IslandPath Analysis: Zymomonas mobilis subsp. mobilis ZM4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.43   STD DEV: 5.31
Zymomonas mobilis subsp. mobilis ZM4, complete genome - 1..2056416
1998 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1171	 44.35	0	1185770..1186804	-	344	56552067	-	ZMO1171	-	glycosyl hydrolase
1172	 45.88	0	1186930..1188204	+	424	56552068	astB	ZMO1172	-	succinylarginine dihydrolase
1173	 43.88	0	1188201..1192370	-	1389	56552069	-	ZMO1173	-	hypothetical protein
1174	 44.97	0	1192370..1194586	-	738	56552070	-	ZMO1174	-	outer membrane protein
1175	 45.16	0	1194586..1195608	-	340	56552071	-	ZMO1175	-	two-component signal transduction histidine kinase
1176	 45.08	0	1195661..1195924	-	87	56552072	-	ZMO1176	-	hypothetical protein
1177	 47.52	0	1195999..1196724	-	241	56552073	-	ZMO1177	-	two-component response regulator
1178	 41.07	-1	1196752..1197126	-	124	56552074	hisI	ZMO1178	-	phosphoribosyl-AMP cyclohydrolase
1179	 45.64	0	1197181..1198374	-	397	56552075	ygcA	ZMO1179	-	putative RNA methyltransferase
1180	 49.69	0	1198371..1199825	-	484	56552076	-	ZMO1180	-	sugar kinase
1181	 41.73	0	1200184..1200921	-	245	56552077	hutG	ZMO1181	-	N-formylglutamate amidohydrolase
1182	 44.17	0	1201082..1201930	-	282	56552078	ispE	ZMO1182	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1183	 43.80	0	1202225..1203868	-	547	56552079	-	ZMO1183	-	hypothetical protein
1184	 44.44	0	1203986..1205641	-	551	56552080	yjcC	ZMO1184	-	electrotransfer ubiquinone oxidoreductase
1185	 35.22	-2	1205936..1206730	+	264	56552081	-	ZMO1185	-	phage SPO1 DNA polymerase-related protein
1186	 43.49	0	1207593..1208645	+	350	56552082	mltB	ZMO1186	-	lytic murein transglycosylase
1187	 36.90	-1	1208657..1209469	-	270	56552083	mutM	ZMO1187	-	formamidopyrimidine-DNA glycosylase
1188	 39.23	-1	1209779..1210507	+	242	56552084	ubiE	ZMO1188	-	ubiquinone methyltransferase
1189	 40.94	-1	1210511..1212049	+	512	56552085	-	ZMO1189	-	ubiquinone biosynthesis protein
1190	 40.59	-1	1212076..1213329	+	417	56552086	dfp	ZMO1190	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1191	 42.86	0	1213361..1213801	+	146	56552087	dut	ZMO1191	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1192	 43.61	0	1213798..1214556	+	252	56552088	moeB	ZMO1192	-	molybdopterin biosynthesis protein
1193	 51.92	+1	1214965..1218618	-	1217	56552089	topA	ZMO1193	-	DNA topoisomerase I
1194	 51.38	0	1218755..1219912	-	385	56552090	-	ZMO1194	-	DNA processing chain A
1195	 51.45	0	1219962..1220618	-	218	56552091	-	ZMO1195	-	hypothetical protein
1196	 46.99	0	1220894..1222306	+	470	56552092	-	ZMO1196	-	permease
1197	 48.26	0	1222331..1223161	+	276	56552093	murI	ZMO1197	-	glutamate racemase
1198	 50.29	0	1223297..1224511	+	404	161611318	hemA	ZMO1198	-	5-aminolevulinate synthase
1199	 35.80	-2	1224533..1224694	+	53	56552095	-	ZMO1199	-	hypothetical protein
1200	 46.62	0	1224730..1225203	+	157	56552096	rpiA	ZMO1200	-	ribose 5-phosphate isomerase
1201	 52.56	+1	1225223..1226512	+	429	56552097	glyA	ZMO1201	-	serine hydroxymethyltransferase
1202	 48.20	0	1226517..1226987	+	156	161611317	-	ZMO1202	-	transcriptional regulator NrdR
1203	 50.27	0	1226984..1227715	+	243	56552099	-	ZMO1203	-	rRNA methylase
1204	 42.05	0	1227843..1228037	-	64	56552100	-	ZMO1204	-	hypothetical protein
1205	 43.08	0	1228091..1228408	-	105	56552101	-	ZMO1205	-	hypothetical protein
1206	 46.58	0	1228898..1229848	-	316	56552102	-	ZMO1206	-	transcriptional regulator
1207	 48.48	0	1229918..1230907	+	329	56552103	-	ZMO1207	-	nitrilase
1208	 40.67	-1	1231254..1231580	-	108	56552104	-	ZMO1208	-	hypothetical protein
1209	 49.92	0	1231838..1233796	-	652	56552105	kup	ZMO1209	-	K+ transporter
1210	 39.84	-1	1233845..1234090	-	81	56552106	-	ZMO1210	-	hypothetical protein
1211	 50.19	0	1234263..1235609	-	448	56552107	gor	ZMO1211	-	pyruvate/2-oxoglutarate dehydrogenase complex
1212	 50.66	0	1235772..1237295	-	507	56552108	pgi	ZMO1212	-	glucose-6-phosphate isomerase
1213	 51.40	0	1237660..1238052	+	130	56552109	-	ZMO1213	-	hypothetical protein
1214	 50.17	0	1238222..1239700	+	492	56552110	-	ZMO1214	-	DNA and RNA helicase
1215	 46.95	0	1240045..1240257	+	70	56552111	-	ZMO1215	-	hypothetical protein
1216	 44.89	0	1240284..1241936	+	550	56552112	-	ZMO1216	-	two-component signal transduction histidine kinase
1217	 42.82	0	1242240..1242629	-	129	56552113	-	ZMO1217	-	hypothetical protein
1218	 50.32	0	1243598..1244386	-	262	56552114	tatC	ZMO1218	-	Sec-independent protein secretion pathway component
1219	 52.51	+1	1244383..1244841	-	152	56552115	tatB	ZMO1219	-	Sec-independent protein secretion pathway component
1220	 48.48	0	1244926..1245189	-	87	56552116	tatA	ZMO1220	-	Sec-independent protein secretion pathway component
1221	 51.99	+1	1245342..1246043	-	233	56552117	-	ZMO1221	-	hypothetical protein
1222	 51.49	0	1246156..1246893	-	245	56552118	-	ZMO1222	-	dehydrogenase
1223	 52.99	+1	1246963..1247898	-	311	56552119	fabD	ZMO1223	-	acyl-carrier-protein S-malonyltransferase
1224	 39.26	-1	1247925..1248059	+	44	56552120	-	ZMO1224	-	hypothetical protein
1225	 53.60	+1	1248419..1248793	+	124	56552121	rpsF	ZMO1225	-	30S ribosomal protein S6
1226	 52.44	+1	1248814..1249038	+	74	56552122	rpsR	ZMO1226	-	30S ribosomal protein S18
1227	 48.89	0	1249053..1249682	+	209	56552123	rplI	ZMO1227	-	50S ribosomal protein L9
1228	 51.10	0	1249762..1250757	-	331	56552124	ykfB	ZMO1228	-	mandelate racemase
1229	 48.87	0	1250845..1251507	-	220	56552125	folE	ZMO1229	-	GTP cyclohydrolase I
1230	 42.62	0	1251496..1251678	+	60	56552126	-	ZMO1230	-	hypothetical protein
1231	 50.00	0	1251782..1253359	+	525	56552127	recJ	ZMO1231	-	single-stranded DNA-specific exonuclease
1232	 38.46	-1	1253711..1255036	+	441	56552128	-	ZMO1232	-	glycosyltransferase
1233	 46.92	0	1255086..1256498	-	470	56552129	pmi	ZMO1233	-	mannose-6-phosphate isomerase
1234	 52.56	+1	1256550..1258499	-	649	56552130	dxs	ZMO1234	-	1-deoxy-D-xylulose-5-phosphate synthase
1235	 47.53	0	1258677..1259162	-	161	56552131	-	ZMO1235	-	transcriptional regulator
1236	 49.21	0	1259409..1260422	-	337	56552132	adhA	ZMO1236	-	alcohol dehydrogenase
1237	 46.39	0	1261124..1262119	-	331	56552133	ldhA	ZMO1237	-	D-lactate dehydrogenase
1238	 33.33	-2	1262094..1262210	+	38	56552134	-	ZMO1238	-	hypothetical protein
1239	 39.64	-1	1262273..1262383	+	36	56552135	-	ZMO1239	-	hypothetical protein
1240	 50.95	0	1262589..1263275	-	228	56552136	gpm	ZMO1240	-	phosphoglycerate mutase
1241	 44.93	0	1263379..1263516	+	45	56552137	-	ZMO1241	-	hypothetical protein
1242	 49.69	0	1263525..1264667	-	380	56552138	-	ZMO1242	-	carboxypeptidase
1243	 55.23	+1	1264664..1265476	-	270	56552139	-	ZMO1243	-	hypothetical protein
1244	 32.54	-2	1265495..1265620	+	41	56552140	-	ZMO1244	-	hypothetical protein
1245	 34.06	-2	1265601..1265738	+	45	56552141	-	ZMO1245	-	hypothetical protein
1246	 51.59	0	1265756..1265881	+	41	56552142	-	ZMO1246	-	ribosomal protein L36
1247	 47.15	0	1266432..1266554	+	40	56552143	-	ZMO1247	-	hypothetical protein
1248	 48.06	0	1266591..1267079	-	162	56552144	-	ZMO1248	-	hypothetical protein
1249	 42.86	0	1267369..1267620	-	83	56552145	-	ZMO1249	-	hypothetical protein
1250	 42.33	0	1267757..1267945	-	62	56552146	-	ZMO1250	-	hypothetical protein
1251	 50.10	0	1268042..1268530	-	162	56552147	-	ZMO1251	-	hypothetical protein
1252	 52.02	+1	1268562..1269203	-	213	56552148	-	ZMO1252	-	cytochrome c biogenesis factor
1253	 49.18	0	1269200..1269628	-	142	56552149	-	ZMO1253	-	cytochrome c biogenesis protein
1254	 49.89	0	1269625..1270065	-	146	56552150	-	ZMO1254	-	cytochrome c biogenesis protein
1255	 50.39	0	1270152..1272098	-	648	56552151	cycK	ZMO1255	-	cytochrome c biogenesis factor
1256	 54.65	+1	1272100..1272540	-	146	56552152	cycJ	ZMO1256	-	cytochrome c biogenesis protein
1257	 49.09	0	1272564..1272728	-	54	56552153	-	ZMO1257	-	hypothetical protein
1258	 48.54	0	1272725..1273441	-	238	56552154	cycZ	ZMO1258	-	ABC-type transport system heme exporter
1259	 35.66	-2	1273598..1273726	+	42	56552155	-	ZMO1259	-	hypothetical protein
1260	 43.28	0	1274039..1276291	+	750	56552156	-	ZMO1260	-	TonB-dependent receptor
1261	 41.74	0	1276477..1277535	+	352	56552157	ssuA	ZMO1261	-	ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic components
1262	 41.85	0	1277480..1278313	+	277	56552158	ssuC	ZMO1262	-	ABC-type nitrate/sulfonate/bicarbonate transport system permease component
1263	 42.88	0	1278314..1279036	+	240	56552159	ssuB	ZMO1263	-	ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component
1264	 44.42	0	1279074..1280255	+	393	56552160	rspA	ZMO1264	-	putative mandelate racemase
1265	 43.99	0	1280266..1280922	+	218	56552161	-	ZMO1265	-	metal-binding protein
1266	 42.01	0	1280950..1281168	+	72	56552162	-	ZMO1266	-	hypothetical protein
1267	 49.72	0	1281143..1282723	+	526	56552163	guaA	ZMO1267	-	bifunctional GMP synthase/glutamine amidotransferase protein
1268	 49.14	0	1282800..1283843	-	347	56552164	-	ZMO1268	-	hypothetical protein
1269	 41.27	0	1284042..1284419	-	125	56552165	-	ZMO1269	-	hypothetical protein
1270	 48.68	0	1284395..1285606	+	403	56552166	-	ZMO1270	-	serine palmitoyltransferase
46.43	MEAN

5.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.