IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3043	 65.08	0	3631362..3632558	+	398	58583028	-	XOO3405	-	sensor histidine kinase
3044	 63.83	0	3633629..3633910	-	93	58583029	-	XOO3406	-	hypothetical protein
3045	 66.67	0	3633921..3634904	-	327	58583030	cysB	XOO3407	-	transcriptional regulator CysB-like protein
3046	 71.31	+2	3635073..3636278	+	401	58583031	cysG	XOO3408	-	siroheme synthase
3047	 66.67	0	3636295..3637254	+	319	58583032	cysK	XOO3409	-	cysteine synthase
3048	 64.89	0	3637554..3638060	+	168	58583033	-	XOO3410	-	hypothetical protein
3049	 61.22	0	3638208..3638795	+	195	58583034	-	XOO3411	-	hypothetical protein
3050	 62.99	0	3638997..3640001	-	334	122879255	-	XOO3412	-	fructose-bisphosphate aldolase
3051	 64.10	0	3640584..3642140	-	518	58583036	pykA	XOO3413	-	pyruvate kinase
3052	 65.12	0	3642307..3642951	-	214	58583037	idgB	XOO3414	-	indigoidine synthesis-like protein
3053	 65.56	0	3642948..3644123	-	391	58583038	pgk	XOO3415	-	phosphoglycerate kinase
3054	 69.07	+1	3644457..3645911	-	484	58583039	-	XOO3416	-	hypothetical protein
3055	 66.01	0	3645812..3648835	-	1007	58583040	-	XOO3417	-	hypothetical protein
3056	 66.09	0	3650446..3650619	+	57	58583045	-	XOO3422	-	oxidoreductase
3057	 60.73	0	3650837..3652942	+	701	122879256	katE	XOO3423	-	catalase
3058	 60.36	0	3653216..3655006	+	596	58583047	-	XOO3424	-	hypothetical protein
3059	 59.87	-1	3655234..3657366	-	710	58583048	-	XOO3425	-	hypothetical protein
3060	 60.74	0	3657483..3659624	-	713	122879257	-	XOO3426	-	hypothetical protein
3061	 60.19	-1	3660457..3661182	-	241	58583050	-	XOO3427	-	AraC/XylS family transcriptional regulator
3062	 70.35	+1	3661314..3661775	-	153	58583051	-	XOO3428	-	hypothetical protein
3063	 60.92	0	3661825..3662085	-	86	58583052	-	XOO3429	-	IS1595 transposase
3064	 58.69	-1	3662116..3662328	-	70	58583053	-	XOO3430	-	IS1595 transposase
3065	 63.48	0	3662355..3663389	+	344	58583054	-	XOO3431	-	IS1478 transposase
3066	 62.99	0	3663409..3663816	+	135	58583055	-	XOO3432	-	IS1478 transposase
3067	 63.84	0	3663890..3666010	-	706	122879258	-	XOO3433	-	alanyl dipeptidyl peptidase
3068	 63.50	0	3666277..3667380	-	367	58583057	-	XOO3434	-	hypothetical protein
3069	 66.51	0	3668247..3670217	-	656	122879259	oliA	XOO3435	-	oligopeptide transporter
3070	 63.02	0	3670646..3672043	+	465	58583059	-	XOO3436	-	endoproteinase Arg-C
3071	 64.50	0	3672156..3673076	-	306	58583060	-	XOO3437	-	hypothetical protein
3072	 57.44	-1	3673077..3673271	-	64	58583061	-	XOO3438	-	prolyl oligopeptidase family protein
3073	 65.25	0	3673285..3676536	-	1083	58583062	dnaE2	XOO3439	-	DNA polymerase III alpha chain
3074	 68.78	+1	3676718..3678136	-	472	58583063	-	XOO3440	-	hypothetical protein
3075	 70.66	+1	3678146..3678796	-	216	58583064	-	XOO3441	-	hypothetical protein
3076	 66.50	0	3678798..3679403	-	201	58583065	lexA	XOO3442	-	LexA repressor
3077	 61.71	0	3679553..3679774	+	73	58583066	-	XOO3443	-	hypothetical protein
3078	 61.36	0	3679814..3680284	+	156	58583067	doc	XOO3444	-	death-on-curing protein
3079	 58.60	-1	3680685..3681056	+	123	58583068	-	XOO3445	-	putative transposase
3080	 58.91	-1	3681022..3681498	+	158	58583069	-	XOO3446	-	putative transposase
3081	 69.24	+1	3681955..3682575	-	206	58583070	-	XOO3447	-	hypothetical protein
3082	 64.31	0	3682575..3683594	-	339	58583071	-	XOO3448	-	hypothetical protein
3083	 64.54	0	3683542..3684198	+	218	58583072	uidR	XOO3449	-	uid family transcriptional regulator
3084	 61.54	0	3684259..3684492	-	77	121632113	-	YXOOp01	-	hypothetical protein
3085	 66.27	0	3685343..3686089	-	248	122879260	-	XOO3450	-	hypothetical protein
3086	 60.99	0	3687275..3688102	+	275	122879261	stkXac1	XOO3451	-	serine/threonine kinase
3087	 61.66	0	3688896..3691550	-	884	122879262	-	XOO3452	-	type I restriction-modification system endonuclease
3088	 53.45	-2	3693324..3693497	-	57	58583077	-	XOO3454	-	hypothetical protein
3089	 61.20	0	3695506..3697443	-	645	58583080	hsdM-1	XOO3457	-	type I restriction system adenine methylase
3090	 57.56	-1	3697338..3698402	-	354	58583081	-	XOO3458	-	hypothetical protein
3091	 57.61	-1	3698383..3698691	-	102	58583082	-	XOO3459	-	hypothetical protein
3092	 63.45	0	3698698..3699039	-	113	58583083	-	XOO3460	-	hypothetical protein
3093	 65.97	0	3699193..3702765	+	1190	58583084	hsdR	XOO3461	-	type I restriction enzyme EcoKI subunit R
3094	 60.96	0	3702677..3703903	+	408	58583085	-	XOO3462	-	abortive infection bacteriophage resistance protein
3095	 64.79	0	3703950..3705494	+	514	58583086	hsdM-2	XOO3463	-	type I restriction-modification system, M subunit
3096	 56.56	-2	3705472..3706866	+	464	58583087	-	XOO3464	-	Type I restriction enzyme StySPI specificity protein
3097	 65.05	0	3706900..3707208	-	102	58583088	-	XOO3465	-	hypothetical protein
3098	 66.29	0	3707215..3707478	-	87	121632114	-	YXOOp02	-	hypothetical protein
3099	 67.99	+1	3708207..3708962	+	251	58583089	-	XOO3466	-	hypothetical protein
3100	 53.96	-2	3709256..3710278	-	340	58583090	-	XOO3467	-	hypothetical protein
3101	 64.19	0	3710288..3713155	-	955	58583091	-	XOO3468	-	hypothetical protein
3102	 55.59	-2	3716033..3718045	-	670	58583095	-	XOO3472	-	hypothetical protein
3103	 65.87	0	3719245..3720123	-	292	121632115	-	XOO4882	-	hypothetical protein
3104	 73.26	+2	3720130..3721191	-	353	122879263	-	XOO3473	-	hypothetical protein
3105	 72.26	+2	3721305..3722894	-	529	58583097	-	XOO3474	-	hypothetical protein
3106	 66.38	0	3722987..3723340	-	117	121632116	-	YXOOp03	-	hypothetical protein
3107	 68.06	+1	3723371..3726100	-	909	58583098	clpB	XOO3475	-	ClpB
3108	 68.04	+1	3726186..3727277	-	363	58583099	-	XOO3476	-	hypothetical protein
3109	 65.96	0	3727241..3729076	-	611	58583100	-	XOO3477	-	hypothetical protein
3110	 62.17	0	3729079..3729567	-	162	58583101	-	XOO3478	-	hypothetical protein
3111	 59.44	-1	3729715..3730212	-	165	58583102	hcp	XOO3479	-	hypothetical protein
3112	 61.46	0	3730354..3731850	-	498	58583103	-	XOO3480	-	hypothetical protein
3113	 58.88	-1	3731854..3732354	-	166	58583104	-	XOO3481	-	hypothetical protein
3114	 67.48	+1	3732401..3733015	-	204	58583105	-	XOO3482	-	hypothetical protein
3115	 65.75	0	3733231..3733884	+	217	58583106	-	XOO3483	-	putative transmembrane protein
3116	 65.39	0	3734036..3735370	+	444	122879264	-	XOO3484	-	hypothetical protein
3117	 66.54	0	3735367..3736158	+	263	58583108	-	XOO3485	-	hypothetical protein
3118	 73.60	+2	3736169..3738706	+	845	58583109	-	XOO3486	-	hypothetical protein
3119	 58.07	-1	3738731..3741625	+	964	58583110	-	XOO3487	-	EF hand domain-containing protein
3120	 73.57	+2	3742460..3743893	+	477	58583111	-	XOO3488	-	hypothetical protein
3121	 51.29	-2	3743897..3746152	+	751	58583112	-	XOO3489	-	hypothetical protein
3122	 73.17	+2	3746714..3748975	+	753	58583113	-	XOO3490	-	hypothetical protein
3123	 63.56	0	3751166..3752389	+	407	58583114	-	XOO3491	-	ISxac1 transposase
3124	 60.93	0	3752416..3752955	+	179	58583115	-	XOO3492	-	hypothetical protein
3125	 61.90	0	3753076..3753369	+	97	121632117	-	XOO4885	-	hypothetical protein
3126	 66.95	0	3754099..3754446	+	115