IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.83   STD DEV: 3.88
Vibrio cholerae O395 chromosome 2, complete sequence - 1..3024069
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1288	 50.45	0	1407465..1408802	-	445	147675329	mukF	VC0395_A1319	-	condesin subunit F
1289	 47.77	0	1408814..1409596	-	260	147674195	smtA	VC0395_A1320	-	putative metallothionein SmtA
1290	 49.47	0	1409686..1410534	+	282	147675084	-	VC0395_A1321	-	hypothetical protein
1291	 47.94	0	1410635..1411339	-	234	147675661	torR	VC0395_A1322	-	DNA-binding transcriptional regulator TorR
1292	 46.46	0	1411564..1412226	+	220	147674388	torD	VC0395_A1323	-	chaperone protein TorD
1293	 48.27	0	1412633..1413643	+	336	147673764	-	VC0395_A1324	-	LacI family transcription regulator
1294	 44.90	0	1414002..1414589	+	195	147675500	-	VC0395_A1325	-	hypothetical protein
1295	 47.25	0	1414944..1415633	+	229	147674835	-	VC0395_A1326	-	hypothetical protein
1296	 54.49	+1	1415667..1415978	+	103	147675056	-	VC0395_A1327	-	hypothetical protein
1297	 47.50	0	1415983..1416801	-	272	147674093	-	VC0395_A1328	-	putative beta-ketoadipate enol-lactone hydrolase
1298	 48.80	0	1416989..1418443	-	484	147673151	glgA	VC0395_A1329	-	glycogen synthase
1299	 46.47	0	1418445..1419662	-	405	147675674	glgC	VC0395_A1330	-	glucose-1-phosphate adenylyltransferase
1300	 37.78	-2	1419794..1419928	+	44	147673658	-	VC0395_A1331	-	hypothetical protein
1301	 50.36	0	1420330..1422960	-	876	147675774	topA	VC0395_A1332	-	DNA topoisomerase I
1302	 37.75	-2	1423298..1423546	+	82	147674634	-	VC0395_A1333	-	hypothetical protein
1303	 50.51	0	1423637..1424917	-	426	147673856	aroA	VC0395_A1334	-	3-phosphoshikimate 1-carboxyvinyltransferase
1304	 43.63	-1	1424921..1425124	+	67	147675255	-	VC0395_A1335	-	hypothetical protein
1305	 50.55	0	1425184..1425915	+	243	147674281	aat	VC0395_A1336	-	leucyl/phenylalanyl-tRNA--protein transferase
1306	 46.58	0	1425919..1426620	+	233	147674038	-	VC0395_A1337	-	arginyl-tRNA-protein transferase
1307	 43.84	-1	1426704..1426922	+	72	147673089	infA	VC0395_A1338	-	translation initiation factor IF-1
1308	 50.56	0	1427226..1428125	-	299	147675536	-	VC0395_A1339	-	trans-2-enoyl-CoA reductase
1309	 51.73	+1	1428630..1430912	-	760	147674587	-	VC0395_A1340	-	acyl-CoA dehydrogenase
1310	 47.70	0	1430968..1431642	-	224	147674301	-	VC0395_A1341	-	TetR family transcriptional regulator
1311	 42.03	-1	1431897..1432034	+	45	147673725	-	VC0395_A1342	-	hypothetical protein
1312	 49.32	0	1432013..1433038	+	341	147674529	-	VC0395_A1343	-	hypothetical protein
1313	 48.58	0	1433083..1433364	+	93	147674714	-	VC0395_A1345	-	hypothetical protein
1314	 50.24	0	1433345..1434811	-	488	147674887	gabD	VC0395_A1344	-	succinate-semialdehyde dehydrogenase
1315	 47.78	0	1434829..1435458	-	209	147675365	-	VC0395_A1346	-	TetR family transcriptional regulator
1316	 46.91	0	1435685..1436509	+	274	147673235	-	VC0395_A1347	-	hypothetical protein
1317	 45.23	0	1436409..1437635	+	408	147673829	-	VC0395_A1348	-	hypothetical protein
1318	 44.12	0	1437646..1438767	+	373	147674444	-	VC0395_A1349	-	hypothetical protein
1319	 45.39	0	1438783..1439661	-	292	147675699	-	VC0395_A1350	-	hypothetical protein
1320	 45.21	0	1440714..1442018	+	434	147675036	pqiA	VC0395_A1351	-	paraquat-inducible protein A
1321	 45.80	0	1442015..1443658	+	547	147675648	pqiB	VC0395_A1352	-	paraquat-inducible protein B
1322	 48.70	0	1443655..1444233	+	192	147673513	-	VC0395_A1353	-	putative lipoprotein
1323	 51.05	0	1444449..1445543	+	364	147675452	-	VC0395_A1354	-	HlyD family secretion protein
1324	 52.97	+1	1445543..1448593	+	1016	147673314	-	VC0395_A1355	-	AcrB/AcrD/AcrF family transporter
1325	 44.09	0	1449205..1450440	+	411	147675094	-	VC0395_A1357	-	phage family integrase
1326	 46.96	0	1450515..1450991	+	158	147675635	-	VC0395_A1358	-	integrase, truncation
1327	 40.92	-1	1451122..1454562	-	1146	147675032	-	VC0395_A1359	-	hypothetical protein
1328	 40.56	-1	1454553..1456004	-	483	147674089	-	VC0395_A1360	-	hypothetical protein
1329	 40.14	-1	1456001..1456735	-	244	147673520	-	VC0395_A1361	-	hypothetical protein
1330	 41.35	-1	1456728..1458848	-	706	147675323	-	VC0395_A1362	-	hypothetical protein
1331	 43.34	-1	1458893..1461961	-	1022	147674712	-	VC0395_A1363	-	putative type I restriction enzyme HsdR
1332	 43.22	-1	1461989..1463980	-	663	147675278	-	VC0395_A1364	-	hypothetical protein
1333	 44.94	0	1463973..1465385	-	470	147675030	-	VC0395_A1365	-	hypothetical protein
1334	 40.68	-1	1465386..1466774	-	462	147674628	-	VC0395_A1366	-	hypothetical protein
1335	 43.87	-1	1466731..1469112	-	793	147674983	-	VC0395_A1367	-	putative DNA methylase HsdM
1336	 41.67	-1	1469253..1471316	-	687	147674006	-	VC0395_A1368	-	hypothetical protein
1337	 41.82	-1	1471298..1474960	-	1220	147673329	-	VC0395_A1369	-	hypothetical protein
1338	 44.83	0	1474988..1475848	+	286	147675105	-	VC0395_A1370	-	hypothetical protein
1339	 36.13	-2	1475913..1476983	-	356	147674523	-	VC0395_A1371	-	hypothetical protein
1340	 41.65	-1	1476998..1478152	-	384	147673747	-	VC0395_A1372	-	hypothetical protein
1341	 43.61	-1	1478334..1479170	-	278	147675662	-	VC0395_A1373	-	hypothetical protein
1342	 43.14	-1	1479299..1480195	-	298	147675305	-	VC0395_A1374	-	dihydrodipicolinate synthetase family protein
1343	 45.33	0	1480233..1481516	-	427	147675054	-	VC0395_A1375	-	hypothetical protein
1344	 41.19	-1	1481524..1482045	-	173	147675211	-	VC0395_A1376	-	hypothetical protein
1345	 44.62	0	1482096..1483061	-	321	147673037	dctP-1	VC0395_A1377	-	C4-dicarboxylate-binding periplasmic protein
1346	 47.03	0	1483276..1483998	+	240	147674046	-	VC0395_A1378	-	N-acetylmannosamine-6-phosphate 2-epimerase
1347	 45.02	0	1483986..1484849	+	287	147674472	-	VC0395_A1379	-	N-acetylmannosamine kinase
1348	 44.94	0	1484853..1485989	+	378	147674908	nagA-2	VC0395_A1380	-	N-acetylglucosamine-6-phosphate deacetylase
1349	 45.17	0	1486334..1488757	+	807	147673281	nanH	VC0395_A1381	-	neuraminidase
1350	 44.44	0	1488904..1489110	-	68	147673587	-	VC0395_A1382	-	transcriptional regulator
1351	 48.85	0	1489224..1489700	+	158	147674352	-	VC0395_A1383	-	putative DNA repair protein RadC
1352	 46.97	0	1489703..1489834	+	43	147674468	-	VC0395_A1384	-	hypothetical protein
1353	 43.10	-1	1489930..1490625	-	231	147673665	-	VC0395_A1385	-	hypothetical protein
1354	 44.44	0	1490622..1491494	-	290	147675565	orfB	VC0395_A1386	-	transposase OrfAB, subunit B
1355	 43.19	-1	1491491..1491835	-	114	147674768	orfA	VC0395_A1387	-	transposase OrfAB, subunit A
1356	 44.00	0	1491842..1492882	-	346	147674028	-	VC0395_A1388	-	hypothetical protein
1357	 42.78	-1	1493017..1493376	-	119	147673269	-	VC0395_A1389	-	hypothetical protein
1358	 39.15	-2	1493425..1493802	-	125	147675221	-	VC0395_A1390	-	hypothetical protein
1359	 37.82	-2	1493857..1494435	-	192	147674482	-	VC0395_A1391	-	hypothetical protein
1360	 38.94	-2	1494454..1494774	-	106	147674980	-	VC0395_A1392	-	putative transcriptional regulator
1361	 39.73	-2	1494761..1495135	-	124	147673865	-	VC0395_A1393	-	putative transcriptional regulator
1362	 40.04	-2	1495945..1496406	-	153	147673501	-	VC0395_A1394	-	hypothetical protein
1363	 44.68	0	1496409..1497518	-	369	147675755	-	VC0395_A1395	-	hypothetical protein
1364	 47.61	0	1497490..1499247	-	585	147673618	-	VC0395_A1396	-	hypothetical protein
1365	 44.24	0	1499254..1500225	-	323	147674180	-	VC0395_A1397	-	hypothetical protein
1366	 38.33	-2	1500227..1500346	-	39	147674870	-	VC0395_A1398	-	hypothetical protein
1367	 38.82	-2	1500889..1501125	-	78	147675467	-	VC0395_A1399	-	hypothetical protein
1368	 40.48	-1	1501215..1501676	+	153	147674002	-	VC0395_A1400	-	hypothetical protein
1369	 48.25	0	1501903..1502217	+	104	147674565	-	VC0395_A1401	-	hypothetical protein
1370	 45.19	0	1502268..1502714	+	148	147674562	-	VC0395_A1402	-	hypothetical protein
1371	 43.36	-1	1502821..1503807	+	328	147673899	-	VC0395_A1403	-	hypothetical protein
1372	 33.79	-2	1503842..1504060	-	72	147673297	-	VC0395_A1404	-	hypothetical protein
1373	 29.08	-2	1504774..1505619	+	281	147675391	-	VC0395_A1405	-	hypothetical protein
1374	 47.19	0	1505734..1505964	-	76	147675012	-	VC0395_A1406	-	putative transcriptional regulator
1375	 43.63	-1	1506564..1506767	+	67	147675248	-	VC0395_A1408	-	hypothetical protein
1376	 47.05	0	1506759..1507232	-	157	147673789	-	VC0395_A1407	-	hypothetical protein
1377	 45.95	0	1507356..1507775	-	139	147674287	-	VC0395_A1409	-	hypothetical protein
1378	 50.58	0	1507892..1509277	+	461	147674040	cry1	VC0395_A1410	-	RNA-binding cryptochrome Cry1
1379	 52.82	+1	1509274..1509981	+	235	147673078	-	VC0395_A1411	-	C factor cell-cell signaling protein
1380	 45.37	0	1509992..1510207	-	71	147675532	-	VC0395_A1412	-	hypothetical protein
1381	 50.40	0	1510304..1512067	-	587	147674581	-	VC0395_A1413	-	sigma-54 dependent transcriptional regulator
1382	 49.51	0	1512348..1513868	+	506	147674305	aldA-2	VC0395_A1414	-	aldehyde dehydrogenase
1383	 37.41	-2	1514201..1514641	+	146	147674475	frvA	VC0395_A1415	-	PTS system, fructose-specific IIA component
1384	 49.79	0	1514653..1516056	+	467	147675511	frwBC	VC0395_A1416	-	PTS system, fructose-specific IIBC component
1385	 49.52	0	1516131..1517996	-	621	147673546	frwABC	VC0395_A1417	-	PTS system, fructose-specific IIABC component
1386	 49.33	0	1518213..1518512	+	99	147675767	frwB	VC0395_A1418	-	PTS system, fructose-specific IIB component
1387	 47.69	0	1518521..1519300	+	259	147674198	-	VC0395_A1420	-	putative PTS system, nitrogen regulatory IIA component
47.83	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.