IslandPathversion 1.0

IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.71 STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
504	 49.17	0	587332..588240	-	302	27366967	-	VV2_0534	-	oxidoreductase
505	 46.96	0	588334..588744	+	136	27366968	-	VV2_0535	-	transcriptional regulator
506	 41.72	-1	588707..589207	-	166	27366969	-	VV2_0536	-	hypothetical protein
507	 38.89	-2	589421..589654	-	77	27366970	-	VV2_0537	-	hypothetical protein
508	 40.57	-2	589761..591668	+	635	27366971	-	VV2_0538	-	hypothetical protein
509	 50.93	0	592035..593438	+	467	27366972	-	VV2_0540	-	chloride channel protein
510	 46.98	0	593793..594686	+	297	27366973	-	VV2_0541	-	tellurite resistance protein
511	 48.75	0	594730..595968	-	412	27366974	-	VV2_0542	-	manganese transporter NRAMP
512	 48.47	0	596234..596887	-	217	27366975	folE	VV2_0543	-	GTP cyclohydrolase I
513	 49.03	0	597063..598298	+	411	27366976	-	VV2_0544	-	molybdopterin biosynthesis protein
514	 49.54	0	598332..599084	+	250	27366977	-	VV2_0545	-	molybdopterin biosynthesis protein MoeB
515	 45.83	0	599231..599542	+	103	27366978	-	VV2_0546	-	hypothetical protein
516	 45.61	0	599555..600385	+	276	27366979	-	VV2_0547	-	rhodanese-related sulfurtransferase
517	 45.41	0	600415..602691	+	758	27366980	-	VV2_0548	-	signal transduction protein
518	 48.65	0	602769..604067	-	432	27366981	-	VV2_0549	-	chitinase
519	 50.15	0	604209..605201	-	330	27366982	-	VV2_0550	-	transcriptional regulator
520	 47.53	0	605665..606615	+	316	27366983	-	VV2_0552	-	transaldolase B
521	 51.31	+1	606697..608688	+	663	27366984	-	VV2_0553	-	transketolase
522	 49.29	0	609000..609563	+	187	27366985	-	VV2_0555	-	hypothetical protein
523	 48.12	0	609560..611953	+	797	27366986	-	VV2_0556	-	signal transduction protein
524	 47.34	0	612003..613565	-	520	27366987	-	VV2_0557	-	methyl-accepting chemotaxis protein
525	 47.86	0	613876..614928	-	350	27366988	-	VV2_0558	-	phospho-2-dehydro-3-deoxyheptonate aldolase
526	 47.49	0	615351..616424	+	357	27366989	-	VV2_0559	-	Outer membrane protein
527	 47.67	0	616540..617439	-	299	27366990	-	VV2_0560	-	protoheme IX farnesyltransferase
528	 49.11	0	617432..618439	-	335	27366991	-	VV2_0561	-	hypothetical protein
529	 45.13	0	618471..619004	-	177	27366992	-	VV2_0562	-	hypothetical protein
530	 50.06	0	618985..619761	-	258	27366993	-	VV2_0563	-	hypothetical protein
531	 46.78	0	619998..620882	-	294	27366994	-	VV2_0565	-	Heme/copper-type cytochrome/quinol oxidase, subunit 3
532	 50.89	0	620879..621442	-	187	27366995	-	VV2_0566	-	cytochrome C oxidase assembly protein
533	 49.69	0	621497..623128	-	543	27366996	-	VV2_0567	-	Heme/copper-type cytochrome/quinol oxidase, subunit 1
534	 49.96	0	623125..624261	-	378	27366997	-	VV2_0568	-	cytochrome c, mono- and diheme variants
535	 51.44	+1	624615..626321	+	568	27366998	-	VV2_0569	-	phosphomannomutase
536	 41.84	-1	626381..626803	-	140	27366999	-	VV2_0570	-	histone acetyltransferase HPA2
537	 45.50	0	626971..627603	-	210	27367000	-	VV2_0571	-	putative threonine efflux protein
538	 48.74	0	627834..628664	+	276	27367001	-	VV2_0572	-	AraC-type DNA-binding domain-containing protein
539	 52.38	+1	628734..629447	+	237	27367002	-	VV2_0573	-	branched-chain amino acid permease
540	 48.25	0	629444..629758	+	104	27367003	-	VV2_0574	-	hypothetical protein
541	 48.94	0	629780..630394	-	204	27367004	-	VV2_0575	-	2-keto-4-pentenoate hydratase
542	 46.41	0	630497..630955	-	152	27367005	-	VV2_0576	-	transcriptional regulator
543	 51.54	+1	631070..631492	+	140	27367006	-	VV2_0577	-	redox protein, regulator of disulfide bond formation
544	 48.52	0	631599..632645	-	348	27367007	-	VV2_0578	-	Outer membrane protein
545	 48.17	0	633112..633603	+	163	27367008	-	VV2_0579	-	Thiol-disulfide isomerase
546	 47.44	0	633756..634733	+	325	27367009	-	VV2_0580	-	Outer membrane protein
547	 46.51	0	635143..636918	+	591	27367010	-	VV2_0581	-	EAL domain-containing protein
548	 50.40	0	637256..638134	+	292	27367011	-	VV2_0582	-	DMT family permease
549	 47.03	0	638199..638804	+	201	27367012	-	VV2_0583	-	glutaredoxin
550	 41.48	-1	638898..639032	-	44	27367013	-	VV2_0584	-	hypothetical protein
551	 45.30	0	639226..639576	-	116	27367014	-	VV2_0585	-	hypothetical protein
552	 47.65	0	639635..640828	-	397	27367015	-	VV2_0586	-	major facilitator superfamily permease
553	 47.41	0	640932..641819	+	295	27367016	-	VV2_0587	-	transcriptional regulator
554	 46.20	0	642011..643852	+	613	27367017	-	VV2_0588	-	signal transduction protein
555	 47.66	0	643987..644349	-	120	27367018	-	VV2_0589	-	YjgF family translation initiation inhibitor
556	 49.18	0	644376..645416	-	346	27367019	-	VV2_0590	-	3-carboxymuconate cyclase
557	 50.24	0	645495..647966	-	823	27367020	-	VV2_0591	-	translation initiation factor 2
558	 52.13	+1	648046..649524	-	492	27367021	-	VV2_0592	-	Na+/proline symporter
559	 49.36	0	649753..650145	-	130	27367022	-	VV2_0593	-	YjgF family translation initiation inhibitor
560	 48.58	0	650221..651630	-	469	27367023	-	VV2_0594	-	N-acyl-D-aspartate/D-glutamate deacylase
561	 51.97	+1	651837..653102	+	421	27367024	-	VV2_0595	-	amino acid aldolase or racemase
562	 49.31	0	653199..654062	+	287	27367025	-	VV2_0596	-	transcriptional regulator
563	 55.10	+2	654308..655258	+	316	27367026	-	VV2_0597	-	membrane-fusion protein
564	 51.02	0	655262..656188	+	308	27367027	-	VV2_0598	-	ABC-type multidrug transport system, ATPase component
565	 50.18	0	656185..657282	+	365	27367028	-	VV2_0599	-	ABC-type multidrug transport system, permease component
566	 50.32	0	657363..658304	+	313	27367029	-	VV2_0600	-	dehydrogenase
567	 47.62	0	658385..659014	-	209	27367030	-	VV2_0601	-	transcriptional regulator
568	 47.77	0	659153..660226	+	357	27367031	-	VV2_0602	-	Zn-dependent hydrolase
569	 50.55	0	661526..662350	+	274	27367032	-	VV2_0603	-	Co/Zn/Cd efflux system component
570	 47.96	0	662350..662766	+	138	27367033	-	VV2_0605	-	transcriptional regulator
571	 49.29	0	662754..663173	-	139	27367034	-	VV2_0606	-	lactoylglutathione lyase
572	 48.84	0	663203..663634	-	143	27367035	-	VV2_0607	-	hypothetical protein
573	 50.72	0	663874..665403	+	509	27367036	-	VV2_0608	-	superfamily II DNA/RNA helicase
574	 48.53	0	665468..665875	-	135	27367037	-	VV2_0609	-	ribosome recycling factor
575	 46.47	0	665912..666535	-	207	27367038	-	VV2_0610	-	acetyltransferase
576	 44.90	0	666546..666908	-	120	27367039	-	VV2_0611	-	hypothetical protein
577	 48.32	0	667098..667604	+	168	27367040	-	VV2_0612	-	acetyltransferase
578	 47.71	0	667833..669161	+	442	27367041	-	VV2_0613	-	hypothetical protein
579	 47.76	0	669158..670141	+	327	27367042	-	VV2_0614	-	chromosome segregation ATPase
580	 47.69	0	670203..670634	-	143	27367043	-	VV2_0615	-	histone acetyltransferase HPA2
581	 48.28	0	671039..671446	+	135	27367044	-	VV2_0616	-	nucleoside diphosphate kinase regulator
582	 51.53	+1	671710..672231	+	173	27367045	-	VV2_0617	-	SpoU class rRNA methylase
583	 40.00	-2	672373..672657	-	94	27367046	-	VV2_0618	-	transposase
584	 46.81	0	673033..673596	+	187	27367047	-	VV2_0619	-	transposase
585	 46.05	0	673742..673969	-	75	27367048	-	VV2_0620	-	hypothetical protein
586	 44.32	0	674683..675228	+	181	27367049	-	VV2_0622	-	hypothetical protein
587	 47.58	0	675258..677117	-	619	27367050	-	VV2_0623	-	ATPase involved in DNA repair
588	 48.35	0	677128..677946	-	272	27367051	-	VV2_0624	-	ATPase involved in DNA repair
589	 49.63	0	678055..678459	-	134	27367052	-	VV2_0625	-	hypothetical protein
590	 52.11	+1	678476..679636	-	386	27367053	-	VV2_0626	-	methyl-accepting chemotaxis protein
591	 49.35	0	679677..680669	-	330	27367054	-	VV2_0627	-	hypothetical protein
592	 52.67	+1	681143..681385	-	80	27367055	-	VV2_0629	-	IMP dehydrogenase/GMP reductase
593	 44.97	0	682432..682809	+	125	27367056	-	VV2_0630	-	hypothetical protein
594	 50.17	0	682894..683190	+	98	27367057	-	VV2_0631	-	hypothetical protein
595	 45.87	0	683208..683510	+	100	27367058	-	VV2_0632	-	hypothetical protein
596	 45.96	0	683524..684093	+	189	27367059	-	VV2_0633	-	hypothetical protein
597	 49.87	0	684090..684833	+	247	27367060	-	VV2_0634	-	hypothetical protein
598	 48.18	0	684823..686304	+	493	27367061	-	VV2_0635	-	ATPase involved in DNA repair
599	 47.97	0	686335..686703	+	122	27367062	-	VV2_0636	-	hypothetical protein
600	 47.55	0	686706..687887	+	393	27367063	-	VV2_0637	-	hypothetical protein
601	 49.08	0	687920..689005	+	361	27367064	-	VV2_0638	-	Type IV secretory pathway, VirB4 component
602	 50.72	0	689002..689346	+	114	27367065	-	VV2_0639	-	hypothetical protein
603	 49.63	0	689343..690023	+	226	27367066	-	VV2_0640	-	hypothetical protein
47.71	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.