IslandPathversion 1.0

IslandPath Analysis: Wolbachia endosymbiont strain TRS of Brugia malayi



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.55 STD DEV: 2.88
Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome - 1..1080084
805 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
237	 33.60	0	309894..310262	+	122	58584498	-	Wbm0240	-	HIT family hydrolase
238	 29.94	-1	310288..310641	+	117	58584499	-	Wbm0241	-	NADH:ubiquinone oxidoreductase chain A
239	 39.84	+1	310646..311152	+	168	58584500	-	Wbm0242	-	NADH dehydrogenase subunit B
240	 33.86	0	311154..311726	+	190	58584501	-	Wbm0243	-	NADH:ubiquinone oxidoreductase chain C
241	 37.75	+1	311729..312679	+	316	58584502	-	Wbm0244	-	malate dehydrogenase
242	 35.49	0	312694..313482	-	262	58584503	-	Wbm0245	-	Mg-dependent Dnase, TadD
243	 36.63	0	313499..313984	-	161	58584504	-	Wbm0246	-	dinucleoside polyphosphate hydrolase
244	 32.42	0	314730..315056	+	108	58584505	-	Wbm0247	-	hypothetical protein
245	 35.49	0	315115..316365	+	416	58584506	-	Wbm0248	-	tyrosyl-tRNA synthetase
246	 32.13	0	316706..316954	+	82	58584507	-	Wbm0249	-	hypothetical protein
247	 35.98	0	318040..318228	+	62	58584508	-	Wbm0250	-	hypothetical protein
248	 34.86	0	318469..319059	+	196	58584509	-	Wbm0251	-	Holliday junction resolvasome, DNA-binding subunit, RuvA
249	 37.61	+1	319037..320017	+	326	58584510	ruvB	Wbm0252	-	Holliday junction DNA helicase B
250	 33.99	0	320092..321000	+	302	58584511	-	Wbm0253	-	hypothetical protein
251	 37.08	0	321033..321566	+	177	58584512	-	Wbm0254	-	3-methyladenine DNA glycosylase
252	 36.58	0	321593..322978	-	461	58584513	-	Wbm0255	-	amidophosphoribosyltransferase
253	 32.78	0	323733..324275	+	180	58584514	-	Wbm0256	-	5-formyltetrahydrofolate cyclo-ligase
254	 36.54	0	325884..328343	+	819	58584515	-	Wbm0257	-	DNA mismatch repair protein
255	 32.58	0	328410..329609	+	399	58584516	-	Wbm0258	-	ribonuclease D
256	 35.54	0	329592..330179	-	195	58584517	-	Wbm0259	-	dephospho-CoA kinase
257	 40.13	+1	330367..331749	+	460	58584518	-	Wbm0260	-	2-nitropropane dioxygenase-like protein
258	 35.16	0	332005..332277	+	90	58584519	-	Wbm0261	-	hypothetical protein
259	 33.86	0	332279..332656	+	125	58584520	-	Wbm0262	-	hypothetical protein
260	 37.59	+1	333919..336735	+	938	58584521	-	Wbm0263	-	excinuclease ATPase subunit, UvrA
261	 38.97	+1	337109..337303	+	64	58584522	-	Wbm0264	-	hypothetical protein
262	 29.72	-1	337613..337999	+	128	58584523	-	Wbm0265	-	hypothetical protein
263	 37.17	0	343063..345720	+	885	58584524	secA	Wbm0266	-	preprotein translocase subunit SecA
264	 36.24	0	346460..347455	-	331	58584525	nrdF	Wbm0267	-	ribonucleotide-diphosphate reductase subunit beta
265	 31.85	0	347588..347923	+	111	58584526	-	Wbm0268	-	small protein A, tmRNA-binding
266	 33.73	0	348899..349147	-	82	58584527	-	Wbm0269	-	hypothetical protein
267	 30.43	-1	349144..349350	-	68	58584528	-	Wbm0270	-	hypothetical protein
268	 38.34	+1	350302..353439	-	1045	58584529	-	Wbm0271	-	phosphoribosylformylglycinamidine synthase domain-containing protein
269	 33.63	0	353537..356203	+	888	58584530	-	Wbm0272	-	RecB exonuclease
270	 36.09	0	357011..358318	+	435	58584531	-	Wbm0273	-	adenylosuccinate synthetase
271	 35.38	0	359503..359697	+	64	58584532	-	Wbm0274	-	hypothetical protein
272	 33.33	0	360122..360850	-	242	58584533	-	Wbm0275	-	glutamine synthetase
273	 33.77	0	361157..362539	+	460	58584534	dnaA	Wbm0276	-	chromosomal replication initiation protein
274	 33.97	0	362563..363813	-	416	58584535	-	Wbm0277	-	calcineurin-like phosphoesterase
275	 33.80	0	364122..365204	+	360	58584536	-	Wbm0278	-	GTP cyclohydrolase II
276	 29.82	-1	365277..365960	+	227	58584537	-	Wbm0279	-	Type IV secretory pathway, component VirB8
277	 31.97	0	365947..366753	+	268	58584538	-	Wbm0280	-	Type IV secretory pathway, component VirB9
278	 37.54	+1	366770..368266	+	498	58584539	-	Wbm0281	-	Type IV secretory pathway, VirB10 component
279	 37.80	+1	368268..369275	+	335	58584540	-	Wbm0282	-	Type IV secretory pathway, VirB11 component
280	 36.58	0	369289..371319	+	676	58584541	-	Wbm0283	-	Type IV secretory pathway, VirD4 component
281	 35.34	0	371438..372283	+	281	58584542	-	Wbm0284	-	Outer surface protein Wsp
282	 35.58	0	372470..373405	-	311	58584543	-	Wbm0285	-	methylase of polypeptide chain release factor
283	 36.90	0	374614..376602	+	662	58584544	-	Wbm0286	-	cytochrome c biogenesis factor
284	 38.62	+1	376943..377188	+	81	58584545	-	Wbm0287	-	ankyrin repeat-containing protein
285	 34.30	0	377751..378473	-	240	161899045	recO	Wbm0288	-	DNA repair protein RecO
286	 35.78	0	378502..379032	-	176	58584547	-	Wbm0289	-	carbonic anhydrase
287	 33.96	0	379152..380264	+	370	58584548	-	Wbm0290	-	D-alanyl-D-alanine carboxypeptidase
288	 33.53	0	380929..381957	+	342	58584549	-	Wbm0291	-	membrane protein WF-2
289	 37.10	0	381964..382521	-	185	58584550	dcd	Wbm0292	-	deoxycytidine triphosphate deaminase
290	 32.84	0	384143..385159	-	338	58584551	-	Wbm0293	-	ABC-type phosphate transport system, periplasmic component
291	 32.31	0	385334..386704	-	456	58584552	-	Wbm0294	-	Mg/Co/Ni transporter MgtE
292	 37.69	+1	386953..387963	+	336	58584553	-	Wbm0295	-	protein chain release factor B
293	 35.83	0	388487..389809	+	440	58584554	-	Wbm0296	-	ankyrin repeat-containing protein
294	 35.42	0	391599..392366	-	255	58584555	-	Wbm0297	-	Sec-independent protein secretion pathway component, TatC
295	 38.10	+1	392363..393349	-	328	58584556	-	Wbm0298	-	glyceraldehyde-3-phosphate dehydrogenase, GapA
296	 37.19	0	394471..395922	-	483	58584557	-	Wbm0299	-	replicative DNA helicase
297	 34.46	0	396139..396762	+	207	58584558	-	Wbm0300	-	hypothetical protein
298	 30.70	-1	397793..398134	+	113	58584559	-	Wbm0301	-	hypothetical protein
299	 27.94	-2	398172..398486	+	104	58584560	rpmB	Wbm0302	-	50S ribosomal protein L28
300	 37.62	+1	398479..399342	+	287	58584561	-	Wbm0303	-	lipoyl synthase
301	 31.40	-1	401150..404101	-	983	58584562	-	Wbm0304	-	outer membrane protein
302	 33.82	0	404094..404504	-	136	58584563	-	Wbm0305	-	ribonuclease HI
303	 38.06	+1	404725..405612	-	295	58584564	-	Wbm0306	-	protoheme IX farnesyltransferase
304	 37.59	+1	405614..407164	-	516	58584565	-	Wbm0307	-	cytochrome c oxidase, subunit 1
305	 35.03	0	407181..407945	-	254	58584566	-	Wbm0308	-	cytochrome c oxidase, subunit 2
306	 35.34	0	409599..411044	-	481	58584567	-	Wbm0309	-	membrane-fusion protein
307	 34.42	0	411347..412081	+	244	58584568	-	Wbm0310	-	Short-chain alcohol dehydrogenase family enzyme
308	 34.17	0	412551..413741	-	396	58584569	-	Wbm0311	-	TPR repeat-containing Zn-dependent protease
309	 37.77	+1	413903..414556	-	217	58584570	-	Wbm0312	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
310	 34.55	0	414560..415054	-	164	58584571	-	Wbm0313	-	transcription elongation factor, GreA
311	 36.32	0	415063..416604	-	513	58584572	-	Wbm0314	-	F0F1 ATP synthase subunit alpha
312	 29.59	-1	416601..417161	-	186	58584573	-	Wbm0315	-	F0F1-type ATP synthase, delta subunit
313	 27.54	-2	417191..417535	-	114	58584574	-	Wbm0316	-	endonuclease
314	 31.93	0	417554..417982	-	142	58584575	rplQ	Wbm0317	-	50S ribosomal protein L17
315	 34.64	0	417990..419057	-	355	58584576	-	Wbm0318	-	DNA-directed RNA polymerase subunit alpha
316	 40.57	+2	419079..419465	-	128	58584577	-	Wbm0319	-	30S ribosomal protein S11
317	 36.86	0	419487..419855	-	122	58584578	rpsM	Wbm0320	-	30S ribosomal protein S13
318	 31.95	0	419914..420564	-	216	58584579	-	Wbm0321	-	adenylate kinase
319	 31.30	-1	420561..421889	-	442	58584580	secY	Wbm0322	-	preprotein translocase subunit SecY
320	 31.85	0	421893..422363	-	156	58584581	rplO	Wbm0323	-	50S ribosomal protein L15
321	 38.79	+1	422367..422879	-	170	58584582	rpsE	Wbm0324	-	30S ribosomal protein S5
322	 31.99	0	422892..423263	-	123	58584583	rplR	Wbm0325	-	50S ribosomal protein L18
323	 33.33	0	423269..423814	-	181	58584584	rplF	Wbm0326	-	50S ribosomal protein L6
324	 33.08	0	423831..424226	-	131	58584585	rpsH	Wbm0327	-	30S ribosomal protein S8
325	 30.74	-1	424248..424556	-	102	58584586	rpsN	Wbm0328	-	30S ribosomal protein S14
326	 31.27	-1	424573..425106	-	177	58584587	rplE	Wbm0329	-	50S ribosomal protein L5
327	 32.39	0	425113..425430	-	105	58584588	rplX	Wbm0330	-	50S ribosomal protein L24
328	 37.50	+1	425430..425789	-	119	58584589	rplN	Wbm0331	-	50S ribosomal protein L14
329	 32.91	0	425799..426032	-	77	58584590	rpsQ	Wbm0332	-	30S ribosomal protein S17
330	 30.92	-1	426025..426231	-	68	58584591	-	Wbm0333	-	50S ribosomal protein L29
331	 35.75	0	426240..426653	-	137	58584592	rplP	Wbm0334	-	50S ribosomal protein L16
332	 35.10	0	426665..427285	-	206	58584593	rpsC	Wbm0335	-	30S ribosomal protein S3
333	 31.62	-1	427324..427674	-	116	58584594	rplV	Wbm0336	-	50S ribosomal protein L22
334	 37.54	+1	427680..427964	-	94	58584595	rpsS	Wbm0337	-	30S ribosomal protein S19
335	 38.79	+1	427968..428792	-	274	58584596	rplB	Wbm0338	-	50S ribosomal protein L2
336	 26.04	-2	428794..429081	-	95	58584597	rplW	Wbm0339	-	50S ribosomal protein L23
34.55	MEAN

2.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.