IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
128	 48.52	0	115571..117961	-	796	56551024	-	ZMO0128	-	TonB-dependent receptor
129	 35.56	-2	117948..118127	+	59	56551025	-	ZMO0129	-	hypothetical protein
130	 49.43	0	118386..119180	-	264	56551026	phoC	ZMO0130	-	acid phosphatase precursor
131	 48.34	0	119338..120363	-	341	56551027	-	ZMO0131	-	hypothetical protein
132	 48.09	0	120850..121608	+	252	56551028	-	ZMO0132	-	hypothetical protein
133	 47.23	0	121929..122669	+	246	56551029	-	ZMO0133	-	hypothetical protein
134	 47.70	0	122852..123352	+	166	56551030	-	ZMO0134	-	hypothetical protein
135	 50.08	0	123511..124161	+	216	56551031	-	ZMO0135	-	hypothetical protein
136	 46.03	0	124255..124971	+	238	56551032	-	ZMO0136	-	hypothetical protein
137	 48.21	0	125171..126427	+	418	56551033	-	ZMO0137	-	hypothetical protein
138	 49.59	0	126496..126618	+	40	56551034	-	ZMO0138	-	hypothetical protein
139	 51.68	0	126525..127418	-	297	56551035	-	ZMO0139	-	fructosamine-3-kinase
140	 51.46	0	127484..127963	-	159	56551036	ptpA	ZMO0140	-	protein-tyrosine-phosphatase
141	 38.78	-1	128159..128305	+	48	56551037	-	ZMO0141	-	hypothetical protein
142	 51.40	0	128320..129000	+	226	56551038	-	ZMO0142	-	hypothetical protein
143	 49.08	0	129000..129977	+	325	56551039	-	ZMO0143	-	ABC-type multidrug transport system
144	 50.66	0	130042..131634	+	530	56551040	nadB	ZMO0144	-	aspartate oxidase
145	 48.75	0	131657..133330	+	557	56551041	-	ZMO0145	-	peptidase
146	 39.15	-1	133270..133458	-	62	56551042	-	ZMO0146	-	hypothetical protein
147	 44.14	0	133751..133861	-	36	56551043	-	ZMO0147	-	hypothetical protein
148	 51.30	0	133995..134801	-	268	56551044	-	ZMO0148	-	hypothetical protein
149	 51.29	0	134986..135681	-	231	56551045	trmB	ZMO0149	-	tRNA (guanine-N(7))-methyltransferase
150	 47.85	0	135761..136387	-	208	56551046	-	ZMO0150	-	hypothetical protein
151	 44.21	0	136392..136676	-	94	56551047	-	ZMO0151	-	hypothetical protein
152	 53.22	+1	136654..138081	-	475	56551048	pyk	ZMO0152	-	pyruvate kinase
153	 50.40	0	139093..139842	+	249	56551049	yebC	ZMO0153	-	hypothetical protein
154	 54.96	+1	139877..140380	+	167	56551050	ruvC	ZMO0154	-	Holliday junction resolvasome endonuclease subunit
155	 46.88	0	140422..141063	+	213	56551051	ruvA	ZMO0155	-	Holliday junction resolvasome DNA-binding subunit
156	 46.28	0	141123..141485	-	120	56551052	-	ZMO0156	-	hypothetical protein
157	 47.85	0	141694..142623	-	309	56551053	lhdA	ZMO0157	-	2-hydroxyacid dehydrogenase
158	 50.38	0	142769..143812	+	347	56551054	ruvB	ZMO0158	-	Holliday junction DNA helicase B
159	 47.29	0	143992..144120	+	42	56551055	-	ZMO0159	-	hypothetical protein
160	 46.77	0	144121..144492	+	123	56551056	-	ZMO0160	-	thioesterase
161	 50.09	0	144500..145054	+	184	56551057	-	ZMO0161	-	TolQ biopolymer transport proteins
162	 48.86	0	145216..145743	+	175	56551058	exbD	ZMO0162	-	TolR biopolymer transport protein
163	 54.66	+1	145771..146178	+	135	56551059	-	ZMO0163	-	hypothetical protein
164	 47.28	0	146153..146833	+	226	56551060	tonB	ZMO0164	-	TonB protein
165	 50.69	0	146887..148263	+	458	56551061	tolB	ZMO0165	-	translocation protein TolB
166	 50.66	0	148390..148920	+	176	56551062	-	ZMO0166	-	peptidoglycan-associated protein
167	 40.67	-1	148925..149074	-	49	56551063	-	ZMO0167	-	hypothetical protein
168	 46.08	0	149098..149505	-	135	56551064	glpQ	ZMO0168	-	glycerophosphoryl diester phosphodiesterase
169	 52.42	+1	150839..151582	-	247	56551065	-	ZMO0169	-	putative short chain oxidoreductase
170	 48.91	0	152071..152622	-	183	56551066	glpQ	ZMO0170	-	glycerophosphoryl diester phosphodiesterase
171	 45.46	0	153520..155028	-	502	56551067	-	ZMO0171	-	TonB-dependent receptor
172	 48.98	0	155420..157234	+	604	56551068	thiC	ZMO0172	-	thiamine biosynthesis protein ThiC
173	 44.78	0	157752..158153	-	133	56551069	-	ZMO0173	-	hypothetical protein
174	 42.75	0	158346..158738	-	130	56551070	-	ZMO0174	-	hypothetical protein
175	 46.81	0	158949..159230	-	93	56551071	-	ZMO0175	-	hypothetical protein
176	 49.70	0	159445..161436	+	663	56551072	tklB	ZMO0176	-	transketolase
177	 53.94	+1	161486..162499	+	337	56551073	gap	ZMO0177	-	glyceraldehyde 3-phosphate dehydrogenase
178	 51.26	0	162722..163915	+	397	56551074	pgk	ZMO0178	-	phosphoglycerate kinase
179	 46.34	0	164684..165598	+	304	56551075	fbaB	ZMO0179	-	fructose-bisphosphate aldolase
180	 53.53	+1	165755..166888	-	377	56551076	ispG	ZMO0180	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
181	 29.46	-2	166940..167068	+	42	56551077	-	ZMO0181	-	hypothetical protein
182	 48.96	0	167266..168660	+	464	56551078	ahcY	ZMO0182	-	S-adenosyl-L-homocysteine hydrolase
183	 51.10	0	168954..170636	-	560	56551079	-	ZMO0183	-	putative ABC transporter ATP-binding protein
184	 36.36	-1	171159..171290	-	43	56551081	-	ZMO0185	-	hypothetical protein
185	 50.42	0	171345..171584	+	79	56551080	-	ZMO0184	-	hypothetical protein
186	 46.16	0	171805..173355	+	516	56551082	cysS	ZMO0186	-	cysteinyl-tRNA synthetase
187	 49.96	0	173448..174776	+	442	56551083	aroH	ZMO0187	-	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
188	 45.42	0	175355..177721	+	788	56551084	pbuA	ZMO0188	-	ferric-pseudobactin receptor
189	 50.00	0	177747..179108	-	453	56551085	sdaA	ZMO0189	-	L-serine dehydratase
190	 44.34	0	179199..180116	-	305	56551086	-	ZMO0190	-	transcriptional regulator
191	 46.67	0	180450..181229	-	259	56551087	-	ZMO0191	-	protein-disulfide isomerase
192	 48.68	0	181260..182582	-	440	56551088	-	ZMO0192	-	putative Zn-dependent protease
193	 51.00	0	182954..185692	-	912	56551089	-	ZMO0193	-	ribonuclease
194	 38.37	-1	186017..186274	+	85	56551090	-	ZMO0194	-	hypothetical protein
195	 48.04	0	186454..187242	+	262	56551091	amiA	ZMO0195	-	N-acetylmuramoyl-L-alanine amidase
196	 32.03	-2	187309..187461	+	50	56551092	-	ZMO0196	-	hypothetical protein
197	 48.99	0	187454..190033	+	859	56551093	-	ZMO0197	-	membrane carboxypeptidase
198	 51.42	0	190144..191271	+	375	56551094	rf-2	ZMO0198	-	protein chain release factor B
199	 47.25	0	191324..191977	-	217	56551095	lexA	ZMO0199	-	LexA repressor
200	 50.78	0	192143..193168	-	341	56551096	trpD	ZMO0200	-	anthranilate phosphoribosyltransferase
201	 46.03	0	193195..193824	-	209	56551097	trpG	ZMO0201	-	anthranilate/para-aminobenzoate synthase component II
202	 47.91	0	194772..196664	+	630	56551098	mcpA	ZMO0202	-	chemotaxis methyl-accepting protein
203	 44.22	0	196706..197155	-	149	56551099	pbrR	ZMO0203	-	heavy metal resistance transcriptional regulator
204	 43.98	0	197207..197854	+	215	56551100	czcD	ZMO0204	-	Co/Zn/Cd efflux system component
205	 51.62	0	197858..198781	-	307	56551101	-	ZMO0205	-	nucleoside-diphosphate-sugar epimerase
206	 51.59	0	198778..199971	-	397	56551102	proB	ZMO0206	-	gamma-glutamyl kinase
207	 52.78	+1	199956..200999	-	347	56551103	obgE	ZMO0207	-	GTPase ObgE
208	 51.23	0	201091..201699	-	202	56551104	-	ZMO0208	-	hypothetical protein
209	 49.26	0	201892..202161	-	89	56551105	rpmA	ZMO0209	-	50S ribosomal protein L27
210	 39.84	-1	202206..202328	+	40	56551106	-	ZMO0210	-	hypothetical protein
211	 54.69	+1	202294..202602	-	102	161611322	rplU	ZMO0211	-	50S ribosomal protein L21
212	 36.67	-1	202781..202900	+	39	56551108	-	ZMO0212	-	hypothetical protein
213	 50.22	0	202906..205380	-	824	56551109	sppA	ZMO0213	-	autotransporter
214	 46.12	0	206592..208046	-	484	56551110	dinF	ZMO0214	-	putative cation efflux pump
215	 47.36	0	208259..208921	+	220	56551111	-	ZMO0215	-	5-formyltetrahydrofolate cyclo-ligase
216	 47.02	0	209001..210410	-	469	56551112	-	ZMO0216	-	membrane protein
217	 49.51	0	210418..210621	-	67	56551113	-	ZMO0217	-	hypothetical protein
218	 33.33	-2	210739..210858	+	39	56551114	-	ZMO0218	-	hypothetical protein
219	 47.95	0	210925..213756	+	943	56551115	helY	ZMO0219	-	ATP-dependent helicase
220	 46.02	0	213988..214326	+	112	56551116	fdxA	ZMO0220	-	ferredoxin
221	 49.73	0	214655..215209	+	184	56551117	-	ZMO0221	-	transcriptional regulator
222	 42.33	0	215423..215722	+	99	56551118	-	ZMO0222	-	hypothetical protein
223	 40.94	-1	215802..216563	+	253	56551119	-	ZMO0223	-	hypothetical protein
224	 45.68	0	216572..217219	-	215	56551120	-	ZMO0224	-	hypothetical protein
225	 50.53	0	217219..218340	-	373	56551121	metX	ZMO0225	-	homoserine O-acetyltransferase
226	 48.53	0	218719..219468	+	249	56551122	sdh	ZMO0226	-	serine dehydrogenase
227	 47.58	0	219484..222249	+	921	56551123	polA	ZMO0227	-	DNA polymerase I
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.