IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1000	 62.86	+1	960871..962208	+	445	15837605	-	XF1003	-	argininosuccinate lyase
1001	 64.16	+1	962344..963498	+	384	15837606	-	XF1004	-	gamma-glutamyl kinase
1002	 61.31	+1	963581..965035	+	484	15837607	-	XF1005	-	gamma-glutamyl phosphate reductase
1003	 45.81	-1	965337..965849	+	170	15837608	-	XF1006	-	hypothetical protein
1004	 46.85	0	965867..966310	+	147	15837609	-	XF1007	-	hypothetical protein
1005	 45.44	-1	966351..966854	+	167	15837610	-	XF1008	-	hypothetical protein
1006	 44.62	-1	966932..967321	+	129	15837611	-	XF1009	-	hypothetical protein
1007	 42.75	-1	967332..967841	+	169	15837612	-	XF1010	-	hypothetical protein
1008	 59.09	+1	967865..972775	+	1636	15837613	-	XF1011	-	hemolysin-type calcium binding protein
1009	 62.50	+1	972969..973472	-	167	15837614	-	XF1012	-	hypothetical protein
1010	 57.14	0	973480..973962	-	160	15837615	-	XF1013	-	manganese transport regulator MntR
1011	 47.54	0	973943..974125	+	60	15837616	-	XF1014	-	hypothetical protein
1012	 54.69	0	974127..975545	+	472	15837617	-	XF1015	-	manganese transport protein MntH
1013	 48.48	0	975561..975725	+	54	15837618	-	XF1016	-	hypothetical protein
1014	 45.40	-1	975703..975876	-	57	15837619	-	XF1017	-	hypothetical protein
1015	 57.12	0	976043..976807	-	254	15837620	-	XF1018	-	arginyl-tRNA-protein transferase
1016	 50.00	0	976989..977108	+	39	15837621	-	XF1019	-	hypothetical protein
1017	 52.85	0	977229..977720	-	163	15837622	-	XF1020	-	pathogenicity-related protein
1018	 52.30	0	977724..978656	-	310	15837623	-	XF1021	-	hypothetical protein
1019	 38.74	-2	978685..978795	-	36	15837624	-	XF1022	-	hypothetical protein
1020	 43.54	-1	979234..979380	+	48	15837625	-	XF1023	-	hypothetical protein
1021	 56.92	0	979490..979807	-	105	15837626	-	XF1024	-	outer membrane protein H.8 precursor
1022	 54.43	0	980782..981165	-	127	15837627	-	XF1025	-	hypothetical protein
1023	 56.76	0	980867..983875	+	1002	77747530	-	XF1026	-	serine protease
1024	 45.93	-1	984121..984366	-	81	15837629	-	XF1027	-	hypothetical protein
1025	 47.26	0	984687..984887	-	66	15837630	-	XF1028	-	hypothetical protein
1026	 52.56	0	985119..987110	-	663	15837631	-	XF1029	-	glutaryl-7-ACA acylase precursor
1027	 44.83	-1	987384..987557	+	57	15837632	-	XF1030	-	hypothetical protein
1028	 52.24	0	987747..990359	-	870	15837633	-	XF1031	-	glycerol-3-phosphate acyltransferase
1029	 38.16	-2	990976..991182	-	68	15837634	-	XF1032	-	hypothetical protein
1030	 45.70	-1	991364..991549	+	61	15837635	-	XF1033	-	hypothetical protein
1031	 44.44	-1	991519..991734	+	71	15837636	-	XF1034	-	hypothetical protein
1032	 47.19	0	991854..992156	+	100	15837637	-	XF1035	-	hypothetical protein
1033	 50.78	0	992251..995277	+	1008	15837638	-	XF1036	-	hypothetical protein
1034	 51.14	0	995383..996825	-	480	77747531	-	XF1037	-	S-adenosyl-L-homocysteine hydrolase
1035	 52.84	0	997769..999280	+	503	15837640	-	XF1038	-	peptide synthase
1036	 41.82	-1	999548..999712	+	54	15837641	-	XF1039	-	hypothetical protein
1037	 51.85	0	999729..999890	+	53	15837642	-	XF1040	-	hypothetical protein
1038	 53.90	0	1000079..1000783	-	234	15837643	rnhB	XF1041	-	ribonuclease HII
1039	 54.92	0	1000840..1001997	-	385	15837644	lpxB	XF1042	-	lipid-A-disaccharide synthase
1040	 52.78	0	1002074..1002865	-	263	15837645	-	XF1043	-	UDP-N-acetylglucosamine acyltransferase
1041	 49.07	0	1002887..1003369	-	160	15837646	fabZ	XF1044	-	(3R)-hydroxymyristoyl-ACP dehydratase
1042	 53.52	0	1003366..1004430	-	354	15837647	lpxD	XF1045	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1043	 50.57	0	1004577..1006931	-	784	15837648	-	XF1046	-	outer membrane antigen
1044	 53.41	0	1007030..1008334	-	434	15837649	-	XF1047	-	hypothetical protein
1045	 56.84	0	1008391..1009581	-	396	15837650	-	XF1048	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1046	 53.22	0	1009584..1010438	-	284	15837651	-	XF1049	-	phosphatidate cytidylyltransferase
1047	 54.69	0	1010435..1011202	-	255	15837652	-	XF1050	-	undecaprenyl pyrophosphate synthetase
1048	 50.36	0	1011205..1011762	-	185	15837653	frr	XF1051	-	ribosome recycling factor
1049	 47.92	0	1011927..1012166	-	79	15837654	-	XF1052	-	hypothetical protein
1050	 51.49	0	1012513..1013856	-	447	15837655	-	XF1053	-	outer membrane protein
1051	 53.36	0	1014069..1014767	+	232	15837656	-	XF1054	-	hypothetical protein
1052	 46.42	0	1014879..1015199	+	106	15837657	-	XF1055	-	hypothetical protein
1053	 46.91	0	1015455..1015778	-	107	15837658	-	XF1056	-	hypothetical protein
1054	 47.52	0	1016078..1016380	+	100	15837659	-	XF1057	-	hypothetical protein
1055	 52.02	0	1016409..1017152	-	247	15837660	pyrH	XF1058	-	uridylate kinase
1056	 47.80	0	1017134..1017292	+	52	15837661	-	XF1059	-	hypothetical protein
1057	 52.63	0	1017524..1017751	-	75	15837662	-	XF1060	-	hypothetical protein
1058	 56.52	0	1018527..1019186	-	219	15837663	-	XF1061	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1059	 60.70	+1	1019284..1021176	-	630	15837664	-	XF1062	-	phosphogluconate dehydratase
1060	 58.33	0	1021316..1022035	-	239	15837665	-	XF1063	-	6-phosphogluconolactonase
1061	 58.09	0	1022032..1023045	-	337	15837666	glk	XF1064	-	glucokinase
1062	 56.90	0	1023042..1024475	-	477	15837667	-	XF1065	-	glucose-6-phosphate 1-dehydrogenase
1063	 53.57	0	1024499..1024666	-	55	15837668	-	XF1066	-	hypothetical protein
1064	 54.34	0	1024805..1025899	+	364	15837669	-	XF1067	-	sugar ABC transporter ATP-binding protein
1065	 55.66	0	1026044..1026961	-	305	15837670	-	XF1068	-	hypothetical protein
1066	 48.40	0	1027157..1027375	+	72	15837671	-	XF1069	-	hypothetical protein
1067	 53.38	0	1027400..1027828	+	142	15837672	-	XF1070	-	succinate dehydrogenase, membrane anchor subunit
1068	 52.34	0	1027825..1028208	+	127	15837673	-	XF1071	-	succinate dehydrogenase, membrane anchor subunit
1069	 52.76	0	1028216..1030006	+	596	15837674	sdhA	XF1072	-	succinate dehydrogenase flavoprotein subunit
1070	 50.76	0	1030027..1030812	+	261	15837675	sdhB	XF1073	-	succinate dehydrogenase iron-sulfur subunit
1071	 54.08	0	1030888..1031181	+	97	15837676	-	XF1074	-	hypothetical protein
1072	 54.95	0	1031201..1031584	+	127	15837677	-	XF1075	-	hypothetical protein
1073	 53.54	0	1031610..1032851	+	413	15837678	-	XF1076	-	hypothetical protein
1074	 53.51	0	1032883..1033566	+	227	15837679	-	XF1077	-	ABC transporter ATP-binding protein
1075	 56.79	0	1033882..1036392	+	836	15837680	-	XF1078	-	DNA uptake protein
1076	 50.83	0	1036377..1037039	+	220	15837681	-	XF1079	-	hypothetical protein
1077	 50.91	0	1037044..1037481	+	145	15837682	-	XF1080	-	hypothetical protein
1078	 53.33	0	1037478..1039247	+	589	15837683	-	XF1081	-	ABC transporter ATP-binding protein
1079	 55.20	0	1039244..1040263	+	339	15837684	lpxK	XF1082	-	tetraacyldisaccharide 4'-kinase
1080	 48.59	0	1040487..1040663	-	58	15837685	-	XF1083	-	hypothetical protein
1081	 55.76	0	1040909..1041550	+	213	15837686	-	XF1084	-	partition protein
1082	 56.04	0	1041567..1042046	+	159	15837687	-	XF1085	-	hypothetical protein
1083	 52.53	0	1042066..1042638	+	190	15837688	-	XF1086	-	hypothetical protein
1084	 50.94	0	1042635..1044593	+	652	15837689	-	XF1087	-	cardiolipin synthase
1085	 28.57	-2	1044771..1044980	-	69	15837690	-	XF1088	-	hypothetical protein
1086	 41.36	-1	1045293..1045454	-	53	15837691	-	XF1089	-	hypothetical protein
1087	 46.47	0	1045600..1046010	-	136	15837692	-	XF1090	-	hypothetical protein
1088	 50.95	0	1046397..1046765	-	122	15837693	-	XF1091	-	hypothetical protein
1089	 52.94	0	1046845..1047048	-	67	15837694	-	XF1092	-	hypothetical protein
1090	 49.18	0	1047305..1047790	-	161	15837695	-	XF1093	-	hypothetical protein
1091	 58.00	0	1048033..1048632	-	199	15837696	-	XF1094	-	tryptophan repressor binding protein
1092	 43.40	-1	1048846..1049004	+	52	15837697	-	XF1095	-	hypothetical protein
1093	 53.59	0	1049034..1049186	+	50	15837698	-	XF1096	-	hypothetical protein
1094	 50.80	0	1049206..1050390	+	394	15837699	-	XF1097	-	nicotinate phosphoribosyltransferase
1095	 39.17	-2	1050443..1050562	+	39	15837700	-	XF1098	-	hypothetical protein
1096	 55.90	0	1050579..1051154	-	191	15837701	-	XF1099	-	hypothetical protein
1097	 40.09	-1	1051550..1051771	+	73	15837702	-	XF1100	-	hypothetical protein
1098	 42.77	-1	1052097..1052255	+	52	15837703	-	XF1101	-	hypothetical protein
1099	 48.98	0	1052533..1052826	-	97	15837704	-	XF1102	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.