version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2200 39.81 -1 2382242..2382349 + 35 15642226 - VC2228 - hypothetical protein 2201 50.24 0 2382364..2383209 - 281 15642227 - VC2229 - hypothetical protein 2202 45.66 0 2383272..2383847 - 191 15642228 gmhA VC2230 - phosphoheptose isomerase 2203 50.31 0 2384165..2386609 + 814 15642229 fadE VC2231 - acyl-CoA dehydrogenase 2204 47.30 0 2386756..2388015 - 419 15642230 - VC2232 - hypothetical protein 2205 47.58 0 2388024..2388767 - 247 15642231 - VC2233 - DNA polymerase III subunit epsilon 2206 52.87 +1 2388824..2389294 + 156 15642232 rnhA VC2234 - ribonuclease H 2207 45.39 0 2389365..2390102 - 245 15642233 - VC2235 - hypothetical protein 2208 49.41 0 2390140..2390898 + 252 15642234 - VC2236 - hydroxyacylglutathione hydrolase GloB, putative 2209 49.66 0 2390970..2392568 + 532 15642235 - VC2237 - membrane-bound lytic murein transglycosylase D 2210 47.87 0 2392585..2393430 - 281 15642236 - VC2238 - hypothetical protein 2211 47.54 0 2393498..2393842 - 114 15642237 - VC2239 - nitrogen regulatory protein P-II 2212 44.76 0 2393996..2394520 - 174 15642238 - VC2240 - decarboxylase 2213 51.54 0 2394897..2395220 - 107 15642239 - VC2241 - cytochrome c554 2214 52.31 +1 2395256..2396578 - 440 15642240 - VC2242 - mesJ protein 2215 46.67 0 2396546..2396650 + 34 15642241 - VC2243 - hypothetical protein 2216 50.00 0 2396718..2397677 - 319 15642242 - VC2244 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 2217 50.73 0 2397732..2401226 - 1164 15642243 dnaE VC2245 - DNA polymerase III subunit alpha 2218 51.53 0 2401250..2401870 - 206 15642244 rnhB VC2246 - ribonuclease HII 2219 51.84 +1 2401895..2403034 - 379 15642245 lpxB VC2247 - lipid-A-disaccharide synthase 2220 49.56 0 2403195..2403983 - 262 15642246 - VC2248 - UDP-N-acetylglucosamine acyltransferase 2221 44.81 0 2403985..2404446 - 153 15642247 fabZ VC2249 - (3R)-hydroxymyristoyl-ACP dehydratase 2222 49.24 0 2404522..2405577 - 351 15642248 lpxD VC2250 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2223 44.71 0 2405587..2406096 - 169 15642249 - VC2251 - outer membrane protein OmpH 2224 47.76 0 2406111..2408522 - 803 15642250 - VC2252 - outer membrane protein assembly factor YaeT 2225 48.64 0 2408571..2409929 - 452 15642251 - VC2253 - hypothetical protein 2226 50.79 0 2409926..2411134 - 402 15642252 - VC2254 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2227 48.16 0 2411183..2412025 - 280 15642253 - VC2255 - phosphatidate cytidylyltransferase 2228 46.17 0 2412043..2412813 - 256 15642254 - VC2256 - undecaprenyl diphosphate synthase 2229 47.31 0 2412887..2413444 - 185 15642255 frr VC2257 - ribosome recycling factor 2230 49.04 0 2413498..2414229 - 243 15642256 pyrH VC2258 - uridylate kinase 2231 48.16 0 2414417..2415259 - 280 15642257 tsf VC2259 - elongation factor Ts 2232 47.33 0 2415391..2416119 - 242 15642258 rpsB VC2260 - 30S ribosomal protein S2 2233 46.86 0 2416460..2417302 + 280 15642259 - VC2261 - methionine aminopeptidase 2234 49.28 0 2417392..2420037 + 881 15642260 - VC2262 - PII uridylyl-transferase 2235 43.43 0 2420112..2420210 - 32 15642261 - VC2263 - hypothetical protein 2236 39.61 -1 2420283..2420696 + 137 15642262 - VC2264 - hypothetical protein 2237 48.82 0 2420737..2421246 - 169 15642263 - VC2265 - phosphatidylglycerophosphatase A 2238 50.35 0 2421243..2422247 - 334 15642264 - VC2266 - thiamine monophosphate kinase 2239 46.92 0 2422308..2422778 - 156 15642265 nusB VC2267 - transcription antitermination protein NusB 2240 46.92 0 2422778..2423248 - 156 161581993 ribH VC2268 - riboflavin synthase subunit beta 2241 51.44 0 2423513..2424622 - 369 15642267 - VC2269 - 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 2242 48.78 0 2424663..2425316 - 217 15642268 - VC2270 - riboflavin synthase subunit alpha 2243 51.90 +1 2425321..2426424 - 367 15642269 - VC2271 - riboflavin-specific deaminase 2244 48.00 0 2426450..2426899 - 149 161581992 - VC2272 - transcriptional regulator NrdR 2245 52.07 +1 2426999..2428252 - 417 15642271 proA VC2273 - gamma-glutamyl phosphate reductase 2246 52.29 +1 2428261..2429394 - 377 161581991 - VC2274 - gamma-glutamyl kinase 2247 47.44 0 2429515..2429904 - 129 15642273 - VC2275 - DNA-binding transcriptional regulator Crl 2248 48.40 0 2430038..2431285 - 415 15642274 frsA VC2276 - fermentation/respiration switch protein 2249 47.74 0 2431382..2431846 - 154 15642275 - VC2277 - xanthine-guanine phosphoribosyltransferase 2250 49.34 0 2431884..2433176 - 430 15642276 - VC2278 - hypothetical protein 2251 48.72 0 2433923..2435527 + 534 15642277 - VC2279 - aminoacyl-histidine dipeptidase 2252 46.40 0 2435761..2436204 + 147 15642278 - VC2280 - hypothetical protein 2253 50.22 0 2436201..2437106 + 301 15642279 - VC2281 - ribosomal protein S6 modification protein 2254 48.85 0 2437066..2438154 + 362 15642280 - VC2282 - hypothetical protein 2255 48.30 0 2438223..2439578 - 451 15642281 - VC2283 - sodium-dependent transporter 2256 30.39 -2 2439637..2439738 + 33 15642282 - VC2284 - hypothetical protein 2257 44.60 0 2439735..2441252 - 505 15642283 - VC2285 - GGDEF family protein 2258 43.19 0 2441316..2442086 - 256 15642284 - VC2286 - hypothetical protein 2259 47.00 0 2442332..2443414 - 360 15642285 - VC2287 - DNA polymerase IV 2260 49.57 0 2443523..2443756 - 77 15642286 - VC2288 - hypothetical protein 2261 46.01 0 2443773..2444876 - 367 15642287 - VC2289 - thiamin biosynthesis lipoprotein ApbE 2262 46.94 0 2444923..2446149 - 408 15642288 - VC2290 - Na(+)-translocating NADH-quinone reductase subunit F 2263 46.06 0 2446183..2446779 - 198 15642289 - VC2291 - Na(+)-translocating NADH-quinone reductase subunit E 2264 45.34 0 2446787..2447419 - 210 15642290 - VC2292 - Na(+)-translocating NADH-quinone reductase subunit D 2265 47.03 0 2447419..2448192 - 257 15642291 - VC2293 - Na(+)-translocating NADH-quinone reductase subunit C 2266 49.69 0 2448179..2449462 - 427 15642292 - VC2294 - Na(+)-translocating NADH-quinone reductase subunit B 2267 48.45 0 2449432..2450820 - 462 15642293 - VC2295 - Na(+)-translocating NADH-quinone reductase subunit A 2268 47.66 0 2451257..2451577 - 106 15642294 - VC2296 - bolA protein 2269 45.32 0 2451622..2452872 + 416 15642295 - VC2297 - hypothetical protein 2270 46.22 0 2452869..2453489 + 206 15642296 - VC2298 - putative lipoprotein 2271 48.55 0 2453446..2454030 + 194 15642297 - VC2299 - peptidyl-prolyl cis-trans isomerase A 2272 47.88 0 2454099..2455487 + 462 15642298 - VC2300 - ampG protein, putative 2273 48.75 0 2455575..2456255 - 226 15642299 - VC2301 - transcriptional activator, putative 2274 46.15 0 2456252..2456836 - 194 15642300 - VC2302 - RNA polymerase sigma factor 2275 45.02 0 2456927..2457508 - 193 15642301 - VC2303 - hypothetical protein 2276 26.13 -2 2457577..2457687 + 36 15642302 - VC2304 - hypothetical protein 2277 43.43 0 2457746..2458636 + 296 15642303 - VC2305 - outer membrane protein OmpK 2278 41.94 -1 2458633..2458725 - 30 15642304 - VC2306 - hypothetical protein 2279 49.94 0 2458775..2459665 + 296 15642305 - VC2307 - 2-dehydropantoate 2-reductase 2280 54.85 +1 2459650..2460267 + 205 15642306 - VC2308 - 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 2281 52.35 +1 2460251..2461465 + 404 15642307 - VC2309 - aminotransferase, class V 2282 51.03 0 2461535..2461969 - 144 15642308 - VC2310 - hypothetical protein 2283 49.27 0 2461974..2462795 - 273 15642309 - VC2311 - HesA/MoeB/ThiF family protein 2284 49.59 0 2462887..2463993 - 368 15642310 mltA VC2312 - murein transglycosylase A 2285 42.34 -1 2463957..2464067 + 36 15642311 - VC2313 - hypothetical protein 2286 43.70 0 2464064..2464468 - 134 15642312 - VC2314 - hypothetical protein 2287 37.50 -2 2464517..2464612 - 31 15642313 - VC2315 - hypothetical protein 2288 49.74 0 2464704..2466074 + 456 15642314 - VC2316 - N-acetylglutamate synthase 2289 33.33 -2 2466048..2466212 - 54 15642315 - VC2317 - hypothetical protein 2290 44.62 0 2466301..2466486 + 61 15642316 - VC2318 - hypothetical protein 2291 52.52 +1 2466516..2468636 - 706 15642317 - VC2319 - exodeoxyribonuclease V, 67 kDa subunit 2292 54.04 +1 2468633..2472259 - 1208 15642318 - VC2320 - exodeoxyribonuclease V, 135 kDa subunit 2293 50.98 0 2472416..2472517 - 33 15642319 - VC2321 - hypothetical protein 2294 52.74 +1 2472524..2475970 - 1148 15642320 recC VC2322 - exonuclease V subunit gamma 2295 53.56 +1 2476209..2477177 - 322 15642321 - VC2323 - hypothetical protein 2296 49.62 0 2477288..2478202 + 304 15642322 - VC2324 - LysR family transcriptional regulator 2297 49.55 0 2478157..2478267 + 36 15642323 - VC2325 - hypothetical protein 2298 50.49 0 2478318..2478626 + 102 15642324 - VC2326 - hypothetical protein 2299 44.44 0 2478627..2478725 - 32 15642325 - VC2327 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0