IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
920	 68.95	+1	1060076..1060732	+	218	122879064	-	XOO1040	-	hypothetical protein
921	 64.46	0	1060760..1061212	+	150	58580664	rnhA	XOO1041	-	ribonuclease H
922	 63.13	0	1061221..1061955	+	244	58580665	dnaQ	XOO1042	-	DNA polymerase III subunit epsilon
923	 55.03	-2	1062444..1062890	-	148	58580667	-	XOO1044	-	transposase
924	 65.53	0	1063207..1063911	-	234	122879065	-	XOO1045	-	protein phosphatase
925	 61.23	0	1065884..1066159	+	91	58580669	-	XOO1046	-	site-specific DNA methylase
926	 64.91	0	1066288..1066458	+	56	121632049	-	XOO4739	-	hypothetical protein
927	 68.28	+1	1066854..1069577	+	907	58580670	-	XOO1047	-	Vgr-related protein
928	 64.38	0	1069519..1071795	+	758	58580671	-	XOO1048	-	hypothetical protein
929	 60.53	0	1071792..1073486	+	564	58580672	-	XOO1049	-	hypothetical protein
930	 63.58	0	1073806..1076010	+	734	58580673	-	XOO1050	-	hypothetical protein
931	 60.94	0	1076007..1077701	+	564	122879066	-	XOO1051	-	hypothetical protein
932	 62.37	0	1078023..1078580	+	185	58580675	-	XOO1052	-	hypothetical protein
933	 63.30	0	1078682..1079632	+	316	58580676	-	XOO1053	-	transposase
934	 60.85	0	1079731..1080486	-	251	58580677	-	XOO1054	-	integrase
935	 61.23	0	1080528..1080932	+	134	58580678	-	XOO1055	-	hypothetical protein
936	 67.24	0	1081143..1082192	-	349	58580679	opsX	XOO1056	-	saccharide biosynthesis regulatory protein
937	 65.60	0	1082213..1082962	+	249	58580680	-	XOO1057	-	3-deoxy-D-manno-octulosonic-acid kinase
938	 66.27	0	1082962..1083711	+	249	58580681	-	XOO1058	-	hypothetical protein
939	 65.50	0	1083711..1084742	+	343	58580682	moaA	XOO1059	-	molybdenum cofactor biosynthesis protein A
940	 63.33	0	1084760..1085119	+	119	58580683	-	XOO1060	-	hypothetical protein
941	 63.98	0	1085120..1085641	+	173	58580684	moaC	XOO1061	-	molybdenum cofactor biosynthesis protein C
942	 66.26	0	1085638..1085883	+	81	58580685	moaD	XOO1062	-	molybdopterin-converting factor chain 1
943	 64.65	0	1085880..1086326	+	148	58580686	moaE	XOO1063	-	molybdopterin-converting factor chain 2
944	 66.67	0	1086888..1088984	+	698	58580687	dnaX	XOO1064	-	DNA polymerase III subunits gamma and tau
945	 62.93	0	1088991..1089311	+	106	58580688	-	XOO1065	-	hypothetical protein
946	 66.84	0	1089409..1090002	+	197	58580689	recR	XOO1066	-	recombination protein RecR
947	 60.75	0	1089999..1090454	+	151	58580690	-	XOO1067	-	histidine triad protein homolog (HIT-like protein)
948	 66.10	0	1090574..1091107	-	177	58580691	slp	XOO1068	-	outer membrane protein Slp
949	 66.77	0	1091104..1093056	-	650	58580692	-	XOO1069	-	hypothetical protein
950	 67.61	+1	1093049..1094005	-	318	58580693	-	XOO1070	-	hypothetical protein
951	 65.61	0	1094011..1095051	-	346	58580694	moxR	XOO1071	-	methanol dehydrogenase regulator
952	 65.60	0	1094991..1096871	+	626	58580695	-	XOO1072	-	hypothetical protein
953	 64.18	0	1097865..1098065	+	66	58580697	arsC	XOO1074	-	arsenate reductase
954	 59.00	-1	1098264..1098902	+	212	58580698	def	XOO1075	-	peptide deformylase
955	 61.79	0	1099419..1100177	+	252	58580699	celS	XOO1076	-	cellulase S
956	 59.22	-1	1100605..1101396	+	263	122879067	-	XOO1077	-	cellulase S
957	 62.50	0	1102013..1103716	-	567	58580701	rhgB	XOO1078	-	rhamnogalacturonase B
958	 61.83	0	1103975..1104160	-	61	58580702	-	XOO1079	-	hypothetical protein
959	 59.85	-1	1104170..1104301	-	43	58580703	-	XOO1080	-	hypothetical protein
960	 55.07	-2	1105876..1106556	-	226	58580707	-	XOO1084	-	hypothetical protein
961	 59.95	-1	1106667..1107098	-	143	58580708	-	XOO1085	-	putative transposase
962	 61.96	0	1107111..1107641	-	176	58580709	-	XOO1086	-	putative transposase
963	 54.63	-2	1107693..1108124	-	143	58580710	-	XOO1087	-	hypothetical protein
964	 62.50	0	1108430..1109605	+	391	58580711	-	XOO1088	-	putative ISXo8 transposase
965	 58.68	-1	1109574..1109861	+	95	58580712	-	XOO1089	-	putative ISXo8 transposase
966	 66.24	0	1110572..1111498	-	308	58580713	-	XOO1090	-	glutaredoxin-like protein
967	 69.76	+1	1111559..1112335	+	258	122879068	nodB	XOO1091	-	acetylxylan esterase
968	 65.52	0	1112637..1113332	-	231	58580715	-	XOO1092	-	hypothetical protein
969	 64.95	0	1113631..1114272	-	213	58580716	-	XOO1093	-	hypothetical protein
970	 65.41	0	1114269..1115540	-	423	122879069	aspC	XOO1094	-	aminotransferase AlaT
971	 67.22	0	1115694..1116785	+	363	58580718	-	XOO1095	-	ribosome-associated GTPase
972	 65.24	0	1116785..1118047	+	420	58580719	-	XOO1096	-	hypothetical protein
973	 62.86	0	1118119..1118880	+	253	58580720	nonF	XOO1097	-	NonF-related protein
974	 63.99	0	1119047..1121065	-	672	58580721	-	XOO1098	-	amylosucrase or alpha amylase
975	 63.68	0	1120998..1123304	-	768	58580722	fyuA	XOO1099	-	TonB-dependent receptor
976	 63.69	0	1123565..1125043	+	492	58580723	suc1	XOO1100	-	sugar transporter
977	 65.77	0	1125284..1126504	-	406	58580724	cebR	XOO1101	-	transcriptional regulator
978	 62.45	0	1126556..1127362	-	268	58580725	fabG	XOO1102	-	3-ketoacyl-(acyl-carrier-protein) reductase
979	 62.68	0	1127408..1128736	-	442	122879070	citM	XOO1103	-	Mg++/citrate complex transporter
980	 60.87	0	1128964..1130205	-	413	58580727	oprO	XOO1104	-	porin O
981	 63.53	0	1130221..1131114	+	297	58580728	tctD	XOO1105	-	two-component system regulatory protein
982	 65.63	0	1131050..1132492	+	480	58580729	tctE	XOO1106	-	two-component system sensor protein
983	 66.51	0	1133582..1134220	+	212	58580732	-	XOO1109	-	LuxR/UhpA family transcriptional regulator
984	 66.41	0	1134351..1134734	-	127	121632050	-	XOO4740	-	hypothetical protein
985	 68.42	+1	1134421..1135275	-	284	58580733	-	XOO1110	-	hypothetical protein
986	 66.67	0	1135272..1136090	-	272	58580734	mocA	XOO1111	-	rhizopine catabolism protein mocA
987	 62.57	0	1136219..1137121	+	300	58580735	ybhD	XOO1112	-	transcriptional regulator
988	 65.79	0	1136800..1137027	-	75	121632051	-	XOO4741	-	hypothetical protein
989	 64.36	0	1137113..1137892	-	259	58580736	-	XOO1113	-	hypothetical protein
990	 60.69	0	1137889..1139328	-	479	58580737	cit1	XOO1114	-	citrate carrier protein
991	 67.12	0	1139554..1142199	-	881	58580738	-	XOO1115	-	sensor histidine kinase
992	 64.31	0	1142521..1143792	-	423	58580739	oprO	XOO1116	-	polyphosphate-selective porin O
993	 63.72	0	1143933..1145357	+	474	58580740	dctA	XOO1117	-	C4-dicarboxylate transporter DctA
994	 65.28	0	1145555..1147864	+	769	122879071	maeB	XOO1118	-	malic enzyme
995	 63.42	0	1148709..1149695	+	328	58580742	-	XOO1119	-	IS1404 transposase
996	 64.71	0	1149875..1150843	+	322	58580744	-	XOO1121	-	hypothetical protein
997	 63.75	0	1150795..1151034	-	79	121632052	-	XOO4742	-	putative transposase
998	 67.71	+1	1151125..1151796	-	223	58580746	thiE	XOO1123	-	thiamine-phosphate pyrophosphorylase
999	 60.83	0	1151772..1152011	+	79	58580747	rubA	XOO1124	-	rubredoxin
1000	 64.97	0	1152061..1152942	-	293	58580748	-	XOO1125	-	hypothetical protein
1001	 64.60	0	1153092..1153574	-	160	58580749	-	XOO1126	-	hypothetical protein
1002	 65.43	0	1153692..1154339	-	215	122879072	rpiA	XOO1127	-	ribose-5-phosphate isomerase A
1003	 60.72	0	1154431..1154901	-	156