IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3548	 66.43	0	4250170..4250598	-	142	58583599	-	XOO3976	-	hypothetical protein
3549	 59.70	-1	4250582..4250782	-	66	58583600	-	XOO3977	-	hypothetical protein
3550	 62.77	0	4250869..4251279	-	136	58583601	-	XOO3978	-	IS1478 transposase
3551	 63.60	0	4251252..4251707	-	151	58583602	codA	XOO3979	-	cytosine deaminase
3552	 65.49	0	4251704..4252297	-	197	58583603	-	XOO3980	-	hypothetical protein
3553	 63.11	0	4252574..4253305	-	243	58583605	tISRso5	XOO3982	-	ISRSO5-transposase protein
3554	 66.39	0	4253455..4254531	-	358	122879307	-	XOO3983	-	multidrug resistance efflux pump
3555	 61.42	0	4256237..4257037	+	266	58583610	ubiE	XOO3987	-	ubiquinone/menaquinone biosynthesis methyltransferase
3556	 64.39	0	4257135..4258100	+	321	58583611	-	XOO3988	-	response regulator
3557	 63.63	0	4258162..4260234	+	690	58583612	pepN	XOO3989	-	aminopeptidase
3558	 63.99	0	4260304..4261125	+	273	58583613	-	XOO3990	-	hypothetical protein
3559	 65.54	0	4261425..4262048	+	207	58583614	-	XOO3991	-	hypothetical protein
3560	 60.67	0	4262222..4263589	-	455	58583615	hslU	XOO3992	-	ATP-dependent protease ATP-binding subunit
3561	 63.04	0	4263700..4264251	-	183	122879308	hslV	XOO3993	-	ATP-dependent protease peptidase subunit
3562	 63.12	0	4264767..4265810	-	347	58583617	xerC	XOO3994	-	site-specific tyrosine recombinase XerC
3563	 64.46	0	4265884..4266564	-	226	58583619	-	XOO3996	-	hypothetical protein
3564	 67.13	0	4266552..4267406	-	284	161898962	dapF	XOO3997	-	diaminopimelate epimerase
3565	 66.67	0	4267690..4268124	-	144	58583621	-	XOO3998	-	hypothetical protein
3566	 61.06	0	4268464..4270674	-	736	58583622	ptrB	XOO3999	-	protease II; oligopeptidase B
3567	 63.47	0	4270687..4271907	+	406	58583623	aspC	XOO4000	-	hypothetical protein
3568	 53.46	-2	4271996..4272154	-	52	58583624	-	XOO4001	-	hypothetical protein
3569	 63.03	0	4272747..4274918	-	723	58583625	-	XOO4002	-	prolyl oligopeptidase
3570	 70.50	+1	4274908..4275246	-	112	58583626	-	XOO4003	-	hypothetical protein
3571	 62.98	0	4275607..4276176	+	189	122879309	-	XOO4004	-	outer membrane lipoprotein
3572	 63.25	0	4276285..4277250	-	321	58583628	-	XOO4005	-	hypothetical protein
3573	 63.92	0	4277809..4278609	+	266	58583629	-	XOO4006	-	hypothetical protein
3574	 68.63	+1	4279160..4280074	-	304	58583630	hemC	XOO4007	-	porphobilinogen deaminase
3575	 66.94	0	4280105..4280842	-	245	58583631	algR	XOO4008	-	two-component system regulatory protein
3576	 69.61	+1	4280873..4281925	-	350	58583632	algZ	XOO4009	-	two-component system sensor protein
3577	 68.31	+1	4281930..4282598	-	222	58583633	-	XOO4010	-	carboxylesterase
3578	 66.41	0	4282750..4284687	-	645	122879310	hrpM	XOO4011	-	glucosyltransferase MdoH
3579	 54.59	-2	4285387..4285833	+	148	58583635	-	XOO4012	-	transposase
3580	 65.09	0	4286491..4288140	-	549	58583638	-	XOO4015	-	aminopeptidase
3581	 64.97	0	4289531..4291060	-	509	58583641	ybaR	XOO4018	-	sulfate permease
3582	 61.15	0	4291226..4292674	+	482	122879311	engXCA	XOO4019	-	cellulase
3583	 65.79	0	4293156..4293383	+	75	58583643	tsr	XOO4020	-	chemotaxis protein
3584	 65.85	0	4293909..4296722	-	937	58583644	-	XOO4021	-	histidine kinase-response regulator hybrid protein
3585	 65.76	0	4296788..4299658	+	956	58583645	-	XOO4022	-	zinc protease
3586	 65.27	0	4300062..4301135	+	357	58583646	phS	XOO4023	-	histidine kinase-response regulator hybrid protein
3587	 66.49	0	4301174..4302310	-	378	58583647	-	XOO4024	-	hypothetical protein
3588	 54.81	-2	4302765..4303211	-	148	58583649	-	XOO4026	-	transposase
3589	 56.91	-1	4303858..4303980	-	40	58583650	-	XOO4027	-	endonuclease
3590	 69.13	+1	4304166..4305017	+	283	58583652	-	XOO4029	-	hypothetical protein
3591	 66.25	0	4305271..4306944	+	557	122879312	treA	XOO4030	-	trehalase
3592	 68.07	+1	4308656..4308940	+	94	58583654	-	XOO4031	-	hypothetical protein
3593	 63.05	0	4309144..4310055	-	303	58583655	corA	XOO4032	-	magnesium and cobalt transport protein
3594	 60.67	0	4310430..4311296	+	288	122879313	-	XOO4033	-	hypothetical protein
3595	 60.57	0	4311390..4312766	-	458	122879314	cycA	XOO4034	-	D-alanine/D-serine/glycine permease
3596	 61.38	0	4313933..4315633	+	566	122879315	-	XOO4035	-	1,4-beta-cellobiosidase
3597	 62.89	0	4316042..4317814	+	590	58583659	-	XOO4036	-	cellulase
3598	 61.94	0	4318090..4319019	-	309	58583660	-	XOO4037	-	hypothetical protein
3599	 65.80	0	4319001..4320041	+	346	58583661	-	XOO4038	-	hypothetical protein
3600	 66.17	0	4320133..4320735	+	200	121632131	-	XOO4922	-	hypothetical protein
3601	 58.48	-1	4321364..4321705	+	113	58583663	-	XOO4040	-	ISRSO5-transposase protein
3602	 67.77	+1	4322081..4323172	+	363	58583665	-	XOO4042	-	hypothetical protein
3603	 62.79	0	4323955..4324341	-	128	121632132	-	YXOOp14	-	hypothetical protein
3604	 63.31	0	4324299..4324655	-	118	121632133	-	YXOOp15	-	hypothetical protein
3605	 64.42	0	4325087..4327399	+	770	122879316	-	XOO4043	-	dipeptidyl peptidase IV
3606	 63.12	0	4327595..4329541	-	648	58583667	-	XOO4044	-	prolyl oligopeptidase family protein
3607	 63.11	0	4329799..4330107	+	102	58583668	-	XOO4045	-	hypothetical protein
3608	 64.14	0	4330498..4332081	+	527	58583669	-	XOO4046	-	oxidoreductase
3609	 63.65	0	4333283..4334209	-	308	58583670	-	XOO4047	-	IS1404 transposase
3610	 57.95	-1	4334062..4334325	-	87	121632134	-	XOO4927	-	IS1404 transposase
3611	 64.69	0	4334374..4335282	-	302	58583671	-	XOO4048	-	threonine aldolase
3612	 64.50	0	4335257..4336777	-	506	58583672	trpE	XOO4049	-	anthranilate synthase component I
3613	 69.57	+1	4337393..4338322	-	309	58583673	-	XOO4050	-	lipid kinase
3614	 67.48	+1	4338557..4339048	-	163	58583674	-	XOO4051	-	N-acetyltransferase
3615	 63.69	0	4339045..4339716	-	223	122879317	rpe	XOO4052	-	ribulose-phosphate 3-epimerase
3616	 67.54	+1	4340111..4340566	-	151	58583676	-	XOO4053	-	hypothetical protein
3617	 63.45	0	4340643..4341575	+	310	58583677	purC	XOO4054	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3618	 58.91	-1	4342364..4342840	-	158	58583678	-	XOO4055	-	putative transposase
3619	 58.33	-1	4342806..4343177	-	123	58583679	-	XOO4056	-	putative transposase
3620	 65.51	0	4343310..4344347	-	345	58583680	-	XOO4057	-	putative transposase
3621	 55.29	-2	4344440..4344694	+	84	58583681	-	XOO4058	-	hypothetical protein
3622	 62.85	0	4344697..4345089	+	130	58583682	-	XOO4059	-	lytic enzyme
3623	 60.48	0	4346015..4346839	+	274	58583683	-	XOO4060	-	metalloproteinase
3624	 69.33	+1	4346846..4347070	+	74	58583684	-	XOO4061	-	metalloproteinase
3625	 61.40	0	4347185..4347697	+	170	58583685	-	XOO4062	-	hypothetical protein
3626	 70.06	+1	4347723..4348076	-	117	58583686	-	XOO4063	-	hypothetical protein
3627	 63.34	0	4348236..4351064	+	942	58583687	ndhF	XOO4064	-	putative monovalent cation/H+ antiporter subunit A
3628	 61.38	0	4351061..4351438	+	125	58583688	phaC	XOO4065	-	putative monovalent cation/H+ antiporter subunit C
3629	 65.70	0	4351435..4352979	+	514	58583689	phaD	XOO4066	-	putative monovalent cation/H+ antiporter subunit D
3630	 61.93	0	4352976..4353482	+	168	58583690	phaE	XOO4067	-	putative monovalent cation/H+ antiporter subunit E
3631	 60.70	0	4353479..4353763