RNA polymerase, putative subunit M (rpoM-like) SSO5576 2 None None None 15897225 Common thsB Thermosome beta subunit(thermophilic factor 55) (ring complex beta subunit)(chaperonin beta subunit) (thsB) SSO0282 246 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 15898184 Common caiB L-carnitine dehydratase, putative (caiB) SSO1343 115 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 15898427 Nonpathogen - hypothetical protein SSO8475 1 None None None 15899348 Common paaF-6 enoyl-CoA hydratase SSO2623 169 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15896987 Common - hypothetical protein SSO0015 45 COG0730 COG0730, Predicted permeases General function prediction only 15897581 Nonpathogen - hypothetical protein SSO0674 20 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 15897780 Common trpE Anthranilate synthase component I (trpE) SSO0893 223 COG0147 TrpE, Anthranilate/para-aminobenzoate synthases component I Amino acid transport and metabolism / Coenzyme metabolism 15897838 Common - DNA repair protein rad25 SSO0959 150 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 15899375 Common pacS Cation transporting ATPase (pacS) SSO2651 232 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 15898631 Common - First ORF in transposon ISC1778 SSO1830 21 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897907 Common - hypothetical protein SSO1040 89 COG1514 LigT, 2'-5' RNA ligase Translation, ribosomal structure and biogenesis 15897596 Nonpathogen - hypothetical protein SSO0691 6 None None None 15897115 Nonpathogen - hypothetical protein SSO0165 5 COG1400 SEC65, Signal recognition particle 19 kDa protein Intracellular trafficking and secretion 15897062 Common pheT phenylalanyl-tRNA synthetase subunit beta SSO0101 183 COG0072 PheT, Phenylalanyl-tRNA synthetase beta subunit Translation, ribosomal structure and biogenesis 15897923 Common - Ammonium transporter SSO1054 203 COG0004 AmtB, Ammonia permease Inorganic ion transport and metabolism 15897676 Common - Minichromosome maintenance protein MCM SSO0774 37 COG1241 MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family DNA replication, recombination, and repair 15897144 Common - hypothetical protein SSO0193 69 COG2078 AMMECR1, Uncharacterized conserved protein Function unknown 15898083 Common tmoE Toluene-4-monooxygenase system protein E. (tmoE) SSO1233 9 None None None 15897102 Nonpathogen - hypothetical protein SSO0150 3 None None None 15899830 Common - Mandelate racemase /muconate lactonizing enzyme related protein (MR/MLE) SSO3124 136 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15899769 Common - Transposase ISC1229 SSO3063 60 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897135 Common - Uroporphyrinogen III synthase, putative SSO0184 21 COG1587 HemD, Uroporphyrinogen-III synthase Coenzyme metabolism 15899764 Common fucA1 Alpha-fucosidase C-terminal fragment (fucA1) SSO3060 32 COG3669 COG3669, Alpha-L-fucosidase Carbohydrate transport and metabolism 15899353 Common - CoA-ligase / coenzyme F390 synthetase, putative SSO2627 115 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 15898646 Nonpathogen - First ORF in transposon ISC1359 SSO1850 2 None None None 15897891 Common hycE Formate hydrogenlyase subunit 5 (hycE) SSO1023 108 COG3261 HycE, Ni,Fe-hydrogenase III large subunit Energy production and conversion 15897258 Common - Sugar phosphate nucleotydyl transferase SSO0317 236 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 15898088 Common - First ORF in partial transposon ISC1491 SSO1240 42 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899396 Common nagA N-acetylglucosamine-6-phosphate deacetylase (nagA) SSO2673 119 COG1820 NagA, N-acetylglucosamine-6-phosphate deacetylase Carbohydrate transport and metabolism 15899581 Common - NAD-dependent malic enzyme (malate oxidoreductase) SSO2869 202 COG0281 SfcA, Malic enzyme Energy production and conversion 15898514 Nonpathogen - Partial transposase ISC1359 SSO1703 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899403 Common gspE-2 Type II secretion system protein, virB homolog (gspE-2) SSO2680 207 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 15897569 Common - hypothetical protein SSO0659 64 COG0864 NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain Transcription 15896972 Common - Glycosyltransferase, putative SSO12256 176 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15899076 Common FlaI Flagella-related protein I, putative (FlaI) SSO2316 228 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 15899826 Common - hypothetical protein SSO3118 122 COG3970 COG3970, Fumarylacetoacetate (FAA) hydrolase family protein General function prediction only 15898561 Nonpathogen - hypothetical protein SSO1763 4 None None None 15897213 Nonpathogen MBP-like Multiprotein Bridging Factor (MBP-like), putative (MBP-like) SSO0270 35 COG1813 COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 Transcription 15897669 Common - hypothetical protein SSO0767 123 COG1881 COG1881, Phospholipid-binding protein General function prediction only 15898100 Common - Microtubule binding protein, putative SSO1256 226 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15899660 Nonpathogen - hypothetical protein SSO2953 4 None None None 15899466 Nonpathogen - hypothetical protein SSO2751 2 None None None 15897095 Common - Primase (Carboxy-end fragment) SSO0140 37 COG3378 COG3378, Predicted ATPase General function prediction only 15899100 Nonpathogen - hypothetical protein SSO2344 2 None None None 15899531 Common - 2-oxoacid--ferredoxin oxidoreductase, alpha chain SSO2815 111 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 15899095 Nonpathogen - hypothetical protein SSO10237 1 COG5397 COG5397, Uncharacterized conserved protein Function unknown 15897120 Common ilvB-1 Acetolactate synthase large subunit homolog (ilvB-1) SSO0170 220 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15898817 Nonpathogen ssh7A 7 KD DNA-binding protein (SSO7D) (SSH7A) (ssh7A /Sso7d-3) SSO9535 2 None None None 15899739 Common - Beta-xylosidase SSO3032 155 COG1472 BglX, Beta-glucosidase-related glycosidases Carbohydrate transport and metabolism 15897043 Nonpathogen - hypothetical protein SSO0077 2 None None None 15899462 Common - hypothetical protein SSO2747 53 COG2017 GalM, Galactose mutarotase and related enzymes Carbohydrate transport and metabolism 15899430 Common - ABC transporter, permease SSO2714 147 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15898237 Nonpathogen - hypothetical protein SSO1397 2 None None None 15898059 Common porA-1 Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-1) SSO1207 127 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 15897857 Common leuA-2 2-isopropylmalate synthase SSO0977 204 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 15897712 Nonpathogen - hypothetical protein SSO0808 3 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15898995 Nonpathogen - hypothetical protein SSO2221 2 None None None 15899812 Nonpathogen - hypothetical protein SSO3104 3 None None None 15899643 Common - Partial transposase ISC1078 SSO2933 7 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897411 Common - ABC transporter SSO0485 52 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 15898173 Nonpathogen - hypothetical protein SSO7710 3 None None None 15897360 Common - Oxidoreductase SSO0430 200 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15899433 Common - Permease SSO2718 139 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15898334 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO1507 1 None None None 15899455 Common - hypothetical protein SSO2740 200 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 15899163 Nonpathogen - hypothetical protein SSO2410 2 None None None 15899274 Nonpathogen - Transposase ISC1439 SSO2540 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899284 Nonpathogen ssh7A 7 KD DNA-binding protein (SSO7D) (SSH7A) (ssh7A /Sso7d-1) SSO10610 2 None None None 15899172 Nonpathogen - hypothetical protein SSO2423 12 COG1524 COG1524, Uncharacterized proteins of the AP superfamily General function prediction only 15897173 Common rpoB2 DNA-directed RNA polymerase subunit beta'' SSO3254 249 COG0085 RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription 15898528 Nonpathogen - Orf in transposon ISC1491 SSO1722 4 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897313 Nonpathogen - hypothetical protein SSO0379 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 15899089 Common - Second ORF in transposon ISC1058 SSO2329 14 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 15897390 Nonpathogen - hypothetical protein SSO0461 31 COG1936 COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) Nucleotide transport and metabolism 15897962 Nonpathogen - hypothetical protein SSO1100 1 None None None 15898147 Nonpathogen - hypothetical protein SSO1306 11 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15897738 Nonpathogen - hypothetical protein SSO0840 2 None None None 15897148 Common - hypothetical protein SSO0198 30 COG2433 COG2433, Uncharacterized conserved protein Function unknown 15898435 Nonpathogen - hypothetical protein SSO1615 2 None None None 15899527 Common - Transposase ISC1316 SSO2811 76 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897563 Common - hypothetical protein SSO0653 96 COG1180 PflA, Pyruvate-formate lyase-activating enzyme Posttranslational modification, protein turnover, chaperones 15898623 Nonpathogen - hypothetical protein SSO1819 1 None None None 15898948 Common - hypothetical protein SSO2167 169 COG0494 MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes DNA replication, recombination, and repair / General function prediction only 15897930 Nonpathogen - hypothetical protein SSO1062 1 None None None 15897490 Nonpathogen rps26E 30S ribosomal protein S26e SSO6179 10 COG4830 RPS26B, Ribosomal protein S26 Translation, ribosomal structure and biogenesis 15898364 Common dapE succinyl-diaminopimelate desuccinylase SSO1538 216 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15897628 Nonpathogen - hypothetical protein SSO0725 6 COG4882 COG4882, Predicted aminopeptidase, Iap family General function prediction only 15897541 Common metS-like Methionyl-tRNA synthetase N-term homolog (metS-like) SSO0627 178 COG0073 ARC1, EMAP domain General function prediction only 15899498 Nonpathogen - hypothetical protein SSO11133 1 None None None 15898354 Common pdhB-2 Pyruvate dehydrogenase, beta subunit (lipoamide). (pdhB-2) SSO1526 203 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 15898373 Nonpathogen - hypothetical protein SSO1553 1 None None None 15898553 Common - hypothetical protein SSO1752 42 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15897372 Nonpathogen - hypothetical protein SSO0442 8 None None None 15898966 Nonpathogen - hypothetical protein SSO2188 7 None None None 15898961 Common idh isocitrate dehydrogenase SSO2182 222 COG0538 Icd, Isocitrate dehydrogenases Energy production and conversion 15897497 Common ilvB-2 acetolactate synthase catalytic subunit SSO0579 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15898539 Nonpathogen - hypothetical protein SSO1736 1 None None None 15898801 Common huyA-2 N-methyl hydantoinase A (huyA-2) SSO2008 115 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15897005 Nonpathogen - hypothetical protein SSO0035 2 None None None 15897604 Common rps5p 30S ribosomal protein S5P SSO0698 249 COG0098 RpsE, Ribosomal protein S5 Translation, ribosomal structure and biogenesis 15898191 Common - hypothetical protein SSO1350 39 COG3342 COG3342, Uncharacterized conserved protein Function unknown 15899508 Nonpathogen - hypothetical protein SSO2790 2 COG5440 COG5440, Uncharacterized conserved protein Function unknown 15899863 Common - hypothetical protein SSO12093 56 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 15899844 Nonpathogen - hypothetical protein SSO3141 2 None None None 15899132 Common acaB-4 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-4) SSO2377 184 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15899476 Common cutA-5 Carbon monoxide dehydrogenase, large chain (cutA-5) SSO2760 111 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15897216 Nonpathogen - hypothetical protein SSO0273 7 COG1938 COG1938, Archaeal enzymes of ATP-grasp superfamily General function prediction only 15897823 Nonpathogen - hypothetical protein SSO0942 23 COG1395 COG1395, Predicted transcriptional regulator Transcription 15898868 Nonpathogen - hypothetical protein SSO2083 1 None None None 15898062 Common cutA-1 Carbon monoxide dehydrogenase, large chain (cutA-1) SSO1209 104 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15899063 Common cbiG-like cobalamin biosynthesis protein CbiG SSO2297 85 COG2073 CbiG, Cobalamin biosynthesis protein CbiG Coenzyme metabolism 15897019 Common - hypothetical protein SSO0049 71 COG1695 COG1695, Predicted transcriptional regulators Transcription 15898037 Common - Inorganic phosphate transporter SSO1183 94 None None None 15898830 Common - Metabolite transport protein SSO2039 142 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15898806 Common - hypothetical protein SSO9500 112 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15897736 Nonpathogen - Polysaccharide biosynthesis related protein SSO0837 3 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 15898718 Common - Second ORF in transposon ISC1395 SSO9241 8 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897821 Nonpathogen - fibrillarin SSO0940 34 COG1889 NOP1, Fibrillarin-like rRNA methylase Translation, ribosomal structure and biogenesis 15897156 Nonpathogen - hypothetical protein SSO0206 11 COG2835 COG2835, Uncharacterized conserved protein Function unknown 15898466 Nonpathogen - Second ORF in transposon ISC1250 SSO1648 2 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898920 Common - ABC transporter, ATP binding protein. SSO2137 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15899134 Nonpathogen eif2B translation initiation factor IF-2 subunit beta SSO2381 34 COG1601 GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain Translation, ribosomal structure and biogenesis 15899445 Common - hypothetical protein SSO2729 23 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 15898078 Common tmoA Toluene-4-monooxygenase system protein A. amino end fragment (tmoA) SSO1227 18 None None None 15898382 Common - Orf in partial transposon ISC1778 SSO1564 19 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897703 Nonpathogen - hypothetical protein SSO0800 1 None None None 15899102 Common rimK-3 Ribosomal protein S6 modification protein (rimK-3) SSO2346 103 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 15898226 Nonpathogen - First ORF in transposon ISC1190 SSO7893 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898049 Nonpathogen - hypothetical protein SSO1196 9 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15898392 Common - hypothetical protein SSO1574 12 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 15897388 Nonpathogen - Transcriptional regulator, putative SSO0458 2 COG3355 COG3355, Predicted transcriptional regulator Transcription 15898362 Nonpathogen - hypothetical protein SSO1536 9 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15897152 Common pyrG CTP synthetase SSO0201 246 COG0504 PyrG, CTP synthase (UTP-ammonia lyase) Nucleotide transport and metabolism 15899772 Common - Arabinose ABC transporter, permease SSO3067 149 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15897318 Common - mRNA 3'-end processing factor, putative SSO0386 177 COG1236 YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing Translation, ribosomal structure and biogenesis 15898463 Common - hypothetical protein SSO1645 15 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 15898616 Nonpathogen - Transposase ISC1234 SSO1814 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15897358 Nonpathogen - hypothetical protein SSO0428 2 None None None 15899594 Nonpathogen - Second ORF in transposon ISC1225 SSO2883 4 None None None 15897203 Nonpathogen - Regulatory protein, AsnC family, putative SSO5522 11 COG1522 Lrp, Transcriptional regulators Transcription 15897752 Nonpathogen - SSV1 integrase fragment homolog (orf D-335) SSO0853 1 None None None 15897683 Nonpathogen - hypothetical protein SSO0781 10 COG1645 COG1645, Uncharacterized Zn-finger containing protein General function prediction only 15899050 Common - NADH oxidase SSO2283 223 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 15899676 Nonpathogen - hypothetical protein SSO2966 2 None None None 15897696 Nonpathogen - hypothetical protein SSO0793 1 None None None 15899221 Common - Sugar phosphate nucleotydyl transferase SSO2479 235 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 15897344 Nonpathogen rps6E 30S ribosomal protein S6 SSO0411 34 COG2125 RPS6A, Ribosomal protein S6E (S10) Translation, ribosomal structure and biogenesis 15898372 Common - hypothetical protein SSO1552 57 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 15897870 Common - hypothetical protein SSO0994 5 COG1695 COG1695, Predicted transcriptional regulators Transcription 15898693 Common - hypothetical protein SSO1898 37 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15898489 Common - hypothetical protein SSO1674 27 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15898810 Common - Ring oxydation complex/ phenylacetic acid degradation related protein SSO2019 37 COG3396 COG3396, Uncharacterized conserved protein Function unknown 15897852 Common - 3-hydroxyisobutyrate dehydrogenase SSO0974 169 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 15898698 Nonpathogen - hypothetical protein SSO1902 1 None None None 15899903 Common - hypothetical protein SSO3201 132 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 15897524 Nonpathogen - hypothetical protein SSO0608 2 None None None 15897035 Common rps9p 30S ribosomal protein S9P SSO0068 50 COG0103 RpsI, Ribosomal protein S9 Translation, ribosomal structure and biogenesis 15897970 Nonpathogen - Transcriptional regulator Lrs14 SSO1108 3 COG3355 COG3355, Predicted transcriptional regulator Transcription 15898587 Nonpathogen - hypothetical protein SSO1788 2 COG1517 COG1517, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15897835 Nonpathogen - hypothetical protein SSO0956 33 COG0731 COG0731, Fe-S oxidoreductases Energy production and conversion 15899536 Common ppsA-2 Phosphoenolpyruvate synthase (ppsA-2) SSO2820 136 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 15899890 Nonpathogen - hypothetical protein SSO3185 2 None None None 15899613 Common - hypothetical protein SSO2899 116 COG2110 COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 General function prediction only 15899074 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO2314 1 None None None 15897814 Common nrd Ribonucleotide reductase (nrd) SSO0929 222 COG0209 NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism 15897812 Common - hypothetical protein SSO0927 183 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 15898492 Nonpathogen - Transposase ISC1439 SSO1678 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897240 Nonpathogen - hypothetical protein SSO0295 2 COG0608 RecJ, Single-stranded DNA-specific exonuclease DNA replication, recombination, and repair 15897971 Nonpathogen - hypothetical protein SSO1109 2 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15898126 Common dppB-2 Oligo/dipeptide transport, permease protein (dppB-2) SSO1284 215 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15899295 Nonpathogen - hypothetical protein SSO2561 2 None None None 15899518 Common adh-12 Alcohol dehydrogenase (Zn containing) (adh-12) SSO2800 215 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 15897710 Nonpathogen - hypothetical protein SSO0806 1 None None None 15899868 Common glcE Glycolate oxidase glcE subunit. (glcE) SSO3165 152 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15899203 Common - hypothetical protein SSO2459 32 COG1415 COG1415, Uncharacterized conserved protein Function unknown 15899217 Nonpathogen - hypothetical protein SSO10449 8 COG3432 COG3432, Predicted transcriptional regulator Transcription 15897964 Nonpathogen - hypothetical protein SSO1102 2 None None None 15899753 Common - ABC transporter, permease SSO3048 217 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898792 Nonpathogen - hypothetical protein SSO1997 13 COG1857 COG1857, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15899320 Nonpathogen - hypothetical protein SSO2591 7 COG2410 COG2410, Uncharacterized conserved protein Function unknown 15899850 Common - Permease SSO3147 132 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 15898169 Common - Restriction endonuclease related protein SSO1328 23 COG1401 McrB, GTPase subunit of restriction endonuclease Defense mechanisms 15898006 Nonpathogen - hypothetical protein SSO1150 2 None None None 15897917 Nonpathogen rpl44e 50S ribosomal protein L44e SSO7111 32 COG1631 RPL42A, Ribosomal protein L44E Translation, ribosomal structure and biogenesis 15897073 Common - hypothetical protein SSO0114 106 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15898548 Nonpathogen - Partial transposase in ISC1234 SSO1747 2 None None None 15897321 Nonpathogen - hypothetical protein SSO0389 1 None None None 15899241 Nonpathogen - hypothetical protein SSO2502 2 None None None 15899299 Nonpathogen - Second ORF in transposon ISC1359 SSO10674 1 None None None 15898115 Common - hypothetical protein SSO1273 17 COG3889 COG3889, Predicted solute binding protein General function prediction only 15899168 Common trxB-3 Thioredoxin reductase (trxB-3) SSO2416 248 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 15899363 Common cutC-2 Carbon monoxide dehydrogenase, small chain. Amino-end fragment (cutC-2) SSO2637 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 15898073 Nonpathogen - hypothetical protein SSO1221 8 COG4689 Adc, Acetoacetate decarboxylase Secondary metabolites biosynthesis, transport, and catabolism 15897979 Nonpathogen - hypothetical protein SSO1119 3 COG2427 COG2427, Uncharacterized conserved protein Function unknown 15899803 Nonpathogen - hypothetical protein SSO3092 1 None None None 15899034 Common - hypothetical protein SSO2265 99 COG1703 ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family Amino acid transport and metabolism 15898379 Common - Oxidoreductase SSO1560 196 COG2084 MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases Lipid metabolism 15899565 Common - ABC transporter, ATP binding protein (glucose) SSO2850 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15898659 Common - hypothetical protein SSO1867 76 COG3189 COG3189, Uncharacterized conserved protein Function unknown 15897803 Nonpathogen - Signal peptidase, putative SSO0916 8 None None None 15899059 Nonpathogen - Amino acid transporter, putative SSO2292 6 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15899154 Common - hypothetical protein SSO2404 12 COG1668 NatB, ABC-type Na+ efflux pump, permease component Energy production and conversion / Inorganic ion transport and metabolism 15898655 Common - Multidrug-efflux transporter SSO1863 20 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899656 Common - First ORF in transposon ISC1048 SSO2949 30 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897729 Common - hypothetical protein SSO0829 21 COG4076 COG4076, Predicted RNA methylase General function prediction only 15899744 Nonpathogen - hypothetical protein SSO3037 4 COG4697 COG4697, Uncharacterized protein conserved in archaea Function unknown 15898484 Common - hypothetical protein SSO1667 31 COG3535 COG3535, Uncharacterized conserved protein Function unknown 15899156 Nonpathogen - hypothetical protein SSO2405 4 None None None 15897352 Common topR-1 reverse gyrase SSO0420 239 COG1110 COG1110, Reverse gyrase DNA replication, recombination, and repair 15899616 Nonpathogen - hypothetical protein SSO2902 2 None None None 15899161 Nonpathogen - hypothetical protein SSO10348 2 None None None 15898025 Common - hypothetical protein SSO1172 35 COG1449 COG1449, Alpha-amylase/alpha-mannosidase Carbohydrate transport and metabolism 15898541 Nonpathogen - hypothetical protein SSO8813 7 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897511 Common hisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA) SSO0594 214 COG0106 HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase Amino acid transport and metabolism 15898501 Common - Partial transposon ISC1190 SSO1684 21 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899574 Common - hypothetical protein SSO2861 44 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 15899305 Nonpathogen - hypothetical protein SSO2573 3 None None None 15899346 Nonpathogen - hypothetical protein SSO2621 3 None None None 15898577 Nonpathogen - Polysaccharide biosynthesis related protein SSO1780 6 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 15897645 Common - Sugar phosphate nucleotydyl transferase SSO0745 242 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 15897905 Nonpathogen - hypothetical protein SSO1038 11 COG2112 COG2112, Predicted Ser/Thr protein kinase Signal transduction mechanisms 15898448 Common gapN-1 Glyceraldehyde-3-phosphate dehydrogenase, NADP dependent (gapN-1) SSO1629 223 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15899620 Common crtZ Beta carotene hydroxylase (crtZ) SSO2906 14 None None None 15898612 Common pepQ-like1 Prolidase (Xaa-Pro dipeptidase) (pepQ-like1) SSO1811 86 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 15899723 Common - hypothetical protein SSO3016 23 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 15899651 Common cutA-6 Carbon monoxide dehydrogenase, large chain (cutA-6) SSO2942 105 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15898393 Common - Oxidoreductase SSO1577 57 COG1144 COG1144, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit Energy production and conversion 15898444 Nonpathogen - Polysaccharide biosynthesis related protein SSO1624 2 COG2244 RfbX, Membrane protein involved in the export of O-antigen and teichoic acid General function prediction only 15897263 Common NuoC NADH dehydrogenase subunit C SSO0323 173 COG0852 NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit Energy production and conversion 15899900 Common - Muconate cycloisomerase related protein SSO3198 110 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15899176 Common - Small heat shock protein hsp20 family SSO2427 86 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 15899932 Common - Cobyric acid synthase SSO3233 152 COG1492 CobQ, Cobyric acid synthase Coenzyme metabolism 15899785 Nonpathogen - hypothetical protein SSO11915 1 None None None 15897036 Common rpl13p 50S ribosomal protein L13P SSO0069 177 COG0102 RplM, Ribosomal protein L13 Translation, ribosomal structure and biogenesis 15898895 Nonpathogen - hypothetical protein SSO2111 3 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897337 Nonpathogen - hypothetical protein SSO0403 8 COG4920 COG4920, Predicted membrane protein Function unknown 15898475 Nonpathogen - hypothetical protein SSO8620 6 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 15899332 Nonpathogen - hypothetical protein SSO2606 1 None None None 15898265 Nonpathogen - hypothetical protein SSO1426 9 COG1337 COG1337, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898672 Nonpathogen - hypothetical protein SSO1878 2 None None None 15897295 Common cysM Cysteine synthase B (cysM) SSO0360 224 COG0031 CysK, Cysteine synthase Amino acid transport and metabolism 15897484 Common atpA V-type ATP synthase subunit A SSO0563 247 COG1155 NtpA, Archaeal/vacuolar-type H+-ATPase subunit A Energy production and conversion 15899288 Common glnA-3 Glutamine synthetase (glutamate ammonia ligase) (GS). (glnA-3) SSO2554 226 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 15899198 Common - hypothetical protein SSO2453 29 COG2453 CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms 15898311 Nonpathogen - Transposase ISC1234 SSO1481 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15898309 Nonpathogen - First ORF in transposon ISC1212 SSO1479 1 None None None 15897326 Common truB tRNA pseudouridine synthase subunit A (truB) SSO5761 37 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 15898733 Nonpathogen - hypothetical protein SSO1932 1 None None None 15897656 Common - Spermidine synthase SSO0757 120 COG0421 SpeE, Spermidine synthase Amino acid transport and metabolism 15898097 Common - hypothetical protein SSO1253 44 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 15897277 Nonpathogen rpl12p 50S ribosomal protein L12P SSO0342 33 COG2058 RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 Translation, ribosomal structure and biogenesis 15897193 Common hit HIT-like protein, hypothetical (hit) SSO0249 124 COG0537 Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only 15898430 Nonpathogen - hypothetical protein SSO1610 1 None None None 15899128 Nonpathogen - hypothetical protein SSO2372 2 None None None 15899887 Common - hypothetical protein SSO3183 70 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 15898167 Nonpathogen - hypothetical protein SSO1325 4 None None None 15897789 Nonpathogen - hypothetical protein SSO6759 6 None None None 15898626 Common - hypothetical protein SSO1824 88 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 15897544 Common purQ Phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) SSO0628 231 COG0047 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain Nucleotide transport and metabolism 15898318 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO1486 1 None None None 15899543 Nonpathogen - hypothetical protein SSO2828 1 None None None 15899239 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase SSO2500 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15899825 Common aldhT Aldehyde dehydrogenase (aldhT) SSO3117 224 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15897774 Common - hypothetical protein SSO0886 54 COG1260 INO1, Myo-inositol-1-phosphate synthase Lipid metabolism 15899327 Common - ABC transporter, ATP binding protein SSO2600 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15897454 Common - hypothetical protein SSO0529 39 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 15899880 Nonpathogen - hypothetical protein SSO3177 3 None None None 15898978 Nonpathogen - hypothetical protein SSO2203 2 None None None 15899631 Nonpathogen - Second ORF in transposon ISC1058 SSO11456 1 None None None 15897864 Common - Glycogen synthase SSO0987 201 COG0297 GlgA, Glycogen synthase Carbohydrate transport and metabolism 15899263 Common - Metabolite transport protein SSO2528 128 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897790 Nonpathogen - hypothetical protein SSO0903 1 None None None 15898260 Nonpathogen - hypothetical protein SSO1421 1 None None None 15897577 Common - Iron-dependent repressor SSO0669 92 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 15899230 Nonpathogen - hypothetical protein SSO2489 2 None None None 15898865 Common - DPSL-type antioxidant enzyme SSO2079 21 COG2406 COG2406, Protein distantly related to bacterial ferritins General function prediction only 15899633 Nonpathogen - hypothetical protein SSO2919 3 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 15899552 Common - ABC transporter, ATP binding protein (branched chain amino acid) SSO2838 249 COG0410 LivF, ABC-type branched-chain amino acid transport systems, ATPase component Amino acid transport and metabolism 15897552 Common argH argininosuccinate lyase SSO0639 232 COG0165 ArgH, Argininosuccinate lyase Amino acid transport and metabolism 15899942 Common aspB-4 Aspartate aminotransferase (aspB-4) SSO3245 206 COG1167 ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Transcription / Amino acid transport and metabolism 15898927 Common - First ORF in transposon ISC1316 SSO2144 8 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897064 Common cinA competence damage-inducible protein A SSO0103 156 COG1058 CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA General function prediction only 15897532 Nonpathogen pyrF Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPdcase) (pyrF) SSO0616 29 COG0284 PyrF, Orotidine-5'-phosphate decarboxylase Nucleotide transport and metabolism 15897951 Nonpathogen - hypothetical protein SSO1086 2 None None None 15899928 Nonpathogen - hypothetical protein SSO3228 3 None None None 15897797 Nonpathogen - hypothetical protein SSO0910 7 COG5491 VPS24, Conserved protein implicated in secretion Cell motility and secretion 15897430 Nonpathogen - hypothetical protein SSO5983 1 None None None 15898973 Nonpathogen - hypothetical protein SSO2197 1 None None None 15898016 Nonpathogen - hypothetical protein SSO1161 4 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15898350 Nonpathogen - hypothetical protein SSO1522 2 None None None 15898788 Nonpathogen - hypothetical protein SSO1993 1 None None None 15897896 Common - hypothetical protein SSO1028 208 COG0084 TatD, Mg-dependent DNase DNA replication, recombination, and repair 15898937 Common - Endonuclease IV related protein SSO2156 33 COG0648 Nfo, Endonuclease IV DNA replication, recombination, and repair 15897406 Common - Histone acethyltransferase, putative SSO0480 84 COG1243 ELP3, Histone acetyltransferase Transcription / Chromatin structure and dynamics 15897008 Common - hypothetical protein SSO0038 18 COG1695 COG1695, Predicted transcriptional regulators Transcription 15898175 Nonpathogen - hypothetical protein SSO1332 1 None None None 15898744 Nonpathogen - Transposase ISC1290 SSO1946 2 None None None 15899228 Common ogt Methylated DNA protein cysteine S-methyltransferase. (DNA 6 O methylguanine)(protein L cysteine S methyltransferase) (ogt) SSO2487 220 COG0350 Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair 15899638 Common - First ORF in transposon ISC1048 SSO2927 30 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899725 Nonpathogen - Transposase ISC1439 SSO3018 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898422 Common - hypothetical protein SSO1606 16 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15898040 Nonpathogen - hypothetical protein SSO1186 1 None None None 15898680 Nonpathogen - Transposase ISC1234 SSO1883 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15899749 Common - ABC transporter, binding protein SSO3043 127 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15899045 Nonpathogen - hypothetical protein SSO2279 3 None None None 15899920 Nonpathogen - First ORF in transposon ISC1316 SSO12210 2 None None None 15899511 Nonpathogen - hypothetical protein SSO2793 3 COG3381 TorD, Uncharacterized component of anaerobic dehydrogenases General function prediction only 15897598 Nonpathogen rpl34e 50S ribosomal protein L34e SSO6374 17 COG2174 RPL34A, Ribosomal protein L34E Translation, ribosomal structure and biogenesis 15897782 Common trpC Indole-3-glycerol phosphate synthase (trpC) SSO0895 219 COG0134 TrpC, Indole-3-glycerol phosphate synthase Amino acid transport and metabolism 15898215 Nonpathogen - hypothetical protein SSO1376 1 COG1178 ThiP, ABC-type Fe3+ transport system, permease component Inorganic ion transport and metabolism 15897078 Nonpathogen - hypothetical protein SSO0118 1 None None None 15898715 Nonpathogen - hypothetical protein SSO1917 2 None None None 15897475 Nonpathogen - hypothetical protein SSO0553 7 COG5399 COG5399, Uncharacterized protein conserved in archaea Function unknown 15898151 Nonpathogen - hypothetical protein SSO1310 2 COG2307 COG2307, Uncharacterized protein conserved in bacteria Function unknown 15897023 Common hypE Hydrogenase expression/formation protein (hypE) SSO0052 115 COG0309 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 15897879 Common - hypothetical protein SSO1004 82 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15897539 Common - hypothetical protein SSO0624 168 COG0602 NrdG, Organic radical activating enzymes Posttranslational modification, protein turnover, chaperones 15897719 Nonpathogen - hypothetical protein SSO0818 8 COG2263 COG2263, Predicted RNA methylase Translation, ribosomal structure and biogenesis 15899685 Nonpathogen - hypothetical protein SSO2976 1 None None None 15897573 Common - SUA5 related conserved hypothetical protein SSO0664 240 COG0009 SUA5, Putative translation factor (SUA5) Translation, ribosomal structure and biogenesis 15898278 Common - ATP-dependent RNA helicase homolog SSO1440 74 COG1203 COG1203, Predicted helicases General function prediction only 15899936 Common - hypothetical protein SSO3238 12 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 15897059 Common - methionine aminopeptidase SSO0098 202 COG0024 Map, Methionine aminopeptidase Translation, ribosomal structure and biogenesis 15898892 Nonpathogen - hypothetical protein SSO2108 1 None None None 15898643 Common - Transposase ISC1316 SSO1844 77 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897183 Common - hypothetical protein SSO0235 99 COG1964 COG1964, Predicted Fe-S oxidoreductases General function prediction only 15897859 Nonpathogen - Transposase ISC1217 SSO0980 1 None None None 15897349 Nonpathogen - hypothetical protein SSO0416 32 COG1909 COG1909, Uncharacterized protein conserved in archaea Function unknown 15897559 Nonpathogen - hypothetical protein SSO0649 9 COG1814 COG1814, Uncharacterized membrane protein Function unknown 15898203 Common - Second ORF in transposon ISC1048 SSO1363 25 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898876 Nonpathogen - hypothetical protein SSO2092 1 None None None 15899115 Common sdhB succinate dehydrogenase iron-sulfur subunit SSO2357 200 COG0479 FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Energy production and conversion 15898934 Nonpathogen - Transposase ISC1217 SSO2153 1 None None None 15898619 Nonpathogen - hypothetical protein SSO8998 3 None None None 15899832 Common - Raffinose synthase (Sip1 seed imbibition) protein homolog SSO3127 5 COG3345 GalA, Alpha-galactosidase Carbohydrate transport and metabolism 15899209 Common accC Biotin carboxylase a subunit of propionyl-CoA carboxylase (accC) SSO2466 233 COG4770 COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit Lipid metabolism 15898000 Common - ABC transporter, ATP binding protein SSO1144 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15899023 Common rad32/mre11 DNA repair protein (rad32/mre11) SSO2250 107 COG0420 SbcD, DNA repair exonuclease DNA replication, recombination, and repair 15899768 Common - hypothetical protein SSO3062 77 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 15897594 Nonpathogen - archaemetzincin-like protein SSO0689 30 COG1913 COG1913, Predicted Zn-dependent proteases General function prediction only 15898602 Nonpathogen - hypothetical protein SSO1802 1 None None None 15897162 Nonpathogen - hypothetical protein SSO0214 7 COG2441 COG2441, Predicted butyrate kinase Energy production and conversion 15898138 Nonpathogen - hypothetical protein SSO1296 1 None None None 15897257 Common sod Superoxide dismutase [Fe] (sod) SSO0316 208 COG0605 SodA, Superoxide dismutase Inorganic ion transport and metabolism 15899491 Common - Electron transfert oxidoreductase SSO2776 144 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 15897429 Common iunH-1 Purine nucleosidase, putative (iunH-1) SSO0505 85 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 15899839 Nonpathogen - Transposase ISC1359 SSO3135 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898107 Common - First ORF in transposon ISC1078 SSO1264 10 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15896989 Common - ATP-dependent helicase SSO0017 174 COG1205 COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster General function prediction only 15897659 Common - Peptidyl-prolyl cis-trans isomerase, FKBP-type rotamase SSO0758 88 COG1047 SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 Posttranslational modification, protein turnover, chaperones 15899355 Nonpathogen - hypothetical protein SSO10788 7 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15898081 Common tmoC Toluene-4-monooxygenase system protein C. (tmoC) SSO1230 19 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 15898121 Common dppF-2 Oligo/dipeptide transport, ATP binding protein . carboxy-end fragment. (dppF-2) SSO1279 187 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 15899798 Nonpathogen - hypothetical protein SSO3087 2 None None None 15899443 Common gabT-1 4-aminobutyrate aminotransferase (gabT-1) SSO2727 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 15898706 Common - Multidrug resistance protein SSO1909 199 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15898509 Common - Transposase in ISC1395 SSO1695 34 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898586 Nonpathogen - hypothetical protein SSO1787 8 COG1517 COG1517, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15897508 Nonpathogen - hypothetical protein SSO0591 2 None None None 15899429 Common - ABC transporter, ATP binding protein SSO2713 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15898145 Common - Mandelate racemase /muconate lactonizing enzyme related protein (MR/MLE) SSO1303 115 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15899065 Common cbiL cobalt-precorrin-2 C(20)-methyltransferase SSO2301 126 COG2243 CobF, Precorrin-2 methylase Coenzyme metabolism 15899182 Common cutB-1 Carbon monoxide dehydrogenase, medium chain. (cutB-1) SSO2434 100 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 15897211 Nonpathogen - hypothetical protein SSO0267 31 COG1303 COG1303, Uncharacterized protein conserved in archaea Function unknown 15899669 Common - NADH dehydrogenase SSO2960 200 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 15899324 Common agxT Serine-pyruvate aminotransferase (agxT) SSO2597 158 COG0075 COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase Amino acid transport and metabolism 15899762 Common - Maltose ABC transporter, permease SSO3058 218 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15897692 Common - hypothetical protein SSO0789 14 None None None 15899945 Common - hypothetical protein SSO3248 10 COG4754 COG4754, Uncharacterized conserved protein Function unknown 15899109 Nonpathogen - hypothetical protein SSO2352 2 None None None 15897992 Common hdrB-2 Heterodisulfide reductase, subunit B (hdrB-2) SSO1135 55 COG2048 HdrB, Heterodisulfide reductase, subunit B Energy production and conversion 15899093 Nonpathogen - hypothetical protein SSO2337 1 None None None 15898906 Common gatA-3 amidase SSO2122 217 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 15898321 Common - Partial transposase from ISC1048 SSO1490 8 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899478 Common etfA Electron transfer flavoprotein, subunit alpha (etfA) SSO2762 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 15898086 Common - First ORF in transposon ISC1491 SSO1237 19 None None None 15899721 Common - Oxidoreductase SSO3014 200 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15897699 Nonpathogen - hypothetical protein SSO0796 2 COG0264 Tsf, Translation elongation factor Ts Translation, ribosomal structure and biogenesis 15899737 Nonpathogen - Second ORF in transposon ISC1212 SSO11766 1 None None None 15897409 Nonpathogen - hypothetical protein SSO0483 2 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 15899894 Common - Amino acid transporter, putative SSO3189 16 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 161777477 Common trpS tryptophanyl-tRNA synthetase SSO0452 107 COG0180 TrpS, Tryptophanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15899567 Common - Permease, putative SSO2853 53 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15898349 Common - hypothetical protein SSO8288 12 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899246 Common acaB-6 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-6) SSO2508 90 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15898833 Common - Allantoin permease SSO2042 60 COG1953 FUI1, Cytosine/uracil/thiamine/allantoin permeases Nucleotide transport and metabolism / Coenzyme metabolism 15899664 Nonpathogen - First ORF in transposon ISC1212 SSO2956 1 None None None 15899349 Common paaF-7 Enoyl CoA hydratase (paaF-7) SSO2624 188 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15898256 Nonpathogen - First ORF in transposon ISC1439 SSO8002 1 None None None 15899496 Nonpathogen - hypothetical protein SSO2781 11 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 15899438 Nonpathogen - First ORF in transposon ISC1229 SSO2723 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899710 Common - Glycosyltransferase, putative SSO3002 32 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15899706 Common - Manganese transporter, putative SSO2995 87 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 15899759 Common - Oxidoreductase SSO3054 205 COG0667 Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Energy production and conversion 15899882 Nonpathogen - hypothetical protein SSO3179 1 None None None 15897104 Common - hypothetical protein SSO0152 20 COG0433 COG0433, Predicted ATPase General function prediction only 15899828 Common - Metabolite transport protein SSO3121 132 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15899426 Common - hypothetical protein SSO2710 117 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 15897309 Common xerC/D XerC/D integrase-recombinase protein (xerC/D) SSO0375 229 COG4974 XerD, Site-specific recombinase XerD DNA replication, recombination, and repair 15897636 Common rph exosome complex exonuclease Rrp41 SSO0735 233 COG0689 Rph, RNase PH Translation, ribosomal structure and biogenesis 15898239 Nonpathogen - hypothetical protein SSO1399 12 COG1857 COG1857, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15897845 Common - hypothetical protein SSO0966 119 COG1690 RtcB, Uncharacterized conserved protein Function unknown 15898297 Nonpathogen - hypothetical protein SSO1464 3 COG1750 COG1750, Archaeal serine proteases General function prediction only 15899607 Common - First ORF in transposon ISC1190 SSO2894 17 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897377 Nonpathogen tfb transcription initiation factor IIB SSO0446 34 COG1405 SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB Transcription 15897672 Common moaC putative molybdenum cofactor biosynthesis protein C SSO0770 196 COG0315 MoaC, Molybdenum cofactor biosynthesis enzyme Coenzyme metabolism 15898739 Nonpathogen - hypothetical protein SSO1939 19 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15897784 Common valS valyl-tRNA synthetase SSO0899 249 COG0525 ValS, Valyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898592 Common - First ORF in transposon ISC1048 SSO1794 31 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899847 Common - Carnitine dehydratase, putative SSO3144 116 COG1804 CaiB, Predicted acyl-CoA transferases/carnitine dehydratase Energy production and conversion 15899870 Nonpathogen - hypothetical protein SSO3166 1 None None None 15897565 Nonpathogen - hypothetical protein SSO0655 2 None None None 15899529 Common - hypothetical protein SSO2813 74 COG1246 ArgA, N-acetylglutamate synthase and related acetyltransferases Amino acid transport and metabolism 15897999 Common - hypothetical protein SSO1143 52 None None None 15898808 Common paaF-4 Enoyl CoA hydratase (paaF-4) SSO2017 185 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15897021 Nonpathogen - hypothetical protein SSO0051 4 COG1682 TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane 15899506 Nonpathogen - hypothetical protein SSO2788 1 None None None 15897749 Common - Transposase ISC1190 SSO0850 93 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898205 Common - First ORF in transposon ISC1316 SSO1366 7 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898711 Common - hypothetical protein SSO1913 93 COG3384 COG3384, Uncharacterized conserved protein Function unknown 15898193 Common - Transcriptional regulator, marR family, putative SSO1352 55 COG1846 MarR, Transcriptional regulators Transcription 15898095 Nonpathogen - hypothetical protein SSO1251 11 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 15898968 Common - hypothetical protein SSO2191 104 COG4783 COG4783, Putative Zn-dependent protease, contains TPR repeats General function prediction only 15898375 Common - Second ORF in transposon ISC1395 SSO1554 27 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898369 Nonpathogen - Partial transposase ISC1439 SSO1546 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899304 Nonpathogen - hypothetical protein SSO2572 2 None None None 15898356 Common pdhC Dihydrolipoamide S-acetyltransferase, amino-end (pdhC) SSO1529 190 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 15897370 Nonpathogen - hypothetical protein SSO0440 6 COG1392 COG1392, Phosphate transport regulator (distant homolog of PhoU) Inorganic ion transport and metabolism 15898245 Common - hypothetical protein SSO1405 104 COG1518 COG1518, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15897727 Nonpathogen - hypothetical protein SSO0827 2 None None None 15899783 Nonpathogen - hypothetical protein SSO3078 8 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897534 Common - hypothetical protein SSO0618 51 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 15897028 Common gdS-1 Geranylgeranyl pyrophosphate synthetase (gdS-1) SSO0061 243 COG0142 IspA, Geranylgeranyl pyrophosphate synthase Coenzyme metabolism 15898039 Nonpathogen - hypothetical protein SSO1185 1 None None None 15897003 Nonpathogen - hypothetical protein SSO0033 2 None None None 15898766 Nonpathogen - hypothetical protein SSO1969 3 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898803 Nonpathogen - hypothetical protein SSO2012 3 None None None 15899412 Common - hypothetical protein SSO2691 35 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 15897606 Nonpathogen rpl19e 50S ribosomal protein L19e SSO0700 34 COG2147 RPL19A, Ribosomal protein L19E Translation, ribosomal structure and biogenesis 15899401 Nonpathogen - hypothetical protein SSO2678 2 None None None 15899713 Common - Alpha-mannosidase SSO3006 52 COG0383 AMS1, Alpha-mannosidase Carbohydrate transport and metabolism 15897621 Nonpathogen rplW 50S ribosomal protein L23 SSO6401 15 COG0089 RplW, Ribosomal protein L23 Translation, ribosomal structure and biogenesis 15897506 Common - hypothetical protein SSO0588 131 COG2096 COG2096, Uncharacterized conserved protein Function unknown 15896974 Common thiD-1 Phosphomethylpyrimidine kinase (thiD-1) SSO0002 222 COG0351 ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Coenzyme metabolism 15897149 Common maT S-adenosylmethionine synthetase SSO0199 43 COG1812 MetK, Archaeal S-adenosylmethionine synthetase Amino acid transport and metabolism 15899778 Common - hypothetical protein SSO3074 47 None None None 15898482 Common codB Cytosine permease (codB) SSO1665 48 COG1457 CodB, Purine-cytosine permease and related proteins Nucleotide transport and metabolism 15897496 Nonpathogen - hypothetical protein SSO0577 3 None None None 15898181 Common acsA-2 Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2) SSO1340 222 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15898829 Nonpathogen - hypothetical protein SSO2038 2 None None None 15898307 Common - Transposase ISC1476 SSO1475 38 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899165 Nonpathogen - hypothetical protein SSO2412 9 COG0720 COG0720, 6-pyruvoyl-tetrahydropterin synthase Coenzyme metabolism 15899367 Nonpathogen - hypothetical protein SSO2641 2 None None None 15897133 Common hemL Glutamate-1-semialdehyde aminotransferase (hemL) SSO0182 237 COG0001 HemL, Glutamate-1-semialdehyde aminotransferase Coenzyme metabolism 15898525 Common - Second ORF in transposon ISC1048 SSO1717 23 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899276 Common - Transposon ISC1190 SSO2542 93 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899453 Common - hypothetical protein SSO2737 167 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15898060 Common porD-1 Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-1) SSO7412 57 COG1144 COG1144, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit Energy production and conversion 15899014 Nonpathogen - First ORF in transposon ISC774 SSO2242 1 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899394 Common - ABC transporter, ATP binding protein SSO2670 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898228 Nonpathogen - First part of one of two inversely orientated ORFs in a partial ISC1043 SSO7898 1 None None None 15898820 Common - 2-haloalkanoic acid dehalogenase SSO2028 44 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15898898 Nonpathogen - hypothetical protein SSO2114 10 COG1846 MarR, Transcriptional regulators Transcription 15898102 Common garD Galactarate dehydratase, putative (garD) SSO1259 73 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 15899474 Common porG-2 Pyruvate synthase gamma chain (Pyruvic-ferredoxin oxidoreductase gamma chain) (porG-2) SSO2758 74 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 15899451 Nonpathogen - hypothetical protein SSO2735 4 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 15896980 Common - X-pro aminopeptidase SSO0010 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 15898819 Common - hypothetical protein SSO2027 41 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15899342 Common dppC-3 Dipeptide ABC transporter permease protein (dppC-3) SSO2617 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15897612 Nonpathogen rps4E 30S ribosomal protein S4e SSO0705 34 COG1471 RPS4A, Ribosomal protein S4E Translation, ribosomal structure and biogenesis 15897093 Nonpathogen - Partial transposase ISC1359 SSO0137 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899602 Nonpathogen - Third ORF in transposon ISC1225 SSO2889 3 None None None 15897186 Nonpathogen purP 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate--formate ligase SSO0239 20 COG1759 COG1759, ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases) General function prediction only 15899468 Nonpathogen - hypothetical protein SSO2753 1 None None None 15898314 Nonpathogen - First part of one of two inversely orientated ORFs in ISC1043 SSO8193 1 None None None 15899538 Nonpathogen - hypothetical protein SSO2822 3 COG2427 COG2427, Uncharacterized conserved protein Function unknown 15897100 Nonpathogen - hypothetical protein SSO0147 2 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15898861 Common - Transport protein, putative SSO2074 80 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899588 Common adh-13 Alcohol dehydrogenase (Zn containing) (adh-13) SSO2878 209 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15898997 Nonpathogen - hypothetical protein SSO2223 35 COG2520 COG2520, Predicted methyltransferase General function prediction only 15899590 Nonpathogen - hypothetical protein SSO2880 1 None None None 15898870 Nonpathogen - Transposase ISC1439 SSO2086 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898332 Common - Transposase ISC1316 SSO1504 77 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899693 Common - hypothetical protein SSO2983 30 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899087 Nonpathogen - hypothetical protein SSO10224 1 None None None 15899297 Nonpathogen - Transposase ISC1217 SSO2566 1 None None None 15898052 Common - Partial transposase ISC1190 SSO1198 13 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15896993 Nonpathogen soxB-like Oxidoreductase, soxB-like, putative (soxB-like) SSO0021 7 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15898563 Nonpathogen - hypothetical protein SSO1765 2 None None None 15899358 Nonpathogen - hypothetical protein SSO2632 5 COG2427 COG2427, Uncharacterized conserved protein Function unknown 15899810 Nonpathogen - Transposase ISC1439 SSO3101 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898117 Common dppC-1 Oligo/dipeptide transport, permease protein (dppC-1) SSO1275 209 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15899373 Common - ABC transporter, ATP binding protein SSO2647 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15899174 Common mcmA1 Methylmalonyl-CoA mutase, alpha-subunit, chain A (mcmA1) SSO2425 109 COG1884 Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit Lipid metabolism 15899480 Nonpathogen - hypothetical protein SSO2764 6 COG0348 NapH, Polyferredoxin Energy production and conversion 15897399 Nonpathogen - hypothetical protein SSO5909 1 COG2034 COG2034, Predicted membrane protein Function unknown 15897826 Nonpathogen TFB-2 Transcription initiation factor IIB (TFIIB) homolog (TFB-2) SSO0946 34 COG1405 SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB Transcription 15897285 Nonpathogen rplX 50S ribosomal protein LX SSO5668 6 COG2157 RPL20A, Ribosomal protein L20A (L18A) Translation, ribosomal structure and biogenesis 15898472 Common - Transposase ISC1173 SSO1654 8 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15898856 Common iorB indolepyruvate oxidoreductase subunit B SSO2069 81 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 15899139 Nonpathogen - hypothetical protein SSO2386 10 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 15897214 Common - proteasome-activating nucleotidase SSO0271 249 COG1222 RPT1, ATP-dependent 26S proteasome regulatory subunit Posttranslational modification, protein turnover, chaperones 15897685 Nonpathogen - SSV1 integrase fragment homolog (orf D-335) SSO0782 5 COG4342 COG4342, Uncharacterized protein conserved in archaea Function unknown 15897012 Nonpathogen - Second ORF in transposon ISC1234 SSO0042 2 COG1023 Gnd, Predicted 6-phosphogluconate dehydrogenase Carbohydrate transport and metabolism 15898580 Common rfbD-2 dTDP-4-dehydrorhamnose reductase (rfbD-2) SSO1783 164 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 15896991 Common moaB Molybdenum cofactor biosynthesis protein B (moaB) SSO0019 183 COG0521 MoaB, Molybdopterin biosynthesis enzymes Coenzyme metabolism 15897583 Common moeA-1 Molybdopterin biosynthesis protein (moeA-1) SSO0676 192 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 15897792 Common serA-1 D-3-phosphoglycerate dehydrogenase (serA-1) SSO0905 231 COG0111 SerA, Phosphoglycerate dehydrogenase and related dehydrogenases Amino acid transport and metabolism 15898769 Common - Second ORF in transposon ISC1190 SSO1972 89 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899796 Common - hypothetical protein SSO11939 15 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15898195 Nonpathogen - Endoglucanase precursor SSO1354 5 None None None 15898329 Nonpathogen - hypothetical protein SSO1500 1 COG4618 ArpD, ABC-type protease/lipase transport system, ATPase and permease components General function prediction only 15898177 Common aceB/mas Malate synthase, putative (aceB/mas) SSO1334 56 COG2225 AceB, Malate synthase Energy production and conversion 15899252 Common - Sugar transport protein SSO2516 165 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15898030 Common aspB-3 Aspartate aminotransferase (aspB-3) SSO1177 245 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 15899036 Nonpathogen - hypothetical protein SSO2268 1 None None None 15898487 Common - Transposase ISC1316 SSO1672 77 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899912 Common gabT-2 4-aminobutyrate aminotransferase SSO3211 237 COG0160 GabT, 4-aminobutyrate aminotransferase and related aminotransferases Amino acid transport and metabolism 15897799 Nonpathogen - hypothetical protein SSO6778 1 None None None 15898368 Common - hypothetical protein SSO1545 17 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15897328 Common - ATP-dependent helicase SSO0394 238 COG1201 Lhr, Lhr-like helicases General function prediction only 15899809 Nonpathogen - hypothetical protein SSO3100 2 None None None 15899879 Common - hypothetical protein SSO3176 88 COG1733 COG1733, Predicted transcriptional regulators Transcription 15897466 Nonpathogen - hypothetical protein SSO0543 1 None None None 15899243 Common - Sugar transport protein SSO2505 172 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897335 Nonpathogen ribC riboflavin synthase SSO0401 22 COG1731 COG1731, Archaeal riboflavin synthase Coenzyme metabolism 15899611 Nonpathogen - Second ORF in transposon ISC774 SSO11417 1 None None None 15899388 Common - Muconate cycloisomerase related protein SSO2665 124 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15897776 Common trpB tryptophan synthase subunit beta SSO0888 224 COG1350 COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) General function prediction only 15897069 Nonpathogen - hypothetical protein SSO0109 9 COG4879 COG4879, Uncharacterized protein conserved in archaea Function unknown 15899940 Nonpathogen - hypothetical protein SSO3242 2 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 15897910 Common - hypothetical protein SSO1043 114 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 15897888 Nonpathogen - hypothetical protein SSO1020 1 None None None 15898410 Common acd-2 Acyl-CoA dehydrogenase (acd-2) SSO1597 209 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15899200 Common entB-like2 Isochorismatase, putative (entB-like2) SSO2455 152 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 15897050 Nonpathogen - hypothetical protein SSO0085 7 COG4353 COG4353, Uncharacterized conserved protein Function unknown 15897168 Common nusA transcription elongation factor NusA SSO0220 34 COG0195 NusA, Transcription elongation factor Transcription 15899687 Common eiF2B translation initiation factor IF-2B subunit alpha SSO2978 131 COG0182 COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family Translation, ribosomal structure and biogenesis 15898390 Nonpathogen - Transposase ISC1439 SSO1572 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899104 Nonpathogen - Geranylgeranyl hydrogenase, putative SSO2348 14 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 15897201 Nonpathogen cdc6-1 Cell division control 6/orc1 protein homolog (cdc6-1) SSO0257 31 COG1474 CDC6, Cdc6-related protein, AAA superfamily ATPase DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones 15899215 Common - Glucan 1,4 alpha glucosidase (Glucoamylase) SSO2473 68 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 15897447 Nonpathogen - SSV1 virus orf B-129 fragment homolog SSO6024 1 None None None 15898401 Nonpathogen - hypothetical protein SSO1587 2 None None None 15897570 Common tldD Zn-dependent protease, tldD protein homolog, putative (tldD) SSO0660 166 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 15897265 Common NuoH NADH dehydrogenase subunit H SSO0325 183 COG1005 NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) Energy production and conversion 15897965 Common - Transport membrane protein (permease) SSO1103 46 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15899158 Common - hypothetical protein SSO2406 46 COG2220 COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold General function prediction only 15899892 Common serA-2 D-3-phosphoglycerate dehydrogenase, putative (serA-2) SSO3187 198 COG1052 LdhA, Lactate dehydrogenase and related dehydrogenases Energy production and conversion / Coenzyme metabolism / General function prediction only 15898384 Common - Heme biosynthesis related protein SSO1566 95 COG0641 AslB, Arylsulfatase regulator (Fe-S oxidoreductase) General function prediction only 15897154 Nonpathogen - hypothetical protein SSO0203 6 None None None 15897734 Nonpathogen - hypothetical protein SSO0834 1 None None None 15899487 Common hpcE-2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2) SSO2773 182 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 15898510 Nonpathogen - First ORF in transposon ISC1491 SSO8725 1 None None None 15897437 Common - Second ORF in transposon ISC1173 SSO0511 13 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15897033 Common rps2P 30S ribosomal protein S2 SSO0067 112 COG0052 RpsB, Ribosomal protein S2 Translation, ribosomal structure and biogenesis 15898503 Nonpathogen - Partial transposase ISC1359 SSO1688 2 None None None 15898922 Common - hypothetical protein SSO2139 14 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15897754 Nonpathogen - hypothetical protein SSO6687 2 None None None 15899592 Nonpathogen - First ORF in transposon ISC1225 SSO11362 1 None None None 15898207 Common - Second ORF in transposon ISC1316 SSO1368 76 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899691 Nonpathogen - hypothetical protein SSO11614 1 None None None 15899080 Nonpathogen - hypothetical protein SSO2322 2 None None None 15897322 Nonpathogen - hypothetical protein SSO0390 2 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15898790 Nonpathogen - First ORF in transposon ISC1225 SSO1995 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897199 Nonpathogen - Nicotinamide mononucleotide adenylyltransferase, putative SSO0255 32 COG1056 NadR, Nicotinamide mononucleotide adenylyltransferase Coenzyme metabolism 60620671 Common srpR signal recognition particle receptor protein SSO0348 247 COG0552 FtsY, Signal recognition particle GTPase Intracellular trafficking and secretion 15897984 Common - hypothetical protein SSO1125 8 COG2044 COG2044, Predicted peroxiredoxins General function prediction only 15899194 Common rbsK-2 Ribokinase (rbsK-2) SSO2449 117 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 15897694 Common - Glycosyltransferase SSO0791 41 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15897440 Nonpathogen - Second ORF in transposon ISC1229 SSO6008 1 None None None 15897990 Nonpathogen - hypothetical protein SSO1133 3 None None None 15899689 Nonpathogen - hypothetical protein SSO2980 3 None None None 15899858 Nonpathogen - hypothetical protein SSO12083 1 None None None 15899770 Common fadD-3 Long-chain-fatty-acid--CoA ligase (fadD-3) SSO3064 225 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15897850 Common srp54 Signal recognition particle protein subunit SRP54 (srp54) SSO0971 247 COG0541 Ffh, Signal recognition particle GTPase Intracellular trafficking and secretion 15898348 Nonpathogen - hypothetical protein SSO1521 5 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898754 Common - Transport membrane protein (permease) SSO1958 19 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897342 Nonpathogen rps15p 30S ribosomal protein S15P SSO0408 34 COG0184 RpsO, Ribosomal protein S15P/S13E Translation, ribosomal structure and biogenesis 161777479 Nonpathogen rps19E 30S ribosomal protein S19e SSO0353 34 COG2238 RPS19A, Ribosomal protein S19E (S16A) Translation, ribosomal structure and biogenesis 15897359 Nonpathogen - hypothetical protein SSO0429 3 COG1527 NtpC, Archaeal/vacuolar-type H+-ATPase subunit C Energy production and conversion 15898935 Common - Tricorn protease interacting factor F2 SSO2154 165 COG0308 PepN, Aminopeptidase N Amino acid transport and metabolism 15897973 Common - hypothetical protein SSO1111 153 COG1832 COG1832, Predicted CoA-binding protein General function prediction only 15898956 Nonpathogen - hypothetical protein SSO2176 1 None None None 15899852 Nonpathogen - Second ORF in partial transposon ISC1160 SSO12067 1 None None None 15897114 Nonpathogen rps8E 30S ribosomal protein S8e SSO0164 34 COG2007 RPS8A, Ribosomal protein S8E Translation, ribosomal structure and biogenesis 15897158 Common dfp DNA/pantothenate metabolism flavoprotein (dfp) SSO0210 234 COG0452 Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase Coenzyme metabolism 15897701 Nonpathogen - hypothetical protein SSO0798 5 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899420 Nonpathogen - hypothetical protein SSO2703 2 None None None 15899678 Nonpathogen soxI-like Quinol oxidase-2, putative subunit (SoxI-like) (soxI-like) SSO2968 2 None None None 15898326 Nonpathogen - hypothetical protein SSO1496 1 None None None 15898499 Nonpathogen - First ORF in transposon ISC1173 SSO8685 1 None None None 15898691 Common - 2-haloalkanoic acid dehalogenase SSO1896 53 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15899629 Nonpathogen - First ORF in transposon ISC1058 SSO2916 3 None None None 15897242 Common thiF Thiamine biosynthesis protein related protein (thiF) SSO0298 221 COG0476 ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Coenzyme metabolism 15897546 Common purF-1 Amidophosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (ATase) (GPAT) (purF-1) SSO0632 240 COG0034 PurF, Glutamine phosphoribosylpyrophosphate amidotransferase Nucleotide transport and metabolism 15898288 Common - hypothetical protein SSO1456 59 COG1112 COG1112, Superfamily I DNA and RNA helicases and helicase subunits DNA replication, recombination, and repair 15897816 Nonpathogen - hypothetical protein SSO0934 2 None None None 15897862 Common - Oxidoreductase, putative SSO0985 64 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15898775 Common - Transposase ISC1332 SSO1980 80 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899196 Common guaA GMP synthase subunit A SSO2451 240 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 15898555 Common - Potassium channel protein, putative SSO1757 84 COG0569 TrkA, K+ transport systems, NAD-binding component Inorganic ion transport and metabolism 15899652 Common - First ORF in transposon ISC1778 SSO2943 23 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15898429 Nonpathogen - SSV1 hypothetical 14.8 kd protein (orf B-129) homolog SSO8481 1 None None None 15899947 Nonpathogen - hypothetical protein SSO3251 17 COG2248 COG2248, Predicted hydrolase (metallo-beta-lactamase superfamily) General function prediction only 15898914 Common porB-like Pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (porB-like) SSO2130 92 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 15897579 Nonpathogen - hypothetical protein SSO0671 2 None None None 15898640 Common pqqE-4 Coenzyme PQQ synthesis protein E (pqqE-4) SSO1839 197 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15899038 Common - Membrane conserved hypothetical protein SSO2272 37 COG0730 COG0730, Predicted permeases General function prediction only 15897660 Common gldA Glycerol-1-phosphate dehydrogenase (gldA) SSO0760 68 COG0371 GldA, Glycerol dehydrogenase and related enzymes Energy production and conversion 161777474 Common - translation-associated GTPase SSO0743 249 COG0012 COG0012, Predicted GTPase, probable translation factor Translation, ribosomal structure and biogenesis 15898915 Common - Transcriptional regulator homolog (Lrp/AsnC family) SSO2131 141 COG1522 Lrp, Transcriptional regulators Transcription 15899648 Common maiA Maleate cis-trans isomerase, probable (maiA) SSO2939 48 COG3473 COG3473, Maleate cis-trans isomerase Secondary metabolites biosynthesis, transport, and catabolism 15899554 Common - ABC transporter, permease (branched chain amino acid) SSO2841 147 COG4177 LivM, ABC-type branched-chain amino acid transport system, permease component Amino acid transport and metabolism 15899325 Common tenA-2 Transcriptional activator (tenA-2) SSO2598 77 COG0819 TenA, Putative transcription activator Transcription 15897456 Common - 3 hydroxy 3 methylglutaryl coenzyme a reductase SSO0531 69 COG1257 HMG1, Hydroxymethylglutaryl-CoA reductase Lipid metabolism 15898904 Nonpathogen - Transposase ISC1439 SSO2120 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898686 Nonpathogen - hypothetical protein SSO1890 5 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 15898633 Nonpathogen - Second ORF in transposon ISC1225 SSO1832 1 None None None 15898018 Nonpathogen - hypothetical protein SSO1163 12 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 15898675 Common doxD-like Terminal quinol oxidase, subunit, putative (doxD-like) SSO1881 6 None None None 15898786 Nonpathogen - hypothetical protein SSO1991 16 COG1353 COG1353, Predicted hydrolase of the HD superfamily (permuted catalytic motifs) General function prediction only 15897076 Nonpathogen - hypothetical protein SSO5209 4 None None None 15897638 Nonpathogen - hypothetical protein SSO0737 34 COG1500 COG1500, Predicted exosome subunit Translation, ribosomal structure and biogenesis 15899658 Nonpathogen - hypothetical protein SSO2950 5 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898186 Nonpathogen - hypothetical protein SSO1345 4 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15899926 Common - hypothetical protein SSO3226 67 COG1830 FbaB, DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes Carbohydrate transport and metabolism 15897953 Common - hypothetical protein SSO1089 25 COG2304 COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 15898352 Common pdhD-2 Dihydrolipoamide dehydrogenase (pdhD-2) SSO1524 243 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15897772 Nonpathogen - hypothetical protein SSO0881 7 COG5491 VPS24, Conserved protein implicated in secretion Cell motility and secretion 15898678 Nonpathogen - Partial ORF from ISC1778 SSO9135 9 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15898042 Common - Phytoene dehydrogenase related protein SSO1188 59 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15898742 Common - Transposase ISC1229 SSO1943 59 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897006 Nonpathogen - hypothetical protein SSO0036 1 None None None 15899338 Common - HtrA like serine protease (periplasmic) SSO2612 222 COG0265 DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain Posttranslational modification, protein turnover, chaperones 15898621 Common - hypothetical protein SSO1818 96 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15897877 Common - Sugar ABC transporter SSO1001 145 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15897084 Nonpathogen - hypothetical protein SSO0124 4 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 15897894 Common hycD Formate hydrogenlyase subunit 4 (hycD) SSO1026 69 COG0650 HyfC, Formate hydrogenlyase subunit 4 Energy production and conversion 15899361 Nonpathogen - hypothetical protein SSO2635 6 COG0709 SelD, Selenophosphate synthase Amino acid transport and metabolism 15897575 Common - Glycerate kinase, putative SSO0666 86 COG2379 GckA, Putative glycerate kinase Carbohydrate transport and metabolism 15898942 Common rfbD-3 dTDP-4-dehydrorhamnose reductase (rfbD-3) SSO2161 60 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 15898732 Nonpathogen - hypothetical protein SSO1931 1 None None None 15898929 Nonpathogen - hypothetical protein SSO2146 1 None None None 15898262 Nonpathogen - hypothetical protein SSO1423 1 COG2512 COG2512, Uncharacterized membrane-associated protein/domain Function unknown 15897557 Common hdb-1 3-hydroxyacyl-CoA dehydrogenase (hdb-1) SSO0647 159 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 15898158 Common - Second ORF in transposon ISC1316 SSO3256 60 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897432 Nonpathogen - hypothetical protein SSO0507 3 None None None 15899330 Common - Small heat shock protein hsp20 family SSO2603 27 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 15898610 Nonpathogen - hypothetical protein SSO1809 1 None None None 15899523 Nonpathogen - hypothetical protein SSO11196 7 COG2329 COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides General function prediction only 15898988 Common - hypothetical protein SSO2213 40 COG2038 CobT, NaMN:DMB phosphoribosyltransferase Coenzyme metabolism 15898357 Common pdhC Dihydrolipoamide S-acetyltransferase, carboxy-end (pdhC) SSO1530 195 COG0508 AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes Energy production and conversion 15897041 Common rps13p 30S ribosomal protein S13P SSO0074 61 COG0099 RpsM, Ribosomal protein S13 Translation, ribosomal structure and biogenesis 15899740 Nonpathogen - Transposase ISC1439 SSO3033 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898156 Common paaX Repressor in ring oxydation complex/ phenylacetic acid degradation pathway related protein (paaX) (paaX) SSO1315 33 COG3327 PaaX, Phenylacetic acid-responsive transcriptional repressor Transcription 15898720 Nonpathogen - hypothetical protein SSO1921 4 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898424 Common - hypothetical protein SSO8469 5 COG5496 COG5496, Predicted thioesterase General function prediction only 15899938 Nonpathogen - hypothetical protein SSO3240 31 COG2016 COG2016, Predicted RNA-binding protein (contains PUA domain) Translation, ribosomal structure and biogenesis 15898267 Nonpathogen - hypothetical protein SSO1428 3 None None None 15898657 Common - hypothetical protein SSO1865 165 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 15899119 Common - hypothetical protein SSO2363 40 COG0714 COG0714, MoxR-like ATPases General function prediction only 15899318 Common - methylcitrate synthase SSO2589 192 COG0372 GltA, Citrate synthase Energy production and conversion 15897280 Common rpl11p 50S ribosomal protein L11P SSO0346 247 COG0080 RplK, Ribosomal protein L11 Translation, ribosomal structure and biogenesis 15899934 Common cbiB Cobalamin biosynthesis protein B (cbiB) SSO3235 147 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15899419 Nonpathogen - hypothetical protein SSO2702 3 None None None 15897253 Nonpathogen - Benzene 1,2-dioxygenase system ferredoxin component, putative SSO0312 7 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 15898887 Nonpathogen - Partial transposase in ISC1225 SSO2103 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899148 Nonpathogen - Iron-sulfur protein, putative SSO2398 6 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 15897631 Common eiF4A RNA helicase (ATP dependent)/eIF4A (eiF4A) SSO0729 35 COG1948 MUS81, ERCC4-type nuclease DNA replication, recombination, and repair 15899572 Nonpathogen - hypothetical protein SSO2858 2 None None None 15899501 Nonpathogen - Second ORF in transposon ISC1225 SSO11138 1 None None None 15897560 Nonpathogen - hypothetical protein SSO0650 2 None None None 15898579 Common - Sugar phosphate nucleotydyl transferase SSO1782 238 COG1209 RfbA, dTDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 15897293 Common - hypothetical protein SSO0358 44 COG2848 COG2848, Uncharacterized conserved protein Function unknown 15899178 Common tuF-2 Elongation factor 1-alpha, putative (tuF-2) SSO2429 168 COG5258 GTPBP1, GTPase General function prediction only 15899223 Common sucD Succinyl-CoA synthetase, alpha subunit (sucD) SSO2482 219 COG0074 SucD, Succinyl-CoA synthetase, alpha subunit Energy production and conversion 15897413 Common - Iron (III) ABC transporter, ATP-binding protein SSO0487 249 COG1120 FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Inorganic ion transport and metabolism / Coenzyme metabolism 15898953 Common - Amidohydrolase, putative SSO2174 194 COG0388 COG0388, Predicted amidohydrolase General function prediction only 15897287 Nonpathogen rpl31E 50S ribosomal protein L31e SSO5671 4 COG2097 RPL31A, Ribosomal protein L31E Translation, ribosomal structure and biogenesis 15897843 Nonpathogen - DNA binding protein SSO10b SSO6877 7 COG1581 Ssh10b, Archaeal DNA-binding protein Transcription 15898727 Common - Transposase ISC1190 SSO1926 100 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898477 Common - First ORF in transposon ISC1778 SSO1658 21 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897674 Nonpathogen - hypothetical protein SSO0773 2 COG1818 COG1818, Predicted RNA-binding protein, contains THUMP domain General function prediction only 15897418 Common thrC-1 threonine synthase SSO0493 130 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 15899311 Common - hypothetical protein SSO2581 9 COG1522 Lrp, Transcriptional regulators Transcription 15898110 Common glmS-2 Glutamine-fructose-6-phosphate transaminase (isomerizing) (glmS-2) SSO1268 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 15897485 Common atpB V-type ATP synthase subunit B SSO0564 247 COG1156 NtpB, Archaeal/vacuolar-type H+-ATPase subunit B Energy production and conversion 15899290 Nonpathogen - hypothetical protein SSO2556 2 None None None 15897654 Nonpathogen - hypothetical protein SSO0754 2 None None None 15898399 Nonpathogen - hypothetical protein SSO1584 2 None None None 15897367 Common - 3-octaprenyl-4-hydroxybenzoate decarboxylase SSO0437 151 COG0163 UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase Coenzyme metabolism 15897688 Nonpathogen - hypothetical protein SSO0785 7 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15899905 Common acsA-10 Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-10) SSO3203 217 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15898570 Common - First ORF in transposon ISC1491 SSO1772 45 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898273 Nonpathogen - Transposase ISC1173 SSO1435 2 None None None 15897048 Nonpathogen pelA Cell division protein pelota homolog (pelA) SSO0083 34 COG1537 PelA, Predicted RNA-binding proteins General function prediction only 15897643 Nonpathogen rpl15E 50S ribosomal protein L15e SSO0742 34 COG1632 RPL15A, Ribosomal protein L15E Translation, ribosomal structure and biogenesis 15898316 Nonpathogen - Third part of one of two inversely orientated ORFs in ISC1043 SSO8195 1 None None None 15897176 Common ndk Nucleoside diphosphate kinase (NDP kinase) (ndk) SSO0230 230 COG0105 Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism 15899541 Common - hypothetical protein SSO2826 121 COG2041 COG2041, Sulfite oxidase and related enzymes General function prediction only 15899819 Nonpathogen - hypothetical protein SSO11979 1 None None None 15897404 Common - hypothetical protein SSO0478 16 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 15897424 Nonpathogen - hypothetical protein SSO0500 1 None None None 15899622 Common cysG Uroporphyrin-III C-methyltransferase (siroheme synthase) (cysG) SSO2908 205 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 15897478 Common pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putataive (pgsA) SSO0556 63 COG0558 PgsA, Phosphatidylglycerophosphate synthase Lipid metabolism 15898323 Nonpathogen - hypothetical protein SSO1493 8 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898165 Common ilvC-2 Ketol-acid reductoisomerase (ilvC-2) SSO1322 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 15898589 Nonpathogen - hypothetical protein SSO1790 1 None None None 15897526 Common pyrD Dihydroorotate dehydrogenase (dihydroorotate oxidase) (DHOdehase) (pyrD) SSO0610 152 COG0167 PyrD, Dihydroorotate dehydrogenase Nucleotide transport and metabolism 15898999 Nonpathogen - hypothetical protein SSO10051 5 COG1534 COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein Translation, ribosomal structure and biogenesis 15899329 Nonpathogen - hypothetical protein SSO2602 5 None None None 15898676 Nonpathogen doxA-like Terminal quinol oxidase, subunit II, putative (doxA-like) SSO1882 1 None None None 15899546 Common - AAA family ATPase SSO2831 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 15898952 Common nadE NH(3+) dependent NAD(+) synthetase (nadE) SSO2172 216 COG0171 NadE, NAD synthase Coenzyme metabolism 15899681 Common soxF Quinol oxidase-2, rieske iron-sulfur protein-2 (soxF) SSO2971 12 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 15898009 Common acd-1 Acyl-CoA dehydrogenase (acd-1) SSO1153 152 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15897939 Common - Second ORF in transposon ISC1778 SSO1072 69 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899557 Nonpathogen - Second ORF in transposon ISC1190 SSO11277 1 None None None 15898416 Nonpathogen - ORF in partial transposon ISC1217 SSO8458 1 None None None 15899896 Nonpathogen - hypothetical protein SSO3192 2 COG0530 ECM27, Ca2+/Na+ antiporter Inorganic ion transport and metabolism 15899817 Nonpathogen - hypothetical protein SSO3110 4 COG4122 COG4122, Predicted O-methyltransferase General function prediction only 15898268 Nonpathogen - hypothetical protein SSO1429 4 COG1353 COG1353, Predicted hydrolase of the HD superfamily (permuted catalytic motifs) General function prediction only 15897415 Common pstS Phosphate binding periplasmic protein precursor (pstS) SSO0489 106 COG0226 PstS, ABC-type phosphate transport system, periplasmic component Inorganic ion transport and metabolism 15899560 Nonpathogen - Transposase ISC1439 SSO2845 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898312 Nonpathogen - First ORF in transposon ISC1225 SSO8189 1 None None None 15899745 Nonpathogen - hypothetical protein SSO3038 2 COG4697 COG4697, Uncharacterized protein conserved in archaea Function unknown 15899122 Common moeA-2 Molybdopterin biosynthesis protein (moeA-2) SSO2365 196 COG0303 MoeA, Molybdopterin biosynthesis enzyme Coenzyme metabolism 15898902 Nonpathogen - hypothetical protein SSO2118 2 None None None 15898724 Common - Transposase ISC1229 SSO1924 14 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899366 Nonpathogen - hypothetical protein SSO2640 2 None None None 15897516 Common hisH imidazole glycerol phosphate synthase subunit HisH SSO0600 214 COG0118 HisH, Glutamine amidotransferase Amino acid transport and metabolism 15898886 Nonpathogen - hypothetical protein SSO2102 1 None None None 15897841 Nonpathogen - chromatin protein SSO0962 28 COG1581 Ssh10b, Archaeal DNA-binding protein Transcription 15898911 Common - Transport protein, permease SSO2127 122 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15899695 Nonpathogen - Transposase ISC1439 SSO2985 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897228 Nonpathogen - hypothetical protein SSO5559 2 COG5131 URM1, Ubiquitin-like protein Posttranslational modification, protein turnover, chaperones 15898013 Common - hypothetical protein SSO1157 51 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15899654 Nonpathogen - hypothetical protein SSO2946 10 COG5493 COG5493, Uncharacterized conserved protein containing a coiled-coil domain Function unknown 15899138 Nonpathogen - GTP binding conserved hypothetical protein SSO2385 38 COG1163 DRG, Predicted GTPase General function prediction only 15897794 Nonpathogen rpoK DNA-directed RNA polymerase subunit K SSO6768 30 COG1758 RpoZ, DNA-directed RNA polymerase, subunit K/omega Transcription 15897402 Common - hypothetical protein SSO0475 24 COG3372 COG3372, Uncharacterized conserved protein Function unknown 15898054 Nonpathogen - Transposase ISC1048 SSO7399 1 None None None 15899579 Nonpathogen - hypothetical protein SSO2867 6 COG3370 COG3370, Uncharacterized protein conserved in archaea Function unknown 15897527 Common pyrC dihydroorotase SSO0611 202 COG0044 PyrC, Dihydroorotase and related cyclic amidohydrolases Nucleotide transport and metabolism 15898098 Common citE Citryl-CoA lyase beta subunit homolog (citE) SSO1254 113 COG2301 CitE, Citrate lyase beta subunit Carbohydrate transport and metabolism 15897493 Common - hypothetical protein SSO0572 61 COG1855 COG1855, ATPase (PilT family) General function prediction only 15899502 Nonpathogen - First ORF in transposon ISC1225 SSO11139 1 None None None 15899716 Common cutA-7 Carbon monoxide dehydrogenase, large chain (cutA-7) SSO3009 117 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15897653 Nonpathogen - hypothetical protein SSO0753 2 None None None 15898438 Common - Glycosyltransferase SSO1618 52 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15898650 Common - hypothetical protein SSO1857 122 COG0518 GuaA, GMP synthase - Glutamine amidotransferase domain Nucleotide transport and metabolism 15899316 Common prpB Carboxyphosphonoenolpyruvate phosphonomutase (CPEP Phosphonomutase), putative (prpB) SSO2587 136 COG2513 PrpB, PEP phosphonomutase and related enzymes Carbohydrate transport and metabolism 15898155 Common acsA-1 Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-1) SSO1314 223 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15899672 Common - hypothetical protein SSO2963 7 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15897187 Nonpathogen purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase SSO0241 20 COG1759 COG1759, ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases) General function prediction only 15897860 Common pyK Pyruvate kinase (pyK) SSO0981 220 COG0469 PykF, Pyruvate kinase Carbohydrate transport and metabolism 15898664 Nonpathogen - Transposase ISC1234 SSO1871 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15898910 Common - L-lactate permease SSO2126 104 COG1620 LldP, L-lactate permease Energy production and conversion 15897087 Common - Iron (III) ABC transporter, periplasmic-binding protein, putative SSO0128 79 COG0614 FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component Inorganic ion transport and metabolism 15899335 Common - Trehalose phosphorylase, putative SSO2609 80 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899019 Common - Methyltransferase, putative SSO2246 26 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15898176 Common aceA/icl isocitrate lyase SSO1333 128 COG2224 AceA, Isocitrate lyase Energy production and conversion 15898010 Common - Monoamine oxidase regulatory protein SSO1154 93 COG2030 MaoC, Acyl dehydratase Lipid metabolism 15898738 Nonpathogen - Transposase ISC1225 SSO1938 5 None None None 15898546 Nonpathogen - First ORF in transposon ISC1058 SSO1745 1 None None None 15897545 Common purL Phosphoribosylformylglycinamidine synthase II (FGAM synthase II) (purL) SSO0629 236 COG0046 PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain Nucleotide transport and metabolism 15899201 Nonpathogen - hypothetical protein SSO2457 12 COG2404 COG2404, Predicted phosphohydrolase (DHH superfamily) General function prediction only 15899635 Nonpathogen - Transposase ISC1439 SSO2922 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898835 Common gdhA-4 NAD specific glutamate dehydrogenase (gdhA-4) SSO2044 181 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 15899237 Common acd-like2 Acyl-CoA dehydrogenase related protein (acd-like2) SSO2497 113 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15897434 Nonpathogen - First ORF in transposon ISC1173 SSO0509 1 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897876 Common - Maltose transport inner membrane protein SSO1000 145 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15897550 Nonpathogen - hypothetical protein SSO0637 3 None None None 15898869 Common - hypothetical protein SSO2085 20 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 15898735 Common - Antibiotic ABC transporter ATP binding protein SSO1934 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15898634 Nonpathogen - First ORF in transposon ISC1225 SSO1833 3 None None None 15899219 Common - Metabolite permease, putative SSO2476 85 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 15899225 Common ntH-2 DNA endonuclease III (ntH-2) SSO2484 168 COG2231 COG2231, Uncharacterized protein related to Endonuclease III DNA replication, recombination, and repair 15898402 Nonpathogen - Transcription regulator SSO1588 1 None None None 15897989 Common hdrA Heterodisulfide reductase, subunit A (hdrA) SSO1131 52 COG1148 HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins Energy production and conversion 15898771 Common - hypothetical protein SSO1975 14 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898924 Common apeH-2 Acylaminoacyl-peptidase, putative (apeH-2) SSO2141 109 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 15899302 Nonpathogen - hypothetical protein SSO2570 3 None None None 15898783 Nonpathogen - hypothetical protein SSO1988 2 None None None 15897663 Nonpathogen - hypothetical protein SSO6469 2 None None None 15899515 Nonpathogen - hypothetical protein SSO2797 7 COG3301 NrfD, Formate-dependent nitrite reductase, membrane component Inorganic ion transport and metabolism 15897998 Common - Transport protein, permease SSO1142 122 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 15898872 Common - Peptidase, putative SSO2088 17 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 15899146 Common moaE Molybdenum cofactor biosynthesis protein E (moaE) SSO2394 93 COG0314 MoaE, Molybdopterin converting factor, large subunit Coenzyme metabolism 15897071 Nonpathogen - hypothetical protein SSO0111 3 COG1310 COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily General function prediction only 15898974 Nonpathogen - hypothetical protein SSO2199 3 None None None 15897687 Nonpathogen - hypothetical protein SSO0784 4 None None None 15897817 Common gatB-2 glutamyl-tRNA(Gln) amidotransferase subunit E SSO0936 186 COG2511 GatE, Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) Translation, ribosomal structure and biogenesis 15897354 Nonpathogen rps25E 30S ribosomal protein S25e SSO0425 8 COG4901 COG4901, Ribosomal protein S25 Translation, ribosomal structure and biogenesis 15897828 Nonpathogen - hypothetical protein SSO0949 29 COG2237 COG2237, Predicted membrane protein Function unknown 15899047 Common cysS cysteinyl-tRNA synthetase SSO2280 242 COG0215 CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898263 Nonpathogen - hypothetical protein SSO1424 2 None None None 15897975 Common - hypothetical protein SSO1114 15 COG1856 COG1856, Uncharacterized homolog of biotin synthetase Function unknown 15897974 Common lplA-like2 Lipoate protein ligase A, hypothetical (lplA-like2) SSO1112 52 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 15898574 Nonpathogen - Transposase ISC1359 SSO1775 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897769 Common thrC-2 Threonine synthase (thrC-2) SSO0878 150 COG0498 ThrC, Threonine synthase Amino acid transport and metabolism 15897762 Common - hypothetical protein SSO0869 26 COG3199 COG3199, Uncharacterized conserved protein Function unknown 15897457 Common - hypothetical protein SSO0532 56 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15899888 Common - hypothetical protein SSO3184 35 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15897198 Common - hypothetical protein SSO0254 74 COG1912 COG1912, Uncharacterized conserved protein Function unknown 15897330 Nonpathogen - hypothetical protein SSO0396 2 None None None 15898668 Nonpathogen - hypothetical protein SSO1875 1 None None None 15897052 Nonpathogen - hypothetical protein SSO0087 33 COG0750 COG0750, Predicted membrane-associated Zn-dependent proteases 1 Cell envelope biogenesis, outer membrane 15897861 Nonpathogen - hypothetical protein SSO0983 2 None None None 15897031 Nonpathogen - hypothetical protein SSO0065 2 None None None 15897131 Common hemA glutamyl-tRNA reductase SSO0180 181 COG0373 HemA, Glutamyl-tRNA reductase Coenzyme metabolism 15898695 Nonpathogen ssh7A 7 KD DNA-binding protein (SSO7D) (SSH7A) (ssh7A /Sso7d-2) SSO9180 2 None None None 15899688 Common - hypothetical protein SSO2979 20 COG0627 COG0627, Predicted esterase General function prediction only 15898597 Nonpathogen - Second ORF in transposon ISC1212 SSO1800 1 None None None 15899344 Common dppA Dipeptide ABC transporter, periplasmic dipeptide binding protein (dppA) SSO2619 45 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15899248 Common alkK-2 Medium-chain-fatty-acid--CoA ligase (alkK-2) SSO2510 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15899820 Common - hypothetical protein SSO3112 19 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15899060 Nonpathogen - hypothetical protein SSO2294 3 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15899757 Common - hypothetical protein SSO3052 16 COG2755 TesA, Lysophospholipase L1 and related esterases Amino acid transport and metabolism 15899626 Common - hypothetical protein SSO2913 2 None None None 15897486 Common atpD V-type ATP synthase subunit D SSO0566 44 COG1394 NtpD, Archaeal/vacuolar-type H+-ATPase subunit D Energy production and conversion 15897766 Common - hypothetical protein SSO0873 40 COG0613 COG0613, Predicted metal-dependent phosphoesterases (PHP family) General function prediction only 15897839 Nonpathogen - hypothetical protein SSO0960 2 None None None 15899261 Common glpA Glycerol-3-phosphate dehydrogenase chain A (glpA) SSO2526 157 COG0578 GlpA, Glycerol-3-phosphate dehydrogenase Energy production and conversion 15897856 Nonpathogen - hypothetical protein SSO6904 2 None None None 15897933 Common purK phosphoribosylaminoimidazole carboxylase ATPase subunit SSO1065 193 COG0026 PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) Nucleotide transport and metabolism 15897707 Nonpathogen - Partial transposase in ISC1225 SSO6566 1 None None None 15897138 Common soxB-like Sarcosine oxidase, subunit beta (soxB-like) SSO0187 110 COG0665 DadA, Glycine/D-amino acid oxidases (deaminating) Amino acid transport and metabolism 15897245 Common tyrA Chorismate mutase/prephenate dehydratase, putative (tyrA) SSO0302 74 COG0287 TyrA, Prephenate dehydrogenase Amino acid transport and metabolism 15897206 Nonpathogen - hypothetical protein SSO0261 3 COG5431 COG5431, Uncharacterized metal-binding protein Function unknown 15898556 Nonpathogen - hypothetical protein SSO1758 1 None None None 15897014 Common doxB Heme bearing subunit I of the terminal oxidase (doxB) SSO0044 175 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 15899533 Common etfAB/fixAB Electron transfer flavoprotein alpha and beta-subunit (etfAB/fixAB) SSO2817 153 COG2025 FixB, Electron transfer flavoprotein, alpha subunit Energy production and conversion 15897805 Common - glycine dehydrogenase subunit 1 SSO0918 172 COG0403 GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain Amino acid transport and metabolism 15899212 Common leuD 3-isopropylmalate dehydratase small subunit SSO2470 152 COG0066 LeuD, 3-isopropylmalate dehydratase small subunit Amino acid transport and metabolism 15899520 Nonpathogen cbsB Cytochrome b558/566, subunit B (cbsB) SSO2802 2 None None None 15898903 Common - hypothetical protein SSO2119 84 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 15897751 Nonpathogen - hypothetical protein SSO0852 1 None None None 15897779 Common trpF Phosphoribosyl anthranilate isomerase (trpF) SSO0892 28 COG0135 TrpF, Phosphoribosylanthranilate isomerase Amino acid transport and metabolism 15898707 Nonpathogen - hypothetical protein SSO1910 1 None None None 15898605 Nonpathogen zfx-2 Ferredoxin (Carboxy-end fragment) (zfx-2) SSO8958 9 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 15899010 Common - Phosphoglycerate mutase, putative SSO2236 100 COG0406 GpmB, Fructose-2,6-bisphosphatase Carbohydrate transport and metabolism 15898111 Nonpathogen - hypothetical protein SSO1269 1 COG2254 COG2254, Predicted HD superfamily hydrolase, possibly a nuclease DNA replication, recombination, and repair 15899381 Nonpathogen soxA Quinol oxidase (SoxABC), subunit II (soxA) SSO2658 2 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 15899291 Nonpathogen - Transposase ISC1234 SSO2557 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15899854 Common - NADH oxidase, putative SSO3148 101 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 15897255 Nonpathogen - hypothetical protein SSO0314 7 COG5494 COG5494, Predicted thioredoxin/glutaredoxin Posttranslational modification, protein turnover, chaperones 15899792 Common - ABC transporter, ATP binding protein, putative SSO3083 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15897980 Nonpathogen - hypothetical protein SSO1118 2 None None None 15898076 Common - hypothetical protein SSO1224 88 COG3193 GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol General function prediction only 15897665 Nonpathogen - hypothetical protein SSO0763 2 None None None 15897262 Nonpathogen NuoA NADH dehydrogenase subunit A SSO0322 8 COG0838 NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) Energy production and conversion 15897588 Common - hypothetical protein SSO0681 57 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15898122 Nonpathogen - Transposase ISC1439 SSO1280 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899309 Nonpathogen - hypothetical protein SSO10704 4 None None None 15899259 Common fadD-2 acyl-CoA synthetase SSO2523 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15897191 Common pheA Probable chorismate mutase (CM)/prephenate dehydratase (PDT) (pheA) SSO0246 212 COG0077 PheA, Prephenate dehydratase Amino acid transport and metabolism 15897927 Nonpathogen - hypothetical protein SSO1059 2 None None None 15899113 Common nagD-like Phosphatase, putative (nagD-like) SSO2355 105 COG0647 NagD, Predicted sugar phosphatases of the HAD superfamily Carbohydrate transport and metabolism 15898468 Nonpathogen - First ORF in transposon ISC1250 SSO1650 1 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898877 Common treZ Malto-oligosyltrehalose trehalohydrolase (treZ) SSO2093 179 COG0296 GlgB, 1,4-alpha-glucan branching enzyme Carbohydrate transport and metabolism 15899268 Nonpathogen celB Cellulase (endo 1,4 beta glucanase), putative (celB) SSO2534 5 None None None 15899322 Nonpathogen - hypothetical protein SSO2594 1 None None None 15897460 Common - S-adenosylmethionine decarboxylase proenzyme SSO0536 67 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 15897315 Common glmS-1 D-fructose-6-phosphate amidotransferase SSO0382 238 COG0449 GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane 15898991 Common acsA-8 Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-8) SSO2216 220 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15898385 Common - hypothetical protein SSO1567 86 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15897693 Common argE-1 Acetylornithine deacetylase fragment (argE-1) SSO0790 77 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15897347 Common rpoE1 DNA-directed RNA polymerase subunit E' SSO0415 45 COG1095 RPB7, DNA-directed RNA polymerase, subunit E' Transcription 15899818 Nonpathogen - hypothetical protein SSO3111 7 COG3371 COG3371, Predicted membrane protein Function unknown 15897642 Nonpathogen - hypothetical protein SSO0741 17 COG1325 COG1325, Predicted exosome subunit Translation, ribosomal structure and biogenesis 15898778 Nonpathogen - hypothetical protein SSO1983 1 None None None 15899030 Common - hypothetical protein SSO2259 7 COG2427 COG2427, Uncharacterized conserved protein Function unknown 15897732 Common rfbD-1 dTDP-4-dehydrorhamnose reductase (rfbD-1) SSO0832 168 COG1091 RfbD, dTDP-4-dehydrorhamnose reductase Cell envelope biogenesis, outer membrane 15897747 Nonpathogen - hypothetical protein SSO0848 1 None None None 15899686 Nonpathogen - hypothetical protein SSO2977 3 COG1300 SpoIIM, Uncharacterized membrane protein Function unknown 15897911 Common - hypothetical protein SSO1044 37 COG1041 COG1041, Predicted DNA modification methylase DNA replication, recombination, and repair 15897111 Common argD Acetylornithine aminotransferase (argD) SSO0160 237 COG4992 ArgD, Ornithine/acetylornithine aminotransferase Amino acid transport and metabolism 15897039 Common rps11p 30S ribosomal protein S11P SSO0072 248 COG0100 RpsK, Ribosomal protein S11 Translation, ribosomal structure and biogenesis 15899915 Common - hypothetical protein SSO3214 48 COG1444 COG1444, Predicted P-loop ATPase fused to an acetyltransferase General function prediction only 15899255 Common - Cyclase/dehydrase, putative SSO2519 89 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15897324 Common - hypothetical protein SSO0392 73 COG2813 RsmC, 16S RNA G1207 methylase RsmC Translation, ribosomal structure and biogenesis 15898129 Nonpathogen - Partial transposase ISC1250 SSO1286 1 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898133 Nonpathogen - hypothetical protein SSO1290 2 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15897066 Nonpathogen - hypothetical protein SSO0106 3 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 15898750 Nonpathogen - hypothetical protein SSO1953 3 None None None 15897773 Common ppsA-1 phosphoenolpyruvate synthase SSO0883 236 COG0574 PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase Carbohydrate transport and metabolism 15897648 Common - hypothetical protein SSO0748 28 COG2890 HemK, Methylase of polypeptide chain release factors Translation, ribosomal structure and biogenesis 15899281 Nonpathogen - hypothetical protein SSO2547 1 None None None 15896976 Common - hypothetical protein SSO0006 49 COG1234 ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III General function prediction only 15897619 Common rps19p 30S ribosomal protein S19P SSO0715 241 COG0185 RpsS, Ribosomal protein S19 Translation, ribosomal structure and biogenesis 15897633 Nonpathogen - hypothetical protein SSO0731 8 COG2136 IMP4, Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain Translation, ribosomal structure and biogenesis / RNA processing and modification 15897931 Nonpathogen - hypothetical protein SSO1063 6 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15897311 Common - hypothetical protein SSO0377 131 COG2096 COG2096, Uncharacterized conserved protein Function unknown 15899085 Nonpathogen - hypothetical protein SSO2327 2 COG4742 COG4742, Predicted transcriptional regulator Transcription 15899434 Common amaB allantoate amidohydrolase SSO2719 86 COG0624 ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Amino acid transport and metabolism 15899192 Nonpathogen - hypothetical protein SSO2445 2 None None None 15897363 Common - O-sialoglycoprotein endopeptidase SSO0434 248 COG0533 QRI7, Metal-dependent proteases with possible chaperone activity Posttranslational modification, protein turnover, chaperones 15898380 Common - hypothetical protein SSO1562 14 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15899485 Common codA Cytosine deaminase (codA) SSO2770 87 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15898758 Common - hypothetical protein SSO1962 16 COG3885 COG3885, Uncharacterized conserved protein Function unknown 15897282 Nonpathogen secE preprotein translocase subunit SecE SSO5663 1 COG2443 Sss1, Preprotein translocase subunit Sss1 Intracellular trafficking and secretion 15899270 Common adh-10 Alcohol dehydrogenase (Zn containing) (adh-10) SSO2536 205 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15898022 Common - Sugar ABC transporter SSO1169 143 COG3833 MalG, ABC-type maltose transport systems, permease component Carbohydrate transport and metabolism 15899372 Common - hypothetical protein SSO2646 18 COG0842 COG0842, ABC-type multidrug transport system, permease component Defense mechanisms 15898387 Nonpathogen - hypothetical protein SSO1569 1 None None None 15899357 Nonpathogen - hypothetical protein SSO2631 8 COG2210 COG2210, Uncharacterized conserved protein Function unknown 15898238 Nonpathogen - hypothetical protein SSO1398 1 None None None 15897267 Nonpathogen NuoJ NADH dehydrogenase subunit J (NuoJ) SSO0327 4 COG0839 NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J) Energy production and conversion 15898221 Nonpathogen - Transposase ISC1217 SSO1382 1 None None None 15899668 Nonpathogen - hypothetical protein SSO2959 1 None None None 15898050 Nonpathogen - First ORF in transposon ISC1217 SSO1197 1 None None None 15898565 Nonpathogen - Second ORF in transposon ISC1212 SSO1766 1 None None None 15899417 Nonpathogen - hypothetical protein SSO2700 4 COG5424 COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C Coenzyme metabolism 15899789 Nonpathogen - hypothetical protein SSO3080 12 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15899317 Common - hypothetical protein SSO2588 171 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 15897397 Common - hypothetical protein SSO0469 20 COG0433 COG0433, Predicted ATPase General function prediction only 15898231 Nonpathogen - hypothetical protein SSO1389 11 COG1517 COG1517, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15897209 Common - DNA modification methylase, type II R/M system SSO0265 111 COG0270 Dcm, Site-specific DNA methylase DNA replication, recombination, and repair 15897640 Nonpathogen - hypothetical protein SSO0739 9 COG1369 POP5, RNase P/RNase MRP subunit POP5 Translation, ribosomal structure and biogenesis 15898366 Common - hypothetical protein SSO1540 51 COG3191 DmpA, L-aminopeptidase/D-esterase Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15898397 Common - hypothetical protein SSO1581 11 COG0348 NapH, Polyferredoxin Energy production and conversion 15897967 Common - Glycine cleavage system protein H, hypothetical SSO1105 168 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 15897982 Nonpathogen - hypothetical protein SSO1121 2 None None None 15898452 Nonpathogen - hypothetical protein SSO8549 2 None None None 15897407 Common - hypothetical protein SSO0481 195 COG0637 COG0637, Predicted phosphatase/phosphohexomutase General function prediction only 15898093 Nonpathogen - Transposase ISC1359 SSO1245 2 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898292 Nonpathogen dpo2 DNA polymerase II (DNA polymerase B2) amino-end (dpo2) SSO8124 1 None None None 15898840 Nonpathogen - hypothetical protein SSO2050 1 None None None 15899016 Common iunH-2 Purine nucleosidase, putative (iunH-2) SSO2243 84 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 15899151 Common panB 3-methyl-2-oxobutanoate hydroxymethyltransferase SSO2400 195 COG0413 PanB, Ketopantoate hydroxymethyltransferase Coenzyme metabolism 15897617 Common rps3p 30S ribosomal protein S3P SSO0712 249 COG0092 RpsC, Ribosomal protein S3 Translation, ribosomal structure and biogenesis 15897758 Nonpathogen - hypothetical protein SSO0863 2 None None None 15896998 Common purT phosphoribosylglycinamide formyltransferase 2 SSO0026 227 COG0027 PurT, Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) Nucleotide transport and metabolism 15897393 Nonpathogen - hypothetical protein SSO0465 2 COG1421 COG1421, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15899829 Nonpathogen - hypothetical protein SSO3123 1 None None None 15898281 Nonpathogen - hypothetical protein SSO1443 2 None None None 15899599 Nonpathogen - hypothetical protein SSO2887 1 None None None 15897658 Nonpathogen snRNP-2 Small nuclear riboprotein protein (snRNP-2) SSO6454 27 COG1958 LSM1, Small nuclear ribonucleoprotein (snRNP) homolog Transcription 15897126 Nonpathogen - peptidyl-tRNA hydrolase SSO0175 34 COG1990 COG1990, Uncharacterized conserved protein Function unknown 15897548 Common purD phosphoribosylamine--glycine ligase SSO0635 231 COG0151 PurD, Phosphoribosylamine-glycine ligase Nucleotide transport and metabolism 15897722 Common - hypothetical protein SSO0821 18 COG4076 COG4076, Predicted RNA methylase General function prediction only 15899458 Nonpathogen - hypothetical protein SSO2743 32 COG1602 COG1602, Uncharacterized conserved protein Function unknown 15898516 Common - First ORF in transposon ISC1048 SSO1705 31 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898705 Nonpathogen - hypothetical protein SSO1908 1 None None None 15897054 Common rpl7ae 50S ribosomal protein L7Ae SSO0091 45 COG1358 RPL8A, Ribosomal protein HS6-type (S12/L30/L7a) Translation, ribosomal structure and biogenesis 15898287 Nonpathogen - hypothetical protein SSO1451 9 COG4343 COG4343, Uncharacterized protein conserved in archaea Function unknown 15897743 Nonpathogen - hypothetical protein SSO6663 1 COG1487 VapC, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897373 Common glyS glycyl-tRNA synthetase SSO0444 91 COG0423 GRS1, Glycyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 15897622 Nonpathogen rpl4lp 50S ribosomal protein L4P SSO0718 34 COG0088 RplD, Ribosomal protein L4 Translation, ribosomal structure and biogenesis 15897987 Nonpathogen hdrC-1 Heterodisulfide reductase, subunit C (hdrC-1) SSO1127 29 COG1150 HdrC, Heterodisulfide reductase, subunit C Energy production and conversion 15897427 Nonpathogen - hypothetical protein SSO0503 4 COG1269 NtpI, Archaeal/vacuolar-type H+-ATPase subunit I Energy production and conversion 15899144 Common - hypothetical protein SSO2391 30 COG1896 COG1896, Predicted hydrolases of HD superfamily General function prediction only 15898805 Nonpathogen - hypothetical protein SSO2014 4 None None None 15897001 Common - hypothetical protein SSO0031 171 COG0388 COG0388, Predicted amidohydrolase General function prediction only 15898066 Common - Carbonic anhydrase SSO1214 41 COG0288 CynT, Carbonic anhydrase Inorganic ion transport and metabolism 15899099 Common mtaP 5'-methylthioadenosine phosphorylase II SSO2343 154 COG0005 Pnp, Purine nucleoside phosphorylase Nucleotide transport and metabolism 15899308 Common - Partial transposase ISC1058 SSO2577 10 COG3214 COG3214, Uncharacterized protein conserved in bacteria Function unknown 15898118 Common dppD-1 Oligo/dipeptide transport, ATP binding protein (dppD-1) SSO1276 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15897027 Common gnptA UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (gnptA) SSO0060 50 COG0472 Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase Cell envelope biogenesis, outer membrane 15898843 Common hpaA 4-hydroxyphenylacetate-3-hydroxylase (hpaA) SSO2053 50 COG2368 COG2368, Aromatic ring hydroxylase Secondary metabolites biosynthesis, transport, and catabolism 15897177 Nonpathogen rpl24E 50S ribosomal protein L24e SSO5478 32 COG2075 RPL24A, Ribosomal protein L24E Translation, ribosomal structure and biogenesis 15899800 Common - hypothetical protein SSO3089 8 COG3391 COG3391, Uncharacterized conserved protein Function unknown 15898339 Nonpathogen - hypothetical protein SSO1513 4 None None None 15897518 Common - hypothetical protein SSO0601 147 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 15899470 Common - Glycosyltransferase, putative SSO2755 196 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15897624 Nonpathogen - hypothetical protein SSO0720 9 COG2106 COG2106, Uncharacterized conserved protein Function unknown 15898460 Nonpathogen - hypothetical protein SSO1641 6 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15898033 Nonpathogen - Second ORF in transposon ISC1439 SSO1180 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899407 Nonpathogen - hypothetical protein SSO2686 2 COG4640 COG4640, Predicted membrane protein Function unknown 15899877 Common - hypothetical protein SSO3174 230 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 15896978 Common - Transposase, probably IS605-TnpB family SSO0008 31 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897503 Common - S-adenosylmethionine decarboxylase proenzyme SSO0585 66 COG1586 SpeD, S-adenosylmethionine decarboxylase Amino acid transport and metabolism 15897345 Common eif2G translation initiation factor IF-2 subunit gamma SSO0412 249 COG5257 GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) Translation, ribosomal structure and biogenesis 15897289 Nonpathogen pdcd5 hypothetical protein SSO0352 33 COG2118 COG2118, DNA-binding protein General function prediction only 15897488 Nonpathogen atpK V-type ATP synthase subunit K SSO0567 2 None None None 15897159 Common - Acetyltransferase, putative SSO0209 131 COG0456 RimI, Acetyltransferases General function prediction only 15899782 Nonpathogen - hypothetical protein SSO11909 1 None None None 15898756 Nonpathogen - hypothetical protein SSO1960 9 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 15898358 Common - Alkyldihydroxyacetonephosphate synthase SSO1531 178 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15899525 Common alkK-3 Medium-chain-fatty-acid--CoA ligase (alkK-3) SSO2808 224 COG0318 CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15898881 Common tri Tricorn protease (tri) SSO2098 28 COG4946 COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system Function unknown 15898291 Common dpo2 DNA polymerase II (DNA polymerase B2) carboxy-end (dpo2) SSO1459 48 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 15899736 Nonpathogen - Third ORF in transposon ISC1212 SSO3030 1 None None None 15898714 Nonpathogen - Second ORF in transposon ISC1913 SSO1916 13 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897671 Common rfcL replication factor C large subunit SSO0769 192 COG0470 HolB, ATPase involved in DNA replication DNA replication, recombination, and repair 15899266 Nonpathogen - hypothetical protein SSO2531 2 COG0622 COG0622, Predicted phosphoesterase General function prediction only 15898533 Nonpathogen - hypothetical protein SSO1729 12 COG1353 COG1353, Predicted hydrolase of the HD superfamily (permuted catalytic motifs) General function prediction only 15899117 Nonpathogen sdhD Succinate dehydrogenase subunit D (sdhD) SSO2359 3 None None None 15897785 Common - hypothetical protein SSO0898 26 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 15899067 Common cbiD cobalt-precorrin-6A synthase SSO2305 95 COG1903 CbiD, Cobalamin biosynthesis protein CbiD Coenzyme metabolism 15899489 Common - Glycosyltransferase, putative SSO2775 219 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15897715 Common - UTP-glucose-1-phosphate uridylyltransferase SSO0813 230 COG1210 GalU, UDP-glucose pyrophosphorylase Cell envelope biogenesis, outer membrane 15898606 Nonpathogen - hypothetical protein SSO1805 4 None None None 15899775 Common - hypothetical protein SSO3071 80 COG1878 COG1878, Predicted metal-dependent hydrolase General function prediction only 15899711 Common dhg-1 Glucose 1-dehydrogenase (dhg-1) SSO3003 155 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 15899645 Common hyuA-3 N-methylhydantoinase A (hyuA-3) SSO2936 115 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15899392 Common - ABC transporter, periplasmic component SSO2669 57 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15898197 Nonpathogen - hypothetical protein SSO1356 2 None None None 15898498 Common - Third ORF in transposon ISC1173 SSO8684 6 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898685 Common - ATP-dependent RNA helicase SSO1889 235 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 15898302 Nonpathogen - hypothetical protein SSO1470 6 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15899679 Common soxH Quinol oxidase-2, subunit II (soxH) SSO2969 154 COG1622 CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 Energy production and conversion 15897227 Nonpathogen - hypothetical protein SSO0284 2 None None None 15899917 Nonpathogen - hypothetical protein SSO3215 2 None None None 15898544 Common doxD Terminal quinol oxidase, subunit (doxD) SSO1742 4 COG2259 COG2259, Predicted membrane protein Function unknown 15899907 Common - hypothetical protein SSO3205 120 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 15898187 Nonpathogen - hypothetical protein SSO1346 2 None None None 15897249 Common aroC chorismate synthase SSO0307 227 COG0082 AroC, Chorismate synthase Amino acid transport and metabolism 15897601 Common secY preprotein translocase subunit SecY SSO0695 65 COG0201 SecY, Preprotein translocase subunit SecY Intracellular trafficking and secretion 15898852 Common - hypothetical protein SSO2063 14 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15898087 Common - Transposase in transposon ISC1048 SSO1238 54 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897874 Common nadA quinolinate synthetase SSO0998 196 COG0379 NadA, Quinolinate synthase Coenzyme metabolism 15897709 Nonpathogen - hypothetical protein SSO0805 1 None None None 15898859 Common - hypothetical protein SSO2072 212 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15897608 Common rpl6p 50S ribosomal protein L6P SSO0702 44 COG0097 RplF, Ribosomal protein L6P/L9E Translation, ribosomal structure and biogenesis 15897446 Nonpathogen - hypothetical protein SSO0523 2 None None None 15898275 Nonpathogen - hypothetical protein SSO1437 2 COG5551 COG5551, Uncharacterized conserved protein Function unknown 15898255 Nonpathogen - Second ORF in transposon ISC1439 SSO1417 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898182 Common - Transposase ISC1316 SSO1341 76 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899352 Common - CoA-ligase / coenzyme F390 synthetase, putative SSO10784 85 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 15898478 Common - Second ORF in transposon ISC1778 SSO1659 67 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899867 Common glcD Glycolate oxidase glcD subunit. (glcD) SSO3163 201 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15898815 Nonpathogen - hypothetical protein SSO2024 2 None None None 15898045 Common - Thymidylate kinase related protein SSO1191 52 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 15899495 Nonpathogen - hypothetical protein SSO2780 6 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15897568 Common - hypothetical protein SSO0658 34 COG3382 COG3382, Uncharacterized conserved protein Function unknown 15898963 Nonpathogen cdc6-3 Cell division control 6/orc1 protein homolog (cdc6-3) SSO2184 31 COG1474 CDC6, Cdc6-related protein, AAA superfamily ATPase DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones 15898002 Common - hypothetical protein SSO1146 67 None None None 15898985 Nonpathogen - hypothetical protein SSO2210 2 None None None 15899697 Nonpathogen - hypothetical protein SSO2987 2 None None None 15899111 Nonpathogen - hypothetical protein SSO2354 10 COG3356 COG3356, Predicted membrane protein Function unknown 15897375 Nonpathogen rpoP DNA-directed RNA polymerase subunit P SSO5865 5 COG1996 RPC10, DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) Transcription 15899092 Common adh-6 Alcohol dehydrogenase (Zn containing) (adh-6) SSO2334 217 COG0604 Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases Energy production and conversion / General function prediction only 15897218 Common tgtA Queuine/archaeosine-tRNA -ribosyltransferase (tgtA) SSO0274 196 COG0343 Tgt, Queuine/archaeosine tRNA-ribosyltransferase Translation, ribosomal structure and biogenesis 15897410 Common tatC tatC protein (tatC) SSO0484 172 COG0805 TatC, Sec-independent protein secretion pathway component TatC Intracellular trafficking and secretion 15897943 Nonpathogen - hypothetical protein SSO1076 2 None None None 15899835 Common - Transporter SSO3129 216 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899071 Common - hypothetical protein SSO2310 28 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15899410 Common merA Mercuric reductase (Hg(II) reductase) (merA) SSO2689 248 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15898534 Nonpathogen - hypothetical protein SSO1730 3 None None None 15898748 Common - Transposase ISC1190 SSO1951 99 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899399 Nonpathogen - hypothetical protein SSO2677 4 None None None 15899720 Common - Dehydrogenase, putative SSO3013 171 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15898582 Nonpathogen - hypothetical protein SSO8906 1 None None None 15898568 Nonpathogen - hypothetical protein SSO1768 1 None None None 15899943 Nonpathogen - hypothetical protein SSO3246 2 None None None 15898572 Nonpathogen - hypothetical protein SSO1774 1 COG4278 COG4278, Uncharacterized conserved protein Function unknown 15898526 Common - First ORF in transposon ISC1048 SSO1719 30 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898109 Common - ABC transporter, ATP binding protein SSO1266 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15898932 Common - hypothetical protein SSO2151 41 COG0607 PspE, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 15898137 Common - hypothetical protein SSO1294 3 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15898825 Common - Transposase ISC1058 SSO2033 19 None None None 15899007 Common trxA-2 Thioredoxin (trxA-2) SSO2232 234 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 15898521 Nonpathogen - hypothetical protein SSO1711 2 COG1517 COG1517, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15896983 Common - hypothetical protein SSO0012 123 COG2860 COG2860, Predicted membrane protein Function unknown 15899794 Nonpathogen - hypothetical protein SSO11934 2 None None None 15898233 Nonpathogen - hypothetical protein SSO1392 5 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 15899245 Nonpathogen - hypothetical protein SSO2507 7 COG3255 COG3255, Putative sterol carrier protein Lipid metabolism 15897533 Nonpathogen - hypothetical protein SSO0617 4 None None None 15899279 Nonpathogen - hypothetical protein SSO2545 1 None None None 15897957 Nonpathogen - hypothetical protein SSO1092 2 None None None 15899189 Common adh-7 Alcohol dehydrogenase (Zn containing) (adh-7) SSO2441 210 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15899898 Common - Fructokinase SSO3195 166 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 15897495 Common ilvC-1 ketol-acid reductoisomerase SSO0576 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 15897562 Nonpathogen - hypothetical protein SSO0652 4 COG1547 COG1547, Uncharacterized conserved protein Function unknown 15897190 Common nirD Heme biosynthesis nirD related protein (nirD) SSO0245 51 COG1522 Lrp, Transcriptional regulators Transcription 15899846 Common - Permease, putative SSO3143 151 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15898216 Nonpathogen - Transposase ISC1234 SSO1377 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15897591 Common - hypothetical protein SSO0686 166 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 15898763 Common - Third ORF in transposon ISC1913 SSO1967 16 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897251 Common aroA 3-phosphoshikimate 1-carboxyvinyltransferase SSO0309 229 COG0128 AroA, 5-enolpyruvylshikimate-3-phosphate synthase Amino acid transport and metabolism 15897903 Nonpathogen - hypothetical protein SSO1035 1 None None None 15898142 Common adh-4 Alcohol dehydrogenase (Zn containing) (adh-4) SSO1300 207 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15899569 Nonpathogen - First ORF in transposon ISC1439 SSO2855 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898480 Common huyA-1 N-methylhydantoinase A (huyA-1) SSO1663 118 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15899747 Common - hypothetical protein SSO3041 74 COG3386 COG3386, Gluconolactonase Carbohydrate transport and metabolism 15897166 Nonpathogen - hypothetical protein SSO0218 6 COG1259 COG1259, Uncharacterized conserved protein Function unknown 15899807 Nonpathogen - hypothetical protein SSO3098 4 None None None 15899181 Common cutC-1 Carbon monoxide dehydrogenase, small chain (cutC-1) SSO2433 122 COG2080 CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs Energy production and conversion 15899440 Nonpathogen - Transposase ISC1225 SSO2724 5 None None None 15898913 Common porA-like Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-like) SSO2129 116 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 15899766 Nonpathogen - hypothetical protein SSO3061 4 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15897800 Common - Enolase SSO0913 246 COG0148 Eno, Enolase Carbohydrate transport and metabolism 15898153 Common - Ring oxydation complex/ phenylacetic acid degradation related protein SSO1312 51 COG3396 COG3396, Uncharacterized conserved protein Function unknown 15899548 Nonpathogen - hypothetical protein SSO2833 7 COG4900 COG4900, Predicted metallopeptidase General function prediction only 15898662 Common - hypothetical protein SSO1869 22 COG3945 COG3945, Uncharacterized conserved protein Function unknown 15898344 Nonpathogen - hypothetical protein SSO8278 1 None None None 15899637 Common - Second ORF in transposon ISC1048 SSO2925 22 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899220 Common - NAD-dependent deacetylase SSO2478 152 COG0846 SIR2, NAD-dependent protein deacetylases, SIR2 family Transcription 15897501 Common ubiA-2 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase SSO0583 105 COG0382 UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases Coenzyme metabolism 15899674 Nonpathogen - hypothetical protein SSO11575 1 None None None 15898939 Nonpathogen - hypothetical protein SSO2158 20 COG2263 COG2263, Predicted RNA methylase Translation, ribosomal structure and biogenesis 15899823 Nonpathogen - hypothetical protein SSO11986 1 None None None 15897898 Common fabG-2 3-oxoacyl-(acyl carrier protein) reductase (fabG-2) SSO1030 238 COG0300 DltE, Short-chain dehydrogenases of various substrate specificities General function prediction only 15898625 Nonpathogen - hypothetical protein SSO1823 1 None None None 15897463 Nonpathogen - hypothetical protein SSO0539 2 None None None 15898615 Nonpathogen - hypothetical protein SSO1813 2 COG1030 NfeD, Membrane-bound serine protease (ClpP class) Posttranslational modification, protein turnover, chaperones 15897436 Nonpathogen - First ORF in transposon ISC1217 SSO0512 1 None None None 15897571 Common tldE Zn-dependent protease, tldE protein homolog, putative (tldE) SSO0661 75 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 15898879 Common treY Maltooligosyltrehalose synthase (treY) SSO2095 139 COG3280 TreY, Maltooligosyl trehalose synthase Carbohydrate transport and metabolism 15897530 Common pyrB aspartate carbamoyltransferase catalytic subunit SSO0614 240 COG0540 PyrB, Aspartate carbamoyltransferase, catalytic chain Nucleotide transport and metabolism 15898644 Nonpathogen - First ORF in transposon ISC1217 SSO1845 1 None None None 15898725 Nonpathogen - hypothetical protein SSO9268 8 None None None 15897537 Nonpathogen - hypothetical protein SSO0621 2 None None None 15897882 Nonpathogen - hypothetical protein SSO1008 8 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15899535 Common zfx-like2 Ferredoxin like protein (zfx-like2) SSO11231 68 COG2440 FixX, Ferredoxin-like protein Energy production and conversion 15898420 Nonpathogen - hypothetical protein SSO8462 1 None None None 15899787 Nonpathogen - hypothetical protein SSO11920 2 None None None 15899919 Common - Second ORF in transposon ISC1316 SSO3217 76 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898981 Common tenA-1 Transcriptional activator (tenA-1) SSO2206 64 COG0819 TenA, Putative transcription activator Transcription 15897867 Common - Glucan 1,4 alpha glucosidase (Glucoamylase) SSO0990 32 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 15898015 Nonpathogen - hypothetical protein SSO1160 1 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 15898209 Common pdhB-1 Pyruvate dehydrogenase, beta subunit (lipoamide). (pdhB-1) SSO1370 212 COG0022 AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Energy production and conversion 15898666 Common - hypothetical protein SSO1873 5 None None None 15898404 Common - hypothetical protein SSO1589 83 COG1725 COG1725, Predicted transcriptional regulators Transcription 15899227 Common thrS Threonyl-tRNA synthetase (thrS) SSO2486 249 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15897451 Nonpathogen - hypothetical protein SSO0526 2 None None None 15898781 Nonpathogen - hypothetical protein SSO1986 1 None None None 15899842 Nonpathogen - hypothetical protein SSO3139 2 None None None 15898926 Common - Second ORF in transposon ISC1316 SSO2143 76 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897893 Nonpathogen - hypothetical protein SSO1025 9 COG4237 HyfE, Hydrogenase 4 membrane component (E) Energy production and conversion 15898746 Common - hypothetical protein SSO1948 16 COG4354 COG4354, Predicted bile acid beta-glucosidase Carbohydrate transport and metabolism 15898917 Common glpK-2 Glycerol kinase (glpK-2) SSO2133 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 15899333 Nonpathogen - hypothetical protein SSO2607 1 None None None 15898941 Nonpathogen - hypothetical protein SSO2160 20 COG3357 COG3357, Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon Transcription 15898163 Nonpathogen - hypothetical protein SSO1320 1 None None None 15897270 Common - hypothetical protein SSO0330 51 COG1260 INO1, Myo-inositol-1-phosphate synthase Lipid metabolism 15898636 Nonpathogen - hypothetical protein SSO1835 10 COG1708 COG1708, Predicted nucleotidyltransferases General function prediction only 15897150 Nonpathogen snRNP-1 Small nuclear riboprotein protein (snRNP-1) SSO5410 23 COG1958 LSM1, Small nuclear ribonucleoprotein (snRNP) homolog Transcription 15898443 Common - hypothetical protein SSO1623 27 COG2520 COG2520, Predicted methyltransferase General function prediction only 15898836 Common - Protease SSO2045 19 COG4953 PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC Cell envelope biogenesis, outer membrane 15898946 Nonpathogen - hypothetical protein SSO2165 1 None None None 15899662 Nonpathogen - hypothetical protein SSO2955 2 None None None 15897381 Common alaS-like1 Alanyl-tRNA synthetase truncated homolog (alaS-like1) SSO0450 175 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 15899504 Nonpathogen - hypothetical protein SSO2786 27 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15896996 Nonpathogen - hypothetical protein SSO0024 11 None None None 15899909 Common - Ser/thr protein kinase, putative SSO3207 44 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 15898456 Common - Penicillin acylase precursor SSO1638 66 COG2366 COG2366, Protein related to penicillin acylase General function prediction only 15897180 Common gatB aspartyl/glutamyl-tRNA amidotransferase subunit B SSO0232 211 COG0064 GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Translation, ribosomal structure and biogenesis 15898683 Nonpathogen - Thermopsin precursor, probable SSO1886 7 None None None 15899544 Common - hypothetical protein SSO2829 6 COG3264 COG3264, Small-conductance mechanosensitive channel Cell envelope biogenesis, outer membrane 15898900 Common - Cobalt transport ATP-binding protein (cbiO-2) homolog, putative SSO2116 249 COG1121 ZnuC, ABC-type Mn/Zn transport systems, ATPase component Inorganic ion transport and metabolism 15897045 Common dnaG DNA primase SSO0079 35 COG0358 DnaG, DNA primase (bacterial type) DNA replication, recombination, and repair 15897336 Common ribA 3,4-dihydroxy-2-butanone 4-phosphate synthase SSO0402 214 COG0108 RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Coenzyme metabolism 15899049 Nonpathogen - hypothetical protein SSO2282 2 None None None 15899124 Common metB hypothetical protein SSO2368 206 COG0626 MetC, Cystathionine beta-lyases/cystathionine gamma-synthases Amino acid transport and metabolism 15899577 Nonpathogen - hypothetical protein SSO2865 6 COG0190 FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase Coenzyme metabolism 15897298 Common pepQ Prolidase (Xaa-Pro dipeptidase) (pepQ) SSO0363 248 COG0006 PepP, Xaa-Pro aminopeptidase Amino acid transport and metabolism 15897340 Common metE-1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase SSO0406 32 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 15897514 Common hisD Histidinol dehydrogenase (HDH) (hisD) SSO0599 214 COG0141 HisD, Histidinol dehydrogenase Amino acid transport and metabolism 15899657 Common - Transposase ISC1229 SSO2951 40 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897122 Nonpathogen rpl40e 50S ribosomal protein L40e SSO5336 19 COG1552 RPL40A, Ribosomal protein L40E Translation, ribosomal structure and biogenesis 15897556 Nonpathogen - hypothetical protein SSO0646 22 COG2178 COG2178, Predicted RNA-binding protein of the translin family Translation, ribosomal structure and biogenesis 15897889 Common hycC hydrogenase 4 subunit B SSO1021 206 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 15899409 Common merR Mercury resistance operon repressor, probable (merR) SSO2688 158 COG0640 ArsR, Predicted transcriptional regulators Transcription 15899199 Common nfi Endonuclease V (nfi) SSO2454 72 COG1515 Nfi, Deoxyinosine 3'endonuclease (endonuclease V) DNA replication, recombination, and repair 15899815 Nonpathogen - hypothetical protein SSO11972 3 COG1826 TatA, Sec-independent protein secretion pathway components Intracellular trafficking and secretion 15899559 Nonpathogen - Last part of transposase in ISC1250 SSO11281 1 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897678 Common - hypothetical protein SSO0776 40 COG0575 CdsA, CDP-diglyceride synthetase Lipid metabolism 15897822 Nonpathogen - hypothetical protein SSO0941 4 COG2083 COG2083, Uncharacterized protein conserved in archaea Function unknown 15897284 Nonpathogen - prefoldin subunit alpha SSO0349 11 COG1730 GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding Posttranslational modification, protein turnover, chaperones 15898056 Nonpathogen - Third ORF in transposon ISC1217 SSO1203 1 None None None 15899314 Common sqdB L-lactate dehydrogenase (sqdB) SSO2585 165 COG0039 Mdh, Malate/lactate dehydrogenases Energy production and conversion 15899415 Common acaB-8 Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-8) SSO2697 93 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15898047 Common - Exopolyphosphatase (metaphosphatase), putative SSO1193 179 COG0248 GppA, Exopolyphosphatase Nucleotide transport and metabolism / Inorganic ion transport and metabolism 15899641 Common - First ORF in transposon ISC1048 SSO2930 31 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899283 Nonpathogen - hypothetical protein SSO2550 1 None None None 15897471 Nonpathogen - Transposase ISC1439 SSO0549 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897796 Common - AAA family ATPase, p60 katanin SSO0909 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 15898277 Nonpathogen - hypothetical protein SSO1439 3 COG2254 COG2254, Predicted HD superfamily hydrolase, possibly a nuclease DNA replication, recombination, and repair 15899923 Common - Transposase ISC1058 SSO3220 19 None None None 15898884 Nonpathogen - hypothetical protein SSO2100 1 None None None 15897037 Nonpathogen rpl18E 50S ribosomal protein L18e SSO0070 34 COG1727 RPL18A, Ribosomal protein L18E Translation, ribosomal structure and biogenesis 15899136 Nonpathogen - hypothetical protein SSO2383 31 COG1499 NMD3, NMD protein affecting ribosome stability and mRNA decay Translation, ribosomal structure and biogenesis 15899293 Common pdhD-4 Dihydrolipoamide dehydrogenase (pdhD-4) SSO2559 241 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15899901 Nonpathogen - hypothetical protein SSO3199 3 COG3431 COG3431, Predicted membrane protein Function unknown 15897529 Common pyrI aspartate carbamoyltransferase regulatory subunit SSO0613 64 COG1781 PyrI, Aspartate carbamoyltransferase, regulatory subunit Nucleotide transport and metabolism 15899190 Nonpathogen rpl13E 50S ribosomal protein L13e SSO2442 8 COG4352 RPL13, Ribosomal protein L13E Translation, ribosomal structure and biogenesis 15898894 Nonpathogen - hypothetical protein SSO2110 1 None None None 15897171 Common rpoA1 DNA-directed RNA polymerase subunit alpha SSO0225 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 15897730 Common rfbB-1 dTDP-Glucose 4,6-dehydratase (rfbB-1) SSO0830 233 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 15899790 Nonpathogen - hypothetical protein SSO3081 1 None None None 15897136 Nonpathogen - hypothetical protein SSO0185 19 COG3379 COG3379, Uncharacterized conserved protein Function unknown 15899729 Nonpathogen - First ORF in transposase ISC1058 SSO11734 2 None None None 15897146 Common - Membrane conserved hypothetical protein SSO0195 37 COG1293 COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP Transcription 15898113 Common alaS-like2 Alanyl-tRNA synthetase truncated homolog (alaS-like2) SSO1271 60 COG2872 COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain General function prediction only 15898131 Common - hypothetical protein SSO1288 10 COG0747 DdpA, ABC-type dipeptide transport system, periplasmic component Amino acid transport and metabolism 15899619 Common crtB Phytoene synthetase (crtB) SSO2905 103 COG1562 ERG9, Phytoene/squalene synthetase Lipid metabolism 15897327 Nonpathogen rpl14E 50S ribosomal protein L14e SSO5763 18 COG2163 RPL14A, Ribosomal protein L14E/L6E/L27E Translation, ribosomal structure and biogenesis 15897089 Nonpathogen - hypothetical protein SSO0131 4 None None None 15898407 Common - hypothetical protein SSO1593 36 COG2223 NarK, Nitrate/nitrite transporter Inorganic ion transport and metabolism 15898447 Nonpathogen - Partial transposase ISC1225 SSO1627 4 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899040 Common - hypothetical protein SSO2273 54 COG1321 TroR, Mn-dependent transcriptional regulator Transcription 15897913 Common - hypothetical protein SSO1046 16 COG1100 COG1100, GTPase SAR1 and related small G proteins General function prediction only 15898423 Common pcp-like pyrrolidone-carboxylate peptidase SSO1607 53 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 15897291 Common - nicotinate phosphoribosyltransferase SSO0354 112 COG1488 PncB, Nicotinic acid phosphoribosyltransferase Coenzyme metabolism 15898225 Common - Second ORF in transposon ISC1190 SSO1386 83 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899345 Nonpathogen - hypothetical protein SSO2620 17 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 15897770 Common - hypothetical protein SSO0879 154 COG0043 UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Coenzyme metabolism 15898419 Common - Third ORF in transposon ISC1229 SSO1603 26 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899032 Common - hypothetical protein SSO2262 86 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15899614 Common - Glycosyltransferase SSO2900 50 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15897142 Nonpathogen - hypothetical protein SSO0191 7 None None None 15899328 Nonpathogen - hypothetical protein SSO2601 3 COG3368 COG3368, Predicted permease General function prediction only 15897499 Common - GTP binding protein, hypothetical SSO0581 91 COG1161 COG1161, Predicted GTPases General function prediction only 15898223 Common - First ORF in transposon ISC1078 SSO1384 9 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897921 Nonpathogen - Oligosaccharyl transferase STT3 subunit (B5) (integral membrane protein 1) SSO1052 10 COG1287 COG1287, Uncharacterized membrane protein, required for N-linked glycosylation General function prediction only 15899257 Common lipP-2 Lipase (lipP-2) SSO2521 122 COG0657 Aes, Esterase/lipase Lipid metabolism 15897521 Nonpathogen - Zn finger protein, hypothetical SSO0605 9 COG1594 RPB9, DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS Transcription 15899250 Common - 3-hydroxyacyl-CoA dehydrogenase/enoyl CoA hydratase SSO2514 193 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 15898583 Common - hypothetical protein SSO1785 47 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899069 Common cbiC precorrin-8X methylmutase SSO2308 119 COG2082 CobH, Precorrin isomerase Coenzyme metabolism 15898688 Common - hypothetical protein SSO1892 9 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 15899941 Common ocd-like2 Ornithine cyclodeaminase related protein (ocd-like2) SSO3243 77 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 15898005 Nonpathogen - hypothetical protein SSO1149 6 None None None 15898938 Common - hypothetical protein SSO2157 57 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 15897667 Common gatA-1 Glutamyl-tRNA amidotransferase, subunit A (gatA-1) SSO0765 222 COG0154 GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Translation, ribosomal structure and biogenesis 15897269 Common NuoN NADH dehydrogenase subunit N SSO0329 206 COG1007 NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) Energy production and conversion 15897339 Nonpathogen pcnA-1 Proliferating cell nuclear antigen homolog (PCNA) (pcnA-1) SSO0405 34 COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) DNA replication, recombination, and repair 15899583 Common hdb-2 3-hydroxyacyl-CoA dehydrogenase (hdb-2) SSO2871 161 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 15897691 Common - hypothetical protein SSO0788 64 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15898074 Nonpathogen - hypothetical protein SSO1222 8 None None None 15898652 Common htpX-1 Heat shock protein (htpX-1) SSO1859 183 COG0501 HtpX, Zn-dependent protease with chaperone function Posttranslational modification, protein turnover, chaperones 15898576 Nonpathogen - Transposase ISC1439 SSO1779 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899856 Nonpathogen - hypothetical protein SSO3150 7 COG3374 COG3374, Predicted membrane protein Function unknown 15898976 Nonpathogen - hypothetical protein SSO2201 20 COG1549 COG1549, Queuine tRNA-ribosyltransferases, contain PUA domain Translation, ribosomal structure and biogenesis 15898096 Nonpathogen - hypothetical protein SSO1252 10 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15897091 Nonpathogen - First ORF in transposon ISC1212 SSO0133 1 None None None 15899865 Common lplA-2 Lipoate-protein ligase A (lplA-2) SSO3159 94 COG0095 LplA, Lipoate-protein ligase A Coenzyme metabolism 15897196 Common - Proliferating-cell nucleolar antigen p120 homolog SSO0252 208 COG0144 Sun, tRNA and rRNA cytosine-C5-methylases Translation, ribosomal structure and biogenesis 15897760 Nonpathogen - hypothetical protein SSO0866 6 None None None 15899562 Common - Sugar-binding periplasmic protein SSO2847 44 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15897459 Common - hypothetical protein SSO0535 189 COG3425 PksG, 3-hydroxy-3-methylglutaryl CoA synthase Lipid metabolism 15898752 Nonpathogen - hypothetical protein SSO1956 2 None None None 15897854 Nonpathogen - hypothetical protein SSO6901 5 None None None 15897332 Common trzA-like N-ethylammeline chlorohydrolase related protein (trzA-like) SSO0398 65 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15898701 Common acsA-3 Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-3) SSO9201 134 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15897034 Nonpathogen rpoN DNA-directed RNA polymerase subunit N SSO5140 34 COG1644 RPB10, DNA-directed RNA polymerase, subunit N (RpoN/RPB10) Transcription 15897985 Common - hypothetical protein SSO1126 45 COG2210 COG2210, Uncharacterized conserved protein Function unknown 15899773 Common - Arabinose ABC transporter, permease SSO3068 147 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15898190 Common - First ORF in transposon ISC1778 SSO1349 23 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15899902 Nonpathogen - hypothetical protein SSO3200 13 COG1833 COG1833, Uncharacterized conserved protein Function unknown 15897317 Common thrS-like Threonyl-tRNA synthetase homolog (thrS-like) SSO0384 243 COG0441 ThrS, Threonyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898070 Common - Methylmalonate-semialdehyde dehydrogenase SSO1218 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15899595 Common pcaC 4-carboxymucolactone decarboxylase (pcaC) SSO2884 80 COG0599 COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Function unknown 15899624 Common cysH phosphoadenosine phosphosulfate reductase SSO2911 165 COG0175 CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes Amino acid transport and metabolism / Coenzyme metabolism 15898958 Common asd-2 aspartate-semialdehyde dehydrogenase SSO2178 205 COG0136 Asd, Aspartate-semialdehyde dehydrogenase Amino acid transport and metabolism 15897247 Common aroB 3-dehydroquinate synthase SSO0305 205 COG0337 AroB, 3-dehydroquinate synthetase Amino acid transport and metabolism 15899153 Common - ABC transporter, ATP binding protein SSO2402 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15899732 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO3026 1 None None None 15897895 Nonpathogen - hypothetical protein SSO1027 1 None None None 15897098 Nonpathogen - SSV1 integrase fragment homolog (orf D-335) SSO0143 5 COG4342 COG4342, Uncharacterized protein conserved in archaea Function unknown 15897204 Common - geranylgeranylglyceryl phosphate synthase-like protein SSO0259 41 COG1646 COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold General function prediction only 15899210 Common - ABC transporter, putative SSO2468 62 COG4986 COG4986, ABC-type anion transport system, duplicated permease component Inorganic ion transport and metabolism 15897977 Nonpathogen - hypothetical protein SSO1116 3 None None None 15897443 Nonpathogen - hypothetical protein SSO0520 1 None None None 15899550 Common - ABC transporter, binding protein (branched chain amino acid) SSO2835 60 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 15898512 Common - Orf in transposon ISC1491 SSO1699 7 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898909 Nonpathogen - hypothetical protein SSO2125 2 COG2405 COG2405, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897819 Nonpathogen rps30E 30S ribosomal protein S30e SSO6817 10 COG4919 COG4919, Ribosomal protein S30 Translation, ribosomal structure and biogenesis 15899012 Nonpathogen - hypothetical protein SSO2238 2 None None None 15898394 Nonpathogen - DsrP protein, putative SSO1578 6 COG3301 NrfD, Formate-dependent nitrite reductase, membrane component Inorganic ion transport and metabolism 15897807 Common gcvH glycine cleavage system protein H SSO0920 185 COG0509 GcvH, Glycine cleavage system H protein (lipoate-binding) Amino acid transport and metabolism 15898440 Common - Glycosyltransferase SSO1620 65 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899055 Nonpathogen - hypothetical protein SSO2288 2 None None None 15897810 Nonpathogen - hypothetical protein SSO0923 26 COG0704 PhoU, Phosphate uptake regulator Inorganic ion transport and metabolism 15897705 Nonpathogen - Partial transposase in ISC1190 SSO0802 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898199 Nonpathogen - hypothetical protein SSO1359 2 None None None 15898494 Nonpathogen - hypothetical protein SSO1680 8 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15898243 Nonpathogen - hypothetical protein SSO1403 2 COG2254 COG2254, Predicted HD superfamily hydrolase, possibly a nuclease DNA replication, recombination, and repair 15897764 Common argF Ornithine carbamoyltransferase (argF) SSO0871 240 COG0078 ArgF, Ornithine carbamoyltransferase Amino acid transport and metabolism 15898551 Common - First ORF in transposon ISC1078 SSO1750 10 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898628 Nonpathogen - First ORF in transposon ISC1212 SSO1826 1 None None None 15898863 Nonpathogen - Transposase ISC1217 SSO2077 1 None None None 15898437 Nonpathogen - hypothetical protein SSO1617 1 None None None 15898716 Common - hypothetical protein SSO1918 31 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15898970 Nonpathogen - hypothetical protein SSO2193 14 COG1585 COG1585, Membrane protein implicated in regulation of membrane protease activity Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion 15899516 Nonpathogen - hypothetical protein SSO2798 2 COG2512 COG2512, Uncharacterized membrane-associated protein/domain Function unknown 15899718 Common - Dehydrogenase, putative SSO3011 180 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15899670 Common ilvB-5 pyruvate dehydrogenase SSO2962 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15897371 Nonpathogen - hypothetical protein SSO0441 2 COG5314 COG5314, Conjugal transfer/entry exclusion protein Intracellular trafficking and secretion 15897960 Nonpathogen - hypothetical protein SSO1096 3 None None None 15898807 Common - Protease, putative SSO2015 22 COG0826 COG0826, Collagenase and related proteases Posttranslational modification, protein turnover, chaperones 15897047 Common - N-terminal acetyltransferase complex ard1 subunit SSO0082 110 COG0456 RimI, Acetyltransferases General function prediction only 15897626 Common leuB 3-isopropylmalate dehydrogenase (leuB) SSO0723 222 COG0473 LeuB, Isocitrate/isopropylmalate dehydrogenase Amino acid transport and metabolism 15897745 Nonpathogen - hypothetical protein SSO0846 1 None None None 15899020 Common czcD Probable cation transport protein (czcD) SSO2247 110 COG1230 CzcD, Co/Zn/Cd efflux system component Inorganic ion transport and metabolism 15898993 Common - hypothetical protein SSO2219 219 COG0061 COG0061, Predicted sugar kinase Carbohydrate transport and metabolism 15897482 Nonpathogen atpF ATP synthase subunit F (atpF) SSO0560 7 COG1436 NtpG, Archaeal/vacuolar-type H+-ATPase subunit F Energy production and conversion 15899472 Common porA-2 Pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-2) SSO2757 138 COG0674 PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit Energy production and conversion 15898189 Nonpathogen - Second ORF in transposon ISC1778 SSO1348 6 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898171 Nonpathogen - hypothetical protein SSO1330 8 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15899456 Nonpathogen - hypothetical protein SSO2741 1 None None None 15898241 Nonpathogen - hypothetical protein SSO1401 1 None None None 15898601 Nonpathogen dbpA DNA-binding protein, conserved dbpA homolog (dbpA) SSO8948 2 None None None 15899097 Nonpathogen - peptide chain release factor 1 SSO2339 34 COG1503 eRF1, Peptide chain release factor 1 (eRF1) Translation, ribosomal structure and biogenesis 15898064 Common - Transposase ISC1058 SSO1212 19 None None None 15899727 Nonpathogen - Permease SSO3021 3 None None None 15897901 Common - hypothetical protein SSO1033 31 COG3055 COG3055, Uncharacterized protein conserved in bacteria Function unknown 15897096 Nonpathogen - Transposase ISC1439 SSO0141 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898140 Nonpathogen - hypothetical protein SSO1298 1 None None None 15897603 Nonpathogen rpl30p 50S ribosomal protein L30P SSO0697 34 COG1841 RpmD, Ribosomal protein L30/L7E Translation, ribosomal structure and biogenesis 15898029 Nonpathogen - Holliday-junction resolvase SSO1176 13 COG1591 COG1591, Holliday junction resolvase - archaeal type DNA replication, recombination, and repair 15897920 Nonpathogen - H/ACA RNA-protein complex component Nop10p SSO7115 22 COG2260 COG2260, Predicted Zn-ribbon RNA-binding protein Translation, ribosomal structure and biogenesis 15898531 Nonpathogen - hypothetical protein SSO1727 2 None None None 15897170 Common rpoA2 DNA-directed RNA polymerase subunit A'' SSO0223 249 COG0086 RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription 15899875 Common - First ORF in transposon ISC1778 SSO3171 23 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15898983 Common - hypothetical protein SSO2208 38 COG1637 COG1637, Predicted nuclease of the RecB family DNA replication, recombination, and repair 15897181 Common - hypothetical protein SSO0233 56 COG0503 Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins Nucleotide transport and metabolism 15899029 Nonpathogen - hypothetical protein SSO2257 9 COG4028 COG4028, Predicted P-loop ATPase/GTPase General function prediction only 15898285 Nonpathogen - hypothetical protein SSO1449 4 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 15897492 Common - Glutamine amidotransferase, putative SSO0571 85 COG0311 PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis Coenzyme metabolism 15899272 Common glgP Glucan phosphorylase, putative (glgP or malP) SSO2538 93 COG0058 GlgP, Glucan phosphorylase Carbohydrate transport and metabolism 15898567 Nonpathogen - hypothetical protein SSO1767 1 None None None 15899432 Common adh-11 Alcohol dehydrogenase (Zn containing) (adh-11) SSO2717 182 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 15898310 Nonpathogen - Second ORF in transposon ISC1225 SSO1480 5 None None None 15898248 Nonpathogen - First ORF in transposon ISC1439 SSO7986 1 None None None 15899378 Nonpathogen soxC Quinol oxidase (SoxABC), cytochrome B subunit, C-terminal part (soxC) SSO10828 1 None None None 15898396 Common - Molybdopterin oxidoreductase, molybdopterin binding subunit SSO1580 170 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 15897647 Common - hypothetical protein SSO0747 156 COG0565 LasT, rRNA methylase Translation, ribosomal structure and biogenesis 15899436 Nonpathogen - First ORF in transposon ISC1225 SSO2721 1 None None None 15898091 Nonpathogen - Third ORF in transposon ISC1217 SSO7483 1 None None None 15897395 Nonpathogen - hypothetical protein SSO0468 28 COG1992 COG1992, Uncharacterized conserved protein Function unknown 15897134 Common - Porphobilinogen deaminase SSO0183 222 COG0181 HemC, Porphobilinogen deaminase Coenzyme metabolism 15899465 Nonpathogen - hypothetical protein SSO2750 3 None None None 15899666 Nonpathogen - First ORF in transposon ISC1395 SSO2957 1 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899370 Common - hypothetical protein SSO2644 14 None None None 15898857 Common acsA-7 Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-7) SSO2070 218 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15899083 Nonpathogen - hypothetical protein SSO2325 2 None None None 15898749 Common cpsA-2 Thermostable carboxypeptidase (cpsA-2) SSO1952 176 COG1473 AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase General function prediction only 15898337 Nonpathogen - hypothetical protein SSO1510 14 COG1604 COG1604, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15899079 Nonpathogen - Transposase ISC1173 SSO2320 3 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15898210 Nonpathogen - One of two inversely orientated ORFs in a partial ISC1043 SSO1371 1 None None None 15898873 Nonpathogen - hypothetical protein SSO2089 3 COG0819 TenA, Putative transcription activator Transcription 15897081 Nonpathogen - hypothetical protein SSO0121 2 None None None 15898700 Nonpathogen - Transposase ISC1439 SSO1904 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897489 Common proS prolyl-tRNA synthetase SSO0569 246 COG0442 ProS, Prolyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898320 Nonpathogen - hypothetical protein SSO1489 1 None None None 15897720 Common - hypothetical protein SSO0819 84 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15898965 Common - Pterin-4-alpha-carbinolamine dehydratase, putative SSO2187 118 COG2154 COG2154, Pterin-4a-carbinolamine dehydratase Coenzyme metabolism 15899597 Nonpathogen - hypothetical protein SSO2886 1 None None None 15897016 Nonpathogen doxE Terminal oxidase, small hydrophobic subunit (doxE) SSO5098 2 None None None 15898558 Common - hypothetical protein SSO8861 113 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15898518 Common - Second ORF in transposon ISC1229 SSO1708 18 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898370 Common - Partial transposase ISC1229 SSO1548 22 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898283 Nonpathogen - hypothetical protein SSO1445 2 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899449 Nonpathogen - hypothetical protein SSO2734 1 None None None 15898842 Common - hypothetical protein SSO2052 96 COG3384 COG3384, Uncharacterized conserved protein Function unknown 15898104 Nonpathogen - hypothetical protein SSO1261 12 COG1611 COG1611, Predicted Rossmann fold nucleotide-binding protein General function prediction only 15897361 Common - HAM1 protein SSO0432 229 COG0127 COG0127, Xanthosine triphosphate pyrophosphatase Nucleotide transport and metabolism 15898649 Nonpathogen - First ORF in transposon ISC1359 SSO1856 2 None None None 15897124 Common aspC aspartyl-tRNA synthetase SSO0173 249 COG0017 AsnS, Aspartyl/asparaginyl-tRNA synthetases Translation, ribosomal structure and biogenesis 15898178 Common - First ORF in transposon ISC1778 SSO1335 21 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15898300 Common - hypothetical protein SSO1468 51 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15898340 Common - hypothetical protein SSO1514 18 COG1336 COG1336, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15899090 Common - hypothetical protein SSO2331 6 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15897756 Nonpathogen - hypothetical protein SSO0860 5 None None None 15898536 Nonpathogen - Partial ORF in transposase ISC1217 SSO1732 1 None None None 15897420 Common proC pyrroline-5-carboxylate reductase SSO0495 215 COG0345 ProC, Pyrroline-5-carboxylate reductase Amino acid transport and metabolism 15899447 Common speB-2 Agmatinase (agmatine ureohydrolase) (speB-2) SSO2732 153 COG0010 SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family Amino acid transport and metabolism 15898845 Common - hypothetical protein SSO2055 100 COG1853 COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family General function prediction only 15899187 Nonpathogen - hypothetical protein SSO2439 35 COG2520 COG2520, Predicted methyltransferase General function prediction only 15897425 Nonpathogen - hypothetical protein SSO0501 8 COG0685 MetF, 5,10-methylenetetrahydrofolate reductase Amino acid transport and metabolism 15898345 Common - Partial transposase from ISC1048 SSO1518 20 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898838 Common - Multidrug resistance protein SSO2047 210 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897741 Nonpathogen - hypothetical protein SSO6659 2 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898135 Common - hypothetical protein SSO1292 73 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 15897651 Nonpathogen rpoF DNA-directed RNA polymerase, subunit F (rpoF) SSO0751 5 COG1460 COG1460, Uncharacterized protein conserved in archaea Function unknown 15899763 Common - Maltose ABC transporter, permease SSO3059 219 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898799 Common - First ORF in transposon ISC1048 SSO2006 15 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898330 Common - hypothetical protein SSO1501 12 None None None 15897272 Nonpathogen - hypothetical protein SSO0334 4 None None None 15897535 Nonpathogen - hypothetical protein SSO0619 2 COG5491 VPS24, Conserved protein implicated in secretion Cell motility and secretion 15897391 Common - hypothetical protein SSO0463 48 COG0705 GlpG, Uncharacterized membrane protein (homolog of Drosophila rhomboid) General function prediction only 15898218 Nonpathogen - hypothetical protein SSO1379 1 None None None 15898523 Nonpathogen - hypothetical protein SSO1714 1 None None None 15896985 Nonpathogen - hypothetical protein SSO0013 2 None None None 15898454 Nonpathogen - hypothetical protein SSO1636 2 None None None 15898831 Common pepQ-like2 Prolidase (Xaa-Pro dipeptidase) (pepQ-like2) SSO2040 82 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 15898827 Common - ATP-dependent RNA helicase SSO2036 233 COG0513 SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis 15899062 Common cbiE cobalt-precorrin-6Y C(5)-methyltransferase SSO2296 71 COG2241 CobL, Precorrin-6B methylase 1 Coenzyme metabolism 15899837 Common - Heterodisulfide reductase related protein SSO3131 67 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 15897307 Common - Ferripyochelin binding protein SSO0372 219 COG0663 PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily General function prediction only 15899171 Common - Phytoene dehydrogenase related protein SSO2422 103 COG1233 COG1233, Phytoene dehydrogenase and related proteins Secondary metabolites biosynthesis, transport, and catabolism 15897305 Common - hypothetical protein SSO0370 34 COG1907 COG1907, Predicted archaeal sugar kinases General function prediction only 15897117 Common - Methyl coenzyme M reductase system, component A2 homolog SSO0167 249 COG1122 CbiO, ABC-type cobalt transport system, ATPase component Inorganic ion transport and metabolism 15898124 Common dppD-2 Oligo/dipeptide transport, ATP binding protein . (dppD-2) SSO1282 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15899848 Common acd-7 Acyl-CoA dehydrogenase (acd-7) SSO3145 155 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15898363 Common - hypothetical protein SSO1537 71 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15897564 Common paaF-2 Enoyl CoA hydratase (paaF-2) SSO0654 183 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15897109 Nonpathogen - hypothetical protein SSO5317 9 None None None 15898774 Nonpathogen - First ORF in transposon ISC1225 SSO1978 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897884 Common - NADH dehydrogenase SSO1010 218 COG1252 Ndh, NADH dehydrogenase, FAD-containing subunit Energy production and conversion 15897217 Nonpathogen - hypothetical protein SSO5544 12 COG1938 COG1938, Archaeal enzymes of ATP-grasp superfamily General function prediction only 15897461 Nonpathogen - hypothetical protein SSO0537 1 None None None 15899683 Common soxM Quinol oxidase-2, subunit I/III, cytochrome aa3 (soxM) SSO2973 162 COG0843 CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 Energy production and conversion 15897717 Nonpathogen - hypothetical protein SSO0816 1 None None None 15898377 Common - First ORF in transposon ISC1491 SSO1556 44 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899405 Nonpathogen - hypothetical protein SSO2683 1 None None None 15899003 Common - Transport protein, hypothetical SSO2228 15 COG0053 MMT1, Predicted Co/Zn/Cd cation transporters Inorganic ion transport and metabolism 15897916 Nonpathogen - hypothetical protein SSO1049 2 None None None 15899000 Nonpathogen - hypothetical protein SSO2225 16 COG2023 RPR2, RNase P subunit RPR2 Translation, ribosomal structure and biogenesis 15899925 Nonpathogen - hypothetical protein SSO3225 8 COG4346 COG4346, Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase Posttranslational modification, protein turnover, chaperones 15899424 Common - hypothetical protein SSO2707 4 COG2259 COG2259, Predicted membrane protein Function unknown 15897996 Common - hypothetical protein SSO1140 81 None None None 15898670 Nonpathogen - hypothetical protein SSO9115 2 COG5466 COG5466, Predicted small metal-binding protein Function unknown 15898058 Common porB-1 2-ketoisovalerate ferredoxin oxidoreductase subunit beta SSO1206 113 COG1013 PorB, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit Energy production and conversion 15897011 Common - Second ORF in transposon ISC1078 SSO0041 24 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898020 Nonpathogen - hypothetical protein SSO1167 5 COG3387 SGA1, Glucoamylase and related glycosyl hydrolases Carbohydrate transport and metabolism 15899483 Nonpathogen - hypothetical protein SSO2768 1 None None None 15899493 Common - hypothetical protein SSO2778 146 COG0589 UspA, Universal stress protein UspA and related nucleotide-binding proteins Signal transduction mechanisms 15899359 Nonpathogen - hypothetical protein SSO2633 5 None None None 15899734 Nonpathogen - Transposase ISC1234 SSO3028 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15899647 Common - Permease (proline/betaine) SSO2938 152 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15897232 Nonpathogen - Integrase, probable (fragment) SSO0288 1 COG5397 COG5397, Uncharacterized conserved protein Function unknown 15897110 Common rimK-1 Ribosomal protein S6 modification protein (rimK-1) SSO0159 95 COG0189 RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) Coenzyme metabolism / Translation, ribosomal structure and biogenesis 15898035 Common - First ORF in transposon ISC1778 SSO1181 21 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897236 Nonpathogen rpoL DNA-directed RNA polymerase, subunit L (rpoL) SSO5577 14 COG1761 RPB11, DNA-directed RNA polymerase, subunit L Transcription 15899701 Nonpathogen - hypothetical protein SSO2991 1 None None None 15898490 Nonpathogen - hypothetical protein SSO1675 2 None None None 15897386 Common - hypothetical protein SSO0455 18 COG1280 RhtB, Putative threonine efflux protein Amino acid transport and metabolism 15897221 Common - Proteasome subunit SSO0278 47 COG0638 PRE1, 20S proteasome, alpha and beta subunits Posttranslational modification, protein turnover, chaperones 15898560 Nonpathogen - hypothetical protein SSO1762 2 None None None 15898432 Nonpathogen - Transposase ISC1290 SSO1612 2 None None None 15897950 Common gctB Glutaconate CoA-transferase, subunit B (gctB) SSO1085 39 COG2057 AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit Lipid metabolism 15898294 Nonpathogen - hypothetical protein SSO1461 1 None None None 15898761 Common - Transposase ISC1190 SSO1966 98 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897239 Nonpathogen rpl10e 50S ribosomal protein L10e SSO0294 34 COG0197 RplP, Ribosomal protein L16/L10E Translation, ribosomal structure and biogenesis 15897961 Nonpathogen - hypothetical protein SSO1098 7 COG4345 COG4345, Uncharacterized protein conserved in archaea Function unknown 15898085 Nonpathogen - Second ORF in transposon ISC1491 SSO7469 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898450 Common pqqE-3 Coenzyme PQQ synthesis protein E (pqqE-3) SSO1632 199 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15897405 Common - hypothetical protein SSO0479 94 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15897946 Nonpathogen - hypothetical protein SSO1079 5 COG1361 COG1361, S-layer domain Cell envelope biogenesis, outer membrane 15899891 Nonpathogen - hypothetical protein SSO3186 5 COG5440 COG5440, Uncharacterized conserved protein Function unknown 15899009 Nonpathogen - hypothetical protein SSO2234 28 COG1650 COG1650, Uncharacterized protein conserved in archaea Function unknown 15899699 Common - Diphosphomevalonate decarboxylase, putative SSO2989 28 COG3407 MVD1, Mevalonate pyrophosphate decarboxylase Lipid metabolism 15899860 Common - First ORF in transposon ISC1778 SSO3154 21 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15899166 Nonpathogen - hypothetical protein SSO2413 2 None None None 15899205 Common - Phosphate permease, putative SSO2461 25 COG0306 PitA, Phosphate/sulphate permeases Inorganic ion transport and metabolism 15898253 Nonpathogen - Partial transposase ISC1250 SSO1414 1 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898251 Nonpathogen - hypothetical protein SSO1412 1 None None None 15899142 Common icaA Glucosaminyltransferase, intercellular adhesion protein A homolog, putative (icaA) SSO2389 131 COG1215 COG1215, Glycosyltransferases, probably involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15897615 Nonpathogen rps17p 30S ribosomal protein S17P SSO0709 34 COG0186 RpsQ, Ribosomal protein S17 Translation, ribosomal structure and biogenesis 15897833 Common - hypothetical protein SSO0954 142 COG0615 TagD, Cytidylyltransferase Cell envelope biogenesis, outer membrane / Lipid metabolism 15897412 Common - Iron (III) ABC transporter, permease protein (HEMU 1) SSO0486 189 COG0609 FepD, ABC-type Fe3+-siderophore transport system, permease component Inorganic ion transport and metabolism 15899585 Common acaB-9 acetyl-CoA acetyltransferase SSO2874 166 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15898235 Nonpathogen - hypothetical protein SSO1395 1 COG5550 COG5550, Predicted aspartyl protease Posttranslational modification, protein turnover, chaperones 15898795 Nonpathogen - hypothetical protein SSO2001 3 COG2254 COG2254, Predicted HD superfamily hydrolase, possibly a nuclease DNA replication, recombination, and repair 15899756 Common malA Alpha-glucosidase (malA) SSO3051 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 15899873 Common - ABC transporter, ATP binding protein related protein SSO3169 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15897350 Common - cofactor-independent phosphoglycerate mutase SSO0417 51 COG3635 COG3635, Predicted phosphoglycerate mutase, AP superfamily Carbohydrate transport and metabolism 15899078 Nonpathogen - hypothetical protein SSO2319 2 None None None 15898409 Common alkK-1 Medium-chain-fatty-acid--CoA ligase (alkK-1) SSO1595 97 COG1541 PaaK, Coenzyme F390 synthetase Coenzyme metabolism 15899851 Nonpathogen - Third ORF in partial transposon ISC1160 SSO12063 1 None None None 15899051 Nonpathogen - hypothetical protein SSO2284 2 None None None 15898681 Nonpathogen - hypothetical protein SSO1884 5 COG5260 TRF4, DNA polymerase sigma DNA replication, recombination, and repair 15898692 Common - Transposase ISC1078 SSO1897 35 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897887 Common cysA-1 Thiosulfate sulfurtransferase (cysA-1) SSO1019 146 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 15897009 Nonpathogen - hypothetical protein SSO0039 27 COG1992 COG1992, Uncharacterized conserved protein Function unknown 15897721 Nonpathogen - hypothetical protein SSO0820 4 COG0463 WcaA, Glycosyltransferases involved in cell wall biogenesis Cell envelope biogenesis, outer membrane 15897343 Common - sirohydrochlorin cobaltochelatase SSO0410 60 COG2138 COG2138, Uncharacterized conserved protein Function unknown 15899197 Common - hypothetical protein SSO2452 102 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 15899509 Nonpathogen - hypothetical protein SSO2791 2 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15899861 Common wrbA Tryptophan repressor binding protein (wrbA) SSO3155 118 COG0655 WrbA, Multimeric flavodoxin WrbA General function prediction only 15897697 Nonpathogen - Transposase ISC1476 SSO0794 13 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899677 Nonpathogen - hypothetical protein SSO2967 1 None None None 15899195 Common - TATA binding protein (TBP)-interacting protein (TIP49-like), putative SSO2450 34 COG1224 TIP49, DNA helicase TIP49, TBP-interacting protein Transcription 15897824 Nonpathogen - N(2),N(2)-dimethylguanosine tRNA methyltransferase SSO0943 38 COG1867 TRM1, N2,N2-dimethylguanosine tRNA methyltransferase Translation, ribosomal structure and biogenesis 15897813 Common - hypothetical protein SSO0928 157 COG0719 SufB, ABC-type transport system involved in Fe-S cluster assembly, permease component Posttranslational modification, protein turnover, chaperones 15897319 Nonpathogen - hypothetical protein SSO0387 29 COG1709 COG1709, Predicted transcriptional regulator Transcription 15897215 Nonpathogen - hypothetical protein SSO5542 19 COG1370 COG1370, Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit Posttranslational modification, protein turnover, chaperones 15897728 Nonpathogen - hypothetical protein SSO0828 2 None None None 15897056 Common - hypothetical protein SSO0094 86 COG0561 Cof, Predicted hydrolases of the HAD superfamily General function prediction only 15899719 Common - ABC transporter, ATP binding protein SSO3012 249 COG1132 MdlB, ABC-type multidrug transport system, ATPase and permease components Defense mechanisms 15897811 Common - ABC transporter SSO0925 247 COG0396 SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component Posttranslational modification, protein turnover, chaperones 15897334 Common ribH riboflavin synthase subunit beta SSO0400 213 COG0054 RibH, Riboflavin synthase beta-chain Coenzyme metabolism 15897182 Nonpathogen - hypothetical protein SSO0234 2 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15897241 Nonpathogen - hypothetical protein SSO0296 2 None None None 15897680 Nonpathogen - hypothetical protein SSO0778 3 None None None 15898301 Common - hypothetical protein SSO1469 29 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15899273 Nonpathogen - hypothetical protein SSO2539 2 None None None 15898858 Common bcp-1 Peroxiredoxin, bacterioferritin comigratory protein homolog (bcp-1) SSO2071 210 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 15897266 Common NuoI NADH dehydrogenase subunit I SSO0326 197 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 15897711 Nonpathogen - hypothetical protein SSO0807 2 COG3427 COG3427, Uncharacterized conserved protein Function unknown 15897549 Common purM phosphoribosylaminoimidazole synthetase SSO0636 234 COG0150 PurM, Phosphoribosylaminoimidazole (AIR) synthetase Nucleotide transport and metabolism 15898389 Common norB-1 Nitric oxide reductase, subunit I (cytochrome B) (norB-1) SSO1571 72 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 15899593 Nonpathogen - Transposase ISC1234 SSO2882 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15897809 Nonpathogen - hypothetical protein SSO0922 2 COG0071 IbpA, Molecular chaperone (small heat shock protein) Posttranslational modification, protein turnover, chaperones 15897448 Nonpathogen - Transposase ISC1234 SSO0524 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15898361 Common - Multidrug resistance transporter related protein SSO1535 219 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15898381 Nonpathogen - hypothetical protein SSO1563 3 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15897702 Nonpathogen - hypothetical protein SSO0799 5 None None None 15897252 Common aroD 3-dehydroquinate dehydratase, putative (aroD) SSO0311 18 COG0710 AroD, 3-dehydroquinate dehydratase Amino acid transport and metabolism 15899075 Nonpathogen FlaJ Flagella-related protein J, putative (FlaJ) SSO2315 19 COG1955 FlaJ, Archaeal flagella assembly protein J Cell motility and secretion / Intracellular trafficking and secretion 15899771 Common - Arabinose ABC transporter, arabinose binding protein SSO3066 24 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15899216 Nonpathogen - Transcriptional regulator, putative SSO2474 2 COG3355 COG3355, Predicted transcriptional regulator Transcription 15898391 Common norB-2 Nitric oxide reductase, subunit I (cytochrome B) (norB-2) SSO1573 4 COG3256 NorB, Nitric oxide reductase large subunit Inorganic ion transport and metabolism 15897438 Common - Third ORF in transposon ISC1229 SSO0514 12 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899103 Common asnC Transcriptional regulatory protein, AsnC family (asnC) SSO2347 171 COG1522 Lrp, Transcriptional regulators Transcription 15897151 Common - hypothetical protein SSO0200 11 COG4189 COG4189, Predicted transcriptional regulator Transcription 15898617 Nonpathogen - hypothetical protein SSO1815 2 None None None 15899580 Common - hypothetical protein SSO2868 9 None None None 15898559 Common - Orf in partial transposon ISC1778 SSO1760 24 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15899037 Nonpathogen - hypothetical protein SSO2269 2 None None None 15898462 Common - hypothetical protein SSO1643 22 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 15897202 Nonpathogen - hypothetical protein SSO0258 33 COG1571 COG1571, Predicted DNA-binding protein containing a Zn-ribbon domain General function prediction only 15897755 Nonpathogen - hypothetical protein SSO0858 3 None None None 15897646 Nonpathogen rps3AE 30S ribosomal protein S3Ae SSO0746 34 COG1890 RPS1A, Ribosomal protein S3AE Translation, ribosomal structure and biogenesis 15898279 Nonpathogen - hypothetical protein SSO1441 4 COG1688 COG1688, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15897323 Common - hypothetical protein SSO0391 48 COG1444 COG1444, Predicted P-loop ATPase fused to an acetyltransferase General function prediction only 15898549 Nonpathogen - First ORF in transposon ISC1395 SSO1748 1 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899169 Common imp3 Inositol monophosphosphatase, putative (imp3) SSO2418 141 COG0483 SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family Carbohydrate transport and metabolism 15897387 Common - hypothetical protein SSO0456 34 COG0212 COG0212, 5-formyltetrahydrofolate cyclo-ligase Coenzyme metabolism 15898371 Nonpathogen - hypothetical protein SSO1550 1 None None None 15898170 Nonpathogen - hypothetical protein SSO1329 5 None None None 15897829 Common - hypothetical protein SSO0950 21 COG2971 COG2971, Predicted N-acetylglucosamine kinase Carbohydrate transport and metabolism 15898590 Common - Second ORF in transposon ISC1229 SSO1791 18 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897483 Nonpathogen atpE ATP synthase subunit E (atpE) SSO0561 3 COG1390 NtpE, Archaeal/vacuolar-type H+-ATPase subunit E Energy production and conversion 15899612 Nonpathogen - First ORF in transposon ISC774 SSO2898 1 COG3677 COG3677, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898936 Nonpathogen - hypothetical protein SSO2155 2 None None None 15899390 Nonpathogen - hypothetical protein SSO2667 2 None None None 15899537 Common fdhD FDHD protein homolog (fdhD) SSO2821 137 COG1526 FdhD, Uncharacterized protein required for formate dehydrogenase activity Energy production and conversion 15899404 Nonpathogen - hypothetical protein SSO2681 1 None None None 15897802 Nonpathogen - hypothetical protein SSO0915 6 COG1066 Sms, Predicted ATP-dependent serine protease Posttranslational modification, protein turnover, chaperones 15898200 Nonpathogen - hypothetical protein SSO1360 2 None None None 15899878 Nonpathogen - hypothetical protein SSO3175 2 None None None 15898072 Common adh-3 Alcohol dehydrogenase (Zn containing) (adh-3) SSO1220 210 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15898474 Common - hypothetical protein SSO1656 39 COG4279 COG4279, Uncharacterized conserved protein Function unknown 15899802 Common - hypothetical protein SSO3091 7 COG2259 COG2259, Predicted membrane protein Function unknown 15898658 Common - hypothetical protein SSO1866 126 COG2151 PaaD, Predicted metal-sulfur cluster biosynthetic enzyme General function prediction only 15899240 Common adh-9 Alcohol dehydrogenase (Zn containing) (adh-9) SSO2501 209 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15898654 Common - hypothetical protein SSO1861 78 COG0467 RAD55, RecA-superfamily ATPases implicated in signal transduction Signal transduction mechanisms 15898127 Nonpathogen - First ORF in transposon ISC1212 SSO7578 1 None None None 15898425 Nonpathogen - hypothetical protein SSO8472 1 None None None 15897523 Common - hypothetical protein SSO0607 53 COG2095 MarC, Multiple antibiotic transporter Intracellular trafficking and secretion 15899162 Nonpathogen - hypothetical protein SSO2409 2 None None None 15899779 Common - Partial transposase in ISC1190 SSO3075 6 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899202 Common - hypothetical protein SSO2458 22 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 15898024 Common - Maltose ABC transporter SSO1171 70 COG2182 MalE, Maltose-binding periplasmic proteins/domains Carbohydrate transport and metabolism 15898653 Common uppP undecaprenyl pyrophosphate phosphatase SSO1860 114 COG1968 BacA, Uncharacterized bacitracin resistance protein Defense mechanisms 15899251 Common - hypothetical protein SSO2515 118 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15897584 Common mobA Molybdopterin-guanine dinucleotide biosynthesis protein A (mobA) SSO0677 34 COG0746 MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A Coenzyme metabolism 15899155 Nonpathogen - Transcription regulator, putative SSO10340 2 None None None 15899264 Nonpathogen - hypothetical protein SSO2529 10 None None None 15897566 Common ubiA prenyltransferase SSO0656 165 COG0109 CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) Posttranslational modification, protein turnover, chaperones 15897002 Nonpathogen - hypothetical protein SSO0032 2 None None None 15897474 Common dpo1 DNA polymerase I SSO0552 62 COG0417 PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair 15899859 Common - Second ORF in transposon ISC1778 SSO3153 67 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897032 Common - hypothetical protein SSO0066 69 COG1355 COG1355, Predicted dioxygenase General function prediction only 15899389 Nonpathogen - hypothetical protein SSO2666 1 None None None 15898488 Nonpathogen - hypothetical protein SSO1673 3 None None None 15898065 Nonpathogen - Hydrogenase formation/expression factor related protein SSO1213 2 COG0680 HyaD, Ni,Fe-hydrogenase maturation factor Energy production and conversion 15898114 Common - hypothetical protein SSO1272 17 COG3589 COG3589, Uncharacterized conserved protein Function unknown 15898227 Nonpathogen - Second part of one of two inversely orientated ORFs in a partial ISC1043 SSO7896 1 None None None 15898007 Common - hypothetical protein SSO1151 167 COG0312 TldD, Predicted Zn-dependent proteases and their inactivated homologs General function prediction only 15899397 Common - hypothetical protein SSO2674 17 COG4354 COG4354, Predicted bile acid beta-glucosidase Carbohydrate transport and metabolism 15897320 Common - LPS biosynthesis protein, putative SSO0388 84 COG0438 RfaG, Glycosyltransferase Cell envelope biogenesis, outer membrane 15899461 Common - hypothetical protein SSO2746 11 None None None 15899728 Common xylS Alpha-xylosidase (xylS) SSO3022 82 COG1501 COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases Carbohydrate transport and metabolism 15899298 Nonpathogen - Transposase ISC1234 SSO2567 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15899294 Common - Nitroreductase, bluB homolog, putative SSO2560 103 COG0778 NfnB, Nitroreductase Energy production and conversion 15897329 Common - hypothetical protein SSO0395 26 COG0433 COG0433, Predicted ATPase General function prediction only 15899238 Common nrdB ribonucleotide-diphosphate reductase subunit beta SSO2498 27 COG0208 NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism 15899659 Nonpathogen - hypothetical protein SSO2952 4 COG1669 COG1669, Predicted nucleotidyltransferases General function prediction only 15899312 Nonpathogen - hypothetical protein SSO2582 1 None None None 15899129 Nonpathogen - hypothetical protein SSO2373 34 COG1094 COG1094, Predicted RNA-binding protein (contains KH domains) General function prediction only 15897983 Common pdhD-1 Dihydrolipoamide dehydrogenase (pdhD-1) SSO1123 247 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15898272 Nonpathogen - hypothetical protein SSO1433 5 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 15899287 Common - hypothetical protein SSO2553 8 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 15898734 Nonpathogen - hypothetical protein SSO1933 1 None None None 15899564 Common - ABC transporter, permease (glucose) SSO2849 152 COG0395 UgpE, ABC-type sugar transport system, permease component Carbohydrate transport and metabolism 15898928 Nonpathogen - Transposase ISC1439 SSO2145 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15896994 Nonpathogen - hypothetical protein SSO0022 2 None None None 15899904 Common - hypothetical protein SSO3202 157 COG0038 EriC, Chloride channel protein EriC Inorganic ion transport and metabolism 15898161 Common - hypothetical protein SSO1318 4 COG1277 NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component General function prediction only 15898826 Nonpathogen - hypothetical protein SSO2035 5 COG2807 CynX, Cyanate permease Inorganic ion transport and metabolism 15897798 Common - hypothetical protein SSO0911 8 COG1196 Smc, Chromosome segregation ATPases Cell division and chromosome partitioning 15898741 Common ilvC-3 Ketol-acid reductoisomerase (ilvC-3) SSO1942 210 COG0059 IlvC, Ketol-acid reductoisomerase Amino acid transport and metabolism / Coenzyme metabolism 15898166 Common thiC-1 thiamine biosynthesis protein ThiC SSO1324 190 COG0422 ThiC, Thiamine biosynthesis protein ThiC Coenzyme metabolism 15897595 Common - hypothetical protein SSO0690 50 COG1371 COG1371, Uncharacterized conserved protein Function unknown 15898308 Nonpathogen - Second ORF in transposon ISC1212 SSO1478 1 None None None 15898168 Nonpathogen - hypothetical protein SSO1327 8 COG0433 COG0433, Predicted ATPase General function prediction only 15898661 Nonpathogen - hypothetical protein SSO9092 4 None None None 15899542 Nonpathogen - hypothetical protein SSO2827 3 COG3432 COG3432, Predicted transcriptional regulator Transcription 15898641 Common pqqE-5 Coenzyme PQQ synthesis protein E (pqqE-5) SSO1840 100 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15897074 Nonpathogen - hypothetical protein SSO0115 7 COG1475 Spo0J, Predicted transcriptional regulators Transcription 15899306 Common zfx-1 Ferredoxin (zfx-1) SSO2574 19 COG1143 NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Energy production and conversion 15899222 Nonpathogen - hypothetical protein SSO2481 1 None None None 15899319 Nonpathogen - hypothetical protein SSO2590 3 None None None 15897512 Common hisB Imidazoleglycerol-phosphate dehydratase (hisB) SSO0596 213 COG0131 HisB, Imidazoleglycerol-phosphate dehydratase Amino acid transport and metabolism 15897355 Common - hypothetical protein SSO0426 24 COG1378 COG1378, Predicted transcriptional regulators Transcription 15898295 Nonpathogen - hypothetical protein SSO1462 3 None None None 15898426 Nonpathogen - hypothetical protein SSO1608 1 COG4243 COG4243, Predicted membrane protein Function unknown 15899649 Common - hypothetical protein SSO2940 58 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15898780 Nonpathogen - hypothetical protein SSO1985 1 None None None 15899650 Common hpcE-3 2-hydroxyhepta-2 ,4-diene-1,7-dioate isomerase (hpcE-3) SSO2941 132 COG0179 MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) Secondary metabolites biosynthesis, transport, and catabolism 15899369 Common glpC Glycerol-3-phosphate dehydrogenase chain C (anaerobic) (glpC) SSO2643 134 COG0247 GlpC, Fe-S oxidoreductase Energy production and conversion 15898979 Common - hypothetical protein SSO2204 107 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 15898630 Common - Second ORF in transposon ISC1778 SSO1829 63 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899339 Common bcp-4 Peroxiredoxin, bacterioferritin comigratory protein homolog (bcp-4) SSO2613 232 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 15897668 Common - Proteasome subunit SSO0766 49 COG0638 PRE1, 20S proteasome, alpha and beta subunits Posttranslational modification, protein turnover, chaperones 15899575 Common acsA-9 acetyl-CoA synthetase SSO2863 213 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15897296 Nonpathogen - hypothetical protein SSO0361 3 COG3642 COG3642, Mn2+-dependent serine/threonine protein kinase Signal transduction mechanisms 15897871 Common - hypothetical protein SSO0995 32 COG3439 COG3439, Uncharacterized conserved protein Function unknown 15898502 Nonpathogen - hypothetical protein SSO1686 14 COG0121 COG0121, Predicted glutamine amidotransferase General function prediction only 15899362 Common cutB-2 Carbon monoxide dehydrogenase, medium chain. (cutB-2) SSO2636 101 COG1319 CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs Energy production and conversion 15898896 Common - hypothetical protein SSO2112 52 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 15899510 Common - hypothetical protein SSO2792 27 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 15899639 Nonpathogen - First ORF in transposon ISC1234 SSO2928 2 None None None 15898943 Common - Dehydrogenase, putative SSO2162 166 COG0277 GlcD, FAD/FMN-containing dehydrogenases Energy production and conversion 15897079 Nonpathogen - hypothetical protein SSO0119 2 COG2064 TadC, Flp pilus assembly protein TadC Cell motility and secretion / Intracellular trafficking and secretion 15899921 Common - hypothetical protein SSO3218 63 COG2971 COG2971, Predicted N-acetylglucosamine kinase Carbohydrate transport and metabolism 15898041 Common - Transposase ISC1316 SSO1187 76 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897465 Common - Transposase ISC1173 SSO0541 18 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15898433 Common - hypothetical protein SSO1613 41 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 15899751 Common - ABC transporter, ATP binding protein SSO3046 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898731 Common gdhA-3 NAD specific glutamate dehydrogenase (gdhA-3) SSO1930 180 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 15897657 Nonpathogen rpl37e 50S ribosomal protein L37e SSO6453 29 COG2126 RPL37A, Ribosomal protein L37E Translation, ribosomal structure and biogenesis 15898980 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase SSO2205 229 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15898613 Nonpathogen - hypothetical protein SSO1812 2 COG4309 COG4309, Uncharacterized conserved protein Function unknown 15899653 Common - Second ORF in transposon ISC1778 SSO2944 69 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899042 Common - DNA polymerase phage SPO1 N-terminal domain homolog SSO2275 153 COG1573 COG1573, Uracil-DNA glycosylase DNA replication, recombination, and repair 15898916 Common - Transposase ISC1078 SSO2132 35 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898411 Common - Partial transposase ISC1225 SSO1598 147 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15897040 Common rps4p 30S ribosomal protein S4 SSO0073 154 COG0522 RpsD, Ribosomal protein S4 and related proteins Translation, ribosomal structure and biogenesis 15897426 Nonpathogen - hypothetical protein SSO0502 3 None None None 15897500 Nonpathogen - hypothetical protein SSO0582 4 None None None 15898449 Common pqqE-2 Coenzyme PQQ synthesis protein E (pqqE-2) SSO1631 130 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15898642 Common gapN-2 Glyceraldehyde-3-phosphate dehydrogenase, NADP dependent (gapN-2) SSO1842 221 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15897880 Common - hypothetical protein SSO1005 14 None None None 15897259 Nonpathogen - hypothetical protein SSO0318 2 COG2014 COG2014, Uncharacterized conserved protein Function unknown 15898600 Nonpathogen - Transposase ISC1234 SSO1801 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15898847 Nonpathogen - hypothetical protein SSO2058 12 COG3413 COG3413, Predicted DNA binding protein General function prediction only 15898891 Nonpathogen - hypothetical protein SSO2107 1 None None None 15897554 Common carB carbamoyl phosphate synthase large subunit SSO0641 237 COG0458 CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) Amino acid transport and metabolism / Nucleotide transport and metabolism 15899553 Common - ABC transporter, permease (branched chain amino acid) SSO2839 31 COG0559 LivH, Branched-chain amino acid ABC-type transport system, permease components Amino acid transport and metabolism 15899881 Nonpathogen - hypothetical protein SSO3178 1 None None None 15898728 Common - First ORF in partial transposon ISC1913 SSO1927 22 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897155 Nonpathogen - hypothetical protein SSO0205 8 COG4755 COG4755, Uncharacterized protein conserved in archaea Function unknown 15898627 Nonpathogen - Second ORF in transposon ISC1212 SSO1825 1 None None None 15898017 Common - Multidrug resistance protein SSO1162 224 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897866 Common - Sugar phosphate nucleotydyl transferase SSO0989 231 COG1208 GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis 15898493 Common - Transposase ISC1250 SSO1679 8 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899741 Common - hypothetical protein SSO3034 7 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15899929 Common - hypothetical protein SSO3230 173 COG2524 COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains Transcription 15897118 Nonpathogen - hypothetical protein SSO0168 2 None None None 15898787 Nonpathogen - hypothetical protein SSO1992 5 COG1769 COG1769, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15899931 Common guaA GMP synthase, PP-ATPase domain (guaA) SSO3232 238 COG0519 GuaA, GMP synthase, PP-ATPase domain/subunit Nucleotide transport and metabolism 15897531 Common pyrE orotate phosphoribosyltransferase SSO0615 222 COG0461 PyrE, Orotate phosphoribosyltransferase Nucleotide transport and metabolism 15898578 Common rfbB-3 dTDP-Glucose 4,6-dehydratase (rfbB-3) SSO1781 218 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 15897952 Nonpathogen - hypothetical protein SSO1087 12 COG2419 COG2419, Uncharacterized conserved protein Function unknown 15898264 Nonpathogen - hypothetical protein SSO1425 18 COG1337 COG1337, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898542 Common - hypothetical protein SSO1740 6 None None None 15897574 Common NuoB NADH dehydrogenase subunit B (NuoB) SSO0665 192 COG0377 NuoB, NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases Energy production and conversion 15897551 Common argG Argininosuccinate synthetase (argG) SSO0638 216 COG0137 ArgG, Argininosuccinate synthase Amino acid transport and metabolism 15897578 Nonpathogen - hypothetical protein SSO0670 2 None None None 15898620 Common cysA-2 Thiosulfate sulfurtransferase (cysA-2) SSO1817 146 COG2897 SseA, Rhodanese-related sulfurtransferase Inorganic ion transport and metabolism 15899229 Nonpathogen soxE-like Quinol oxidase-2, sulfocyanin (blue copper protein), putative (soxE-like) SSO2488 3 COG3889 COG3889, Predicted solute binding protein General function prediction only 15897453 Nonpathogen gap glyceraldehyde-3-phosphate dehydrogenase SSO0528 35 COG0057 GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase Carbohydrate transport and metabolism 15899331 Common - ABC transporter, ABC1 family, putative SSO2605 185 COG0661 AarF, Predicted unusual protein kinase General function prediction only 15899427 Nonpathogen - hypothetical protein SSO2711 1 COG0727 COG0727, Predicted Fe-S-cluster oxidoreductase General function prediction only 15899707 Common hdb-3 3-hydroxyacyl-CoA dehydrogenase (hdb-3) SSO2996 160 COG1250 FadB, 3-hydroxyacyl-CoA dehydrogenase Lipid metabolism 15898982 Nonpathogen - hypothetical protein SSO2207 2 None None None 15899640 Nonpathogen - Second ORF in transposon ISC1234 SSO2929 2 COG1270 CbiB, Cobalamin biosynthesis protein CobD/CbiB Coenzyme metabolism 15898106 Common - Second ORF in transposon ISC1078 SSO1263 24 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897449 Nonpathogen - First ORF in a partial transposon ISC1439 SSO0525 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897848 Common top6A DNA topoisomerase VI subunit A SSO0969 34 COG1697 COG1697, DNA topoisomerase VI, subunit A DNA replication, recombination, and repair 15897223 Nonpathogen - tRNA-splicing endonuclease subunit beta SSO0281 5 COG1676 SEN2, tRNA splicing endonuclease Translation, ribosomal structure and biogenesis 15899421 Common - Permease, multidrug efflux SSO2704 177 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897442 Nonpathogen - hypothetical protein SSO0519 1 None None None 15897234 Nonpathogen rpoM-1 putative DNA-directed RNA polymerase subunit M SSO0291 33 COG1594 RPB9, DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS Transcription 15897704 Common - Transposase ISC1476 SSO0801 20 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897635 Common - exosome complex RNA-binding protein Rrp42 SSO0732 120 COG2123 COG2123, RNase PH-related exoribonuclease Translation, ribosomal structure and biogenesis 15897830 Nonpathogen tflD transcription factor SSO0951 34 COG2101 SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB Transcription 15897061 Common pheS phenylalanyl-tRNA synthetase subunit alpha SSO0100 249 COG0016 PheS, Phenylalanyl-tRNA synthetase alpha subunit Translation, ribosomal structure and biogenesis 15898562 Nonpathogen - hypothetical protein SSO1764 5 COG5592 COG5592, Uncharacterized conserved protein Function unknown 15897655 Common ahcY S-adenosyl-L-homocysteine hydrolase SSO0755 178 COG0499 SAM1, S-adenosylhomocysteine hydrolase Coenzyme metabolism 15897022 Common - ABC transporter, ATP binding protein SSO0053 249 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15898940 Common - 2-haloalkanoic acid dehalogenase SSO2159 60 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15897230 Common - hypothetical protein SSO0286 37 COG1980 COG1980, Archaeal fructose 1,6-bisphosphatase Carbohydrate transport and metabolism 15898798 Nonpathogen - hypothetical protein SSO2005 3 COG1857 COG1857, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15898704 Common gdhA-2 NAD specific glutamate dehydrogenase (gdhA-2) SSO1907 181 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 15897274 Nonpathogen - hypothetical protein SSO0337 4 None None None 15899608 Common - Copper-transporting ATPase SSO2896 231 COG2217 ZntA, Cation transport ATPase Inorganic ion transport and metabolism 15898622 Nonpathogen - hypothetical protein SSO1820 1 None None None 161777476 Nonpathogen rpl18p 50S ribosomal protein L18P SSO0699 34 COG0256 RplR, Ribosomal protein L18 Translation, ribosomal structure and biogenesis 15899056 Common fabG 3-ketoacyl-(acyl-carrier-protein) reductase SSO2289 238 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15897991 Common hdrC-2 Heterodisulfide reductase subunit C (hdrC-2) SSO1134 39 COG1150 HdrC, Heterodisulfide reductase, subunit C Energy production and conversion 15899935 Common - Sorbitol dehydrogenase SSO3237 208 COG1063 Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases Amino acid transport and metabolism / General function prediction only 15898183 Common acsA-2 Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2) SSO1342 211 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15899233 Nonpathogen - hypothetical protein SSO2492 2 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15897132 Common - delta-aminolevulinic acid dehydratase SSO0181 220 COG0113 HemB, Delta-aminolevulinic acid dehydratase Coenzyme metabolism 15898767 Nonpathogen - hypothetical protein SSO1970 6 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899499 Nonpathogen - hypothetical protein SSO2783 3 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898821 Nonpathogen - hypothetical protein SSO2029 2 None None None 15897949 Common gctA Glutaconate CoA-transferase, subunit A (gctA) SSO1083 74 COG1788 AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit Lipid metabolism 15896988 Common - Transcription regulator (exsB) related protein SSO0016 156 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 15898497 Nonpathogen - hypothetical protein SSO1683 1 COG1662 InsB, Transposase and inactivated derivatives, IS1 family DNA replication, recombination, and repair 15897948 Common - Transcriptional regulator, marR family, putative SSO1082 4 COG1846 MarR, Transcriptional regulators Transcription 15898506 Nonpathogen - hypothetical protein SSO1691 1 None None None 15898266 Nonpathogen - hypothetical protein SSO1427 5 COG1337 COG1337, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15899663 Nonpathogen - Third ORF in transposon ISC1212 SSO11549 1 None None None 15897116 Common galE-2 UDP-glucose 4-epimerase (galE-2) SSO0166 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15897677 Nonpathogen - hypothetical protein SSO0775 1 None None None 15898647 Nonpathogen - Second ORF in transposon ISC1217 SSO1851 1 None None None 15897194 Common radA DNA repair and recombination protein RadA SSO0250 243 COG0468 RecA, RecA/RadA recombinase DNA replication, recombination, and repair 15899354 Nonpathogen - hypothetical protein SSO2628 3 COG2044 COG2044, Predicted peroxiredoxins General function prediction only 15897906 Nonpathogen - tRNA CCA-pyrophosphorylase SSO1039 34 COG1746 CCA1, tRNA nucleotidyltransferase (CCA-adding enzyme) Translation, ribosomal structure and biogenesis 15898990 Common nifS NifS protein homolog (nifS) SSO2215 232 COG0520 CsdB, Selenocysteine lyase Amino acid transport and metabolism 15899799 Nonpathogen - hypothetical protein SSO3088 3 COG0425 SirA, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15898770 Common - hypothetical protein SSO1974 39 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897103 Common hpS-1 D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hpS-1) SSO0151 47 COG0794 GutQ, Predicted sugar phosphate isomerase involved in capsule formation Cell envelope biogenesis, outer membrane 15897509 Common hisC Histidinol-phosphate aminotransferase (hisC) SSO0592 235 COG0079 HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase Amino acid transport and metabolism 15899208 Common - Biotin carboxyl carrier protein of propionyl-CoA carboxylase beta subunit SSO2464 182 COG0511 AccB, Biotin carboxyl carrier protein Lipid metabolism 15899454 Common abfD-2 4-hydroxybutyryl-CoA dehydratase (abfD-2) SSO2738 50 COG2368 COG2368, Aromatic ring hydroxylase Secondary metabolites biosynthesis, transport, and catabolism 15898319 Common - Transposase ISC1058 SSO1487 17 COG5558 COG5558, Transposase DNA replication, recombination, and repair 15899582 Common - hypothetical protein SSO2870 41 COG0456 RimI, Acetyltransferases General function prediction only 15899761 Common - Transposase ISC1058 SSO3056 19 None None None 15899831 Common - hypothetical protein SSO3125 94 COG1078 COG1078, HD superfamily phosphohydrolases General function prediction only 15899024 Common - hypothetical protein SSO2251 102 COG0433 COG0433, Predicted ATPase General function prediction only 15899326 Common pcm L-isoaspartyl protein carboxyl methyltransferase (pcm) SSO2599 153 COG2518 Pcm, Protein-L-isoaspartate carboxylmethyltransferase Posttranslational modification, protein turnover, chaperones 15898989 Nonpathogen - hypothetical protein SSO2214 2 None None None 15897589 Common - hypothetical protein SSO0683 122 COG0067 GltB, Glutamate synthase domain 1 Amino acid transport and metabolism 15897366 Common - putative thiazole biosynthetic enzyme SSO0436 37 COG1635 THI4, Flavoprotein involved in thiazole biosynthesis Coenzyme metabolism 15898522 Nonpathogen - hypothetical protein SSO1712 3 None None None 15899106 Common ansA-like Asparinase, putative (ansA-like) SSO2350 84 COG1446 COG1446, Asparaginase Amino acid transport and metabolism 15899347 Common paaI Phenylacetic acid degradation paaI protein homolog (paaI) SSO2622 57 COG2050 PaaI, Uncharacterized protein, possibly involved in aromatic compounds catabolism Secondary metabolites biosynthesis, transport, and catabolism 15897303 Common trxA-1 Thioredoxin (trxA-1) SSO0368 233 COG3118 COG3118, Thioredoxin domain-containing protein Posttranslational modification, protein turnover, chaperones 15899767 Nonpathogen - hypothetical protein SSO11870 3 COG1957 URH1, Inosine-uridine nucleoside N-ribohydrolase Nucleotide transport and metabolism 15897502 Nonpathogen - hypothetical protein SSO0584 5 COG0644 FixC, Dehydrogenases (flavoproteins) Energy production and conversion 15899186 Common - hypothetical protein SSO2438 38 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15897163 Common rps10p 30S ribosomal protein S10P SSO0215 236 COG0051 RpsJ, Ribosomal protein S10 Translation, ribosomal structure and biogenesis 15899724 Common - hypothetical protein SSO3017 18 None None None 15899340 Common dppF-3 Dipeptide ABC transporter ATP binding protein (dppF-3) SSO2615 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15897582 Common mobB Molybdopterin-guanine dinucleotide biosynthesis protein B (mobB) SSO0675 83 COG1763 MobB, Molybdopterin-guanine dinucleotide biosynthesis protein Coenzyme metabolism 15897464 Nonpathogen - hypothetical protein SSO0540 1 None None None 15898585 Nonpathogen - hypothetical protein SSO1786 8 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897063 Common - Esterase, tropinesterase related protein SSO0102 165 COG0596 MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) General function prediction only 15899039 Nonpathogen - ORF in partial transposon ISC774 SSO10122 1 None None None 15898603 Nonpathogen - First ORF in transposon ISC1212 SSO1803 1 None None None 15899838 Common - hypothetical protein SSO3132 214 COG0491 GloB, Zn-dependent hydrolases, including glyoxylases General function prediction only 15898591 Common - Second ORF in transposon ISC1048 SSO1793 22 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898809 Common - Ring oxydation complex/ phenylacetic acid degradation related protein SSO2018 51 COG3396 COG3396, Uncharacterized conserved protein Function unknown 15899895 Common - Formate dehydrogenase (Amino end fragment) SSO3191 68 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 15897185 Common purB Adenylosuccinate lyase (adenylosuccinase)(ASL) (purB) SSO0240 241 COG0015 PurB, Adenylosuccinate lyase Nucleotide transport and metabolism 15897936 Nonpathogen - hypothetical protein SSO1068 1 None None None 15898026 Nonpathogen - Amino acid permease related protein SSO1173 7 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15899313 Common sqdB Sulfolipid biosynthesis protein (sqdB) SSO2583 128 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15899481 Common trxB-2 Thioredoxin reductase (trxB-2) SSO2765 246 COG0492 TrxB, Thioredoxin reductase Posttranslational modification, protein turnover, chaperones 15899081 Nonpathogen - Flagellin, putative SSO2323 3 COG1681 FlaB, Archaeal flagellins Cell motility and secretion 15899813 Common - Thermostable carboxypeptidase 1 SSO3105 82 COG2317 COG2317, Zn-dependent carboxypeptidase Amino acid transport and metabolism 15899439 Nonpathogen - Partial transposase ISC1225 SSO10982 1 None None None 15899413 Common apeH-3 Acylaminoacyl-peptidase, putative (apeH-3) SSO2693 108 COG1506 DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases Amino acid transport and metabolism 15897498 Common - hypothetical protein SSO0580 8 COG4996 COG4996, Predicted phosphatase General function prediction only 15898335 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO1508 1 None None None 15899431 Common - Permease, multidrug resistance protein SSO2716 202 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899804 Common - ABC transporter, ATP binding protein, putative SSO3093 248 COG1131 CcmA, ABC-type multidrug transport system, ATPase component Defense mechanisms 15898888 Nonpathogen - Fourth ORF in transposon ISC1225 SSO2104 1 None None None 15898212 Nonpathogen - hypothetical protein SSO1373 1 None None None 15899530 Nonpathogen - hypothetical protein SSO2814 2 None None None 15898471 Common - Helicase of the snf2/rad54 family (amino end fragment), hypothetical SSO1653 135 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 15898955 Common - hypothetical protein SSO2175 49 COG2431 COG2431, Predicted membrane protein Function unknown 15897013 Nonpathogen - First ORF in transposon ISC1234 SSO0043 2 None None None 15897174 Nonpathogen rpoH DNA-directed RNA polymerase subunit H SSO5468 33 COG2012 RPB5, DNA-directed RNA polymerase, subunit H, RpoH/RPB5 Transcription 15898485 Common huyA-like N-methylhydantoinase A related protein (huyA-like) SSO1668 114 COG0145 HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism 15897963 Nonpathogen - Transcriptional regulator, putative SSO1101 3 COG3355 COG3355, Predicted transcriptional regulator Transcription 15897362 Common - O-sialoglycoprotein endopeptidase SSO0433 40 COG3642 COG3642, Mn2+-dependent serine/threonine protein kinase Signal transduction mechanisms 15897312 Common ocd-like1 Ornithine cyclodeaminase related protein (ocd-like1) SSO0378 83 COG2423 COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog Amino acid transport and metabolism 15897179 Common upp uracil phosphoribosyltransferase SSO0231 164 COG0035 Upp, Uracil phosphoribosyltransferase Nucleotide transport and metabolism 15898515 Common - First ORF in transposon ISC1229 SSO1704 2 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897286 Nonpathogen eiF6 translation initiation factor IF-6 SSO0351 33 COG1976 TIF6, Translation initiation factor 6 (eIF-6) Translation, ribosomal structure and biogenesis 15897739 Common - Transposase ISC1476 SSO0842 20 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899395 Common - ABC transporter, ATP binding protein SSO2672 249 COG4608 AppF, ABC-type oligopeptide transport system, ATPase component Amino acid transport and metabolism 15899463 Nonpathogen - hypothetical protein SSO2748 2 None None None 15898800 Nonpathogen - Second ORF in transposon ISC1048 SSO2007 1 None None None 15897924 Nonpathogen - hypothetical protein SSO1055 2 None None None 15898860 Common - hypothetical protein SSO2073 35 COG1378 COG1378, Predicted transcriptional regulators Transcription 15897757 Common thsA Thermosome alpha subunit (thermophilic factor 55) (ring complex alpha subunit)(chaperonin alpha subunit) (thsA) SSO0862 247 COG0459 GroL, Chaperonin GroEL (HSP60 family) Posttranslational modification, protein turnover, chaperones 15897020 Common paaF-1 Enoyl CoA hydratase (paaF-1) SSO0050 143 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15898306 Common - Transposase, putative SSO1474 71 COG1943 COG1943, Transposase and inactivated derivatives DNA replication, recombination, and repair 15896973 Nonpathogen - hypothetical protein SSO0001 5 COG1468 COG1468, RecB family exonuclease DNA replication, recombination, and repair 15899285 Common - Serine protease, subtilase family, putative SSO2551 24 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 15898172 Nonpathogen - hypothetical protein SSO3257 9 COG1672 COG1672, Predicted ATPase (AAA+ superfamily) General function prediction only 15898063 Nonpathogen - hypothetical protein SSO1210 1 COG4026 COG4026, Uncharacterized protein containing TOPRIM domain, potential nuclease General function prediction only 15898101 Common - Mandelate racemase /muconate lactonizing enzyme related protein (MR/MLE) SSO1258 100 COG4948 COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily Cell envelope biogenesis, outer membrane / General function prediction only 15897804 Common - glycine dehydrogenase subunit 2 SSO0917 173 COG1003 GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain Amino acid transport and metabolism 15897123 Nonpathogen - transcription elongation factor NusA-like protein SSO0172 12 COG0195 NusA, Transcription elongation factor Transcription 15899539 Common fdhF-2 Formate dehydrogenase Alpha subunit (fdhF-2) SSO2824 216 COG3383 COG3383, Uncharacterized anaerobic dehydrogenase General function prediction only 15897613 Nonpathogen rpl24p 50S ribosomal protein L24P SSO0707 36 COG0198 RplX, Ribosomal protein L24 Translation, ribosomal structure and biogenesis 15899376 Common - Transcriptional regulatory protein (Lrp/AsnC family) SSO2652 9 COG1522 Lrp, Transcriptional regulators Transcription 15897042 Nonpathogen - hypothetical protein SSO0076 27 COG1973 HypE, Hydrogenase maturation factor Posttranslational modification, protein turnover, chaperones 15897094 Nonpathogen - hypothetical protein SSO0138 2 COG5397 COG5397, Uncharacterized conserved protein Function unknown 15898246 Nonpathogen - hypothetical protein SSO1406 5 COG5551 COG5551, Uncharacterized conserved protein Function unknown 15897004 Common soj SOJ protein (soj) SSO0034 226 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15898998 Nonpathogen - hypothetical protein SSO2224 27 COG2090 COG2090, Uncharacterized protein conserved in archaea Function unknown 15899402 Nonpathogen - hypothetical protein SSO2679 19 COG1955 FlaJ, Archaeal flagella assembly protein J Cell motility and secretion / Intracellular trafficking and secretion 15898811 Common acsA-4 Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment (acsA-4) SSO2020 203 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15899845 Nonpathogen - hypothetical protein SSO3142 2 None None None 15899064 Common cbiF Cobalamin biosynthesis precorrin-3 methylase, putative (cbiF) SSO2299 203 COG2875 CobM, Precorrin-4 methylase Coenzyme metabolism 15899477 Common acd-5 Acyl-CoA dehydrogenase (acd-5) SSO2761 157 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15897018 Nonpathogen - Transcriptional regulator, putative SSO0048 3 COG3355 COG3355, Predicted transcriptional regulator Transcription 15897682 Common tmK-1 Thymidylate kinase (tmK-1) SSO0780 225 COG0125 Tmk, Thymidylate kinase Nucleotide transport and metabolism 15899133 Common - hypothetical protein SSO2380 233 COG0621 MiaB, 2-methylthioadenine synthetase Translation, ribosomal structure and biogenesis 15899173 Common gpT-2 Purine phosphoribosyltransferase (gpT-2) SSO2424 117 COG2236 COG2236, Predicted phosphoribosyltransferases General function prediction only 15897384 Nonpathogen - hypothetical protein SSO0454 3 COG2390 DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain Transcription 15899088 Nonpathogen - First ORF in transposon ISC1058 SSO10228 1 None None None 15898036 Common - Second ORF in transposon ISC1778 SSO1182 58 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899675 Common - Na(+)/H(+) antiporter, putative SSO2965 13 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 15899467 Nonpathogen - hypothetical protein SSO2752 2 None None None 15898717 Nonpathogen - First ORF in transposon ISC1395 SSO1919 1 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898355 Common acoX Acetoin catabolism protein X homolog (acoX) SSO1527 17 COG3199 COG3199, Uncharacterized conserved protein Function unknown 15899526 Common - Hydrolase, acetamydase/formamidase related, putative SSO2810 66 COG2421 COG2421, Predicted acetamidase/formamidase Energy production and conversion 15898343 Common - hypothetical protein SSO8276 11 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897748 Nonpathogen - hypothetical protein SSO0849 1 None None None 15898949 Common - hypothetical protein SSO2169 28 COG3253 COG3253, Uncharacterized conserved protein Function unknown 15898130 Nonpathogen - hypothetical protein SSO1287 1 None None None 15898192 Common - Permease, multidrug efflux SSO1351 179 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899027 Common bcp-3 Peroxiredoxin, bacterioferritin comigratory protein homolog (bcp-3) SSO2255 231 COG1225 Bcp, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 15898816 Common - NADH oxidase SSO2025 178 COG1902 NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family Energy production and conversion 15897141 Common dcd deoxycytidine triphosphate deaminase SSO0190 148 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 15897435 Nonpathogen - Second ORF in transposon ISC1217 SSO0510 1 None None None 15899604 Common - hypothetical protein SSO2891 13 COG2146 {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases Inorganic ion transport and metabolism / General function prediction only 15898464 Common adh-5 Alcohol dehydrogenase (Zn containing) (adh-5) SSO1646 208 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15898374 Nonpathogen - First ORF in transposon ISC1395 SSO8351 1 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898148 Nonpathogen - hypothetical protein SSO1307 6 COG0598 CorA, Mg2+ and Co2+ transporters Inorganic ion transport and metabolism 15898959 Nonpathogen - hypothetical protein SSO2179 2 None None None 15898710 Nonpathogen rpoM-2 DNA-directed RNA polymerase, subunit M (rpoM-2) SSO9221 16 COG1594 RPB9, DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS Transcription 15899473 Common porD-2 Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-2) SSO11071 103 COG1144 COG1144, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit Energy production and conversion 15898960 Common - Peptidase related protein SSO2181 27 COG4934 COG4934, Predicted protease Posttranslational modification, protein turnover, chaperones 15897107 Common argB acetylglutamate kinase SSO0156 213 COG0548 ArgB, Acetylglutamate kinase Amino acid transport and metabolism 15899490 Common zfx-like1 Ferredoxin like protein (zfx-like1) SSO11114 121 COG2440 FixX, Ferredoxin-like protein Energy production and conversion 15898967 Nonpathogen - hypothetical protein SSO2190 1 None None None 15899058 Common - Protein kinase, putative SSO2291 37 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 15899175 Common - Lactoylglutathione lyase (glyoxalase I), putative SSO2426 108 COG0346 GloA, Lactoylglutathione lyase and related lyases Amino acid transport and metabolism 15899808 Nonpathogen - hypothetical protein SSO3099 2 COG3889 COG3889, Predicted solute binding protein General function prediction only 15898413 Common - Transporter/facilitator SSO1600 179 COG0554 GlpK, Glycerol kinase Energy production and conversion 15898461 Nonpathogen - Transposase ISC1439 SSO1642 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15899726 Common lacS Beta-glycosidase (lacS) SSO3019 103 COG2723 BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase Carbohydrate transport and metabolism 15897586 Common trzA N-ethylammeline chlorohydrolase, putative (trzA) SSO0679 160 COG0402 SsnA, Cytosine deaminase and related metal-dependent hydrolases Nucleotide transport and metabolism / General function prediction only 15899913 Nonpathogen - hypothetical protein SSO3212 1 None None None 15898367 Common fabG-3 3-oxoacyl-(acyl carrier protein) reductase (fabG-3) SSO1542 237 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15899017 Common fur Ferric uptake regulation protein (fur) SSO2244 154 COG0735 Fur, Fe2+/Zn2+ uptake regulation proteins Inorganic ion transport and metabolism 15897351 Common - AAA family ATPase SSO0421 249 COG0464 SpoVK, ATPases of the AAA+ class Posttranslational modification, protein turnover, chaperones 15899368 Common rr Rubrerythrin (rr) SSO2642 79 COG1592 COG1592, Rubrerythrin Energy production and conversion 15899296 Nonpathogen - First ORF in transposon ISC1359 SSO2562 3 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897525 Nonpathogen - hypothetical protein SSO0609 2 None None None 15897777 Common trpA tryptophan synthase subunit alpha SSO0889 183 COG0159 TrpA, Tryptophan synthase alpha chain Amino acid transport and metabolism 15897051 Nonpathogen - hypothetical protein SSO0086 12 COG2413 COG2413, Predicted nucleotidyltransferase General function prediction only 15898202 Common - First ORF in transposon ISC1048 SSO1362 28 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899777 Common - hypothetical protein SSO3073 13 COG0428 COG0428, Predicted divalent heavy-metal cations transporter Inorganic ion transport and metabolism 15898116 Common dppB-1 Oligo/dipeptide transport, permease protein (dppB-1) SSO1274 214 COG0601 DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898588 Nonpathogen - hypothetical protein SSO1789 3 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 15898855 Common iorA Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) SSO2067 102 COG4231 COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits Energy production and conversion 15898538 Common rfbB-2 dTDP-Glucose 4,6-dehydratase (rfbB-2) SSO1734 218 COG1088 RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane 15898656 Common - Microsomal dipeptidase SSO1864 102 COG2355 COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog Amino acid transport and metabolism 15897068 Nonpathogen - hypothetical protein SSO0108 3 None None None 15898261 Nonpathogen - hypothetical protein SSO1422 3 COG5551 COG5551, Uncharacterized conserved protein Function unknown 15897160 Nonpathogen - hypothetical protein SSO0212 21 COG1767 CitG, Triphosphoribosyl-dephospho-CoA synthetase Coenzyme metabolism 15898486 Common - hypothetical protein SSO1671 28 COG3535 COG3535, Uncharacterized conserved protein Function unknown 15899754 Common - Dehydrogenase, putative SSO3049 195 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15898818 Nonpathogen - hypothetical protein SSO2026 4 None None None 15899235 Common adh-8 Alcohol dehydrogenase (Zn containing) (adh-8) SSO2494 208 COG1064 AdhP, Zn-dependent alcohol dehydrogenases General function prediction only 15899387 Common fabG-8 3-oxoacyl-(acyl carrier protein) reductase (fabG-8) SSO2664 236 COG1028 FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only 15898229 Nonpathogen - One of two inversely orientated ORFs in ISC1043 SSO1387 2 COG5558 COG5558, Transposase DNA replication, recombination, and repair 15899253 Common est Carboxylesterase (est) SSO2517 138 COG0657 Aes, Esterase/lipase Lipid metabolism 15898023 Common - Sugar transport protein, hypothetical SSO1170 166 COG1175 UgpA, ABC-type sugar transport systems, permease components Carbohydrate transport and metabolism 15897000 Common - hypothetical protein SSO0029 86 COG3448 COG3448, CBS-domain-containing membrane protein Signal transduction mechanisms 15897689 Common - Amino acid specific permease SSO0786 15 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15898031 Common - hypothetical protein SSO1178 44 COG2226 UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis Coenzyme metabolism 15899513 Common - Oxydoreductase, putative SSO2795 77 COG0243 BisC, Anaerobic dehydrogenases, typically selenocysteine-containing Energy production and conversion 15898328 Common - Second ORF in transposon ISC1778 SSO1498 66 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899587 Common acd-6 Acyl-CoA dehydrogenase (acd-6) SSO2877 166 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15897695 Nonpathogen - hypothetical protein SSO0792 1 None None None 15899801 Nonpathogen - hypothetical protein SSO3090 2 None None None 15897981 Common - Glutaredoxin related protein SSO1120 37 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 15898032 Common - hypothetical protein SSO7348 21 None None None 15898092 Nonpathogen - Second ORF in transposon ISC1217 SSO7486 1 None None None 15898899 Nonpathogen - hypothetical protein SSO2115 2 None None None 15899628 Nonpathogen - hypothetical protein SSO2915 2 None None None 15899853 Nonpathogen - First ORF in partial transposon ISC1160 SSO12068 1 None None None 15898347 Nonpathogen - hypothetical protein SSO1520 8 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15897341 Common metE-2 methionine synthase SSO0407 155 COG0620 MetE, Methionine synthase II (cobalamin-independent) Amino acid transport and metabolism 15898674 Common - hypothetical protein SSO1880 7 None None None 15899570 Nonpathogen - hypothetical protein SSO2856 6 None None None 15898697 Common - hypothetical protein SSO1901 66 COG2242 CobL, Precorrin-6B methylase 2 Coenzyme metabolism 15898722 Nonpathogen - hypothetical protein SSO1922 11 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15898325 Nonpathogen - hypothetical protein SSO1495 3 COG2129 COG2129, Predicted phosphoesterases, related to the Icc protein General function prediction only 15898776 Nonpathogen - Partial transposase in ISC1225 SSO9407 1 None None None 15898690 Nonpathogen - hypothetical protein SSO1894 2 None None None 15897113 Common - Undecaprenyl diphosphate synthase SSO0163 242 COG0020 UppS, Undecaprenyl pyrophosphate synthase Lipid metabolism 15899841 Nonpathogen - hypothetical protein SSO3138 2 None None None 15899893 Nonpathogen - hypothetical protein SSO3188 1 COG1414 IclR, Transcriptional regulator Transcription 15899159 Common leuA-3 2-isopropylmalate synthase, putative (leuA-3) SSO2407 213 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 15897972 Nonpathogen - Transcriptional regulator, putative SSO1110 4 COG3355 COG3355, Predicted transcriptional regulator Transcription 15897243 Common tkt-1 Transketolase, N-terminal section (tkt-1) SSO0297 225 COG3959 COG3959, Transketolase, N-terminal subunit Carbohydrate transport and metabolism 15898467 Nonpathogen - Transposase ISC1217 SSO1649 1 None None None 15898753 Nonpathogen - hypothetical protein SSO1957 2 None None None 15897726 Nonpathogen - hypothetical protein SSO0826 1 None None None 15899275 Nonpathogen - hypothetical protein SSO2541 2 None None None 15897815 Nonpathogen - hypothetical protein SSO0931 18 COG2522 COG2522, Predicted transcriptional regulator General function prediction only 15898540 Nonpathogen - hypothetical protein SSO1739 3 COG1106 COG1106, Predicted ATPases General function prediction only 15898791 Nonpathogen - hypothetical protein SSO1996 2 None None None 15899869 Nonpathogen - hypothetical protein SSO3164 1 None None None 15899214 Common phrB Deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme). (phrB) SSO2472 131 COG0415 PhrB, Deoxyribodipyrimidine photolyase DNA replication, recombination, and repair 15899053 Nonpathogen - hypothetical protein SSO2286 2 None None None 15897768 Common akH Aspartokinase (akH) SSO0876 236 COG0527 LysC, Aspartokinases Amino acid transport and metabolism 15899105 Nonpathogen - hypothetical protein SSO2349 2 None None None 15897700 Nonpathogen - Orf in partial transposon ISC1913 SSO0797 14 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899735 Common - hypothetical protein SSO3029 15 COG1082 IolE, Sugar phosphate isomerases/epimerases Carbohydrate transport and metabolism 15897543 Common - hypothetical protein SSO6264 11 COG1828 PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component Nucleotide transport and metabolism 15897955 Common - Serine/threonine phosphatase type 1 SSO1090 20 COG0639 ApaH, Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Signal transduction mechanisms 15897357 Common - Protein L-isoaspartate methyltransferase SSO0427 63 COG2519 GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases Translation, ribosomal structure and biogenesis 15897918 Nonpathogen rps27e 30S ribosomal protein S27e SSO7114 33 COG2051 RPS27A, Ribosomal protein S27E Translation, ribosomal structure and biogenesis 15898079 Common tmoA Toluene-4-monooxygenase system protein A. carboxy end fragment (tmoA) SSO1228 15 None None None 15897153 Common hpS-2 D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hpS-2) SSO0202 57 COG0269 SgbH, 3-hexulose-6-phosphate synthase and related proteins Carbohydrate transport and metabolism 15898383 Common pdhD-3 dihydrolipoamide dehydrogenase SSO1565 245 COG1249 Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes Energy production and conversion 15899703 Common - First ORF in transposon ISC1078 SSO2992 10 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897157 Common pmM Phosphomannomutase (pmM) SSO0207 243 COG1109 {ManB}, Phosphomannomutase Carbohydrate transport and metabolism 15898921 Common - hypothetical protein SSO2138 57 COG1695 COG1695, Predicted transcriptional regulators Transcription 15897389 Common mrp MRP protein homolog, conserved ATPase (mrp) SSO0460 229 COG0489 Mrp, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15898504 Nonpathogen - hypothetical protein SSO1689 1 None None None 15899591 Common - hypothetical protein SSO2881 114 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 15899242 Common abfD-1 4-hydroxybutyryl-CoA dehydratase (abfD-1) SSO2503 50 COG2368 COG2368, Aromatic ring hydroxylase Secondary metabolites biosynthesis, transport, and catabolism 15897517 Common hisI Phosphoribosyl-AMP cyclohydrolase (hisI) SSO6227 213 COG0139 HisI, Phosphoribosyl-AMP cyclohydrolase Amino acid transport and metabolism 15898398 Nonpathogen - hypothetical protein SSO1583 2 None None None 15898204 Nonpathogen - hypothetical protein SSO1365 2 None None None 15897200 Nonpathogen - hypothetical protein SSO0256 13 COG1628 COG1628, Uncharacterized conserved protein Function unknown 15899690 Common - Epimerase, putative SSO2981 26 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15898875 Common cutA-2 Carbon monoxide dehydrogenase, large chain (cutA-2) SSO2091 109 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15897878 Common - Sugar ABC transporter SSO1003 249 COG3839 MalK, ABC-type sugar transport systems, ATPase components Carbohydrate transport and metabolism 15899177 Nonpathogen - hypothetical protein SSO2428 29 COG1779 COG1779, C4-type Zn-finger protein General function prediction only 15898157 Nonpathogen - First ORF in transposon ISC1316 SSO1316 12 None None None 15897467 Common - hypothetical protein SSO0544 83 COG0603 COG0603, Predicted PP-loop superfamily ATPase General function prediction only 15898431 Nonpathogen - hypothetical protein SSO1611 2 None None None 15898043 Common - hypothetical protein SSO1189 34 COG2159 COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold General function prediction only 15898150 Common - hypothetical protein SSO1309 91 COG1305 COG1305, Transglutaminase-like enzymes, putative cysteine proteases Amino acid transport and metabolism 15899883 Nonpathogen - hypothetical protein SSO12127 1 None None None 15899937 Common cutA-8 Carbon monoxide dehydrogenase, large chain (cutA-8) SSO3239 109 COG1529 CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs Energy production and conversion 15898611 Common - hypothetical protein SSO1810 176 COG4591 LolE, ABC-type transport system, involved in lipoprotein release, permease component Cell envelope biogenesis, outer membrane 15897576 Nonpathogen - hypothetical protein SSO0668 5 None None None 15897083 Nonpathogen - hypothetical protein SSO0123 2 None None None 15899630 Nonpathogen - Second ORF in transposon ISC1212 SSO2917 1 None None None 15899337 Nonpathogen - hypothetical protein SSO2611 4 None None None 15897431 Nonpathogen - hypothetical protein SSO0506 2 None None None 15898400 Nonpathogen - hypothetical protein SSO1586 2 None None None 15897630 Common EF-2 elongation factor EF-2 SSO0728 249 COG0480 FusA, Translation elongation factors (GTPases) Translation, ribosomal structure and biogenesis 15898945 Nonpathogen - hypothetical protein SSO2164 1 COG5550 COG5550, Predicted aspartyl protease Posttranslational modification, protein turnover, chaperones 15897250 Nonpathogen - hypothetical protein SSO0308 28 COG1685 COG1685, Archaeal shikimate kinase Amino acid transport and metabolism / Coenzyme metabolism 15898159 Nonpathogen - Transposase ISC1439 SSO1317 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15898327 Common - First ORF in transposon ISC1778 SSO1497 18 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15898143 Nonpathogen - Second ORF in transposon ISC1439 SSO1302 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897858 Common rpiA Ribose 5-phosphate isomerase (rpiA) SSO0978 163 COG0120 RpiA, Ribose 5-phosphate isomerase Carbohydrate transport and metabolism 15897661 Common - mRNA 3'-end processing factor, putative SSO0761 163 COG1782 COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain General function prediction only 15898296 Common - Amino acid transporter SSO1463 89 COG1113 AnsP, Gamma-aminobutyrate permease and related permeases Amino acid transport and metabolism 15898785 Common - hypothetical protein SSO1990 21 COG1604 COG1604, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15897455 Common glyA serine hydroxymethyltransferase SSO0530 245 COG0112 GlyA, Glycine/serine hydroxymethyltransferase Amino acid transport and metabolism 15899684 Nonpathogen - hypothetical protein SSO2975 2 None None None 15899948 Nonpathogen - hypothetical protein SSO12252 2 None None None 15899743 Common gusB Beta-glucuronidase (gusB) SSO3036 72 COG3250 LacZ, Beta-galactosidase/beta-glucuronidase Carbohydrate transport and metabolism 15899555 Nonpathogen - Partial transposase ISC1250 SSO2842 1 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897072 Common - ATP-dependent helicase SSO0112 237 COG1201 Lhr, Lhr-like helicases General function prediction only 15897637 Nonpathogen - exosome complex RNA-binding protein Rrp4 SSO0736 24 COG1097 RRP4, RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) Translation, ribosomal structure and biogenesis 15898019 Common - Transposase ISC1250 SSO1164 15 COG3328 COG3328, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898972 Common - Erythrocyte band 7 membrane protein homolog SSO2195 208 COG0330 HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones 15898639 Nonpathogen - hypothetical protein SSO1838 6 None None None 15897248 Common aroE Shikimate 5-dehydrogenase (aroE) SSO0306 211 COG0169 AroE, Shikimate 5-dehydrogenase Amino acid transport and metabolism 15899927 Nonpathogen - hypothetical protein SSO3227 2 None None None 15897007 Nonpathogen - hypothetical protein SSO0037 1 None None None 15897954 Common - hypothetical protein SSO1088 30 COG1716 COG1716, FOG: FHA domain Signal transduction mechanisms 15899632 Nonpathogen - First ORF in transposon ISC1212 SSO2918 1 None None None 15898954 Nonpathogen - Transcription regulator, putative SSO9953 10 COG2345 COG2345, Predicted transcriptional regulator Transcription 15899044 Common - hypothetical protein SSO2277 24 COG1106 COG1106, Predicted ATPases General function prediction only 15897476 Common - Ribosomal protein L11 methyltransferase, putative SSO0554 26 COG2264 PrmA, Ribosomal protein L11 methylase Translation, ribosomal structure and biogenesis 15898729 Nonpathogen - hypothetical protein SSO1928 2 None None None 15898595 Nonpathogen - Partial transposase in ISC1229 SSO1798 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899289 Nonpathogen - hypothetical protein SSO2555 5 None None None 15897403 Common - hypothetical protein SSO0477 64 COG1032 COG1032, Fe-S oxidoreductase Energy production and conversion 15898164 Nonpathogen - hypothetical protein SSO1321 1 None None None 15899310 Nonpathogen - hypothetical protein SSO2579 3 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899886 Common - Serine/threonine protein kinase, putative SSO3182 75 COG0515 SPS1, Serine/threonine protein kinase General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair 15898571 Common - Multidrug-efflux transporter SSO1773 9 COG2211 MelB, Na+/melibiose symporter and related transporters Carbohydrate transport and metabolism 15899623 Common cysI Sulfite reductase hemoprotein beta component (cysI) SSO2909 151 COG0155 CysI, Sulfite reductase, beta subunit (hemoprotein) Inorganic ion transport and metabolism 15898324 Nonpathogen - hypothetical protein SSO1494 1 None None None 15899140 Nonpathogen gspE-3 Type II secretion system protein, virB homolog (gspE-3) SSO2387 30 COG0630 VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis Cell motility and secretion / Intracellular trafficking and secretion 15899540 Nonpathogen - hypothetical protein SSO2825 3 None None None 15898789 Common - hypothetical protein SSO1994 35 COG1106 COG1106, Predicted ATPases General function prediction only 15898317 Common - Transposon ISC1190 SSO1484 91 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897184 Common thiL Thiamine monophosphate kinase, putative (thiL) SSO0237 68 COG0611 ThiL, Thiamine monophosphate kinase Coenzyme metabolism 15897049 Common - hypothetical protein SSO0084 30 COG2108 COG2108, Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme General function prediction only 15898414 Common - First ORF in transposon ISC1229 SSO1601 134 COG0580 GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) Carbohydrate transport and metabolism 15897058 Nonpathogen - hypothetical protein SSO0097 11 COG4046 COG4046, Uncharacterized protein conserved in archaea Function unknown 15898428 Nonpathogen - hypothetical protein SSO8478 1 None None None 15897510 Common hisG ATP phosphoribosyltransferase SSO0593 214 COG0040 HisG, ATP phosphoribosyltransferase Amino acid transport and metabolism 15899118 Common - hypothetical protein SSO2360 25 COG2425 COG2425, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain General function prediction only 15897863 Nonpathogen - hypothetical protein SSO0986 2 None None None 15899149 Nonpathogen - hypothetical protein SSO2397 28 COG1829 COG1829, Predicted archaeal kinase (sugar kinase superfamily) General function prediction only 15899500 Nonpathogen - Third ORF in transposon ISC1225 SSO2784 1 COG3385 COG3385, FOG: Transposase and inactivated derivatives DNA replication, recombination, and repair 15897294 Nonpathogen - hypothetical protein SSO0359 3 COG2044 COG2044, Predicted peroxiredoxins General function prediction only 15898632 Nonpathogen - hypothetical protein SSO1831 2 None None None 15898554 Common - hypothetical protein SSO1755 79 COG2013 COG2013, Uncharacterized conserved protein Function unknown 15898759 Common - hypothetical protein SSO1963 12 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15899262 Common pepQ-like3 Prolidase (Xaa-Pro dipeptidase) (pepQ-like3) SSO2527 90 COG1228 HutI, Imidazolonepropionase and related amidohydrolases Secondary metabolites biosynthesis, transport, and catabolism 15899547 Common - hypothetical protein SSO2832 90 COG1402 COG1402, Uncharacterized protein, putative amidase General function prediction only 15897885 Common ilvB-3 pyruvate dehydrogenase SSO1012 221 COG0028 IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] Amino acid transport and metabolism / Coenzyme metabolism 15898679 Nonpathogen - hypothetical protein SSO9136 7 COG2250 COG2250, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN Function unknown 15898120 Nonpathogen - hypothetical protein SSO1278 1 None None None 15898174 Common - hypothetical protein SSO1331 18 COG3410 COG3410, Uncharacterized conserved protein Function unknown 15899573 Common - Selenium-binding protein SSO2860 18 None None None 15897414 Common - Phosphate ABC transporter, ATP-binding protein SSO0488 249 COG1117 PstB, ABC-type phosphate transport system, ATPase component Inorganic ion transport and metabolism 15898476 Nonpathogen - hypothetical protein SSO1657 6 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899933 Nonpathogen - Cobalamin synthase related protein SSO3234 12 COG0368 CobS, Cobalamin-5-phosphate synthase Coenzyme metabolism 15899131 Nonpathogen eiF1A translation initiation factor IF-1A SSO2375 34 COG0361 InfA, Translation initiation factor 1 (IF-1) Translation, ribosomal structure and biogenesis 15898673 Common - ATP-dependent helicase, putative SSO1879 184 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 15899120 Nonpathogen SSB single-strand DNA-binding protein SSO2364 18 COG1599 RFA1, Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins DNA replication, recombination, and repair 15899127 Nonpathogen - hypothetical protein SSO2371 12 COG4034 COG4034, Uncharacterized protein conserved in archaea Function unknown 15897288 Nonpathogen rpl39e 50S ribosomal protein L39e SSO5672 9 COG2167 RPL39, Ribosomal protein L39E Translation, ribosomal structure and biogenesis 15897077 Nonpathogen - hypothetical protein SSO0117 2 None None None 15897423 Nonpathogen - hypothetical protein SSO0499 1 None None None 15897892 Common - hydrogenase 4 subunit F SSO1024 209 COG0651 HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit Energy production and conversion / Inorganic ion transport and metabolism 15897368 Nonpathogen - hypothetical protein SSO0438 7 None None None 15898080 Nonpathogen - hypothetical protein SSO1229 2 None None None 15897260 Nonpathogen - hypothetical protein SSO0320 2 COG1331 COG1331, Highly conserved protein containing a thioredoxin domain Posttranslational modification, protein turnover, chaperones 15899356 Common - Oxidoreductase (flavoprotein) SSO2629 116 COG0446 HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases General function prediction only 15899428 Nonpathogen - hypothetical protein SSO2712 8 COG1653 UgpB, ABC-type sugar transport system, periplasmic component Carbohydrate transport and metabolism 15897919 Nonpathogen eiF2A translation initiation factor IF-2 subunit alpha SSO1050 34 COG1093 SUI2, Translation initiation factor 2, alpha subunit (eIF-2alpha) Translation, ribosomal structure and biogenesis 15897224 Nonpathogen - hypothetical protein SSO0280 3 COG1405 SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB Transcription 15899442 Nonpathogen - Amino acid transporter, putative SSO2726 9 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15898813 Common - Ring oxydation complex/ phenylacetic acid degradation related protein SSO2022 30 COG3327 PaaX, Phenylacetic acid-responsive transcriptional repressor Transcription 15899797 Common - hypothetical protein SSO3086 10 None None None 15898089 Nonpathogen - Second ORF in partial transposon ISC1491 SSO7475 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899350 Common acaB-7 acetyl-CoA acetyltransferase SSO2625 98 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15897175 Common infB translation initiation factor IF-2 SSO0228 249 COG0532 InfB, Translation initiation factor 2 (IF-2; GTPase) Translation, ribosomal structure and biogenesis 15899341 Common dppD-3 Dipeptide ABC transporter ATP binding protein (dppD-3) SSO2616 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898483 Nonpathogen - hypothetical protein SSO1666 1 None None None 15898760 Common - First ORF in transposon ISC1913 SSO1964 22 COG2452 COG2452, Predicted site-specific integrase-resolvase DNA replication, recombination, and repair 15897086 Common leuA-1 putative alpha-isopropylmalate/homocitrate synthase family transferase SSO0127 216 COG0119 LeuA, Isopropylmalate/homocitrate/citramalate synthases Amino acid transport and metabolism 15898214 Nonpathogen - hypothetical protein SSO1375 1 COG3889 COG3889, Predicted solute binding protein General function prediction only 15897507 Common leuS leucyl-tRNA synthetase SSO0589 249 COG0495 LeuS, Leucyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15899147 Nonpathogen - hypothetical protein SSO2395 1 None None None 15898508 Common - Amino acid transporter related protein SSO1693 116 COG0531 PotE, Amino acid transporters Amino acid transport and metabolism 15898257 Common - hypothetical protein SSO1418 13 COG1373 COG1373, Predicted ATPase (AAA+ superfamily) General function prediction only 15897477 Nonpathogen - hypothetical protein SSO0555 5 None None None 15897593 Common - ABC transporter, ATP binding protein. SSO0688 249 COG1136 SalX, ABC-type antimicrobial peptide transport system, ATPase component Defense mechanisms 15897301 Common glnA-1 Glutamine synthetase (glutamate ammonia ligase) (GS). (glnA-1) SSO0366 225 COG0174 GlnA, Glutamine synthetase Amino acid transport and metabolism 15897775 Common - Acylphosphatase SSO0887 146 COG1254 AcyP, Acylphosphatases Energy production and conversion 15899730 Common - Second ORF in transposase ISC1058 SSO3023 15 COG1864 NUC1, DNA/RNA endonuclease G, NUC1 Nucleotide transport and metabolism 15899022 Common - Purine NTPase SSO2249 69 COG0419 SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair 15897925 Common - hypothetical protein SSO1056 15 COG1765 COG1765, Predicted redox protein, regulator of disulfide bond formation Posttranslational modification, protein turnover, chaperones 15899765 Common fucA1 Alpha-fucosidase N-terminal fragment (fucA1) SSO11867 18 COG3669 COG3669, Alpha-L-fucosidase Carbohydrate transport and metabolism 15898103 Common - hypothetical protein SSO1260 67 COG2721 UxaA, Altronate dehydratase Carbohydrate transport and metabolism 15899004 Common - hypothetical protein SSO2229 27 COG2107 COG2107, Predicted periplasmic solute-binding protein General function prediction only 15897698 Nonpathogen - hypothetical protein SSO0795 2 None None None 15899722 Common - Dehydrogenase, putative SSO3015 189 COG0673 MviM, Predicted dehydrogenases and related proteins General function prediction only 15898271 Nonpathogen - hypothetical protein SSO1432 4 COG1337 COG1337, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) DNA replication, recombination, and repair 15898341 Nonpathogen - hypothetical protein SSO1515 7 None None None 15897192 Common tdcB Threonine dehydratase catabolic (threonine deaminase) (tdcB) SSO0248 194 COG1171 IlvA, Threonine dehydratase Amino acid transport and metabolism 15897416 Common pstC Phosphate transport system permease protein (pstC) SSO0490 221 COG0573 PstC, ABC-type phosphate transport system, permease component Inorganic ion transport and metabolism 15899746 Common - hypothetical protein SSO3039 17 COG4354 COG4354, Predicted bile acid beta-glucosidase Carbohydrate transport and metabolism 15898608 Nonpathogen - hypothetical protein SSO1807 7 COG3374 COG3374, Predicted membrane protein Function unknown 15898878 Common treX Glycogen debranching enzyme (treX) SSO2094 168 COG1523 PulA, Type II secretory pathway, pullulanase PulA and related glycosidases Carbohydrate transport and metabolism 15899760 Common - Maltose ABC transporter, ATP-binding protein SSO3055 249 COG0444 DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Amino acid transport and metabolism / Inorganic ion transport and metabolism 15897421 Common - hypothetical protein SSO0496 3 None None None 15897101 Nonpathogen - hypothetical protein SSO0149 5 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 15899114 Common sdhA succinate dehydrogenase flavoprotein subunit SSO2356 226 COG1053 SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Energy production and conversion 15899561 Nonpathogen - hypothetical protein SSO2846 1 COG0683 LivK, ABC-type branched-chain amino acid transport systems, periplasmic component Amino acid transport and metabolism 15897781 Common trpGD anthranilate synthase component II SSO0894 239 COG0512 PabA, Anthranilate/para-aminobenzoate synthases component II Amino acid transport and metabolism / Coenzyme metabolism 15897675 Nonpathogen - hypothetical protein SSO0772 3 COG1711 COG1711, Uncharacterized protein conserved in archaea Function unknown 15899383 Nonpathogen soxL-1 Rieske iron-sulfur protein-1 (soxL-1) SSO2660 12 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 15897105 Nonpathogen - hypothetical protein SSO0154 2 None None None 15898445 Nonpathogen - hypothetical protein SSO1625 1 None None None 15899897 Common gapN-3 Glyceraldehyde-3-phosphate dehydrogenase, NADP dependent (gapN-3) SSO3194 220 COG1012 PutA, NAD-dependent aldehyde dehydrogenases Energy production and conversion 15899642 Common - Second ORF in transposon ISC1048 SSO2931 22 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898236 Nonpathogen - Transposase ISC1225 SSO1396 5 None None None 15899606 Common - Second ORF in transposon ISC1190 SSO2893 8 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897942 Common - hypothetical protein SSO1075 131 COG2905 COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains Signal transduction mechanisms 15897308 Common nirJ-like Heme biosynthesis related protein (nirJ-like) (nirJ-like) SSO0373 123 COG0535 COG0535, Predicted Fe-S oxidoreductases General function prediction only 15898194 Common - hypothetical protein SSO1353 16 COG4354 COG4354, Predicted bile acid beta-glucosidase Carbohydrate transport and metabolism 15897143 Common - Glutaredoxin related protein SSO0192 46 COG3634 AhpF, Alkyl hydroperoxide reductase, large subunit Posttranslational modification, protein turnover, chaperones 15899497 Common - Transposase ISC1316 SSO2782 77 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899885 Nonpathogen - hypothetical protein SSO3181 1 None None None 15899589 Common - hypothetical protein SSO2879 99 COG1975 XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family Posttranslational modification, protein turnover, chaperones 15899705 Nonpathogen - hypothetical protein SSO2994 1 None None None 15897846 Common - putative deoxyhypusine synthase SSO0967 61 COG1899 DYS1, Deoxyhypusine synthase Posttranslational modification, protein turnover, chaperones 15899871 Common - MutT-like protein SSO3167 64 COG1051 COG1051, ADP-ribose pyrophosphatase Nucleotide transport and metabolism 15898987 Nonpathogen - hypothetical protein SSO2212 2 None None None 15898618 Nonpathogen - hypothetical protein SSO1816 8 COG0348 NapH, Polyferredoxin Energy production and conversion 15898298 Common pcp pyrrolidone-carboxylate peptidase SSO1465 55 COG2039 Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) Posttranslational modification, protein turnover, chaperones 15898765 Nonpathogen - hypothetical protein SSO9378 10 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 15898823 Common - hypothetical protein SSO2031 24 COG0619 CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters Inorganic ion transport and metabolism 15899827 Common - Metabolite transport protein, putative SSO3120 109 COG2270 COG2270, Permeases of the major facilitator superfamily General function prediction only 15899073 Common - Transposon ISC1190 SSO2312 93 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897401 Common - DNA repair protein rad25 SSO0473 109 COG1061 SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair 15899247 Common - hypothetical protein SSO2509 32 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15897832 Common - diphthine synthase SSO0953 36 COG1798 DPH5, Diphthamide biosynthesis methyltransferase Translation, ribosomal structure and biogenesis 15898547 Nonpathogen - hypothetical protein SSO1746 4 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15899183 Common cobA Uroporphyrinogen III methylase (cobA) SSO2435 208 COG0007 CysG, Uroporphyrinogen-III methylase Coenzyme metabolism 161777478 Common truB tRNA pseudouridine synthase B SSO0393 131 COG0130 TruB, Pseudouridine synthase Translation, ribosomal structure and biogenesis 15897276 Common alaS alanyl-tRNA synthetase SSO0341 249 COG0013 AlaS, Alanyl-tRNA synthetase Translation, ribosomal structure and biogenesis 15898849 Common acd-3 Acyl-CoA dehydrogenase (acd-3) SSO2060 156 COG1960 CaiA, Acyl-CoA dehydrogenases Lipid metabolism 15898351 Nonpathogen - hypothetical protein SSO1523 1 COG5550 COG5550, Predicted aspartyl protease Posttranslational modification, protein turnover, chaperones 15898185 Nonpathogen - hypothetical protein SSO1344 9 COG5493 COG5493, Uncharacterized conserved protein containing a coiled-coil domain Function unknown 15897837 Common gatC aspartyl/glutamyl-tRNA amidotransferase subunit C SSO6855 43 COG0721 GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Translation, ribosomal structure and biogenesis 15897161 Nonpathogen - hypothetical protein SSO0213 14 COG1665 COG1665, Uncharacterized protein conserved in archaea Function unknown 15898905 Common bcp-2 putative peroxiredoxin SSO2121 215 COG0450 AhpC, Peroxiredoxin Posttranslational modification, protein turnover, chaperones 15898459 Nonpathogen - hypothetical protein SSO1640 10 None None None 15897029 Common - isopentenyl pyrophosphate isomerase SSO0063 80 COG1304 LldD, L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases Energy production and conversion 15898038 Common entB-like1 Isochorismatase related protein (entB-like1) SSO1184 81 COG1335 PncA, Amidases related to nicotinamidase Secondary metabolites biosynthesis, transport, and catabolism 15899385 Nonpathogen - hypothetical protein SSO2662 2 None None None 15897724 Nonpathogen - hypothetical protein SSO0823 1 None None None 15898593 Common - First ORF in transposon ISC1229 SSO1795 2 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898068 Common - Second ORF in transposon ISC1778 SSO1216 66 COG0675 COG0675, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899269 Common paaF-5 Enoyl CoA hydratase (paaF-5) SSO2535 181 COG1024 CaiD, Enoyl-CoA hydratase/carnithine racemase Lipid metabolism 15899400 Nonpathogen - hypothetical protein SSO2676 3 None None None 15899475 Common - Molybdopterin oxidoreductase, iron-sulfur binding subunit SSO2759 171 COG0437 HybA, Fe-S-cluster-containing hydrogenase components 1 Energy production and conversion 15897684 Nonpathogen - hypothetical protein SSO6503 28 COG1698 COG1698, Uncharacterized protein conserved in archaea Function unknown 15899521 Common soxL-2 Rieske iron-sulfur protein-1 (soxL-2) SSO2803 15 COG0723 QcrA, Rieske Fe-S protein Energy production and conversion 15898289 Common gdhA-1 NAD specific glutamate dehydrogenase (gdhA-1) SSO1457 179 COG0334 GdhA, Glutamate dehydrogenase/leucine dehydrogenase Amino acid transport and metabolism 15899452 Nonpathogen - hypothetical protein SSO2736 2 COG2442 COG2442, Uncharacterized conserved protein Function unknown 15896975 Common rbsK-1 Ribokinase (rbsK-1) SSO0004 203 COG0524 RbsK, Sugar kinases, ribokinase family Carbohydrate transport and metabolism 15898867 Nonpathogen - hypothetical protein SSO2081 2 None None None 15897620 Common rpl2p 50S ribosomal protein L2P SSO0716 248 COG0090 RplB, Ribosomal protein L2 Translation, ribosomal structure and biogenesis 15898975 Common - hypothetical protein SSO2200 70 COG0433 COG0433, Predicted ATPase General function prediction only 15899206 Common - DNA helicase related protein SSO2462 157 COG1204 COG1204, Superfamily II helicase General function prediction only 15899486 Nonpathogen - hypothetical protein SSO2772 4 COG4280 COG4280, Predicted membrane protein Function unknown 15899784 Nonpathogen - hypothetical protein SSO11914 6 COG2002 AbrB, Regulators of stationary/sporulation gene expression Transcription 15897212 Common hflX GTP-binding protein (hflX) SSO0269 225 COG2262 HflX, GTPases General function prediction only 15897673 Nonpathogen cdc6 cell division control protein 6 SSO0771 31 COG1474 CDC6, Cdc6-related protein, AAA superfamily ATPase DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones 15899479 Common etfB Electron transfer flavoprotein, subunit beta (etfB) SSO2763 153 COG2086 FixA, Electron transfer flavoprotein, beta subunit Energy production and conversion 15899661 Common dcD-2 Deoxycytidine triphosphate deaminase (dcD-2) SSO2954 18 COG0717 Dcd, Deoxycytidine deaminase Nucleotide transport and metabolism 15898532 Nonpathogen - Transposase ISC1217 SSO1728 1 None None None 15899303 Common sfsA sugar fermentation stimulation protein A SSO2571 109 COG1489 SfsA, DNA-binding protein, stimulates sugar fermentation General function prediction only 15898094 Nonpathogen - First ORF in transposon ISC1217 SSO1250 1 None None None 15898719 Nonpathogen - hypothetical protein SSO1920 1 None None None 15898969 Common - hypothetical protein SSO2192 25 COG2105 COG2105, Uncharacterized conserved protein Function unknown 15898862 Nonpathogen - hypothetical protein SSO2076 4 COG1914 MntH, Mn2+ and Fe2+ transporters of the NRAMP family Inorganic ion transport and metabolism 15898832 Common acsA-5 Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-5) SSO2041 222 COG0365 Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases Lipid metabolism 15898712 Nonpathogen - hypothetical protein SSO1914 4 COG4113 COG4113, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897783 Common aspB-2 aspartate aminotransferase SSO0897 241 COG0436 COG0436, Aspartate/tyrosine/aromatic aminotransferase Amino acid transport and metabolism 15897053 Common lysS Lysyl-tRNA synthetase (lysS) SSO0090 240 COG1190 LysU, Lysyl-tRNA synthetase (class II) Translation, ribosomal structure and biogenesis 15897519 Common serS seryl-tRNA synthetase SSO0602 243 COG0172 SerS, Seryl-tRNA synthetase Translation, ribosomal structure and biogenesis 15899528 Nonpathogen - hypothetical protein SSO2812 2 None None None 15898376 Nonpathogen - hypothetical protein SSO1555 1 None None None 15899617 Nonpathogen - hypothetical protein SSO2903 2 None None None 15898244 Nonpathogen - hypothetical protein SSO1404 9 COG1343 COG1343, Uncharacterized protein predicted to be involved in DNA repair DNA replication, recombination, and repair 15899507 Common acpA Acid phosphatase, putative (acpA) SSO2789 35 COG3511 PlcC, Phospholipase C Cell envelope biogenesis, outer membrane 15899423 Common mtaP 5'-methylthioadenosine phosphorylase (mtaP) SSO2706 98 COG2820 Udp, Uridine phosphorylase Nucleotide transport and metabolism 15898333 Common - Membrane transporter SSO1505 97 COG2271 UhpC, Sugar phosphate permease Carbohydrate transport and metabolism 15897713 Common galE-2 UDP-glucose 4-epimerase (galE-2) SSO0809 233 COG0451 WcaG, Nucleoside-diphosphate-sugar epimerases Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism 15899086 Nonpathogen - hypothetical protein SSO2328 2 None None None 15899811 Nonpathogen - hypothetical protein SSO3103 5 COG2512 COG2512, Uncharacterized membrane-associated protein/domain Function unknown 15898053 Common - Transposase ISC1048 SSO1200 54 COG3415 COG3415, Transposase and inactivated derivatives DNA replication, recombination, and repair 15899374 Nonpathogen - hypothetical protein SSO2648 3 None None None 15897398 Nonpathogen - hypothetical protein SSO0470 15 COG3276 SelB, Selenocysteine-specific translation elongation factor Translation, ribosomal structure and biogenesis 15897607 Nonpathogen rpl32e 50S ribosomal protein L32e SSO0701 34 COG1717 RPL32, Ribosomal protein L32E Translation, ribosomal structure and biogenesis 15898304 Nonpathogen - First ORF in transposon ISC1439 SSO1472 1 None None None 15898146 Common - Metabolite transport related protein SSO1305 99 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15897938 Common - Partial transposase ISC1229 SSO1070 20 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898473 Common - Helicase of the snf2/rad54 family (carboxy end fragment), hypothetical SSO1655 120 COG0553 HepA, Superfamily II DNA/RNA helicases, SNF2 family Transcription / DNA replication, recombination, and repair 15898517 Common - Second ORF in transposon ISC1048 SSO1706 22 COG3335 COG3335, Transposase and inactivated derivatives DNA replication, recombination, and repair 15898850 Common acaB-2 acetyl-CoA acetyltransferase SSO2061 64 COG0183 PaaJ, Acetyl-CoA acetyltransferase Lipid metabolism 15899157 Nonpathogen - hypothetical protein SSO10342 5 None None None 15898853 Common - hypothetical protein SSO2064 10 COG1545 COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon General function prediction only 15899108 Nonpathogen - hypothetical protein SSO10258 2 None None None 15899015 Nonpathogen - Second ORF in transposon ISC774 SSO10075 1 None None None 15899164 Nonpathogen - hypothetical protein SSO2411 2 None None None 15897505 Common - hypothetical protein SSO0586 141 COG0037 MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Cell division and chromosome partitioning 15898061 Common porG-1 Pyruvate synthase gamma chain (Pyruvic-ferredoxin oxidoreductase gamma chain) (porG-1) SSO1208 80 COG1014 PorG, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit Energy production and conversion 15897092 Nonpathogen - Second ORF in transposon ISC1212 SSO0134 1 None None None 15899714 Common - hypothetical protein SSO3007 15 COG3934 COG3934, Endo-beta-mannanase Carbohydrate transport and metabolism 15897310 Common - Na(+)/H(+) antiporter SSO0376 32 COG0475 KefB, Kef-type K+ transport systems, membrane components Inorganic ion transport and metabolism 15896992 Nonpathogen - hypothetical protein SSO0020 5 COG1665 COG1665, Uncharacterized protein conserved in archaea Function unknown 15899277 Nonpathogen - Partial transposase ISC1058 SSO10604 2 None None None 15898828 Nonpathogen - Thermopsin precursor, probable SSO2037 6 None None None 15897128 Nonpathogen ef1B elongation factor 1-beta SSO5345 32 COG2092 EFB1, Translation elongation factor EF-1beta Translation, ribosomal structure and biogenesis 15899450 Nonpathogen - hypothetical protein SSO11020 1 None None None 15899833 Nonpathogen - hypothetical protein SSO3128 1 COG1848 COG1848, Predicted nucleic acid-binding protein, contains PIN domain General function prediction only 15897121 Nonpathogen - hypothetical protein SSO0171 8 COG4914 COG4914, Predicted nucleotidyltransferase General function prediction only 15897130 Nonpathogen rad2 flap endonuclease-1 SSO0179 34 COG0258 Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair 15898897 Common - Metabolite permease, putative SSO2113 49 COG0591 PutP, Na+/proline symporter Amino acid transport and metabolism / General function prediction only 15898180 Common - Permease, sugar transport protein, putative SSO1338 147 COG2814 AraJ, Arabinose efflux permease Carbohydrate transport and metabolism 15899393 Common - ABC transporter, permease protein SSO2671 215 COG1173 DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Amino acid transport and metabolism / Inorganic ion transport and metabolism 15898524 Nonpathogen - First ORF in transposon ISC1491 SSO8760 1 None None None 15897629 Common - 2-haloalkanoic acid dehalogenase, putative SSO0726 56 COG1011 COG1011, Predicted hydrolase (HAD superfamily) General function prediction only 15899094 Common - hypothetical protein SSO2336 6 COG1192 Soj, ATPases involved in chromosome partitioning Cell division and chromosome partitioning 15899780 Nonpathogen - Partial transposase in ISC1190 SSO3076 1 COG3547 COG3547, Transposase and inactivated derivatives DNA replication, recombination, and repair 15897737 Nonpathogen - hypothetical protein SSO0838 2 COG2520 COG2520, Predicted methyltransferase General function prediction only 15897279 Common rpl1P 50S ribosomal protein L1P SSO0345 216 COG0081 RplA, Ribosomal protein L1 Translation, ribosomal structure and biogenesis 15899601 Nonpathogen - Second ORF in transposon ISC1225 SSO2888 1 None None None 15896981 Common - hypothetical protein SSO0011 20 COG1361 COG1361, S-layer domain Cell envelope biogenesis, outer membrane 15898139 Nonpathogen - hypothetical protein SSO1297 2 None None None