IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2654	 63.58	0	3163311..3163925	-	204	58582577	-	XOO2954	-	hypothetical protein
2655	 67.85	+1	3163944..3164621	-	225	58582578	pcm	XOO2955	-	L-isoaspartate protein carboxylmethyltransferase type II
2656	 66.17	0	3164618..3165421	-	267	58582579	surE	XOO2956	-	stationary phase survival protein SurE
2657	 66.83	0	3165431..3166036	+	201	58582580	-	XOO2957	-	hypothetical protein
2658	 66.13	0	3166451..3167560	-	369	161898977	truD	XOO2959	-	tRNA pseudouridine synthase D
2659	 65.24	0	3167681..3168172	-	163	58582583	ispF	XOO2960	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2660	 68.01	+1	3168328..3169146	-	272	58582584	ispD	XOO2961	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2661	 63.93	0	3169143..3169508	-	121	58582585	ftsB	XOO2962	-	cell division protein FtsB
2662	 64.12	0	3169512..3170885	-	457	58582586	eno	XOO2963	-	phosphopyruvate hydratase
2663	 64.29	0	3170929..3171180	-	83	58582587	-	XOO2964	-	hypothetical protein
2664	 63.06	0	3171287..3172117	-	276	122879232	kdsA	XOO2966	-	2-dehydro-3-deoxyphosphooctonate aldolase
2665	 63.60	0	3172321..3173985	-	554	161898976	pyrG	XOO2967	-	CTP synthetase
2666	 71.19	+2	3174160..3174402	-	80	58582591	-	XOO2968	-	hypothetical protein
2667	 63.06	0	3174435..3176456	+	673	58582592	parE	XOO2969	-	DNA topoisomerase IV subunit B
2668	 58.70	-1	3176475..3176951	-	158	58582593	-	XOO2970	-	putative transposase
2669	 58.55	-1	3176917..3177384	-	155	58582594	-	XOO2971	-	putative transposase
2670	 63.82	0	3177689..3179197	+	502	122879233	-	XOO2972	-	carboxypeptidase-related protein
2671	 62.72	0	3179255..3179887	-	210	58582596	-	XOO2973	-	hypothetical protein
2672	 64.89	0	3180093..3181220	-	375	58582597	pitA	XOO2974	-	transport protein
2673	 60.83	0	3181230..3181880	-	216	58582598	-	XOO2975	-	hypothetical protein
2674	 63.39	0	3182129..3183469	+	446	58582599	tlyC	XOO2976	-	hemolysin
2675	 63.53	0	3183453..3184121	+	222	58582600	exoD	XOO2977	-	ExoD protein
2676	 62.08	0	3184153..3184653	-	166	58582601	-	XOO2978	-	general stress protein
2677	 65.77	0	3184714..3185715	-	333	122879234	-	XOO2979	-	hypothetical protein
2678	 63.91	0	3186520..3187935	+	471	58582603	-	XOO2980	-	MFS transporter
2679	 65.10	0	3188243..3190027	-	594	58582604	-	XOO2981	-	ABC transporter ATP-binding protein
2680	 64.99	0	3190058..3191128	-	356	58582605	-	XOO2982	-	hypothetical protein
2681	 62.45	0	3191087..3192769	+	560	58582606	-	XOO2983	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase
2682	 64.61	0	3192859..3194073	+	404	58582607	-	XOO2984	-	hypothetical protein
2683	 65.14	0	3194177..3195289	-	370	58582608	-	XOO2985	-	hexosyltransferase
2684	 66.17	0	3195286..3196485	-	399	58582609	-	XOO2986	-	glycosyltransferase
2685	 67.83	+1	3196538..3197311	-	257	58582610	bioC	XOO2987	-	biotin synthesis protein
2686	 67.79	+1	3197233..3198480	-	415	58582611	-	XOO2988	-	hypothetical protein
2687	 66.19	0	3198481..3199323	-	280	58582612	-	XOO2989	-	methyltransferase
2688	 66.43	0	3199604..3200455	-	283	58582613	-	XOO2990	-	hypothetical protein
2689	 64.25	0	3201631..3202581	-	316	58582615	-	XOO2992	-	glycosyl transferase
2690	 63.40	0	3202578..3203831	-	417	58582616	-	XOO2993	-	lipopolysaccharide biosynthesis protein
2691	 63.11	0	3203828..3204952	-	374	58582617	-	XOO2994	-	aminotransferase
2692	 62.86	0	3204940..3205938	-	332	58582618	-	XOO2995	-	hypothetical protein
2693	 63.30	0	3205859..3206749	-	296	58582619	-	XOO2996	-	hypothetical protein
2694	 60.12	-1	3206816..3207502	-	228	58582620	-	XOO2997	-	hypothetical protein
2695	 61.57	0	3207484..3207915	-	143	58582621	-	XOO2998	-	hypothetical protein
2696	 68.63	+1	3208331..3208840	+	169	122879235	-	XOO2999	-	cytochrome like B561
2697	 64.22	0	3208837..3210264	+	475	58582623	-	XOO3000	-	cytochrome C
2698	 63.11	0	3210317..3210682	+	121	122879236	cycA	XOO3001	-	cytochrome C2
2699	 67.31	+1	3210834..3211913	+	359	58582625	-	XOO3002	-	hypothetical protein
2700	 64.81	0	3211965..3212558	+	197	58582626	rpoE	XOO3003	-	RNA polymerase sigma-E factor
2701	 68.04	+1	3212555..3213211	+	218	58582628	-	XOO3005	-	hypothetical protein
2702	 66.89	0	3213208..3214533	+	441	122879237	-	XOO3004	-	serine protease
2703	 63.90	0	3214544..3215302	+	252	58582629	ccmC	XOO3006	-	heme exporter protein C; cytochrome C-type biogenesis protein
2704	 68.12	+1	3215299..3215505	+	68	58582631	-	XOO3008	-	hypothetical protein
2705	 64.33	0	3215502..3215972	+	156	161898975	cycJ	XOO3007	-	cytochrome c-type biogenesis protein CcmE
2706	 64.91	0	3216036..3218024	+	662	58582632	cycK	XOO3009	-	C-type cytochrome biogenesis membrane protein
2707	 64.83	0	3218021..3218563	+	180	58582633	dsbE	XOO3010	-	C-type cytochrome biogenesis protein/thioredoxin
2708	 64.63	0	3218563..3219054	+	163	58582634	cycL	XOO3011	-	C-type cytochrome biogenesis protein
2709	 65.96	0	3219048..3219758	+	236	58582635	-	XOO3012	-	hypothetical protein
2710	 65.83	0	3219883..3223686	+	1267	58582636	pthA2	XOO3013	-	avirulence protein
2711	 66.82	0	3224466..3229838	+	1790	58582637	-	XOO3014	-	avirulence protein
2712	 65.83	0	3230618..3234457	+	1279	58582638	pthA3	XOO3015	-	avirulence protein
2713	 62.63	0	3234937..3235530	-	197	58582639	-	XOO3016	-	cation/multidrug efflux pump
2714	 65.06	0	3235520..3237010	-	496	58582640	-	XOO3017	-	IS1478 transposase
2715	 62.88	0	3237093..3239681	-	862	58582641	mexB	XOO3018	-	multidrug efflux transporter
2716	 67.30	0	3239738..3240850	-	370	58582642	-	XOO3019	-	hypothetical protein
2717	 67.36	+1	3240975..3241553	+	192	58582643	-	XOO3020	-	hypothetical protein
2718	 66.04	0	3243039..3245126	+	695	58582645	-	XOO3022	-	putative type III effector HolPsyAE
2719	 59.65	-1	3250458..3250799	+	113	58582649	-	XOO3026	-	IS1404 transposase
2720	 61.93	0	3250793..3251320	+	175	58582650	-	XOO3027	-	IS1404 transposase
2721	 64.63	0	3251283..3252068	-	261	58582651	-	XOO3028	-	putative transposase
2722	 56.49	-2	3252116..3252754	+	212	58582652	-	XOO3029	-	Tn5044 transposase
2723	 65.26	0	3253076..3253855	+	259	58582653	-	XOO3030	-	VirG-like two component response regulator
2724	 64.85	0	3253852..3254844	+	330	58582654	-	XOO3031	-	cytochrome C peroxidase
2725	 65.89	0	3254841..3257300	+	819	58582655	virA	XOO3032	-	VirA-like protein
2726	 66.16	0	3257414..3258394	+	326	58582656	-	XOO3033	-	hypothetical protein
2727	 66.47	0	3258391..3259431	+	346	58582657	-	XOO3034	-	hypothetical protein
2728	 69.83	+1	3259927..3262830	-	967	58582658	-	XOO3035	-	serine/threonine kinase
2729	 69.29	+1	3262827..3263549	-	240	58582659	ptc1	XOO3036	-	phosphoprotein phosphatase
2730	 68.35	+1	3263546..3264199	-	217	58582660	-	XOO3037	-	hypothetical protein
2731	 68.37	+1	3264190..3267648	-	1152	58582661	-	XOO3038	-	hypothetical protein
2732	 70.24	+1	3267652..3268968	-	438	58582662	-	XOO3039	-	hypothetical protein
2733	 70.29	+1	3271738..3272289	-	183	58582665	-	XOO3042	-	hypothetical protein
2734	 65.10	0	3272286..3274334	-	682	58582666	-	XOO3043	-	hypothetical protein
2735	 59.92	-1	3275021..3275272	-	83	58582667	-	XOO3044	-	IS1479 transposase
2736	 63.99	0	3276579..3279377	-	932	58582668	clpB	XOO3045	-	ClpB
2737	 67.63	+1	32793