IslandPath Analysis: Yersinia pestis Pestoides F



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.06   STD DEV: 4.80
Yersinia pestis Pestoides F, complete genome - 1..4517345
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
872	 47.44	0	1021670..1022980	-	436	145598195	-	YPDSF_0898	-	integral membrane protein
873	 50.28	0	1023639..1025573	+	644	145598196	-	YPDSF_0899	-	exoribonuclease II
874	 50.12	0	1025923..1027989	+	688	145598197	-	YPDSF_0900	-	carbon starvation protein A
875	 56.36	+1	1027958..1028287	+	109	145598198	-	YPDSF_0901	-	hypothetical protein
876	 49.56	0	1028404..1029192	-	262	145598199	-	YPDSF_0902	-	fructose-6-phosphate aldolase
877	 42.57	-1	1029403..1029651	+	82	145598200	-	YPDSF_0903	-	hypothetical protein
878	 49.86	0	1029680..1030375	-	231	145598201	araD	YPDSF_0904	-	L-ribulose-5-phosphate 4-epimerase
879	 52.05	0	1030855..1031073	+	72	145598202	-	YPDSF_0905	-	osmotically inducible lipoprotein B precursor
880	 47.71	0	1031288..1031614	-	108	145598203	-	YPDSF_0906	-	translation initiation factor Sui1
881	 52.17	0	1031614..1032351	-	245	145598204	-	YPDSF_0907	-	orotidine 5'-phosphate decarboxylase
882	 38.00	-2	1032821..1033120	+	99	145598205	-	YPDSF_0908	-	hypothetical protein
883	 48.89	0	1033242..1034411	-	389	145598206	-	YPDSF_0909	-	hypothetical protein
884	 46.47	0	1034418..1034729	-	103	145598207	-	YPDSF_0910	-	hypothetical protein
885	 49.48	0	1034898..1035659	-	253	145598208	-	YPDSF_0911	-	phosphatidylglycerophosphatase B
886	 46.60	0	1036153..1036755	+	200	145598209	ribA	YPDSF_0912	-	GTP cyclohydrolase II
887	 48.90	0	1036919..1039591	-	890	145598210	-	YPDSF_0913	-	aconitate hydratase
888	 34.27	-2	1039955..1040812	-	285	145598211	-	YPDSF_0914	-	hypothetical protein
889	 46.56	0	1041148..1042122	-	324	145598212	cysB	YPDSF_0915	-	transcriptional regulator CysB
890	 45.97	0	1042542..1043000	-	152	145598213	-	YPDSF_0916	-	transposase for the IS1541 insertion element
891	 48.32	0	1043230..1045845	-	871	145598214	-	YPDSF_0917	-	DNA topoisomerase I
892	 40.87	-1	1046264..1046515	+	83	145598215	-	YPDSF_0918	-	hypothetical protein
893	 48.55	0	1046634..1047665	-	343	145598216	-	YPDSF_0919	-	putative periplasmic protease
894	 52.10	0	1047852..1048613	+	253	145598217	-	YPDSF_0920	-	short chain dehydrogenase
895	 49.61	0	1048576..1049220	+	214	145598218	-	YPDSF_0921	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
896	 51.01	0	1049343..1050377	-	344	145598219	-	YPDSF_0922	-	23S rRNA pseudouridylate synthase B
897	 46.05	0	1050724..1051344	-	206	145598220	-	YPDSF_0923	-	hypothetical protein
898	 51.82	0	1051361..1052296	-	311	145598221	-	YPDSF_0924	-	hypothetical protein
899	 50.51	0	1052712..1054277	+	521	145598222	-	YPDSF_0925	-	anthranilate synthase component I
900	 51.99	0	1054277..1054855	+	192	145598223	-	YPDSF_0926	-	anthranilate synthase component II
901	 53.25	+1	1054870..1055868	+	332	145598224	trpD	YPDSF_0927	-	anthranilate phosphoribosyltransferase
902	 50.98	0	1055872..1057299	+	475	145598225	-	YPDSF_0928	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
903	 48.95	0	1057456..1058646	+	396	145598226	-	YPDSF_0929	-	tryptophan synthase subunit beta
904	 50.19	0	1058646..1059452	+	268	145598227	trpA	YPDSF_0930	-	tryptophan synthase subunit alpha
905	 37.33	-2	1059466..1059615	+	49	145598228	-	YPDSF_0931	-	hypothetical protein
906	 46.03	0	1059795..1060109	+	104	145598229	-	YPDSF_0932	-	lipoprotein
907	 45.99	0	1060256..1060903	-	215	145598230	-	YPDSF_0933	-	outer membrane protein W
908	 37.50	-2	1061000..1061215	-	71	145598231	-	YPDSF_0934	-	hypothetical protein
909	 45.01	0	1061377..1062147	+	256	145598232	-	YPDSF_0935	-	hypothetical protein
910	 45.53	0	1062268..1062882	-	204	145598233	-	YPDSF_0936	-	sulfate permease family protein
911	 49.22	0	1062914..1063996	-	360	145598234	-	YPDSF_0937	-	hypothetical protein
912	 41.25	-1	1064227..1064769	+	180	145598235	-	YPDSF_0938	-	intracellular septation protein A
913	 47.56	0	1064849..1065298	+	149	145598236	-	YPDSF_0939	-	acyl-CoA thioester hydrolase
914	 49.63	0	1065446..1066654	+	402	145598237	-	YPDSF_0940	-	transposase for the IS285 insertion element
915	 49.28	0	1066690..1067448	-	252	145598238	-	YPDSF_0941	-	transport protein TonB
916	 47.47	0	1067749..1068045	+	98	145598239	-	YPDSF_0942	-	YciI-like protein
917	 39.84	-1	1068268..1068513	+	81	145598240	-	YPDSF_0943	-	hypothetical protein
918	 40.15	-1	1068629..1068892	-	87	145598241	-	YPDSF_0944	-	hypothetical protein
919	 36.43	-2	1069010..1069138	-	42	145598242	-	YPDSF_0945	-	hypothetical protein
920	 42.96	-1	1069113..1069652	-	179	145598243	-	YPDSF_0946	-	attachment invasion locus protein precursor
921	 46.54	0	1070699..1072159	+	486	145598244	cls	YPDSF_0947	-	cardiolipin synthetase
922	 44.35	0	1072294..1072647	+	117	145598245	-	YPDSF_0948	-	dsDNA-mimic protein
923	 34.26	-2	1072946..1073161	-	71	145598246	-	YPDSF_0949	-	hypothetical protein
924	 45.31	0	1073722..1074723	-	333	145598247	-	YPDSF_0950	-	oligopeptide transport ATP-binding protein
925	 46.51	0	1074720..1075721	-	333	145598248	oppD	YPDSF_0951	-	oligopeptide transporter ATP-binding component
926	 47.02	0	1075733..1076638	-	301	145598249	-	YPDSF_0952	-	oligopeptide transport system permease protein
927	 43.87	0	1076657..1077577	-	306	145598250	oppB	YPDSF_0953	-	oligopeptide transporter permease
928	 42.74	-1	1077664..1079301	-	545	145598251	-	YPDSF_0954	-	periplasmic oligopeptide-binding protein precursor
929	 45.27	0	1080138..1080782	-	214	145598252	-	YPDSF_0955	-	hypothetical protein
930	 46.90	0	1081589..1084264	+	891	145598253	-	YPDSF_0956	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
931	 45.85	0	1085015..1085605	-	196	145598254	-	YPDSF_0957	-	thymidine kinase
932	 44.06	0	1086355..1086783	+	142	145598255	-	YPDSF_0958	-	global DNA-binding transcriptional dual regulator H-NS
933	 49.55	0	1086795..1088003	-	402	145598256	-	YPDSF_0959	-	transposase for the IS285 insertion element
934	 42.76	-1	1088520..1089866	-	448	145598257	-	YPDSF_0960	-	nucleotide sugar dehydrogenase
935	 43.85	0	1090173..1091189	-	338	145598258	-	YPDSF_0961	-	response regulator of RpoS
936	 47.53	0	1092523..1092987	+	154	145598259	-	YPDSF_0962	-	hypothetical protein
937	 42.87	-1	1093071..1093919	+	282	145598260	purU	YPDSF_0963	-	formyltetrahydrofolate deformylase
938	 49.55	0	1094556..1095764	+	402	145598261	-	YPDSF_0964	-	transposase for the IS285 insertion element
939	 29.27	-2	1095983..1096843	-	286	145598262	-	YPDSF_0965	-	LysR family transcriptional regulator
940	 47.58	0	1097653..1098459	+	268	145598263	-	YPDSF_0966	-	exonuclease III
941	 54.01	+1	1098557..1098943	+	128	145598264	-	YPDSF_0967	-	pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase
942	 43.64	0	1098956..1099246	-	96	145598265	-	YPDSF_0968	-	hypothetical protein
943	 49.30	0	1099243..1101171	-	642	145598266	-	YPDSF_0969	-	DNA topoisomerase III
944	 47.65	0	1101246..1102160	-	304	145598267	-	YPDSF_0970	-	selenide, water dikinase
945	 50.72	0	1102385..1102936	-	183	145598268	-	YPDSF_0971	-	hypothetical protein
946	 48.03	0	1103099..1104949	+	616	145598269	-	YPDSF_0972	-	protease 4
947	 47.69	0	1105066..1106082	+	338	145598270	ansA	YPDSF_0973	-	cytoplasmic asparaginase I
948	 49.69	0	1106097..1106744	+	215	145598271	-	YPDSF_0974	-	nicotinamidase/pyrazinamidase
949	 44.27	0	1106878..1107252	-	124	145598272	-	YPDSF_0975	-	hypothetical protein
950	 45.41	0	1107221..1107634	-	137	145598273	-	YPDSF_0976	-	methionine sulfoxide reductase B
951	 47.49	0	1107982..1108977	+	331	145598274	-	YPDSF_0977	-	glyceraldehyde 3-phosphate dehydrogenase A
952	 48.17	0	1109291..1110166	+	291	145598275	-	YPDSF_0978	-	hypothetical protein
953	 46.56	0	1110239..1111009	-	256	145598276	-	YPDSF_0979	-	hypothetical protein
954	 45.06	0	1111432..1113366	+	644	145598277	-	YPDSF_0980	-	hypothetical protein
955	 48.00	0	1113516..1114790	+	424	145598278	-	YPDSF_0981	-	hypothetical protein
956	 51.03	0	1114898..1116016	+	372	145598279	-	YPDSF_0982	-	membrane protein
957	 53.53	+1	1116051..1116956	-	301	145598280	-	YPDSF_0983	-	LysR family transcriptional regulator
958	 48.62	0	1117154..1118023	+	289	145598281	-	YPDSF_0984	-	hypothetical protein
959	 50.04	0	1118288..1119490	+	400	145598282	-	YPDSF_0985	-	multidrug resistance protein
960	 52.64	0	1119506..1120810	-	434	145598283	-	YPDSF_0986	-	D-amino acid dehydrogenase small subunit
961	 44.47	0	1121276..1122811	+	511	145598284	-	YPDSF_0987	-	hypothetical protein
962	 46.25	0	1123029..1123748	-	239	145598285	-	YPDSF_0988	-	fatty acid metabolism regulator
963	 46.54	0	1123992..1125566	+	524	145598286	nhaB	YPDSF_0989	-	sodium/proton antiporter
964	 45.79	0	1125787..1126332	+	181	145598287	-	YPDSF_0990	-	disulfide bond formation protein B
965	 43.98	0	1126749..1127105	-	118	145598288	-	YPDSF_0991	-	hypothetical protein
966	 51.82	0	1128197..1128937	+	246	145598289	-	YPDSF_0992	-	hypothetical protein
967	 52.33	0	1128954..1130153	+	399	145598290	-	YPDSF_0993	-	aminotransferase
968	 54.81	+1	1130157..1131101	+	314	145598291	-	YPDSF_0994	-	hypothetical protein
969	 51.92	0	1131174..1131329	+	51	145598292	-	YPDSF_0995	-	hypothetical protein
970	 51.28	0	1131588..1131743	-	51	145598293	-	YPDSF_0996	-	hypothetical protein
971	 41.43	-1	1131740..1132159	-	139	145598294	-	YPDSF_0997	-	phage tail fiber assembly protein
48.06	MEAN

4.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.