IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1590	 65.31	0	1840788..1841891	-	367	58581386	-	XOO1763	-	hypothetical protein
1591	 61.24	0	1842394..1842780	-	128	58581387	-	XOO1764	-	transposase
1592	 65.77	0	1843972..1844082	-	36	58581390	-	XOO1767	-	hypothetical protein
1593	 66.25	0	1844913..1847321	+	802	122879133	-	XOO1768	-	hypothetical protein
1594	 64.93	0	1847371..1849326	-	651	58581392	bga	XOO1769	-	beta-galactosidase
1595	 65.33	0	1849492..1851894	-	800	58581393	-	XOO1770	-	hypothetical protein
1596	 66.73	0	1851970..1853433	-	487	58581394	-	XOO1771	-	hypothetical protein
1597	 64.19	0	1854236..1855651	+	471	58581395	-	XOO1772	-	membrane-fusion protein
1598	 61.20	0	1856295..1857263	-	322	58581396	-	XOO1773	-	putative transposase
1599	 52.01	-2	1857506..1858624	+	372	58581397	-	XOO1774	-	hypothetical protein
1600	 62.38	0	1860063..1861322	-	419	58581400	-	XOO1777	-	transposase
1601	 60.57	0	1861431..1863545	+	704	58581401	-	XOO1778	-	colicin V secretion ABC transporter ATP-binding protein
1602	 66.22	0	1863690..1866359	-	889	58581402	-	XOO1779	-	glucan 1,4-beta-glucosidase
1603	 64.95	0	1866566..1869247	-	893	58581403	-	XOO1780	-	beta-mannosidase
1604	 65.52	0	1869269..1871803	-	844	58581404	nahA	XOO1781	-	beta-hexosaminidase
1605	 59.55	-1	1872117..1873184	-	355	58581405	-	XOO1782	-	hypothetical protein
1606	 64.28	0	1873188..1874903	-	571	58581406	fucA1	XOO1783	-	alpha-L-fucosidase
1607	 61.17	0	1875083..1877794	-	903	58581407	iroN	XOO1784	-	TonB-dependent receptor
1608	 66.58	0	1878412..1879512	+	366	58581408	glk	XOO1785	-	glucokinase
1609	 68.91	+1	1879814..1880617	-	267	58581409	-	XOO1786	-	hypothetical protein
1610	 65.89	0	1880539..1881957	-	472	58581410	bioA	XOO1787	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1611	 64.80	0	1881906..1882547	+	213	58581412	nudE	XOO1789	-	ADP-ribose diphosphatase NudE
1612	 66.04	0	1882544..1883344	+	266	122879134	cysQ	XOO1788	-	sulfite synthesis pathway protein
1613	 64.61	0	1883587..1884606	+	339	58581413	mazG	XOO1790	-	nucleoside triphosphate pyrophosphohydrolase
1614	 64.71	0	1884603..1884857	+	84	58581414	-	XOO1791	-	hypothetical protein
1615	 66.67	0	1884845..1884940	+	31	121632085	-	XOO4784	-	hypothetical protein
1616	 62.94	0	1885238..1886203	+	321	58581415	-	XOO1792	-	hypothetical protein
1617	 66.32	0	1886207..1886785	+	192	58581416	-	XOO1793	-	hypothetical protein
1618	 63.96	0	1886813..1887922	+	369	58581417	gcvT	XOO1794	-	glycine cleavage system aminomethyltransferase T
1619	 63.38	0	1888059..1888454	+	131	58581418	gcvH	XOO1795	-	glycine cleavage system protein H
1620	 57.34	-1	1889147..1890229	+	360	58581419	-	XOO1796	-	hypothetical protein
1621	 65.99	0	1890823..1892289	-	488	58581420	bla	XOO1797	-	beta-lactamase
1622	 62.52	0	1892649..1893806	+	385	58581421	-	XOO1798	-	hypothetical protein
1623	 65.33	0	1894081..1894530	+	149	58581423	-	XOO1800	-	hypothetical protein
1624	 63.65	0	1897395..1898288	-	297	58581426	-	XOO1803	-	hypothetical protein
1625	 65.14	0	1898380..1899033	+	217	58581427	-	XOO1804	-	transcriptional regulator
1626	 58.49	-1	1899143..1902052	-	969	58581428	-	XOO1805	-	hypothetical protein
1627	 65.63	0	1902300..1903169	-	289	58581429	-	XOO1806	-	hypothetical protein
1628	 65.71	0	1903290..1904333	-	347	58581430	-	XOO1807	-	heat shock protein
1629	 64.23	0	1904255..1904992	+	245	121632086	mtgA	XOO4787	-	monofunctional biosynthetic peptidoglycan transglycosylase
1630	 63.41	0	1904935..1906041	+	368	58581432	gtrB	XOO1809	-	glucosyl transferase
1631	 58.59	-1	1906001..1906099	+	32	121632087	-	XOO4788	-	hypothetical protein
1632	 62.22	0	1906115..1906429	+	104	58581433	-	XOO1810	-	hypothetical protein
1633	 66.01	0	1907732..1907884	-	50	58581436	-	XOO1813	-	hypothetical protein
1634	 60.62	0	1907913..1908557	-	214	58581437	hly3	XOO1814	-	hemolysin III
1635	 63.93	0	1908633..1910237	-	534	58581438	prfC	XOO1815	-	peptide chain release factor 3
1636	 69.82	+1	1910370..1911257	-	295	122879135	-	XOO1816	-	hypothetical protein
1637	 65.88	0	1911471..1912619	+	382	58581440	metA	XOO1817	-	homoserine O-acetyltransferase
1638	 64.20	0	1912616..1913833	+	405	58581441	metB	XOO1818	-	cystathionine gamma-synthase
1639	 65.48	0	1914251..1914925	+	224	122879136	-	XOO1820	-	homoserine dehydrogenase
1640	 64.06	0	1915599..1916981	-	460	122879137	sdaA	XOO1821	-	L-serine dehydratase
1641	 67.47	+1	1917054..1917302	+	82	58581445	-	XOO1822	-	hypothetical protein
1642	 65.64	0	1917388..1917777	-	129	58581446	-	XOO1823	-	cold shock domain-containing protein
1643	 64.39	0	1918102..1918671	-	189	58581447	-	XOO1824	-	hypothetical protein
1644	 64.01	0	1918681..1919244	-	187	58581448	yodB	XOO1825	-	cytochrome B561
1645	 68.17	+1	1919241..1919903	-	220	58581449	-	XOO1826	-	hypothetical protein
1646	 64.02	0	1919943..1923575	+	1210	58581450	-	XOO1827	-	histidine kinase-response regulator hybrid protein
1647	 64.20	0	1923865..1927428	+	1187	122879138	-	XOO1828	-	histidine kinase/response regulator hybrid protein
1648	 57.96	-1	1927425..1930031	+	868	58581452	-	XOO1829	-	histidine kinase-response regulator hybrid protein
1649	 61.20	0	1930083..1931051	+	322	58581453	-	XOO1830	-	putative transposase
1650	 62.57	0	1931162..1932235	+	357	58581454	-	XOO1831	-	histidine kinase-response regulator hybrid protein
1651	 62.07	0	1932260..1932433	-	57	121632088	emrA	XOO4789	-	MFS transporter
1652	 55.24	-2	1932551..1932655	+	34	58581455	tnp	XOO1832	-	transposase
1653	 61.33	0	1932855..1933154	+	99	58581456	-	XOO1833	-	hypothetical protein
1654	 68.92	+1	1933339..1933560	-	73	58581457	-	XOO1834	-	ISxac3 transposase
1655	 66.56	0	1933766..1935697	+	643	58581458	-	XOO1835	-	hypothetical protein
1656	 63.66	0	1935819..1936217	+	132	58581459	-	XOO1836	-	hypothetical protein
1657	 64.05	0	1937238..1938230	-	330	58581461	bga	XOO1838	-	beta-galactosidase
1658	 67.03	0	1940077..1941462	-	461	122879139	-	XOO1841	-	transcriptional regulator
1659	 65.21	0	1941601..1943106	+	501	58581465	mmsA	XOO1842	-	methylmalonate-semialdehyde dehydrogenase
1660	 64.30	0	1943075..1944298	+	407	58581466	fadE9	XOO1843	-	acyl-CoA dehydrogenase
1661	 63.91	0	1944295..1945092	+	265	58581467	paaF	XOO1844	-	enoyl-CoA hydratase
1662	 65.56	0	1945092..1946264	+	390	58581468	-	XOO1845	-	enoyl-CoA hydratase
1663	 65.81	0	1946388..1947326	+	312	58581469	mmsB	XOO1846	-	3-hydroxyisobutirate dehydrogenase
1664	 65.56	0	1947535..1948530	+	331	58581470	czcD	XOO1847	-	cobalt-zinc-cadmium resistance protein
1665	 66.91	0	1948747..1950828	-	693	58581471	fadB	XOO1848	-	3-hydroxyacyl-CoA dehydrogenase
1666	 62.15	0	1950933..1951685	+	250	58581472	algU	XOO1849	-	RNA polymerase sigma factor RpoE
1667	 70.78	+1	1951682..1952581	+	299	58581473	-	XOO1850	-	regulatory protein
1668	 67.34	+1	1952508..1954277	+	589	58581474	mucD	XOO1851	-	periplasmic protease
1669	 62.24	0	1954443..1956248	+	601	58581475	lepA	XOO1852	-	GTP-binding protein LepA
1670	 58.80	-1	1956355..1957155	+	266	58581476	lepB	XOO1853	-	signal peptidase I
1671	 54.23	-2	1957186..1957563	+	125	58581477	-	XOO1854	-	hypothetical protein
1672	 63.58	0	1957553..1958233	+	226	58581478	rnc	XOO1855	-	ribonuclease III
1673	 65.56	0	1958230..1959129	+	299	58581479	era	XOO1856	-	GTP-binding protein Era
1674	 64.87	0	1959353..1960075	+	240	58581480	recO	XOO1857	-	DNA repair protein RecO
1675	 65.42	0	1960224..1960946	-	240	58581481	-	XOO1858	-	hypothetical protein
1676	 64.72	0	1961000..1962439	+	479	58581482	rumA	XOO1859	-	23S rRNA 5-methyluridine methyltransferase
1677	 60.04	-1	1962614..1963111	+	165	58581483	-	XOO1860	-	hypothetical protein
1678	 63.35	0	1963207..1964442	-	411	58581484	-	XOO1861	-	transposase
1679	 62.89	0	1964671..1966047	+	458	122879140	-	XOO1863	-	IS1478 transposase
1680	 65.88	0	1966092..1966850	+	252	58581487	frnE	XOO1864	-	polyketide synthase
1681	 65.20	0	1966810..1967901	+	363	58581488	-	XOO1865	-	hypothetical protein
1682	 64.83	0	1968082..1969659	+	525	58581489	-	XOO1866	-	hypothetical protein
1683	 67.86	+1	1969695..1970780	+	361	58581490	nagZ	XOO1867	-	beta-hexosaminidase
1684	 66.31	0	1970780..1971334	+	184	58581491	hpt	XOO1868	-	hypoxanthine-guanine phosphoribosyltransferase
1685	 63.55	0	1971402..1972172	+	256	58581492	deoD	XOO1869	-	5'-methylthioadenosine phosphorylase
1686	 59.65	-1	1972238..1972465	+	75	58581493	scoF	XOO1870	-	cold shock protein
1687	 67.60	+1	1974000..1974644	-	214	58581496	-	XOO1873	-	hypothetical protein
1688	 66.79	0	1974634..1977135	-	833	58581497	lhr2	XOO1874	-	helicase-related protein
1689	 66.67	0	1977132..1978736	-	534	161899000	lig2	XOO1875	-	ATP-dependent DNA ligase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.