IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
625	 47.69	0	618931..619752	+	273	56551521	fleN	ZMO0625	-	flagellar synthesis regulator
626	 47.04	0	619742..620485	+	247	56551522	fliA	ZMO0626	-	flagellar-specific RNA polymerase sigma factor
627	 41.63	0	620618..621304	+	228	56551523	-	ZMO0627	-	hypothetical protein
628	 38.12	-1	621363..621989	+	208	56551524	-	ZMO0628	-	hypothetical protein
629	 48.77	0	622080..622934	-	284	56551525	fliC	ZMO0629	-	flagellin
630	 50.26	0	623618..624001	+	127	56551526	-	ZMO0630	-	hypothetical protein
631	 51.16	0	624040..624942	+	300	56551527	-	ZMO0631	-	two-component response regulator
632	 48.54	0	625049..625390	+	113	56551528	fliE	ZMO0632	-	flagellar hook-basal body complex protein
633	 52.78	+1	625394..627049	+	551	56551529	fliF	ZMO0633	-	flagellar M-ring protein
634	 51.77	+1	627114..627254	+	46	56551530	-	ZMO0634	-	hypothetical protein
635	 49.08	0	627247..628281	+	344	56551531	fliG	ZMO0635	-	flagellar motor switch protein
636	 45.05	0	628268..629035	+	255	56551532	-	ZMO0636	-	flagellar biosynthetic protein
637	 49.11	0	629032..629925	+	297	56551533	fliI	ZMO0637	-	flagellum-specific ATP synthase
638	 46.48	0	630361..630786	+	141	56551534	-	ZMO0638	-	hypothetical protein
639	 41.89	0	630783..631331	+	182	56551535	-	ZMO0639	-	hypothetical protein
640	 42.08	0	631386..632666	+	426	56551536	-	ZMO0640	-	hypothetical protein
641	 44.44	0	632782..633186	+	134	56551537	motD	ZMO0641	-	chemotaxis protein
642	 39.82	-1	633199..633768	+	189	56551538	-	ZMO0642	-	hypothetical protein
643	 46.95	0	633765..634763	+	332	56551539	fliM	ZMO0643	-	flagellar switch protein
644	 40.71	-1	634760..635071	+	103	56551540	fliN	ZMO0644	-	flagellar motor switch
645	 40.61	-1	635064..635228	+	54	56551541	-	ZMO0645	-	hypothetical protein
646	 37.38	-1	635068..635388	+	106	56551542	fliO	ZMO0646	-	flagellar protein
647	 42.27	0	635393..636343	+	316	56551543	fliP	ZMO0647	-	flagellar biosynthesis protein FliP
648	 41.30	0	636340..636615	+	91	56551544	fliQ	ZMO0648	-	flagellar biosynthetic protein
649	 43.36	0	636629..637426	+	265	56551545	fliR	ZMO0649	-	flagellar biosynthetic protein
650	 41.99	0	637416..638558	+	380	56551546	flhB	ZMO0650	-	flagellar biosynthesis protein FlhB
651	 44.07	0	638660..640354	+	564	56551547	fliD	ZMO0651	-	flagellar hook-associated protein 2
652	 42.56	0	640395..640784	+	129	56551548	fliS	ZMO0652	-	flagellar protein
653	 42.76	0	640877..641947	-	356	56551549	-	ZMO0653	-	permease
654	 43.92	0	641996..645376	-	1126	56551550	-	ZMO0654	-	glycosyltransferase
655	 43.96	0	645528..647108	+	526	56551551	add	ZMO0655	-	adenosine deaminase
656	 44.06	0	647236..647757	-	173	56551552	gpt	ZMO0656	-	putative purine phosphoribosyltransferase
657	 45.29	0	647835..648863	-	342	56551553	aruG	ZMO0657	-	arginine/ornithine N-succinyltransferase beta subunit
658	 45.89	0	648860..650014	-	384	56551554	-	ZMO0658	-	hypothetical protein
659	 46.15	0	650527..651072	+	181	56551555	-	ZMO0659	-	hypothetical protein
660	 47.85	0	651304..653211	+	635	56551556	dnaK	ZMO0660	-	DnaK molecular chaperone
661	 50.18	0	653331..654458	+	375	56551557	dnaJ	ZMO0661	-	DnaJ molecular chaperone
662	 47.61	0	654569..655864	-	431	56551558	purB	ZMO0662	-	adenylosuccinate lyase
663	 47.51	0	656004..656687	-	227	56551559	radC	ZMO0663	-	DNA repair protein
664	 43.52	0	656842..659982	+	1046	56551560	-	ZMO0664	-	exoproteins
665	 44.78	0	660037..660237	+	66	56551561	-	ZMO0665	-	hypothetical protein
666	 48.62	0	660234..660632	+	132	56551562	-	ZMO0666	-	hypothetical protein
667	 48.19	0	661242..662042	+	266	56551563	atpB	ZMO0667	-	F0F1 ATP synthase subunit A
668	 55.00	+1	662078..662317	+	79	56551564	atpE	ZMO0668	-	ATP synthase C chain
669	 48.90	0	662439..662939	+	166	56551565	atpG	ZMO0669	-	ATP synthase B chain
670	 53.49	+1	662953..663210	+	85	56551566	-	ZMO0670	-	hypothetical protein
671	 47.99	0	663245..663592	+	115	56551567	atpF	ZMO0671	-	ATP synthase subunit b
672	 43.21	0	663747..665741	+	664	56551568	uvrC	ZMO0672	-	excinuclease ABC subunit C
673	 42.82	0	665783..666541	+	252	56551569	recO	ZMO0673	-	DNA repair protein RecO
674	 46.10	0	666579..667103	+	174	56551570	-	ZMO0674	-	hypothetical protein
675	 46.05	0	667104..667913	-	269	56551571	-	ZMO0675	-	LysR family transcriptional regulator
676	 48.97	0	667980..669188	-	402	56551572	-	ZMO0676	-	cystathionine beta-lyase
677	 48.10	0	669255..670304	-	349	56551573	leuB	ZMO0677	-	3-isopropylmalate dehydrogenase
678	 46.15	0	670437..671060	-	207	56551574	tdsD	ZMO0678	-	nitroreductase
679	 23.53	-2	671150..671251	+	33	56551575	-	ZMO0679	-	hypothetical protein
680	 44.03	0	671414..672451	+	345	56551576	-	ZMO0680	-	hypothetical protein
681	 43.72	0	672448..674391	+	647	56551577	-	ZMO0681	-	hypothetical protein
682	 42.05	0	675915..677234	+	439	56551578	-	ZMO0682	-	hypothetical protein
683	 40.75	-1	677276..678259	+	327	56551579	-	ZMO0683	-	hypothetical protein
684	 43.13	0	678308..679348	+	346	56551580	-	ZMO0684	-	hypothetical protein
685	 41.50	0	679332..679919	+	195	56551581	-	ZMO0685	-	hypothetical protein
686	 34.75	-2	680361..680783	+	140	56551582	-	ZMO0686	-	hypothetical protein
687	 45.61	0	680870..682531	-	553	56551583	budB	ZMO0687	-	acetolactate synthase
688	 36.49	-1	682595..683101	-	168	56551584	-	ZMO0688	-	permease
689	 50.84	0	683751..685052	-	433	56551585	gfo	ZMO0689	-	glucose-fructose oxidoreductase chain A
690	 21.97	-2	685469..685600	-	43	56551586	-	ZMO0690	-	hypothetical protein
691	 45.71	0	685680..687020	-	446	56551587	gid	ZMO0691	-	tRNA (uracil-5-)-methyltransferase Gid
692	 49.50	0	687069..689846	-	925	56551588	gyrA	ZMO0692	-	DNA gyrase subunit A
693	 49.53	0	689915..690340	-	141	56551589	-	ZMO0693	-	organic hydroperoxide resistance protein
694	 43.94	0	690622..691347	-	241	56551590	-	ZMO0694	-	hypothetical protein
695	 46.42	0	692058..695633	-	1191	56551591	-	ZMO0695	-	hypothetical protein
696	 37.96	-1	695694..695801	-	35	56551592	-	ZMO0696	-	hypothetical protein
697	 41.36	0	696099..696422	-	107	56551593	sugE	ZMO0697	-	multidrug resistance protein
698	 44.58	0	696489..696995	-	168	56551594	-	ZMO0698	-	hypothetical protein
699	 40.10	-1	697132..697323	+	63	56551595	-	ZMO0699	-	hypothetical protein
700	 50.39	0	697330..698367	-	345	56551596	pepX	ZMO0700	-	dipeptidyl aminopeptidase
701	 48.89	0	698222..699346	-	374	56551599	-	ZMO0703	-	colicin tolerance protein
702	 52.94	+1	699327..699479	-	50	56551597	-	ZMO0701	-	hypothetical protein
703	 38.64	-1	699510..699641	-	43	56551598	-	ZMO0702	-	hypothetical protein
704	 49.41	0	699983..701431	-	482	56551600	-	ZMO0704	-	acyl-CoA synthase
705	 39.57	-1	701467..702075	+	202	56551601	-	ZMO0705	-	hypothetical protein
706	 48.46	0	702084..702731	-	215	56551602	nth	ZMO0706	-	endonuclease III
707	 52.42	+1	702728..703492	-	254	56551603	dapB	ZMO0707	-	dihydrodipicolinate reductase
708	 50.88	0	703497..704123	-	208	56551604	purN	ZMO0708	-	folate-dependent phosphoribosylglycinamide formyltransferase
709	 51.41	0	704116..705216	-	366	56551605	purM	ZMO0709	-	phosphoribosylaminoimidazole synthetase
710	 46.36	0	705271..706368	+	365	56551606	-	ZMO0710	-	hypothetical protein
711	 49.30	0	706372..707016	+	214	56551607	-	ZMO0711	-	ATPase
712	 46.80	0	707198..709351	+	717	56551608	ppk	ZMO0712	-	polyphosphate kinase
713	 46.76	0	709518..711044	+	508	56551609	-	ZMO0713	-	exopolyphosphatase
714	 48.34	0	711122..712294	-	390	56551610	rnd	ZMO0714	-	ribonuclease D
715	 49.86	0	712396..714186	+	596	56551611	aspS	ZMO0715	-	aspartyl-tRNA synthetase
716	 45.93	0	714219..715004	+	261	56551612	-	ZMO0716	-	hypothetical protein
717	 41.44	0	714970..715080	-	36	56551613	-	ZMO0717	-	hypothetical protein
718	 49.80	0	715052..715549	-	165	56551614	greB	ZMO0718	-	transcription elongation factor
719	 51.05	0	715624..717717	-	697	56551615	-	ZMO0719	-	transglycosylase
720	 49.32	0	717739..718614	+	291	56551616	dapA	ZMO0720	-	dihydrodipicolinate synthase
721	 46.17	0	718618..719100	+	160	56551617	smpB	ZMO0721	-	SsrA-binding protein
722	 48.68	0	719295..721340	+	681	56551618	-	ZMO0722	-	metallopeptidase
723	 47.13	0	721767..722324	-	185	56551619	nusG	ZMO0723	-	transcription antiterminator
724	 46.30	0	722013..722552	+	179	56551620	nusG	ZMO0724	-	transcription antiterminator
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.