IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2783	 58.91	-1	3335427..3335903	+	158	58582734	-	XOO3111	-	putative transposase
2784	 65.14	0	3336018..3338369	-	783	58582735	-	XOO3112	-	hypothetical protein
2785	 60.24	-1	3339105..3339524	-	139	58582737	btuB	XOO3114	-	TonB-dependent receptor
2786	 57.48	-1	3339567..3339947	-	126	58582738	btuB	XOO3115	-	TonB-dependent receptor
2787	 58.97	-1	3339986..3340492	-	168	58582739	btuB	XOO3116	-	TonB-dependent receptor
2788	 55.15	-2	3340547..3340711	+	54	58582740	tnpX1	XOO3117	-	IS1113 transposase
2789	 62.37	0	3340718..3341788	+	356	58582741	tnpX1	XOO3118	-	IS1113 transposase
2790	 65.11	0	3341798..3342886	-	362	58582742	btuB	XOO3119	-	TonB-dependent receptor
2791	 64.45	0	3343242..3345587	-	781	122879241	-	XOO3120	-	peptidase
2792	 65.27	0	3345909..3347624	-	571	58582744	xsa	XOO3121	-	xylosidase; arabinosidase
2793	 64.21	0	3347492..3351766	-	1424	58582745	-	XOO3122	-	hypothetical protein
2794	 61.30	0	3352095..3355040	-	981	58582746	btuB	XOO3123	-	TonB-dependent receptor
2795	 66.33	0	3355433..3357838	-	801	58582747	-	XOO3124	-	hypothetical protein
2796	 66.16	0	3358254..3359825	+	523	122879242	-	XOO3125	-	peptidase
2797	 60.96	0	3360032..3360364	-	110	58582749	-	XOO3126	-	hypothetical protein
2798	 66.50	0	3360673..3361263	-	196	58582750	-	XOO3127	-	hypothetical protein
2799	 70.00	+1	3361305..3361514	-	69	58582751	-	XOO3128	-	hypothetical protein
2800	 66.67	0	3361511..3361702	-	63	58582752	-	XOO3129	-	hypothetical protein
2801	 62.15	0	3361758..3362045	-	95	58582753	-	XOO3130	-	hypothetical protein
2802	 64.74	0	3362042..3364381	-	779	122879243	-	XOO3131	-	peptidase
2803	 63.20	0	3364371..3365957	-	528	58582755	yveA	XOO3132	-	amino acid permease
2804	 63.15	0	3366020..3367696	-	558	58582756	-	XOO3133	-	hypothetical protein
2805	 63.23	0	3367883..3369715	-	610	58582757	-	XOO3134	-	hypothetical protein
2806	 66.91	0	3369833..3371062	-	409	58582758	pepQ	XOO3135	-	proline dipeptidase
2807	 67.66	+1	3371029..3372645	-	538	122879244	-	XOO3136	-	ketoglutarate semialdehyde dehydrogenase
2808	 65.79	0	3372856..3373764	-	302	58582760	dapA	XOO3137	-	dihydrodipicolinate synthetase
2809	 69.21	+1	3373761..3375095	-	444	58582761	-	XOO3138	-	oxidoreductase
2810	 70.73	+1	3375067..3375312	-	81	58582762	soxA	XOO3139	-	sarcosine oxidase alpha subunit
2811	 70.70	+1	3375309..3376571	-	420	58582763	-	XOO3140	-	D-amino acid oxidase
2812	 65.98	0	3376571..3377596	-	341	58582764	-	XOO3141	-	hypothetical protein
2813	 61.87	0	3377655..3378383	+	242	58582765	-	XOO3142	-	transcriptional regulator
2814	 67.61	+1	3378399..3380204	+	601	58582766	ftsY	XOO3143	-	cell division protein
2815	 65.18	0	3380683..3381756	+	357	58582767	mutY	XOO3144	-	A/G-specific adenine glycosylase
2816	 62.00	0	3381759..3382058	+	99	58582768	-	XOO3145	-	hypothetical protein
2817	 60.53	0	3382758..3384044	-	428	58582770	fixL	XOO3147	-	sensor histidine kinase
2818	 62.69	0	3384922..3385701	+	259	58582771	-	XOO3148	-	IS1478 transposase
2819	 62.31	0	3385741..3386382	+	213	58582772	-	XOO3149	-	IS1478 transposase
2820	 63.66	0	3386372..3386836	+	154	58582773	-	XOO3150	-	hypothetical protein
2821	 69.84	+1	3386809..3386934	+	41	58582774	-	XOO3151	-	hypothetical protein
2822	 64.90	0	3386951..3387460	-	169	58582775	-	XOO3152	-	hypothetical protein
2823	 65.02	0	3387885..3388127	-	80	58582776	-	XOO3153	-	hypothetical protein
2824	 64.61	0	3389143..3390066	-	307	58582777	-	XOO3154	-	hypothetical protein
2825	 66.54	0	3390063..3390881	-	272	58582778	-	XOO3155	-	hypothetical protein
2826	 64.17	0	3390997..3391317	+	106	58582779	-	XOO3156	-	hypothetical protein
2827	 58.70	-1	3391824..3392300	-	158	58582780	-	XOO3157	-	putative transposase
2828	 58.33	-1	3392266..3392637	-	123	58582781	-	XOO3158	-	putative transposase
2829	 64.09	0	3392844..3393812	-	322	58582783	-	XOO3160	-	putative transposase
2830	 67.33	+1	3395240..3395842	+	200	58582784	blc	XOO3161	-	outer membrane lipoprotein Blc
2831	 67.34	+1	3398390..3398986	+	198	58582786	-	XOO3163	-	putative transposase
2832	 63.06	0	3398983..3399426	+	147	58582787	-	XOO3164	-	putative transposase
2833	 61.23	0	3399673..3400830	+	385	58582788	tISRso5	XOO3165	-	ISRSO5-transposase protein
2834	 65.14	0	3400948..3401928	-	326	58582789	gumN	XOO3166	-	GumN
2835	 65.80	0	3402038..3402499	-	153	58582790	-	XOO3167	-	hypothetical protein
2836	 63.65	0	3402534..3403328	-	264	58582791	gumM	XOO3168	-	GumM
2837	 56.48	-2	3403333..3404127	-	264	58582792	gumL	XOO3169	-	GumL
2838	 60.57	0	3404164..3405360	-	398	58582793	gumK	XOO3170	-	glucuronosyltransferase GumK
2839	 62.51	0	3405425..3406939	-	504	58582794	gumJ	XOO3171	-	GumJ
2840	 64.00	0	3406936..3407985	-	349	58582795	gumI	XOO3172	-	GumI
2841	 60.37	0	3407982..3409124	-	380	58582796	gumH	XOO3173	-	GumH
2842	 62.12	0	3409192..3410268	-	358	122879245	gumG	XOO3174	-	GumG
2843	 60.53	0	3410285..3411376	-	363	58582798	gumF	XOO3175	-	GumF
2844	 57.37	-1	3411373..3412674	-	433	58582799	gumE	XOO3176	-	GumE
2845	 60.82	0	3412757..3414277	-	506	58582800	gumD	XOO3177	-	GumD
2846	 57.96	-1	3414455..3415936	-	493	58582801	gumC	XOO3178	-	GumC
2847	 58.94	-1	3415876..3416574	-	232	58582802	gumB	XOO3179	-	GumB
2848	 61.62	0	3417183..3417539	-	118	58582803	-	XOO3180	-	hypothetical protein
2849	 57.67	-1	3417520..3417819	-	99	58582804	ihfA	XOO3181	-	integration host factor subunit alpha
2850	 66.12	0	3417841..3420219	-	792	58582805	pheT	XOO3182	-	phenylalanyl-tRNA synthetase subunit beta
2851	 63.86	0	3420328..3421323	-	331	58582806	pheS	XOO3183	-	phenylalanyl-tRNA synthetase subunit alpha
2852	 60.28	-1	3421578..3421937	-	119	58582807	rplT	XOO3184	-	50S ribosomal protein L20
2853	 61.62	0	3421948..3422145	-	65	58582808	rpmI	XOO3185	-	50S ribosomal protein L35
2854	 59.79	-1	3422394..3422873	-	159	58582809	infC	XOO3186	-	translation initiation factor IF-3
2855	 62.80	0	3422985..3425000	-	671	58582810	thrS	XOO3187	-	threonyl-tRNA synthetase
2856	 60.22	-1	3425306..3425398	+	30	58582811	-	XOO3188	-	maltose transport gene repressor
2857	 61.16	0	3425454..3426143	+	229	58582812	-	XOO3189	-	IS1404 transposase
2858	 61.57	0	3425692..3425907	+	71	58582813	-	XOO3190	-	IS1404 transposase
2859	 62.26	0	3426140..3426457	+	105	58582814	-	XOO3191	-	IS1389 transposase
2860	 57.66	-1	3426570..3426791	-	73	58582815	-	XOO3192	-	IS1478 transposase
2861	 60.24	-1	3427182..3429203	-	673	122879246	uvrB	XOO3193	-	excinuclease ABC subunit B
2862	 59.67	-1	3429342..3429884	+	180	58582817	fimT	XOO3194	-	fimbrial biogenesis protein
2863	 60.09	-1	3430063..3430518	-	151	58582818	pilE1	XOO3195	-	type IV pilin
2864	 55.09	-2	3430525..3434049	-	1174	58582819	pilY1	XOO3196	-	PilY1
2865	 61.62	0	3434053..3435141	-	362	58582820	-	XOO3197	-	putative transposase
2866	 61.40	0	3435144..3436112	+	322	58582821	-	XOO3198	-	putative transposase
2867	 57.84	-1	3436705..3437214	-	169