version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2465 35.00 -2 2681453..2681572 - 39 15642491 - VC2495 - hypothetical protein 2466 37.63 -2 2681585..2681677 - 30 15642492 - VC2496 - hypothetical protein 2467 43.94 0 2681920..2683173 - 417 15642493 - VC2497 - hypothetical protein 2468 49.28 0 2683604..2684086 + 160 15642494 - VC2498 - hypothetical protein 2469 47.06 0 2684192..2685262 - 356 15642495 - VC2499 - hypothetical protein 2470 46.50 0 2685266..2686366 - 366 15642496 - VC2500 - hypothetical protein 2471 50.60 0 2686560..2688071 + 503 15642497 - VC2501 - leucyl aminopeptidase 2472 50.44 0 2688155..2688604 + 149 15642498 - VC2502 - DNA polymerase III subunit chi 2473 50.77 0 2688698..2691559 + 953 15642499 valS VC2503 - valyl-tRNA synthetase 2474 51.02 0 2691637..2692614 - 325 15642500 - VC2504 - D-lactate dehydrogenase 2475 49.73 0 2692654..2693391 - 245 15642501 - VC2505 - ribosomal large subunit pseudouridine synthase A 2476 51.82 +1 2693488..2696397 - 969 15642502 - VC2506 - ATP-dependent helicase HepA 2477 51.13 0 2696819..2698195 + 458 15642503 - VC2507 - hypothetical protein 2478 49.35 0 2698345..2699349 + 334 15642504 - VC2508 - ornithine carbamoyltransferase 2479 43.75 0 2699447..2699542 + 31 15642505 - VC2509 - hypothetical protein 2480 49.75 0 2699536..2700528 + 330 15642506 pyrB VC2510 - aspartate carbamoyltransferase catalytic subunit 2481 47.65 0 2700540..2701007 + 155 15642507 - VC2511 - aspartate carbamoyltransferase regulatory subunit 2482 50.51 0 2701112..2701501 + 129 15642508 - VC2512 - hypothetical protein 2483 49.75 0 2701582..2702367 - 261 15642509 - VC2513 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2484 51.75 +1 2702389..2703648 - 419 15642510 - VC2514 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2485 44.31 0 2703656..2703910 - 84 15642511 - VC2515 - BolA/YrbA family protein 2486 43.03 -1 2703903..2704232 - 109 15642512 - VC2516 - anti-sigma B factor antagonist, putative 2487 46.88 0 2704229..2704870 - 213 15642513 - VC2517 - hypothetical protein 2488 46.54 0 2704871..2705362 - 163 15642514 - VC2518 - hypothetical protein 2489 53.93 +1 2705365..2706141 - 258 15642515 - VC2519 - hypothetical protein 2490 50.25 0 2706146..2706949 - 267 15642516 - VC2520 - ABC transporter, ATP-binding protein 2491 42.19 -1 2707077..2707268 - 63 15642517 - VC2521 - hypothetical protein 2492 49.55 0 2707506..2708504 + 332 15642518 - VC2522 - hypothetical protein 2493 49.64 0 2708554..2709534 + 326 15642519 - VC2523 - hypothetical protein 2494 48.03 0 2709534..2710091 + 185 15642520 - VC2524 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2495 45.04 0 2710088..2710651 + 187 15642521 - VC2525 - hypothetical protein 2496 45.00 0 2710587..2711126 + 179 15642522 - VC2527 - hypothetical protein 2497 51.24 0 2711129..2711854 + 241 15642523 - VC2528 - ABC transporter, ATP-binding protein 2498 49.80 0 2711910..2713373 + 487 15642524 - VC2529 - RNA polymerase factor sigma-54 2499 40.97 -1 2713398..2713685 + 95 15642525 - VC2530 - sigma-54 modulation protein, putative 2500 46.98 0 2713688..2714134 + 148 15642526 - VC2531 - PTS system, nitrogen regulatory IIA component 2501 50.64 0 2714147..2715007 + 286 15642527 - VC2532 - hypothetical protein 2502 51.61 0 2715016..2715294 + 92 15642528 - VC2533 - phosphocarrier protein NPr 2503 53.30 +1 2715455..2716816 + 453 15642529 - VC2534 - magnesium transporter 2504 50.74 0 2716888..2718231 - 447 15642530 - VC2535 - peptidase PmbA 2505 50.00 0 2718330..2718911 + 193 15642531 - VC2536 - hypothetical protein 2506 51.84 +1 2719014..2719748 - 244 15642532 - VC2537 - thiamine ABC transporter, ATP-binding protein, putative 2507 52.73 +1 2719742..2721334 - 530 15642533 thiP VC2538 - thiamine transporter membrane protein 2508 51.16 0 2721344..2722336 - 330 15642534 tbpA VC2539 - thiamine transporter substrate binding subunit 2509 52.93 +1 2722206..2722598 - 130 15642535 - VC2540 - hypothetical protein 2510 55.35 +1 2722598..2723233 - 211 15642536 - VC2541 - aromatic acid decarboxylase 2511 50.59 0 2723240..2724595 - 451 15642537 - VC2542 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2512 43.94 0 2724584..2724847 + 87 15642538 - VC2543 - hypothetical protein 2513 48.76 0 2724901..2725911 + 336 15642539 - VC2544 - fructose-1,6-bisphosphatase 2514 49.34 0 2726081..2726611 + 176 15642540 - VC2545 - inorganic pyrophosphatase 2515 48.28 0 2726671..2727018 - 115 15642541 - VC2546 - hypothetical protein 2516 50.86 0 2727029..2730793 - 1254 15642542 - VC2547 - hypothetical protein 2517 49.51 0 2730790..2732538 - 582 15642543 - VC2548 - hypothetical protein 2518 53.83 +1 2732684..2733322 + 212 15642544 - VC2549 - methionine sulfoxide reductase A 2519 49.46 0 2733404..2733955 + 183 15642545 - VC2550 - hypothetical protein 2520 50.00 0 2734173..2734478 + 101 15642546 - VC2551 - hypothetical protein 2521 48.15 0 2734527..2735255 + 242 15642547 - VC2552 - hypothetical protein 2522 50.77 0 2735337..2736053 + 238 15642548 - VC2553 - ABC transporter, ATP-binding protein, authentic frameshift 2523 51.50 0 2736044..2737309 + 421 15642549 - VC2554 - hypothetical protein 2524 47.89 0 2737362..2737883 + 173 15642550 - VC2555 - hypothetical protein 2525 50.27 0 2738194..2738559 + 121 15642551 - VC2556 - hypothetical protein 2526 50.34 0 2738505..2739092 + 195 15642552 - VC2557 - hypothetical protein 2527 53.40 +1 2739165..2739812 - 215 15642553 - VC2558 - adenylylsulfate kinase 2528 48.50 0 2739823..2741253 - 476 15642554 cysN VC2559 - sulfate adenylyltransferase subunit 1 2529 49.50 0 2741271..2742179 - 302 161581985 - VC2560 - sulfate adenylyltransferase subunit 2 2530 54.78 +1 2742282..2743181 - 299 15642556 - VC2561 - uroporphyrin-III C-methyltransferase 2531 48.97 0 2743382..2745427 + 681 15642557 cpdB VC2562 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2532 50.53 0 2745547..2746116 + 189 15642558 - VC2563 - hypothetical protein 2533 50.54 0 2746119..2747501 - 460 15642559 - VC2564 - ATP-dependent RNA helicase DbpA 2534 49.11 0 2747727..2748176 + 149 15642560 - VC2565 - elaA protein 2535 51.60 0 2748179..2748988 + 269 15642561 - VC2566 - hypothetical protein 2536 50.09 0 2748938..2749510 - 190 15642562 - VC2567 - hypothetical protein 2537 50.48 0 2749721..2750350 + 209 15642563 - VC2568 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2538 45.34 0 2750486..2750968 + 160 15642564 - VC2569 - hypothetical protein 2539 49.10 0 2751112..2751498 - 128 15642565 rplQ VC2570 - 50S ribosomal protein L17 2540 47.03 0 2751525..2752517 - 330 15642566 - VC2571 - DNA-directed RNA polymerase subunit alpha 2541 46.54 0 2752542..2753162 - 206 15642567 rpsD VC2572 - 30S ribosomal protein S4 2542 50.26 0 2753190..2753579 - 129 15642568 - VC2573 - 30S ribosomal protein S11 2543 47.34 0 2753599..2753955 - 118 15642569 rpsM VC2574 - 30S ribosomal protein S13 2544 45.61 0 2754105..2754218 - 37 15642570 rpmJ VC2575 - 50S ribosomal protein L36 2545 45.62 0 2754257..2755591 - 444 15642571 secY VC2576 - preprotein translocase subunit SecY 2546 46.90 0 2755612..2756046 - 144 15642572 rplO VC2577 - 50S ribosomal protein L15 2547 41.24 -1 2756052..2756228 - 58 15642573 rpmD VC2578 - 50S ribosomal protein L30 2548 46.23 0 2756235..2756738 - 167 15642574 rpsE VC2579 - 30S ribosomal protein S5 2549 50.00 0 2756753..2757106 - 117 15642575 rplR VC2580 - 50S ribosomal protein L18 2550 47.75 0 2757116..2757649 - 177 15642576 rplF VC2581 - 50S ribosomal protein L6 2551 46.06 0 2757664..2758056 - 130 15642577 rpsH VC2582 - 30S ribosomal protein S8 2552 46.73 0 2758086..2758391 - 101 15642578 rpsN VC2583 - 30S ribosomal protein S14 2553 47.78 0 2758409..2758948 - 179 15642579 rplE VC2584 - 50S ribosomal protein L5 2554 41.19 -1 2758973..2759290 - 105 15642580 rplX VC2585 - 50S ribosomal protein L24 2555 47.31 0 2759303..2759674 - 123 15642581 rplN VC2586 - 50S ribosomal protein L14 2556 43.92 0 2759837..2760091 - 84 15642582 rpsQ VC2587 - 30S ribosomal protein S17 2557 46.35 0 2760091..2760282 - 63 15642583 rpmC VC2588 - 50S ribosomal protein L29 2558 47.69 0 2760282..2760692 - 136 15642584 rplP VC2589 - 50S ribosomal protein L16 2559 50.00 0 2760704..2761405 - 233 15642585 rpsC VC2590 - 30S ribosomal protein S3 2560 47.15 0 2761425..2761757 - 110 15642586 rplV VC2591 - 50S ribosomal protein L22 2561 45.16 0 2761768..2762046 - 92 15642587 rpsS VC2592 - 30S ribosomal protein S19 2562 51.39 0 2762067..2762891 - 274 15642588 rplB VC2593 - 50S ribosomal protein L2 2563 43.56 0 2762908..2763210 - 100 15642589 rplW VC2594 - 50S ribosomal protein L23 2564 46.60 0 2763207..2763809 - 200 15642590 rplD VC2595 - 50S ribosomal protein L4 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0