IslandPathversion 1.0

IslandPath Analysis: Vibrio vulnificus CMCP6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.71 STD DEV: 3.40
Vibrio vulnificus CMCP6 chromosome II, complete sequence - 1..1844853
1557 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1355	 47.19	0	1607736..1609229	-	497	27367826	-	VV2_1473	-	catalase
1356	 47.88	0	1609621..1609950	+	109	27367827	-	VV2_1475	-	hypothetical protein
1357	 51.62	+1	1610058..1611473	+	471	27367828	-	VV2_1476	-	hypothetical protein
1358	 50.26	0	1611652..1612035	-	127	27367829	-	VV2_1477	-	lactoylglutathione lyase
1359	 50.00	0	1612035..1612946	-	303	27367830	-	VV2_1478	-	transcriptional regulator
1360	 50.79	0	1613369..1614508	+	379	27367831	-	VV2_1479	-	major facilitator superfamily permease
1361	 45.81	0	1614685..1616022	+	445	27367832	-	VV2_1480	-	transposase
1362	 50.00	0	1616073..1616420	-	115	27367833	-	VV2_1481	-	ATPase of the AAA+ class
1363	 51.68	+1	1616427..1618388	-	653	27367834	-	VV2_1482	-	regulatory P domain-containing protein
1364	 50.00	0	1618892..1620145	+	417	27367835	-	VV2_1483	-	phospholipase/lecithinase/hemolysin
1365	 51.01	0	1620420..1621613	+	397	27367836	-	VV2_1484	-	2-amino-3-ketobutyrate coenzyme A ligase
1366	 50.48	0	1621665..1622696	+	343	27367837	tdh	VV2_1485	-	L-threonine 3-dehydrogenase
1367	 43.36	-1	1622768..1623196	-	142	27367838	-	VV2_1486	-	hypothetical protein
1368	 36.50	-2	1623291..1623701	-	136	27367839	-	VV2_1487	-	hypothetical protein
1369	 48.04	0	1624093..1624602	-	169	27367840	-	VV2_1488	-	hypothetical protein
1370	 38.26	-2	1624679..1624942	-	87	27367841	-	VV2_1489	-	hypothetical protein
1371	 42.99	-1	1625180..1625914	-	244	27367842	-	VV2_1491	-	hypothetical protein
1372	 42.46	-1	1626223..1626507	+	94	27367843	-	VV2_1492	-	DNA-damage-inducible protein J
1373	 40.86	-2	1626504..1626782	+	92	27367844	-	VV2_1493	-	plasmid stabilization system protein protein
1374	 36.82	-2	1627218..1627475	-	85	27367845	-	VV2_1495	-	hypothetical protein
1375	 35.23	-2	1627485..1627748	-	87	27367846	-	VV2_1496	-	hypothetical protein
1376	 37.34	-2	1628272..1629918	-	548	27367847	-	VV2_1497	-	ATPase involved in DNA repair
1377	 47.40	0	1630809..1631270	-	153	27367848	-	VV2_1500	-	lipocalin
1378	 49.93	0	1631542..1632258	-	238	27367849	-	VV2_1501	-	Outer membrane protein V
1379	 49.25	0	1632485..1633615	-	376	27367850	-	VV2_1502	-	Zn-dependent hydrolase
1380	 48.23	0	1633728..1634660	+	310	27367851	-	VV2_1503	-	LysR family transcriptional regulator
1381	 49.81	0	1634774..1635568	-	264	27367852	-	VV2_1504	-	hypothetical protein
1382	 50.16	0	1635561..1637087	-	508	27367853	-	VV2_1505	-	hypothetical protein
1383	 43.03	-1	1637322..1637744	-	140	27367854	-	VV2_1506	-	hypothetical protein
1384	 44.73	0	1638181..1638768	+	195	27367855	-	VV2_1508	-	putative two-component response regulator
1385	 41.37	-1	1638852..1640207	-	451	27367856	-	VV2_1509	-	GGDEF family protein
1386	 41.94	-1	1640242..1640601	-	119	27367857	-	VV2_1510	-	response regulator
1387	 45.05	0	1640737..1641897	-	386	27367858	-	VV2_1511	-	response regulator VieA
1388	 44.17	-1	1641890..1645543	-	1217	27367859	-	VV2_1512	-	sensor kinase VieS
1389	 44.28	-1	1645904..1646305	-	133	27367860	-	VV2_1513	-	hypothetical protein
1390	 51.82	+1	1646569..1660533	+	4654	27367861	-	VV2_1514	-	autotransporter adhesin
1391	 51.44	+1	1660545..1662698	+	717	27367862	-	VV2_1515	-	toxin secretion ATP-binding protein
1392	 51.09	0	1662695..1664023	+	442	27367863	-	VV2_1516	-	HlyD family secretion protein
1393	 50.57	0	1664041..1665351	+	436	27367864	-	VV2_1517	-	agglutination protein
1394	 48.53	0	1665389..1665967	+	192	27367865	-	VV2_1518	-	Outer membrane protein, putative
1395	 46.86	0	1665995..1666903	+	302	27367866	-	VV2_1519	-	ABC-type phosphate transport system, periplasmic component
1396	 49.38	0	1667136..1667858	+	240	27367867	-	VV2_1520	-	carbonic anhydrase
1397	 47.19	0	1667987..1669090	-	367	27367868	-	VV2_1521	-	small-conductance mechanosensitive channel
1398	 43.97	-1	1669350..1669697	+	115	27367869	-	VV2_1522	-	transcriptional regulator protein
1399	 49.48	0	1669960..1670826	+	288	27367870	-	VV2_1523	-	methyl-accepting chemotaxis protein
1400	 49.58	0	1670823..1671536	+	237	27367871	-	VV2_1524	-	methyl-accepting chemotaxis protein
1401	 49.17	0	1671608..1671967	-	119	27367872	-	VV2_1525	-	hypothetical protein
1402	 44.33	0	1672053..1672343	-	96	27367873	-	VV2_1526	-	hypothetical protein
1403	 45.29	0	1672535..1672810	+	91	27367874	-	VV2_1527	-	acetyltransferase
1404	 46.51	0	1672864..1673364	-	166	27367875	-	VV2_1528	-	histone acetyltransferase HPA2
1405	 49.75	0	1673653..1675644	+	663	27367876	-	VV2_1529	-	hypothetical protein
1406	 50.12	0	1675664..1676920	+	418	27367877	-	VV2_1530	-	periplasmic protease
1407	 48.56	0	1677072..1678253	+	393	27367878	-	VV2_1531	-	major facilitator superfamily permease
1408	 48.33	0	1678312..1679151	-	279	27367879	-	VV2_1532	-	ABC-type cobalt transport system
1409	 50.32	0	1679148..1680689	-	513	27367880	-	VV2_1533	-	ABC-type cobalt transport system, ATPase component
1410	 47.18	0	1680879..1681427	-	182	27367881	-	VV2_1534	-	hypothetical protein
1411	 49.69	0	1681661..1682791	-	376	27367882	-	VV2_1535	-	multidrug resistance efflux pump
1412	 45.83	0	1682791..1683174	-	127	27367883	-	VV2_1536	-	GTPase
1413	 46.40	0	1683381..1684964	-	527	27367884	-	VV2_1537	-	GGDEF family protein
1414	 47.93	0	1684945..1686444	-	499	27367885	-	VV2_1538	-	ATP-dependent transcriptional regulator
1415	 47.11	0	1686605..1688128	-	507	27367886	-	VV2_1539	-	transposase
1416	 47.82	0	1688128..1688838	-	236	27367887	-	VV2_1540	-	purine nucleoside phosphorylase
1417	 46.02	0	1689254..1690207	+	317	27367888	-	VV2_1541	-	hypothetical protein
1418	 48.76	0	1690197..1691000	+	267	27367889	-	VV2_1542	-	MerR family transcriptional regulator
1419	 50.14	0	1691003..1692418	+	471	27367890	-	VV2_1543	-	deoxyribodipyrimidine photolyase
1420	 49.89	0	1692419..1693336	+	305	27367891	-	VV2_1544	-	hypothetical protein
1421	 47.67	0	1693357..1693635	-	92	27367892	-	VV2_1545	-	murein lipoprotein
1422	 46.88	0	1693992..1695335	+	447	27367893	-	VV2_1546	-	DEAD-box ATP dependent DNA helicase
1423	 50.27	0	1695589..1697619	+	676	27367894	-	VV2_1548	-	protease II
1424	 49.81	0	1697620..1699755	+	711	27367895	-	VV2_1549	-	Outer membrane receptor protein
1425	 51.75	+1	1699772..1702063	+	763	27367896	-	VV2_1550	-	regulatory P domain-containing protein
1426	 51.03	0	1702079..1703530	+	483	27367897	-	VV2_1551	-	hypothetical protein
1427	 52.58	+1	1703532..1704092	+	186	27367898	-	VV2_1552	-	hypothetical protein
1428	 48.06	0	1704197..1705588	-	463	27367899	-	VV2_1553	-	methyl-accepting chemotaxis protein
1429	 48.47	0	1705566..1706087	-	173	27367900	-	VV2_1554	-	methyl-accepting chemotaxis protein
1430	 48.18	0	1706400..1708043	-	547	27367901	-	VV2_1555	-	methyl-accepting chemotaxis protein
1431	 45.62	0	1708513..1709334	+	273	27367902	-	VV2_1556	-	ABC-type phosphate transport system, periplasmic component
1432	 48.55	0	1709423..1710355	+	310	27367903	-	VV2_1557	-	ABC-type phosphate transport system, permease component
1433	 47.57	0	1710377..1711240	+	287	27367904	-	VV2_1558	-	ABC-type phosphate transport system, permease component
1434	 48.00	0	1711299..1712048	+	249	27367905	-	VV2_1559	-	ABC-type phosphate transport system, ATPase component
1435	 48.03	0	1712315..1714417	+	700	27367906	-	VV2_1560	-	GGDEF family protein
1436	 48.18	0	1714501..1716123	-	540	27367907	-	VV2_1561	-	hypothetical protein
1437	 48.23	0	1716143..1718095	-	650	27367908	-	VV2_1562	-	TPR repeat-containing protein
1438	 48.77	0	1718088..1719059	-	323	27367909	-	VV2_1563	-	von Willebrand factor type A (vWA) domain-containing protein
1439	 48.41	0	1719052..1719522	-	156	27367910	-	VV2_1564	-	hypothetical protein
1440	 45.75	0	1719528..1720445	-	305	27367911	-	VV2_1565	-	hypothetical protein
1441	 48.07	0	1720449..1721405	-	318	27367912	-	VV2_1566	-	MoxR-like ATPase
1442	 46.60	0	1721704..1723617	+	637	27367913	-	VV2_1567	-	methyl-accepting chemotaxis protein
1443	 41.29	-1	1723665..1723865	+	66	27367914	-	VV2_1568	-	chromosome segregation ATPase
1444	 33.78	-2	1724041..1724706	+	221	27367915	-	VV2_1569	-	DNA-binding HTH domain-containing protein
1445	 38.39	-2	1724928..1725560	+	210	27367916	-	VV2_1570	-	DNA-binding HTH domain-containing protein
1446	 45.38	0	1725847..1726419	+	190	27367917	-	VV2_1571	-	calcium binding protein
1447	 46.24	0	1726914..1728176	+	420	27367918	-	VV2_1572	-	ABC-type protease/lipase transport system, ATPase and permease component
1448	 41.98	-1	1728169..1729509	+	446	27367919	-	VV2_1573	-	membrane-fusion protein
1449	 38.58	-2	1729690..1730013	-	107	27367920	-	VV2_1574	-	hypothetical protein
1450	 43.76	-1	1730087..1731400	-	437	27367921	-	VV2_1575	-	O-antigen and teichoic acid export protein
1451	 44.77	0	1731411..1732442	-	343	27367922	-	VV2_1576	-	glycosyltransferase
1452	 33.09	-2	1732439..1733272	-	277	27367923	-	VV2_1577	-	hypothetical protein
1453	 42.94	-1	1733425..1734465	-	346	27367924	-	VV2_1578	-	glycosyltransferase
1454	 43.70	-1	1734489..1736669	-	726	27367925	-	VV2_1579	-	ATPase involved in chromosome partitioning
47.71	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.